<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:05:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603181" ref_strand="+" ref_description="SGN-U603181 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157359794|emb|CAO68516.1| (e_value=3e-31) unnamed; ">
      <seq>caggctgaattggagaagtggctgggtgagaaatcagacaaatacttggatgaacatgttgataaagttgaattgaagccaggtagtggtgtatacaaacctgacaacgagtgggtgcagtgtgacaaatgtagaaagtggagaatgttgagccatggcttcaacagcaagactttaccacttcagtggttctgttacatgaaaccttttaacggggaatgcgagagatcagagcaggaagttgaacctggagtgataacgatatccagcaagcgtctgggatacagttccactgaagatcccgaagagataaagcgcaagctctccagacaagctgtggggacatcaaaaaacgtgggtgagaatgattcaagtcattcaatggatgaggatcaagcanaaaaatcacctgcacagaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="+" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="96959" stop="100706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97258" g_stop="97332" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97333" i_stop="98259" i_length="927">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98260" g_stop="98372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="188" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98373" i_stop="98869" i_length="497">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98870" g_stop="99033" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="352" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99034" i_stop="100336" i_length="1303">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100337" g_stop="100406" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="422" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="+" ref_id="SGN-U603181" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97258" e_stop="97332"/>
          <exon e_start="98260" e_stop="98372"/>
          <exon e_start="98870" e_stop="99033"/>
          <exon e_start="100337" e_stop="100406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTGAATTGGAGAAGTGGCTGGGTGAGAAATCAGACAAATACTTGGATGAACATGTTGATAAAGTTGAATTGGTACTTCCTCACTACACTGGCCTAGTATAACTTTATTTGCCGTAGCTACTTCTTCCTTCCCCCATCACAATCGTGATTTTATTCTTTATGGGCTATTGTAATTTGCCATGGATTTGAAGCTGGTATGCTCTTCAACTTTATCATTGATTGCTCAGTTTTGATGGGATAACTTGTTTAATATCGGGGATGCAATCTAATGACTTAAAACCACCCTATCAACTTTGAATGAGGACTAATGATATGAGTTCTGTGGGAGTAATTTGAAGGATAAAATGGTGGTCATATTCATGCAACCAAAACAAAATAATTTCTTTAGCAGAGCTGGATCTGAAAGGGCAAGTAAACTCGGTTAAGCAAGGCATATAAAACCTTCGAAGAAAAAATAAAAGTTCAGTGGTACTAGAGTCAAGTTTGCCTCAGGTTCAGGAATCATCGCTAATGGCGCTGTTGGTTTCCCCTTTTTGGAGATTGATGAAGTGATTTATTGTCCATTCCCACAAAGAGGCGTGTAGCACAGAAATTATTTTATGTGGTCCATCTGATAACAAATAAGGCATGAGGAAAGTGTTCAAATGTTTCTGCCTCATGCGTAATATTTCGATACTAATTTGTGAGTATGATTATCCAAACTACTGCCTGCATAGGCAGCAGTACGCCTTTACTTTCATGTCATGTTGATGCCTTGCAAGAAATATTATTGAAAAAAGTACCATTAATCCTCTTCTTTGTATGATTTCCTTTTTGAAATGTCAGTACACTCACTATATAGCTTTTCTGGCATTTCTGAGCTGATCTGAGCAGGGAGAAGGGATCTCTCCGATTTCTCTCAAGTCATTCTATTGCTTTTTTAGATTTTAGAGTTGATGGTTCATTTTGTCAAAGATGGCATTCTCACCAATTTTAAACATGGGTTTTCTTTTCTTACAGAAGCCAGGTAGTGGTGTATACAAACCTGACAACGAGTGGGTGCAGTGTGACAAATGTAGAAAGTGGAGAATGTTGAGCCATGGCTTCAACAGCAAGACTTTACCACTTCAGTGGTAAGAGTCTTATCTGACTTCCCTGGACTTAATTGACAGATGTTACTGTATTATTTCCTAAATTGATAGTTACCCACAATTTTAGATTCATGACAAAATTGATATAGAGATTACTTCACTTCTGAAAAAATTACTCCTCTTTCTCATCTCCTAATTATGTTCCCCTTGTAATGCACATCCAAGAACATACATTATGGAATTCAAAGATAATATGTTGTTCCGTTGGAATGTGGTCTTTTATAGAAAATCTGATTTATTGCAAGATAATATTTATTTTGTTTGTGTTCAGTTTTGCTATATTGTTTGCTTTCTTGTCTGAATTCCACAGTGAAGTTCTACTTGTTCACTAGGTCATTATAATAGTTAATTTGTTTTGCTGTTGTTTTTCACATTTTCTCATGTACAAAAATTTGTCATCATGTTTATTAGTTAAAAAGTATTTGCCTCATATTCACTAAATGTTTTGTTCTGTATATCCTGTTTTAACATTACTATAGGTTCTGTTACATGAAACCTTTTAACGGGGAATGCGAGAGATCAGAGCAGGAAGTTGAACCTGGAGTGATAACGATATCCAGCAAGCGTCTGGGATACAGTTCCACTGAAGATCCCGAAGAGATAAAGCGCAAGCTCTCCAGACAAGCTGTGGGGACATCAAAAAGTATGACACTGAAATTGTTCACTTCTTTAGTTATTCTGGTTTGCAGCTAGAGATGAGTGGTTATTATATTATGCCATCAGTGTTTTTAGCAGTGTGACAAACAACAAATAATAAAGAAAGAAAATGAAATGCTACTTGCAGCGCAGCAAGTGCTGTTTCCTGTAAACAGTGGGTGTAACATTGTATACAGTATAATAGTTTAGCTACTCTTTTTCCTGGTGAGAAGTGCATGTTGAAGTGATTTTTGCTTAATTAGATAAATTTCCGAAGTCTAGGTGAAGCAGCTTGAGGATATATAATTTTAGATGGTCATTTAAGTTTTATTTATAGGGTTGACCCATGATATTAGTGTTTTGTTTTTAGTTGCAGCCACTGTCTTGTTGGGGGGTTATGCTAGAGTCTAGACCCCTACATGTGTGAGGGGTATATGAAGCATAACCTCCTCAAAAGAGACTAAGGAATTGGACAGACCCAATCGCTTACACTTCAGTACCAGAAACTCAAATCTGGGCTCTACTAGAAATGTTATACAGATTCCCCTTTTATGATATCTAAGAGATAAAAGATCTCTTTCAGCAGTTCCCTTACAAAATTTAGCTTCACAAAAATGTACAAATCAACATATATCATGAAAATACCAGTTCATGAGGGTTTTTCTTCCTAACACTAAGGCTAGGGATCTTCCTTTTATCCAGTTGTAGTAAACCTCTCATTTGCCTTGTGAGGCTATCAAGAGAGTTATAAGTCTTCTCATTTCCAGAGGGTAAGCTCAAGATAGTAAGTTTGTCAGCCACTTGATTGGCTGGCCTTAAGGCAGTGGTGAATAACTCAATCTGAATCTGGTAGAGCATTTTGTATATCCCTTGTTTTGTGAGTTGCCGTGGGATCTTGAAAAACCTCCCTGATGCATTATTGCAAGATATCAATGTTCGTTGAGGTGTTCTGCAGGGTGAAAAATCTGGAATGGATAATGTTCATTAATTTTAGTTTTCTTAAAGTCCACATCCATATTCGTTATTTGAAGTAAAGGAAACATTTAGGATATTTAATGTTAACGGTTTCAGTTTTCTGGGCTGGAAACAAAGAAACATTCCAGCTCTTTAATGGGGTGCAATTTTTTTTATGGTTTTATTTCCTCTACTTTTGCACTAGACTTGTTTTAACTGGATCAACGTAATGAGAATTTTGACTGTAACGAGATTTAACTTTCAGTCTGCAGACATTCCATGTACAAGATAATGCTTGTTAGGTAACACACGTTGTTTCTTTTTCTCATATTTTCTGCTCTTGGTTTCTTATGCAGACGTGGGTGAGAATGATTCAAGTCATTCAATGGATGAGGATCAAGCAAAAAAATCACCTGCACAGAAACG</genome_strand>
        <mrna_strand>CAGGCTGAATTGGAGAAGTGGCTGGGTGAGAAATCAGACAAATACTTGGATGAACATGTTGATAAAGTTGAATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCAGGTAGTGGTGTATACAAACCTGACAACGAGTGGGTGCAGTGTGACAAATGTAGAAAGTGGAGAATGTTGAGCCATGGCTTCAACAGCAAGACTTTACCACTTCAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTTACATGAAACCTTTTAACGGGGAATGCGAGAGATCAGAGCAGGAAGTTGAACCTGGAGTGATAACGATATCCAGCAAGCGTCTGGGATACAGTTCCACTGAAGATCCCGAAGAGATAAAGCGCAAGCTCTCCAGACAAGCTGTGGGGACATCAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGGGTGAGAATGATTCAAGTCATTCAATGGATGAGGATCAAGCANAAAAATCACCTGCACAGAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572451" ref_strand="+" ref_description="SGN-U572451 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157349722|emb|CAO39578.1| (e_value=2e-26) unnamed; (*ATH) AT5G51590.1 (e_value=1e-23) | Symbol: None | DNA-binding protein-related, contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam:PF02178 | chr5:20973793-20976339 REVERSE | Aliases: K17N15.14, K17N15_14; ">
      <seq>aaatcagttcaaagcatcaatggaaaacgtgggatcaacctccgccgccgacgataatacgccggcgcaaccaatctcctcctcgactcctctggtcccttcatttccggacccttccgtcagtacaactgaatcgtggaaacgcggaagaccaaaccctggggtgactactcctccaccgtctcaggtcgccggcggtggactttcgtcttctgcgcagctgcaggcagatgaaacggcggtttctactgggaataagcagcaaagcgttgatttgggatcagaagtagccgctcttggatttatgcaatcacacgtgatcaacataaaaactggggaggatatattggtcaaaataatgtcattctgcgaaagtacctctaaatcaatgtgtggtctgtcaaccaatgggtccacatctagtgtatcacttcgccgaccatatcaatctgtaacatataagggagtgtacgacatccttagtctgactgggttcttctttgtcttggaatctggtgggcgacacagcagagaaggtggcttgactgcgatacttggtaatgaagaanatggtgatgtttggggaggcaatgtggatgggctctttacagcagcaactgatgttcaggttattgttagtagcttcagcacaggaaaacaggtgcagtcaganaactttggtacaccagcaaaattaantcctatgncagttngaagtttaagtgggtctgtgagccctgatagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="+" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="101550" stop="103854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101850" g_stop="102127" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102128" i_stop="102616" i_length="489">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102617" g_stop="102678" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="340" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102679" i_stop="102836" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102837" g_stop="102959" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="463" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102960" i_stop="103189" i_length="230">
            <donor d_prob="0.349" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103190" g_stop="103354" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="628" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103355" i_stop="103435" i_length="81">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103436" g_stop="103554" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="747" r_length="119" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="+" ref_id="SGN-U572451" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101850" e_stop="102127"/>
          <exon e_start="102617" e_stop="102678"/>
          <exon e_start="102837" e_stop="102959"/>
          <exon e_start="103190" e_stop="103354"/>
          <exon e_start="103436" e_stop="103554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAGTTCAAAGCATCAATGGAAAACGTGGGATCAACCTCCGCCGCCGACGATAATACGCCGGCGCAACCAATCTCCTCCTCGACTCCTCTGGTCCCTTCATTTCCGGACCCTTCCGTCAGTACAACTGAATCGTGGAAACGCGGAAGACCAAACCCTGGGGTGACTACTCCTCCACCGTCTCAGGTCGCCGGCGGTGGACTTTCGTCTTCTGCGCAGCTGCAGGCAGATGAAACGGCGGTTTCTACTGGGAATAAGCAGCAAAGCGTTGATTTGGGTAAATTTATATGAAGTGAACTTCTGTACTCTACACATGTCTAATTATTTCTGTATTTGTTTATTTGTGTTACAACTAGCCTTGCTTTACTTTTATTATTAGCGCTACAATTCTTTATACCATATGAATATTTGTCCTCGATTTGTGTGATTCTTGTTGAGTTTTCTTCTGCAAAATGTTGAATAATTGCCTGCTTTCATACTAGTATAAAGAAGCCATTCTTGTTCTTTTTAACCCTTTCCTCTGGTGTTCATTTTACTGTGTATTTCTTCATTGCAATTTGGAAATTGAATATTAAAGATTTATTTTGCCCTTCCAATTTCCCTGTTAGCATACTTTGATATGATGTTCAACAGAAAACGTCTCATTCCCTCTCTTATGCTATTCGCCAAATCTGAATTTGAAATTTAATAGCTGATGATTTGTAATTTGGAGTTAAACAGTCTTGGTATGTTCTTTCTACCAAATCTCAAGTCACTCTTCTTGCAGGATCAGAAGTAGCCGCTCTTGGATTTATGCAATCACACGTGATCAACATAAAAACTGGGGAGGTGTGGTCTTAATTAACCTCTCTTTTGATCAGCATGTATTTGTTTATCTTATCAGTAGAAACAACGAGAATATAGTATATAATGTTTCTTTATATAGGAAATAATATTTTCTCAATATCTTTCTTTACTTTATTTAATCTGGCCTTTTGGCTTCTCAGGATATATTGGTCAAAATAATGTCATTCTGCGAAAGTACCTCTAAATCAGTGTGTGTTCTGTCAGCCAATGGTTCCACATCTAGTGTATCACTTCGCCGACCATATCAATCTGTAACATATAAGGTGTGTATGTATTTCCATGTTTATATTTGAGAGTGGGTGTGGACATGTATCAAGTTTATCATGTATTTTGCCTCGTGTGCTGATCTACCTTAGATTTTATCATTTATGTCGTAGTATGTAACCCCTCGACCAAATGTTTGACACTTTTGGCTGGATATACTTCAGTACCATCACATGCCTCGATAGTATCACATTCTGATAACAAAAGAATTGTTGTTTAACTGGTGCAGGGAGTGTACGACATCCTTAGTCTGACTGGTTTCTTCTTTGTCTTGGAATCTGGTGGTCGACACAGCAGAGAAGGTGGCTTGACTGCGATACTTGGTAATGAAGAAGATGGTGATGTTTGGGGAGGCAATGTGGATGGGCTCTTTACAGCAGCAACTGATGTTCAGGTTTGACATAGAAAATTTTCAAAGATAGTGTCTGAATTAGCTCTACTTCCATCAGCATATTGAAATCCAATTATGGTGCAGGTTATTGTTAGTAGCTTCAGCACAGGAAAACAGGTGCAGTCAGACAACTTTGGTACACCAGCAAAATTAAGTCCTATGTCAGTTGGAAGTTTAAGTGGGTCTGTGAGCCCTGATAGTCC</genome_strand>
        <mrna_strand>AAATCAGTTCAAAGCATCAATGGAAAACGTGGGATCAACCTCCGCCGCCGACGATAATACGCCGGCGCAACCAATCTCCTCCTCGACTCCTCTGGTCCCTTCATTTCCGGACCCTTCCGTCAGTACAACTGAATCGTGGAAACGCGGAAGACCAAACCCTGGGGTGACTACTCCTCCACCGTCTCAGGTCGCCGGCGGTGGACTTTCGTCTTCTGCGCAGCTGCAGGCAGATGAAACGGCGGTTTCTACTGGGAATAAGCAGCAAAGCGTTGATTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGAAGTAGCCGCTCTTGGATTTATGCAATCACACGTGATCAACATAAAAACTGGGGAG..............................................................................................................................................................GATATATTGGTCAAAATAATGTCATTCTGCGAAAGTACCTCTAAATCAATGTGTGGTCTGTCAACCAATGGGTCCACATCTAGTGTATCACTTCGCCGACCATATCAATCTGTAACATATAAG......................................................................................................................................................................................................................................GGAGTGTACGACATCCTTAGTCTGACTGGGTTCTTCTTTGTCTTGGAATCTGGTGGGCGACACAGCAGAGAAGGTGGCTTGACTGCGATACTTGGTAATGAAGAANATGGTGATGTTTGGGGAGGCAATGTGGATGGGCTCTTTACAGCAGCAACTGATGTTCAG.................................................................................GTTATTGTTAGTAGCTTCAGCACAGGAAAACAGGTGCAGTCAGANAACTTTGGTACACCAGCAAAATTAANTCCTATGNCAGTTNGAAGTTTAAGTGGGTCTGTGAGCCCTGATAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570862" ref_strand="+" ref_description="SGN-U570862 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>tgttggagtatttacagtacgtgaaaatagagcgaaaatcaatggaaaacgtgggatcgccctccgcctccgacgatggtacgccggtgcaacccatctcctcctcgactcctccggtgccgtcatttccagctctcctaggcaccaccgttagtggactttcgtcttctacggctgatgtagagactactcctcaggtcgccggctgtggactttcgtcttctatggcagaggtacagagtactccttcaacgtctcagttcgccggcagtggacttccgtctagtctttcaatgtccggcggtggactttcgtcttctacggtagatggagaaagtgctccttcaacgtctcaggtcgctggcagtggactttcatcttctacgcagccgcaggcagatgaagcggcagtttctagtgtatcaaacccagaagaatttggacctatgcaatcgcacgtgatcaaagcagaagctggggaggaaaaggatcttaaactggagagtgaaatcaattatctagtattgaagaggaagttggtgaagttcacaatcaaacagatcaattcattcatttctgccagaagtgtggtaggaataggtagctggggaacggtgtatgaaggaatgattgaaggattatctggactatctagtgatttgaatggggaaagaattgctgtcaaagtaggaaattatttctgcaaagaagaagaagttttgtatgatgagaattatattcaatggaagactgagattatgatactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="+" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="104560" stop="106555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104860" g_stop="105279" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105280" i_stop="105705" i_length="426">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105706" g_stop="105767" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="482" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105768" i_stop="105896" i_length="129">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105897" g_stop="106163" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="749" r_length="267" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106164" i_stop="106236" i_length="73">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106237" g_stop="106255" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="768" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="+" ref_id="SGN-U570862" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104860" e_stop="105279"/>
          <exon e_start="105706" e_stop="105767"/>
          <exon e_start="105897" e_stop="106163"/>
          <exon e_start="106237" e_stop="106255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGAGTAGTAACAGTACGTGAAAATAGAGCGAAAATCAATGGAAAACGTGGGATCGCCCTCCGCCTCCGACGATGGTACGCCGGTGCAACCCATCTCCTCCTCGACTCCTCCGGTGCCGTCATTTCCAGCTCTCCTAGGCACCACCGTTAGTGGACTTTCGTCTTCTACGGCTGATGTAGAGACTACTCCTCAGGTCGCCGGCTGTGGACTTTCGTCTTCTATGGCAGAGGTACAGAGTACTCCTTCAACGTCTCAGTTCGCCGGCAGTGGACTTCCGTCTAGTCTTTCAATGTCCGGCGGTGGACTTTCGTCTTCTACGGTAGATGGAGAAAGTGCTCCTTCAACGTCTCAGGTCGCTGGCAGTGGACTTTCATCTTCTACGCAGCCGCAGGCAGATGAAGCGGCAGTTTCTAGTGGTAAATTTACTTCTATACTCTGCACATGTCTAATTATTTCTGTATTTGTTTATTTGCGTTACCACTTGCATTGCTTTACTTTTATTATTAGGGCTATTTGTACCAAGACTTATATAGTAGCTACCAGTTTGACAGTTTTCTGCTCGATTAATTTGAATTTCTGGATTATTATTAAACTAATTTTCTTCTGCAAAATCTTTTTTCCAGTTGAATATTCTTCTGTATTTGTTTATTTGTGTTACAACTAGCATTGCTTTACTTCTATTATTATACCATAGGAATATCATTTCTGCTGGATTCTTGTTAAGTGGTGCGATTTACTTCTGCAAAATCTTTTTTCCCGTGCATCCAGTTGAATTTTCTTCTGCAAAATGTTGAACAATTGCCTGCTTTATGATCTTTCATACTAGTATATATAACTTGCAGTATCAAACCCAGAAGAATTTGGACCTATGCAATCGCACGTGATCAAGGCAGAAGCTGGGGAGGTGTGGTCTTAATTTTTTATACACATTATCAATCGACCCATAGAATTGCAAAATTGTTGATAGAAGCTGGGAGGTGTAGCTAGCATTTTTTTGTCGATCGATTAAAATAATCTTAATAATTTTTTGTAGGAAAAGGATCTTAAACTGGAGAGTGAAATCAATTATCTAGTATTGAAGAGGAAGTTGGTGAAGTTCACAATCAAACAGATCAATTCATTCATTTCTGCCAGAAGTGTGGTAGGAATAGGTAGCTGGGGAACGGTGTATGAAGGAATGATTGAAGGATTATCTGGACTATCTAGTGATTTGAATGGGGAAAGAATTGCTGTCAAAGTAGGAAATTATTTCTGCAAAGAAGAAG-AGTTTTGTAATGATGAGAATTATATTCAATGGAAGGTAATCCTGAATTCTACTGTGTTGTTTATACTCTTCTATCTTTACATAAACTAATTAGTCTATCTTTTTTTAGACTGAGATTATGATACTAT</genome_strand>
        <mrna_strand>TGTTGGAGTATTTACAGTACGTGAAAATAGAGCGAAAATCAATGGAAAACGTGGGATCGCCCTCCGCCTCCGACGATGGTACGCCGGTGCAACCCATCTCCTCCTCGACTCCTCCGGTGCCGTCATTTCCAGCTCTCCTAGGCACCACCGTTAGTGGACTTTCGTCTTCTACGGCTGATGTAGAGACTACTCCTCAGGTCGCCGGCTGTGGACTTTCGTCTTCTATGGCAGAGGTACAGAGTACTCCTTCAACGTCTCAGTTCGCCGGCAGTGGACTTCCGTCTAGTCTTTCAATGTCCGGCGGTGGACTTTCGTCTTCTACGGTAGATGGAGAAAGTGCTCCTTCAACGTCTCAGGTCGCTGGCAGTGGACTTTCATCTTCTACGCAGCCGCAGGCAGATGAAGCGGCAGTTTCTAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAAACCCAGAAGAATTTGGACCTATGCAATCGCACGTGATCAAAGCAGAAGCTGGGGAG.................................................................................................................................GAAAAGGATCTTAAACTGGAGAGTGAAATCAATTATCTAGTATTGAAGAGGAAGTTGGTGAAGTTCACAATCAAACAGATCAATTCATTCATTTCTGCCAGAAGTGTGGTAGGAATAGGTAGCTGGGGAACGGTGTATGAAGGAATGATTGAAGGATTATCTGGACTATCTAGTGATTTGAATGGGGAAAGAATTGCTGTCAAAGTAGGAAATTATTTCTGCAAAGAAGAAGAAGTTTTGT-ATGATGAGAATTATATTCAATGGAAG.........................................................................ACTGAGATTATGATACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600611" ref_strand="+" ref_description="SGN-U600611 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tggggtaagacgtgaagttcatatgaaatgttaggtggcttgattgagggagtaattcttggttanacgaatctataaaaacaaatataatgtgtaattaaaacattatgaatgaaccatgaaatttccctaagaattaatgttaaacttgatgaaaaagtgaanaaaaatcgtanaataaatttccagaacttgaaaacagactttaaaagaatctggaaatttttgaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="-" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="111797" stop="110962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111497" g_stop="111262" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="-" ref_id="SGN-U600611" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111497" e_stop="111262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTGAACATC</genome_strand>
        <mrna_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTANACGAATCTAT-AAAAACAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAANAAAAATCGTANAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAA-TTTTTGAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600611" ref_strand="+" ref_description="SGN-U600611 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tggggtaagacgtgaagttcatatgaaatgttaggtggcttgattgagggagtaattcttggttanacgaatctataaaaacaaatataatgtgtaattaaaacattatgaatgaaccatgaaatttccctaagaattaatgttaaacttgatgaaaaagtgaanaaaaatcgtanaataaatttccagaacttgaaaacagactttaaaagaatctggaaatttttgaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="-" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="120474" stop="119639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120174" g_stop="119939" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="-" ref_id="SGN-U600611" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120174" e_stop="119939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTGAACATC</genome_strand>
        <mrna_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTANACGAATCTAT-AAAAACAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAANAAAAATCGTANAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAA-TTTTTGAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572452" ref_strand="+" ref_description="SGN-U572452 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>attgccctccatccattatacatcctgatgacgaagaagaagaatagcttctatgttcaatttttttaatacaaacaactcttcttatttccttatttcataatctttatctagttcaatcgcttatttaaacatggtgaacttccttagaaaaaatcaataacctcaattttctcttttgattttaatctcaaaataagaatcaaactccataatcactaaaagaaattgtatatgcgattttacgtacaccgttattaattagagttagacagatgatcaaaggaattaagatttcttggtcatttataaaatgaaacgcggaaggccggagaagcatgctatggagagttccgcgagcactgatcagactttcgtctcctatgcagccgcaggaagatgtagcgagacctggaatgactactgctccgccgtctcaggtcgccggcggtggactttcgtctcctacgcagctgcaggcagatgtagcgacagccctgggatgactactctttcaccgtctcaggtcggcggcggtggactttcgtctcctacgcagctgcaggcagatgtagcaccgtctcaggtcggcggcggtgtagtttggtctcagagcaggcagatttagcgagccctgggatgactactccttcaccgtctacggcaggtgaagcggcgatttctgctgtgcctgcgaaaaggggtagaggaagaccgcctggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="+" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="121578" stop="122901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121878" g_stop="122601" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="+" ref_id="SGN-U572452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121878" e_stop="122601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCCCTCCATCCATTATACATCCTGATGACGAAGAAGAAGAATAGCTTCTATGTTCAATTTTTTTAATACAAACAACTCTTCTTATTTCCTTATTTCATAATCTTTATCTAGTTCAATCGCTTATTTAAACATGGTGAACTTCCTTAGAAAAAATCAATAACCTCAATTTTCTCTTTTGATTTTAATCTCAAAATAAGAATCAAACTCCATAATCACTAAAAGAAATTGTATATGCGATTTTACGTACACCGTTATTAATTAGAGTTAGACAGATGATCAAAGGAATTAAGATTTCTTGGTCATTTATAAAATGAAACGCGGAAGGCCGGAGAAGCATGCTATGGAGAGTTCCGCGAGCACTGATCAGACTTTCGTCTCCTATGCAGCCGCAGGAAGATGTAGCGAGACCTGGAATGACTACTGCTCCGCCGTCTCAGGTCGCCGGCGGTGGACTTTCGTCTCCTACGCAGCTGCAGGCAGATGTAGCGACAGCCCTGGGATGACTACTCTTTCACCGTCTCAGGTCGGCGGCGGTGGACTTTCGTCTCCTACGCAGCTGCAGGCAGATGTAGCACCGTCTCAGGTCGGCGGCGGTGTAGTTTGGTCTCAGAGCAGGCAGATTTAGCGAGCCCTGGGATGACTACTCCTTCACCGTCTACGGCAGGTGAAGCGGCGATTTCTGCTGTGCCTGCGAAAAGGGGTAGAGGAAGACCGCCTGGTT</genome_strand>
        <mrna_strand>ATTGCCCTCCATCCATTATACATCCTGATGACGAAGAAGAAGAATAGCTTCTATGTTCAATTTTTTTAATACAAACAACTCTTCTTATTTCCTTATTTCATAATCTTTATCTAGTTCAATCGCTTATTTAAACATGGTGAACTTCCTTAGAAAAAATCAATAACCTCAATTTTCTCTTTTGATTTTAATCTCAAAATAAGAATCAAACTCCATAATCACTAAAAGAAATTGTATATGCGATTTTACGTACACCGTTATTAATTAGAGTTAGACAGATGATCAAAGGAATTAAGATTTCTTGGTCATTTATAAAATGAAACGCGGAAGGCCGGAGAAGCATGCTATGGAGAGTTCCGCGAGCACTGATCAGACTTTCGTCTCCTATGCAGCCGCAGGAAGATGTAGCGAGACCTGGAATGACTACTGCTCCGCCGTCTCAGGTCGCCGGCGGTGGACTTTCGTCTCCTACGCAGCTGCAGGCAGATGTAGCGACAGCCCTGGGATGACTACTCTTTCACCGTCTCAGGTCGGCGGCGGTGGACTTTCGTCTCCTACGCAGCTGCAGGCAGATGTAGCACCGTCTCAGGTCGGCGGCGGTGTAGTTTGGTCTCAGAGCAGGCAGATTTAGCGAGCCCTGGGATGACTACTCCTTCACCGTCTACGGCAGGTGAAGCGGCGATTTCTGCTGTGCCTGCGAAAAGGGGTAGAGGAAGACCGCCTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595517" ref_strand="-" ref_description="SGN-U595517 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gatgactactctatcaccgtctcaggtcggcggcggtggactttcgtctcctacgcagctgcaggcagatgtagcaccgtctcaggtcggcggcggtgtagtttggtctcagagcaggcagatttagcgagccctgggatgactactccttcaccgtctacggcaggtgaagcggcgatttctgctgtgcctgcgaaaaggggtagaggaagaccgcctggttctaaaaccaagaagataagtgtttggttcagatattggacctatgcaatcaatcgcaggcgagcaaggtagaagctggggaggtgtgcctctcttttgataagcatgtattgttagctgcttctcaggatgtattggccaaaatagtgtcattctgcaaaggtactgttcccgatcatttatctgtctggtttcttctttgtcttggaatctggtgctacttgatggtgaagcagatggttatatcaatgtggcagggctccttacagcagcaactgatgttcaggttattgttggtagcttcaacacacacaagattttaacactcaaaagtgctatgtcagtcggaactttaagtccgcctgattaaactaagaagaagagagatgccctggagacgaaagaatgcttctcttgttattgataatacctatgtgatgtgagaatgtagtctgcagctctgcgattcttttttctatggatatcccgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="+" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="122079" stop="123982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122379" g_stop="122632" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122633" i_stop="123072" i_length="440">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123073" g_stop="123202" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="384" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123203" i_stop="123361" i_length="159">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123362" g_stop="123691" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="714" r_length="330" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="+" ref_id="SGN-U595517" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595517" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122379" e_stop="122632"/>
          <exon e_start="123073" e_stop="123202"/>
          <exon e_start="123362" e_stop="123691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACTACTCTTTCACCGTCTCAGGTCGGCGGCGGTGGACTTTCGTCTCCTACGCAGCTGCAGGCAGATGTAGCACCGTCTCAGGTCGGCGGCGGTGTAGTTTGGTCTCAGAGCAGGCAGATTTAGCGAGCCCTGGGATGACTACTCCTTCACCGTCTACGGCAGGTGAAGCGGCGATTTCTGCTGTGCCTGCGAAAAGGGGTAGAGGAAGACCGCCTGGTTCTAAAACCAAGAAGATAAGTGTTTGGTTCAGGTAAATATATATCTGAAGTGAACTTTTATATTATGCACATGTATAATTGTCAACAACTAGCCTTGCTTTACTTTTATTATTAGGGCTACGATTCTTTATACCATATGAATATTTCTGCTCGATTCTTGTTGAGTTCTGCAATTTTCTTGTGCAAAATCTTGAATATTCTTTTTATTTGTGTTACAACTAGCATTACGGGCTACAATTATGAATATTTCTGCTCGATTTTTGTTAAATTTTGCAATTTTCTTCTGCAAAATGTCGAATAATTGCCTGCTTTCATACTAGTATAAAGAAAACAAGGGATTTAATATTAAAGATTGATTTTGTCCTGTTAGCATCAGAAAAGGTCTCATTCCCGAATATGAATTTAGAGTGTAATAGCTGATAATTTGTATGTTCCTTTCTGCCAAATCTCTGATATACAACTTACACAGCAGATATTGGACCTATGCAATCAATCGCAGGCGAGCAAGGTAGAAGCTGGGGAGGTGTGCCTCTCTTTTGATAAGCATGTATTGTTAGCTGCTTCTCAGGATGTATTGGCCAAAATAGTGTCATTCTGCAAAGGTAGCTCAAAATCAGTGTGCGCCAATGGTTCCATGTCTAAAGTATTACTTCACAAAACAAGTGGAACTGAAACATATCTTCTTACAATAGAGAGTGGGGGGGTGTAGTTTTGCCTTGTGTGGTGATATGCTGATTTTATGTTTGAAACTTTTGGTGCAGGTACTGTTCCCGATCATTTATCTGTCTGGTTTCTTCTTTGTCTTGGAATCTGGTGCTACTTGATGGTGAAGCAGATGGTTATATCAATGTGGCAGGGCTCCTTACAGCAGCAACTGATGTTCAGGTTATTGTTGGTAGCTTCAACACACACAAGATTTTAACACTCAAAAGTGCTATGTCAGTCGGAACTTTAAGTCCGCCTGATTAAACTAAGAAGAAGAGAGATGCCCTGGAGACGAAAGAATGCTTCTCTTGTTATTGATAATACCTATGTGATGTGAGAATGTAGTCTGCAGCTTTGCAATTCTTTTTTATATGGATTGAGCAACA</genome_strand>
        <mrna_strand>GATGACTACTCTATCACCGTCTCAGGTCGGCGGCGGTGGACTTTCGTCTCCTACGCAGCTGCAGGCAGATGTAGCACCGTCTCAGGTCGGCGGCGGTGTAGTTTGGTCTCAGAGCAGGCAGATTTAGCGAGCCCTGGGATGACTACTCCTTCACCGTCTACGGCAGGTGAAGCGGCGATTTCTGCTGTGCCTGCGAAAAGGGGTAGAGGAAGACCGCCTGGTTCTAAAACCAAGAAGATAAGTGTTTGGTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGGACCTATGCAATCAATCGCAGGCGAGCAAGGTAGAAGCTGGGGAGGTGTGCCTCTCTTTTGATAAGCATGTATTGTTAGCTGCTTCTCAGGATGTATTGGCCAAAATAGTGTCATTCTGCAAAG...............................................................................................................................................................GTACTGTTCCCGATCATTTATCTGTCTGGTTTCTTCTTTGTCTTGGAATCTGGTGCTACTTGATGGTGAAGCAGATGGTTATATCAATGTGGCAGGGCTCCTTACAGCAGCAACTGATGTTCAGGTTATTGTTGGTAGCTTCAACACACACAAGATTTTAACACTCAAAAGTGCTATGTCAGTCGGAACTTTAAGTCCGCCTGATTAAACTAAGAAGAAGAGAGATGCCCTGGAGACGAAAGAATGCTTCTCTTGTTATTGATAATACCTATGTGATGTGAGAATGTAGTCTGCAGCTCTGCGATTCTTTTTTCTATGGATATCCCGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566310" ref_strand="+" ref_description="SGN-U566310 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157359795|emb|CAO68517.1| (e_value=0) unnamed; (*ATH) AT2G34750.1 (e_value=4e-141)  Symbol: None | RNA polymerase I specific transcription initiation factor RRN3 family protein, contains Pfam PF05327: RNA polymerase I specific transcription initiation factor RRN3; similar to RRN3 (GI:7670100) (Homo sapiens) similar to RNA polymeras... ; (*SWP) sp|Q5R4N9|RRN3_PONAB (e_value=4e-35) RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii GN=RRN3; ">
      <seq>tgccactgcctggcgccgctttggctcatctccagctctaccggcaactcactttctccttccccgacgaaatcaaagtaaaatttgcgcaatatttcaaccctagtcaacataatgggaatggaattacatgctgaaagtgcgggttgtgctgagatggagattgctgagattacggattcagatttgttcaaacttgttagacatgcccttaaatctgttatccagggtgatccagaccaatatgagcagcttcttcgtgttatgcaccctgatgaaggcgttttacctgatgtggccctactggtgacatgtttaaaagctctgtcaggatcagtttcttgtctagacattgttcaccataaatctcttattgcatctattttacaaatgagcatgtggaactatggaactgatgtaatggatgctttgatggaatttaatatatccttggctacatccagtgggcagtatgtagatctgtgcttggaaatgcttgtgagcaattttatgcctcctgattccttcatatcattgttgaatcagccacgtggcattctacggaagggccaagtcattgaccgtgtccattcaacattaacatacattgcaaagttagttcctctctcgcccttgagacttgagagaatgataacggagaggatgccacacattttcacaaaggaaccattgattttgatatatgtggagaacatgttaaaactagagagtggagcaattggtgatcttgttgggagaacaatgcttgtggcaattatggataagctaatagatttggatgtagatatagcatgggatgatatcttacaagaagatttcaccaaaggcatcttcgatatggagctgggagatctcgaatggccaatggatgatggccagcaaaatggtgacgagctccaaatatcttggatggaacggtattttagtggaaatctaaatgctcagaaattggatagtttaatcgtccttacctttgaacaccttaacatttgcaaagagagtggacgcctgagtcaggtttttcatactcttctccagtcttttcagcaaactgttttgatggcatacaagtctaaatttgctcagtttgtgttgttttacgcctgttcactggatcctgaaaactgcggtaggagatttgccgatacgctatttcataaatttaagtcaagtaaatatccagaatggagaatgagtgctgttgcctatcttgctagttatttggctcgtgcgaagtttttgcccatctcatttgttgctgaatatgtagaaagtttgctggaatggtgttcttcttattgcttcaaccagggtggcagcatcaatccaaaagctcacaaggaattctatgctgggtgccaggccttgatgtatgtactttgctttcgcatgagatcaatgcttgctattcctcgcatcagatcacgtatatcaaagcatatagaggatatcctgaggcatcctttgagcccattaatggtatgcttgccatcaatagtggaagaatttcttcggttggcaaaagtgactcatcttgatgtgccggataatgttgtatcaagtaacctgcttgagtcggaactttcaatggcttttggtggtagggagaggcttgacacatttttcccgtttgatccctgtcttctaatgaaatctgacagattcatccggccaaattttgtgtactggtcaatggttcggaactcttatgacaatgatgatgatgatgagggtactagtgatgaagacgatattgaaatctgtacagcagggaacgggataaatatacctaatgatggagctgcccgaagttatgatcaggatctcgatgaatttggtaataaaatgagcaaaatgtccataacacctaaagttgctcaatggggggaattacaatccggcaggcagatgccttcaagtttgctaccttgccctgattccttgtagagattgatctgcaccgtttgatgaccttgaaagaggaaatgcttgcccttccatggcaaagaagcgtcgtatcaaaatgcctgtcctggtccgtggttggttatggcaagacactgagattatgtgatatccattatatcctagattcatgagaggccttcaccctgcctgcctgcctgaatacatcccgcgagatgttaagaggtcaagttttgtgttcacagctaatgttatttgtaatatttagcaatagttggtttgatgatgagaactaaatgtgtaaacactcaaattctcttgtatttttcttgttggtgttaatatattatggtaagagtataatttaaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="-" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="131898" stop="123705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131598" g_stop="131520" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131519" i_stop="131013" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131012" g_stop="130864" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="228" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130863" i_stop="130274" i_length="590">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130273" g_stop="130193" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="309" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130192" i_stop="130081" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130080" g_stop="130009" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="381" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130008" i_stop="129905" i_length="104">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129904" g_stop="129833" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="453" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129832" i_stop="129755" i_length="78">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129754" g_stop="129518" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="690" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="129517" i_stop="129297" i_length="221">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="129296" g_stop="129186" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="801" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="129185" i_stop="129089" i_length="97">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="129088" g_stop="128975" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="915" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="128974" i_stop="127834" i_length="1141">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="127833" g_stop="127711" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="916" r_stop="1038" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="127710" i_stop="127631" i_length="80">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="127630" g_stop="127562" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1039" r_stop="1107" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="127561" i_stop="127410" i_length="152">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="127409" g_stop="127306" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1108" r_stop="1211" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="127305" i_stop="126513" i_length="793">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="126512" g_stop="126429" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1212" r_stop="1295" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="126428" i_stop="126294" i_length="135">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="126293" g_stop="126206" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1296" r_stop="1383" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="126205" i_stop="125724" i_length="482">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="125723" g_stop="125607" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1384" r_stop="1500" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="125606" i_stop="124982" i_length="625">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="124981" g_stop="124800" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1501" r_stop="1682" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="124799" i_stop="124644" i_length="156">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="124643" g_stop="124005" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1683" r_stop="2321" r_length="639" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="-" ref_id="SGN-U566310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131598" e_stop="131520"/>
          <exon e_start="131012" e_stop="130864"/>
          <exon e_start="130273" e_stop="130193"/>
          <exon e_start="130080" e_stop="130009"/>
          <exon e_start="129904" e_stop="129833"/>
          <exon e_start="129754" e_stop="129518"/>
          <exon e_start="129296" e_stop="129186"/>
          <exon e_start="129088" e_stop="128975"/>
          <exon e_start="127833" e_stop="127711"/>
          <exon e_start="127630" e_stop="127562"/>
          <exon e_start="127409" e_stop="127306"/>
          <exon e_start="126512" e_stop="126429"/>
          <exon e_start="126293" e_stop="126206"/>
          <exon e_start="125723" e_stop="125607"/>
          <exon e_start="124981" e_stop="124800"/>
          <exon e_start="124643" e_stop="124005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCACTGCCTGGCGCCGCTTTGGCTCATCTCCAGCTCTACCGGCAACTCACTTTCTCCTTCCCCGACGAAATCAAAGTGTATGATTCTCTTTTATCTACCTATTATCGTTCTTATGTATGCTTTTAGTAGACAATAACACTTTTTTCAGCGAAATTTAATGGTAAAAAACGATTTTTTGGTGAATTGGATTGTACCGTTCTGTGATTGCCTGAATGCTAAATTACCGATTATATCGGTGTTATTGCTGTTTTTGAATTGAGATATACTTGTGATTTCATTCTTGAATTGAGAGGTCTCAGTGATTACAAAGACACCAAACCAGTCATTGTTTTGGAGTCACTTTTAATGCACATTATAAAGATCAAAAAAACAATTTAGAACTTGATCTTAGAAGACTCTAATATTATTCTGTCTTGTTGGATGATCATCTTTTTGTAAATTGTACTTCCTCTTCCAAAAGAAAAAAGAAGAGGAAAGACTATTGCAAAGATGTGCATTTAACTGGTTCTTTTTCTTGAATAAGTCTTTCATGAGTTTATTGATGAAATGATTCAAGGGGTTTTCTACATGATTATGTTTCACAGAAAATTTGCGCAATATTTCAACCCTAGTCAACATAATGGGAATGGAATTACATGCTGAAAGTGCGGGTTGTGCTGAGATGGAGATTGCTGAGATTACGGATTCAGATTTGTTCAAACTTGTTAGACATGCCCTTAAATCTGTTATCCAGGTTGGATGCTTGGATACATATTTTAAAGGAAAATTATGTTCTTATAATTGCATTGGGTTGGGTTAGCTGGTGTGCATGCCACTGCATGGGAAATCAAGGTTCAACTGTATGAGTCAGCATAAACCTTGAATTTTTTATTTATTTTTGCCTTAATTCTTTGCTAGCCACGGTTTATGGTGGCTAAAGTACTTATCTAAAAACAAAAGGAGAAGTATCCTTCCTGCTAAGATGTCTCTTTTGAATAGTTGATTGAAGTCGACATAGGTTCTCCAGATTGATTGACCTGGTCGAGTGTTGACTTCCTTGGAGATTAAGAGTCAAATGTTTGGATGTTAGTTGTCTCTTTGTTATTCAGCAAGTACTAGCCAGCCAAATAATTTCATTGATTCCTTTTGCTGAAAATAATGTTTTTTTTGCCCATCCCCACTTCGTTTTCTTTCCTGGCAAACATCTTCACAAGATGTGAAATGTATGAACCTTCTCAGTTGCTGTTTTCACTGTTGCATGTGCAATGCAACTTCCTTTATAGTTTCCACATATTTACCATAGCACTGTAAAACAATTTTTATAGCTGAATGTTGGTATATTAGGGTGATCCAGACCAATATGAGCAGCTTCTTCGTGTTATGCACCCTGATGAAGGCGTTTTACCTGATGTGGCCCTACTGGTGGTATGTCTTTCTTAGAGATTGCACATATATTGGTCATCTTCCAATCACTTTTTGTGTTGGTTTCTTTTACTTTGTATTTTAATTATGGCTTGATTTTGGATTTGCATTTCAGACATGTTTAAAAGCTCTGTCAGGATCAGTTTCTTGTCTAGACATTGTTCACCATAAATCTCTTATTGCATCTGTAAGTTCTTAATAATTGTATTTCCTCTCTTAATCTGTGTTTTTGAAGAATACAGGTTGGCACTGGTAAAGATTGTATACTCAAAATGTGTTATTTGCTTGCAGATTTTACAAATGAGCATGTGGAACTATGGAACTGATGTAATGGATGCTTTGATGGAATTTAATATATCCTTGGTATGTGACTCTAGTGTTACTATCTTCAGTATTTTGGTCATTAGTCTGTATGATCATGACTCTTCTCCTATGCTGTAGGCTACATCCAGTGGGCAGTATGTAGATCTGTGCTTGGAAATGCTTGTGAGCAATTTTATGCCTCCTGATTCCTTCATATCATTGTTGAATCAGCCACGTGGCATTCTACGGAAGGGCCAAGTCATTGACCGTGTCCATTCAACATTAACATACATTGCAAAGTTAGTTCCTCTCTCGCCCTTGAGACTTGAGAGAATGATAACGGAGAGGATGCCACACATTTTCACAAAGGAACCAGTAAGTGCAGATTCATACTTTCTTTACAAAGAAAATTCTTCCATTATGTAGCTTATTGCAAGTGTTCCAATCCTACTGACTTTTGCTTGAACTAGTTAAACCTGCATTGCCAGAACCTCGTTGTTGATACACTTTCTTCTGTGTTGTGTTCCTTATTGCTGGAAGCTCCTAATTTCTTAGCCATGTTTCCTCCTCTCCGCCCCCTTTCCCCTCACGTGCAGTTGATTTTGATATATGTGGAGAACATGTTAAAACTAGAGAGTGGAGCAATTGGTGATCTTGTTGGGAGAACAATGCTTGTGGCAATTATGGATAAGCTAATAGATTTGGATGTAAGTTGTTTGAAATCAACCCTTCACTCAGGCACTGTGTAAATTCTTAAAGGTGTTGCACTAAGTTAATTTGGTTCTTGTCCTTGGGTTTTCTTAGGTAGATATAGCATGGGATGATATCTTACAAGAAGATTTCACCAAAGGCATCTTCGATATGGAGCTGGGAGATCTCGAATGGCCAATGGATGATGGCCAGCAAAATGGTGACGAGGTGATTTTCATCTTTCAACTGATATTCTTCTGTATTTTAGTGCTGGCATTGCCACTAAATTTGTTTCCTTGACTTCTTTTTTGTGTATGGGGTGTTTTAGTGCATCCGTAAATATCCCGTTTGATGTTAGATGATTGGGTGAATTTTTTTATAGAACCATGTTTAGCCCTGTCCATACGTTGCATTATTCTGTTCACTTCTCTCCTTTTATTTGATTGAATTTTTTCATGACGGTAATATGGAAGGAGAGGAAAAGGAGATCGTATGAGGGGAGGATGATTTTGTACATGCGTGGAGTAGCCTTGTGTCTCTAATTTCTTTTGGTGCATCCGTAAGGATCCTGTTTGGTGTTGGATGATTAGGTGAAATTTTTTATAGAACCATGTTTAGCCCAGGTTTCTTTAATTTTGGGTATAATACTTGCATAGAGGGATTCCCAATATGAATAAAATCATTAACCTTATTAAAAATGATTGCTCTTAGTCTTGAAGAGACGTAGAGTAGATAAAGATTACATGATGATTCAGAAGAGGGTTTCCTAGATTGTTTCTTTTTAAATCTGCGGTGACTGTCAACCTTGAGAAAAATTTGCCTTTTTGACACTCTGCGCAAACTTTAACCAGTGTGTAAGTGGTTAAAAGGACTATTTCTTCAAATCTATTTTTCCCTAATAAAGGTCAGTTTGCCCACAACACCTTTTTCACCCTTCCCATATTCACGTGTAGACAACTTTCGTTTTTCACAGTGTTGCTCAACCATTTAAAGGTTGCATTCAATTAGATTTGGGTATCAATACAAATAGGGTGAGTCATTCTTTCCTGTTGTGTTAAGTTCTATCCCTTCTTTTCCCTGATGAACTAGTCCGTGGTTGTCTTGTATCAATACAATCGTTACGAATATCAGAAATACTGTATTGTATTGTATGCTAGGCTTATATTTTAATGTTTGATTTTCATCAATTTTTTTATTTTATATATTTTTTTTAAAGTAAAGTTATTTGAGGGCTCATTGTGGGTATTGAACCCACGACCAGTTGACCACAAGGTTAAGGGTTGTACGGTCTACTGACTGAGCTCATCTATATTTTTAATCTGGTATTTGTCATCTGCCCTTTATATACTGACTAAGTTTTTACTTCCAGCTCCAAATATCTTGGATGGAACGGTATTTTAGTGGAAATCTAAATGCTCAGAAATTGGATAGTTTAATCGTCCTTACCTTTGAACACCTTAACATTTGCAAAGAGAGTGGACGCCTGAGTCAGGTAAAGTGAATGCATCAGCGTGTAATTTCTAACTCCGCTCCGTGCTTTTCTTACTTCTATTTTTCTTTCGAATGGTGTAGGTTTTTCATACTCTTCTCCAGTCTTTTCAGCAAACTGTTTTGATGGCATACAAGTCTAAATTTGCTCAGGTAACATGCATGATTATCATCCTCCACTACATAGGCTTGTCTTTCTTTTCCCAGCACTTCTAAATTTGATGAACACGTTGTTAGTTAATTTGTCTTACTTCAATGTACTTATTGCCTTTCTGAACTTAAATTTGTTGATCCTGTTATTGCAGTTTGTGTTGTTTTACGCCTGTTCACTGGATCCTGAAAACTGCGGTAGGAGATTTGCCGATACGCTATTTCATAAATTTAAGTCAAGTAAATATCCAGAATGGAGGTGAGGACTAAAGAATTTTGAATCTTGGGTTTCTTTTTCTTATCCTTCTCACTTGTTTCGCCCTGACATTCCGTCTTGTTGATCAATATGTTTAGTCATGTATTATGGATACACAACTGCTTGCTAAGTTTGGTCTTCTGTCTGAGTGTTTAGCATGTAACTCTTTATGATACTGGGTGCATGAACTCAAGACCATTTCATCTTAAAACATAATTTTGGAAGCTAAAATCAACAGTCTGCAGTCCCTGTTTATTAGAGAATTTTCTTTACAGAACTCTGCGTTCATCTCTCCTCTCTTATTTAATAAATATGCTATATGTTGGAAGTGTTTAGATTTGTTGGGGTATTGCTTGGGTCTCCATATTATTCCCTTATTGATACTGCCATTGAATTTTTGTGCACTCAAAGTCAAAGTAATATTCCTTAGTCAAACTAGCAGACTTTCTGCATAGGCTGCTAATATAACATGCCATCAAAAATTCAAAATAGTGGTCCTTAAAACTCAGATTATCGTGCTTCAGTAACCTGTCGGTTGTGTTGGATAAGACAGAAGGCATTTGCCATTTTTTTACTTGTCAGAAGGTTTGACGTGTTTTTTTTTGTGATCTTTTGCTTAAAATTTTAAATGCAACTGAACACATTTGATACTCTCTTGAGTGTGGATAACTCTGATAGTTCTTTGATTATTAGTTCATCAAGGGGTGGGGCTGTCTGGTAGTTATATATTTTCTAGTTATATTCATTTTGTTCATGGCTGTTTGGAGGAACTAATTCTTTTATTGGTCTCTTGCAGAATGAGTGCTGTTGCCTATCTTGCTAGTTATTTGGCTCGTGCGAAGTTTTTGCCCATCTCATTTGTTGCTGAATATGTAGAAAGGTTTATCCGATGACCAAACATCTTCAACTCTATATTCAATATATTTATAGTTTTGAGTTGCTTCTATCAGTCAGTAATGAATTCAAATGCAAGTCAAGTCATAGATTTCTTTTCTTCTTCTGTGTGAGGGTTCAGTTTGCTGGAATGGTGTTCTTCTTATTGCTTCAACCAGGGTGGCAGCATCAATCCAAAAGCTCACAAGGAATTCTATGCTGGGTGCCAGGTACTCGACAGCTTTGTTCTAGTCAGAACCTTCAGTAGTCTGTTCCTCTCCCTCATTCACAAAGACCTTCATTCTTTTTATATTGTTTGAGGAGTGGGGGATTTTTTCTGTACCTTTCCGTGGACCTATTTGAAGGCTTCCCAAATTATATTCCTGGTGTTAATTTTATTTATGTATCATTTATGTGCCAGGAAGCGAAAAGGGAAGTGTTAGAAAGTTAATTTTTTTTTCCTGTGAATTACAGTGAACTTCGTAGAGAAGTGGTTAAAAAATTTCAATTAAAAGGACTTTTTAATTATAAAGAATTAAAGACTTCTTTCAAATTAAGTCTGCAAAATATGTAGGGAATTTGAAGGAAGACTTACCTTGGAAACCAATCAACGCGAGAGAATAGTTTTTCATTTTTTTTTTCTTTAGCATGTCACTTTTAGAAATTTTTTTGATATCCAAATAAATTGTTACTGATACTGTTCATTATGCAGGCCTTGATGTATGTACTTTGCTTTCGCATGAGATCAATGCTTGCTATTCCTCGCATCAGATCACGTATATCAAAGCATATAGAGGATATCCTGAGGCATCCTTTGAGCCCATTAATGGTAATGTGTTCTTTTTCTTAGTACATGACTCTAACATTTCGTTTTATTCATCCCTGGCAAGCTTAGACAACATAGGAAAAAGGGGTCATTGAGGATTCATATAAATGTCCCTTTGATCTTAGGTCTTGGTTGTTGTAAGCTTCGATAACTAAAGGCATGTAGAGGAAATTTTAATTGAATTAAAATCTCTTGGAATGCATGTGGATTATAGTGGAAGCTAAGTATTCATATAGCTGATACAAGCTAGGTGATATCAAGGTATATAGTCACTGGTTCCATCTGCATTAGACCGGTGTTTGAAAGTGGTCTTATAAGTTTTTTGTTAGATATTTATGTTAGTGTTGGAATAAACATGAGATTTAAAATCTCTAATTTTGGAGGACCCTAAGTTGTTCAAAAGACAAATAATTGAGTGTTGGTGGAACAGCCCCAAATAAAGTGGAGTAGTTGATAACCAATCCCAAATTGGGATTAAGGGGTAGTTATTGTTTAAAAGTTTCTTGTGTTTTTTCTTTGATATTAGTGGACTCAAATGAGAAGTCATCCAAGGCTTGTATGTGCTTCTGTTAGTGGAATTCTCTACTTCTTTGTTAATTCGAGTGTCTAATGAATATTTTACCTACAGGTATGCTTGCCATCAATAGTGGAAGAATTTCTTCGGTTGGCAAAAGTGACTCATCTTGATGTGCCGGATAATGTTGTATCAAGTAACCTGCTTGAGTCGGAACTTTCAATGGCTTTTGGTGGTAGGGAGAGGCTTGACACATTTTTCCCGTTTGATCCCTGTCTTCTAATGAAATCTGACAGGTTTGTTTCTTTATTGGCATTTTTGACTTCTCTTGTTCATTTTAATTGGTTGGTTGGATATTGAAGCTCCTTGCTTACCTGAGAGTGAAAATTTTCTGGTGATTGTTCTATAATTAGTGGATAATTTTGTCTCATGTTGCCATATGTTTTTGGAAGATTCATCCGGCCAAATTTTGTGTACTGGTCAATGGTTCGGAACTCTTATGACAATGATGATGATGATGAGGGTACTAGTGATGAAGACGATATTGAAATCTGTACAGCAGGGAACGGGATAAATATACCTAATGATGGAGCTGCCCGAAGTTATGATCAGGATCTCGATGAATTTGGTAATAAAATGAGCAAAATGTCCATAACACCTAAAGTTGCTCAATGGGGGGAATTACAATCCGGCAGGCAGATGCCTTCAAGTTTGCTACCTTGCCCTGATTCCTTGTAGAGATTGATCTGCACCGTTTGATGACCTTGAAAGAGGAAATGCTTGCCCTTCCATGGCAAAGAAGCGTCGTATCAAAATGCCTGTCCTGGTCCGTGGTTGGTTATGGCAAGACACTGAGATTATGTGATATCCATTATATCCTAGATTCATGAGAGGCCTTCACCCTGCCTGCCTGCCTGAATACATCCCGCGAGATGTTAAGAGGTCAAGTTTTGTGTTCACAGCTAATGTTATTTGTAATATTTAGCAATAGTTGGTTTGATGATGAGAACTAAATGTGTAAACACTCAAATTCTCTTGTATTTTTCTTGTTGGTGTTAATATATTATGGTAAGAGTATATTTTAAATGTTT</genome_strand>
        <mrna_strand>TGCCACTGCCTGGCGCCGCTTTGGCTCATCTCCAGCTCTACCGGCAACTCACTTTCTCCTTCCCCGACGAAATCAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTGCGCAATATTTCAACCCTAGTCAACATAATGGGAATGGAATTACATGCTGAAAGTGCGGGTTGTGCTGAGATGGAGATTGCTGAGATTACGGATTCAGATTTGTTCAAACTTGTTAGACATGCCCTTAAATCTGTTATCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATCCAGACCAATATGAGCAGCTTCTTCGTGTTATGCACCCTGATGAAGGCGTTTTACCTGATGTGGCCCTACTGGTG................................................................................................................ACATGTTTAAAAGCTCTGTCAGGATCAGTTTCTTGTCTAGACATTGTTCACCATAAATCTCTTATTGCATCT........................................................................................................ATTTTACAAATGAGCATGTGGAACTATGGAACTGATGTAATGGATGCTTTGATGGAATTTAATATATCCTTG..............................................................................GCTACATCCAGTGGGCAGTATGTAGATCTGTGCTTGGAAATGCTTGTGAGCAATTTTATGCCTCCTGATTCCTTCATATCATTGTTGAATCAGCCACGTGGCATTCTACGGAAGGGCCAAGTCATTGACCGTGTCCATTCAACATTAACATACATTGCAAAGTTAGTTCCTCTCTCGCCCTTGAGACTTGAGAGAATGATAACGGAGAGGATGCCACACATTTTCACAAAGGAACCA.............................................................................................................................................................................................................................TTGATTTTGATATATGTGGAGAACATGTTAAAACTAGAGAGTGGAGCAATTGGTGATCTTGTTGGGAGAACAATGCTTGTGGCAATTATGGATAAGCTAATAGATTTGGAT.................................................................................................GTAGATATAGCATGGGATGATATCTTACAAGAAGATTTCACCAAAGGCATCTTCGATATGGAGCTGGGAGATCTCGAATGGCCAATGGATGATGGCCAGCAAAATGGTGACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAATATCTTGGATGGAACGGTATTTTAGTGGAAATCTAAATGCTCAGAAATTGGATAGTTTAATCGTCCTTACCTTTGAACACCTTAACATTTGCAAAGAGAGTGGACGCCTGAGTCAG................................................................................GTTTTTCATACTCTTCTCCAGTCTTTTCAGCAAACTGTTTTGATGGCATACAAGTCTAAATTTGCTCAG........................................................................................................................................................TTTGTGTTGTTTTACGCCTGTTCACTGGATCCTGAAAACTGCGGTAGGAGATTTGCCGATACGCTATTTCATAAATTTAAGTCAAGTAAATATCCAGAATGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGTGCTGTTGCCTATCTTGCTAGTTATTTGGCTCGTGCGAAGTTTTTGCCCATCTCATTTGTTGCTGAATATGTAGAAAG.......................................................................................................................................TTTGCTGGAATGGTGTTCTTCTTATTGCTTCAACCAGGGTGGCAGCATCAATCCAAAAGCTCACAAGGAATTCTATGCTGGGTGCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGATGTATGTACTTTGCTTTCGCATGAGATCAATGCTTGCTATTCCTCGCATCAGATCACGTATATCAAAGCATATAGAGGATATCCTGAGGCATCCTTTGAGCCCATTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCTTGCCATCAATAGTGGAAGAATTTCTTCGGTTGGCAAAAGTGACTCATCTTGATGTGCCGGATAATGTTGTATCAAGTAACCTGCTTGAGTCGGAACTTTCAATGGCTTTTGGTGGTAGGGAGAGGCTTGACACATTTTTCCCGTTTGATCCCTGTCTTCTAATGAAATCTGACAG............................................................................................................................................................ATTCATCCGGCCAAATTTTGTGTACTGGTCAATGGTTCGGAACTCTTATGACAATGATGATGATGATGAGGGTACTAGTGATGAAGACGATATTGAAATCTGTACAGCAGGGAACGGGATAAATATACCTAATGATGGAGCTGCCCGAAGTTATGATCAGGATCTCGATGAATTTGGTAATAAAATGAGCAAAATGTCCATAACACCTAAAGTTGCTCAATGGGGGGAATTACAATCCGGCAGGCAGATGCCTTCAAGTTTGCTACCTTGCCCTGATTCCTTGTAGAGATTGATCTGCACCGTTTGATGACCTTGAAAGAGGAAATGCTTGCCCTTCCATGGCAAAGAAGCGTCGTATCAAAATGCCTGTCCTGGTCCGTGGTTGGTTATGGCAAGACACTGAGATTATGTGATATCCATTATATCCTAGATTCATGAGAGGCCTTCACCCTGCCTGCCTGCCTGAATACATCCCGCGAGATGTTAAGAGGTCAAGTTTTGTGTTCACAGCTAATGTTATTTGTAATATTTAGCAATAGTTGGTTTGATGATGAGAACTAAATGTGTAAACACTCAAATTCTCTTGTATTTTTCTTGTTGGTGTTAATATATTATGGTAAGAGTATAATTTAAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564078" ref_strand="+" ref_description="SGN-U564078 Tomato 200607#2 [6 ESTs aligned] ">
      <seq>gaatcaaattattgtcttatcattaactgcctaataatttttatttatttttcaatatgaaaatatttacaaattttataagttaggataaataaattaaaatgattttttttttcttttaggtatataancccacgatggatgtcgttggattttctacagaaccgaacaagacacatttctgtcttagataactcatcctttctcttccctttcttcttcttcttcttcttctctctgttctccacatttcacgtatactttcagaattttttttggatttactttggacagaaaagctactaaatagtgtgagtcaatttctttccttaaataattgtttggagttttttttttttttnc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="+" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="137672" stop="138634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137972" g_stop="138334" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="+" ref_id="SGN-U564078" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137972" e_stop="138334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAAATTATTGTCTTATCATTAACTGCCTAATAATTTTTATTTATTTTTCAATATGAAAATATTTACAAATTTTATAAGTTAGGATAAATAAATTAAAATGATTTTTTTTTTCTTTTAGGTATATAAACCCACGATGGATGTCGTTGGATTTTCTACAGAACCGAACAAGACACATTTCTGTCTTAGATAACTCATCCTTTCTCTTCCCTTTCTTCTTCTTCTTCTTCTTCTCTCTGTTCTCCACATTTCACGTATACTTTCAGAATTTTTTTTGGATTTACTTTGGACAGAAAAGCTACTAAATAGTGTGAGTCAATTTCTTTCCTTAAATAATTGTTTGGAGTTTTTTTTTTTTTTTC</genome_strand>
        <mrna_strand>GAATCAAATTATTGTCTTATCATTAACTGCCTAATAATTTTTATTTATTTTTCAATATGAAAATATTTACAAATTTTATAAGTTAGGATAAATAAATTAAAATGATTTTTTTTTTCTTTTAGGTATATAANCCCACGATGGATGTCGTTGGATTTTCTACAGAACCGAACAAGACACATTTCTGTCTTAGATAACTCATCCTTTCTCTTCCCTTTCTTCTTCTTCTTCTTCTTCTCTCTGTTCTCCACATTTCACGTATACTTTCAGAATTTTTTTTGGATTTACTTTGGACAGAAAAGCTACTAAATAGTGTGAGTCAATTTCTTTCCTTAAATAATTGTTTGGAGTTTTTTTTTTTTTTNC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564077" ref_strand="+" ref_description="SGN-U564077 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157344964|emb|CAO71692.1| (e_value=0) unnamed; (*ATH) AT4G35470.1 (e_value=3e-169)  Symbol: None | leucine-rich repeat family protein, similar to Leucine-rich repeat protein SHOC-2 (Ras-binding protein Sur-8) (SP:Q9UQ13 ){Homo sapiens},PIR:T12704; contains Pfam PF00560: Leucine Rich Repeat domains | chr4:16846306-16849151 FORWARD |... ; (*SWP) sp|Q6GPJ5|LRC40_XENLA (e_value=2e-39) Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40; ">
      <seq>ggggacagaaccgaacaagacacatttctgtcttagataactcatcctttctcttccctttcttcttcttcttcttcttctctctgttctccacatttcacgtatactttcagaattttttttggatttactttggacagaaaagctactaaatagtagaattattgaaaatggggtcgttaggaatgtcgattgatgagattgtgcaagaaattatgagaattcatggatctctaccgacaagaccatcgattgatgaggttgaagcagcaagagctttaattggaaatctggagaaagaagatcagttgaaaatagaagctatcatgaggcaaaataaaaggaaaggtgttccagaagagctattcaaaattttgcaagagatgcagaggaacgctcttctttttcagagtaaagaacaaaagagggaggccttgaaacttttagatctcgagaatattcacagtgtgttcgacgatttgattcagagagctaccaaatgtttgccttctaaatctcatgataatgacccgtcttcttcttcttcttcaattgaacctaatgatttgtctttggcaaaccaagtttccttctccggcaacagcaacagacgccttgaatctccggcaaccacaactgcagctgcttcttcgtcgagtttttataactcaaaagactctattaaagcgtccgaactgtatagtagagacgacagttacttgaataaggcaaaagccacgtttcttgtggatggaattggtgttggacttcgatctggggatgcttcatcagggcctaagattgttgattccaccttaaagccgtcggcgataagtggtcaagatggtgagaaattaagtttgattaagcttgctagtatgattgaagtgtcatccaaaaaaggaagtagagagcttatgctacggaataagttatctgatcaagtagaatggcttccagattctatagggaagctatcgagtttgatcactttggatctgtctgagaatcgcattacggtcctacccaccaccataggggggcttttatcattgcaaaagctagatttgcactcaaacaaaattgttgaactgcctgattgtattggagatcttcttaacttggtgtatcttgatctcagtggaaataacttgaagttgttgcccgcgagttttgctaggttagctcaccttcaagaacttgatttgagctctaacatgctatcagtactccctgagacaattggctccttagtaagtcttaagaaattgattgtggaaactaatgaccttgaggaacttcctcacactattggtcaatgtacttcgctcaaagagcttcgtgtggactacaatcatcttaaagcacttcctgaagcagtgggacgacttgagtcgttggagattctgactgcgcggtacaataacatcagactgttgcctacaactatgtcatcccttacaagtttgaaagagctgaatgttagtttcaatgaaatcgaatcagtgcctgagagcttgtgttttgctacttcactggtaaagctgaacataagcaacaattttgcagacctgagatcactaccaaggtccattggtaaccttgagttgctcgaagaattggacatgagtaacaaccagatacgcgttcttccagattcttttaggatgctctcaagtttgcgggtccttaaaactgatggaaatcctttggaagttccaccaggaagcgtccttgagaagggagcacaggttgttgtacaatatatgtctgatctggttgctaatagagatgtaaagacgcaacccgcaaagaagaagaagaaatcatggactcatatatgctgtttttcaagttccaacaaacgccagcgcaatggcagtatggactatgttaatgcatgatgtgttccagttcctcataaatctgggaaatgagctgtgatttggctggacgaaagctgcaaaaatttcagttgaattcaaatatttttgccagcgagattcaatcaactttcttgttgttccagatcactgccacgtggtttttttaaattctcatttcattgtgataattcttttaatgctctttcctgtattttcctcgattatgtaaaaatatgaaatgagatgtaaaatcttatcttattttttgactttcaatatattcaatggatttctgatttgttgaataaattgcaaaagtcagcctgaattaatttgtcattatccaaccgacggcgaatttgttttgaatcccgtcatattttaaataagaaaatatgttgttaataggtcaaataaagatggcttagagccgtggatcgtggatcaatgagattgttttactcttaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="+" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="137830" stop="141575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138126" g_stop="138282" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138283" i_stop="138664" i_length="382">
            <donor d_prob="0.342" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138665" g_stop="139344" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="837" r_length="680" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="139345" i_stop="139484" i_length="140">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139485" g_stop="140398" g_length="914"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="1751" r_length="914" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140399" i_stop="140477" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140478" g_stop="140655" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1752" r_stop="1929" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140656" i_stop="140847" i_length="192">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140848" g_stop="141275" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1930" r_stop="2357" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="+" ref_id="SGN-U564077" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138126" e_stop="138282"/>
          <exon e_start="138665" e_stop="139344"/>
          <exon e_start="139485" e_stop="140398"/>
          <exon e_start="140478" e_stop="140655"/>
          <exon e_start="140848" e_stop="141275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGAACCGAACAAGACACATTTCTGTCTTAGATAACTCATCCTTTCTCTTCCCTTTCTTCTTCTTCTTCTTCTTCTCTCTGTTCTCCACATTTCACGTATACTTTCAGAATTTTTTTTGGATTTACTTTGGACAGAAAAGCTACTAAATAGTGTGAGTCAATTTCTTTCCTTAAATAATTGTTTGGAGTTTTTTTTTTTTTTTCTCTTGTTGTTTTTGAAAACAGTTGTTCTCCATATAGGAAAATACGGCGAAAAATAAGCTTTACTTTGCATGCTTTCATGTGGGTAAAGGTTTGAATTTGCTGTCATCGTTGATTGGCGCTTTCTAGAAACTTGTAGAAACGAAAAAACTTAGCTGCGGTTTTCATTTTTTCTTGATCTGCTGATTGGTTTGGATGGAGCGAAATTCCTTGCTTTGAATAATACATACAGAACAAGGAGAAAGGGCAGTCTGAGTTTAATTTTGTGGCCGGAGTTGTATTTATGTCGAATTAATTTATGTGGGTGTTTTTTTGTTTTCGATAAATTTTCAGAGAATTATTGAAAATGGGGTCGTTAGGAATGTCGATTGATGAGATTGTGCAAGAAATTATGAGAATTCATGGATCTCTACCGACAAGACCATCGATTGATGAGGTTGAAGCAGCAAGAGCTTTAATTGGAAATCTGGAGAAAGAAGATCAGTTGAAAATAGAAGCTATCATGAGGCAAAATAAAAGGAAAGGTGTTCCAGAAGAGCTATTCAAAATTTTGCAAGAGATGCAGAGGAACGCTCTTCTTTTTCAGAGTAAAGAACAAAAGAGGGAGGCCTTGAAACTTTTAGATCTCGAGAATATTCACAGTGTGTTCGACGATTTGATTCAGAGAGCTACCAAATGTTTGCCTTCTAAATCTCATGATAATGACCCGTCTTCTTCTTCTTCTTCAATTGAACCTAATGATTTGTCTTTGGCAAACCAAGTTTCCTTCTCCGGCAACAGCAACAGACGCCTTGAATCTCCGGCAACCACAACTGCAGCTGCTTCTTCGTCGAGTTTTTATAACTCAAAAGACTCTATTAAAGCGTCCGAACTGTATAGTAGAGACGACAGTTACTTGAATAAGGCAAAAGCCACGTTTCTTGTGGATGGAATTGGTGTTGGACTTCGATCTGGGGATGCTTCATCAGGGCCTAAGATTGTTGATTCCACCTTAAAGCCGTCGGCGATAAGTGGTATGTTACATCTATTTGCTGCACCGTATTTGGTTATGTATGCATTTCTAGTGAATTTGATTATATAACTTGTTGTTTTGTTGTGTTGATTCAAAGTTCGTATTTTTAATCAAAAAAGACACTGGTTTCTTTGTTTGTAGGTCAAGATGGTGAGAAATTAAGTTTGATTAAGCTTGCTAGTATGATTGAAGTGTCATCCAAAAAAGGAAGTAGAGAGCTTATGCTACGGAATAAGTTATCTGATCAAGTAGAATGGCTTCCAGATTCTATAGGGAAGCTATCGAGTTTGATCACTTTGGATCTGTCTGAGAATCGCATTACGGTCCTACCCACCACCATAGGGGGGCTTTTATCATTGCAAAAGCTAGATTTGCACTCAAACAAAATTGTTGAACTGCCTGATTGTATTGGAGATCTTCTTAACTTGGTGTATCTTGATCTCAGTGGAAATAACTTGAAGTTGTTGCCCGCGAGTTTTGCTAGGTTAGCTCACCTTCAAGAACTTGATTTGAGCTCTAACATGCTATCAGTACTCCCTGAGACAATTGGCTCCTTAGTAAGTCTTAAGAAATTGATTGTGGAAACTAATGACCTTGAGGAACTTCCTCACACTATTGGTCAATGTACTTCGCTCAAAGAGCTTCGTGTGGACTACAATCATCTTAAAGCACTTCCTGAAGCAGTGGGACGACTTGAGTCGTTGGAGATTCTGACTGCGCGGTACAATAACATCAGACTGTTGCCTACAACTATGTCATCCCTTACAAGTTTGAAAGAGCTGAATGTTAGTTTCAATGAAATCGAATCAGTGCCTGAGAGCTTGTGTTTTGCTACTTCACTGGTAAAGCTGAACATAAGCAACAATTTTGCAGACCTGAGATCACTACCAAGGTCCATTGGTAACCTTGAGTTGCTCGAAGAATTGGACATGAGTAACAACCAGATACGCGTTCTTCCAGATTCTTTTAGGATGCTCTCAAGTTTGCGGGTCCTTAAAACTGATGGAAATCCTTTGGAAGTTCCACCAGGAAGCGTCCTTGAGAAGGGAGCACAGGTTTAGTTTTGTTTCGTTTAATCATTTTGTTATTTTAACATGATTGGATATATCGATCACTAATGTTTTATTTGCTCAGGTTGTTGTACAATATATGTCTGATCTGGTTGCTAATAGAGATGTAAAGACGCAACCCGCAAAGAAGAAGAAGAAATCATGGACTCATATATGCTGTTTTTCAAGTTCCAACAAACGCCAGCGCAATGGCAGTATGGACTATGTTAATGCATGATGTGTTCCAGTTCCTCATAAATCTGGTATGATTATACATTTCTCCTTCTTGATAAACTTTCTTTTTATCTCTTAAATTTTGTGTCCAGTCAAATAAAAAAGTTCGTAATGGTTAATAAATGGGGATGGTGCATTATACATGGTGCTGATTTGTGTTAATTAGAATAATGAAAATGAAAGGGTAACGGCTCACATGATGTCTGTGCTATCCGTTGTAGGGAAATGAGCTGTGATTTGGCTGGACGAAAGCTGCAAAAATTTCAGTTGAATTCAAATATTTTTGCCAGCGAGATTCAATCAACTTTCTTGTTGTTCCAGATCACTGCCACGTGGTTTTTTTAAATTCTCATTTCATTGTGATAATTCTTTTAATGCTCTTTCCTGTATTTTCCTCGATTATGTAAAAATATGAAATGAGATGTAAAATCTTATCTTATTTTTTGACTTTCAATATATTCAATGGATTTCTGATTTGTTGAATAAATTGCAAAAGTCAGCCTGAATTAATTTGTCATTATCCAACCGACGGCGAATTTGTTTTGAATCCCGTCATATTTTAAATAAGAAAATATGTTGTTAATAGGTCAAATAAAGATGGCTTAGAGCCGTGGATCGTGGATCAATGAGATTGTTTTACTCTTAATTA</genome_strand>
        <mrna_strand>GGGGACAGAACCGAACAAGACACATTTCTGTCTTAGATAACTCATCCTTTCTCTTCCCTTTCTTCTTCTTCTTCTTCTTCTCTCTGTTCTCCACATTTCACGTATACTTTCAGAATTTTTTTTGGATTTACTTTGGACAGAAAAGCTACTAAATAGT..............................................................................................................................................................................................................................................................................................................................................................................................AGAATTATTGAAAATGGGGTCGTTAGGAATGTCGATTGATGAGATTGTGCAAGAAATTATGAGAATTCATGGATCTCTACCGACAAGACCATCGATTGATGAGGTTGAAGCAGCAAGAGCTTTAATTGGAAATCTGGAGAAAGAAGATCAGTTGAAAATAGAAGCTATCATGAGGCAAAATAAAAGGAAAGGTGTTCCAGAAGAGCTATTCAAAATTTTGCAAGAGATGCAGAGGAACGCTCTTCTTTTTCAGAGTAAAGAACAAAAGAGGGAGGCCTTGAAACTTTTAGATCTCGAGAATATTCACAGTGTGTTCGACGATTTGATTCAGAGAGCTACCAAATGTTTGCCTTCTAAATCTCATGATAATGACCCGTCTTCTTCTTCTTCTTCAATTGAACCTAATGATTTGTCTTTGGCAAACCAAGTTTCCTTCTCCGGCAACAGCAACAGACGCCTTGAATCTCCGGCAACCACAACTGCAGCTGCTTCTTCGTCGAGTTTTTATAACTCAAAAGACTCTATTAAAGCGTCCGAACTGTATAGTAGAGACGACAGTTACTTGAATAAGGCAAAAGCCACGTTTCTTGTGGATGGAATTGGTGTTGGACTTCGATCTGGGGATGCTTCATCAGGGCCTAAGATTGTTGATTCCACCTTAAAGCCGTCGGCGATAAGTG............................................................................................................................................GTCAAGATGGTGAGAAATTAAGTTTGATTAAGCTTGCTAGTATGATTGAAGTGTCATCCAAAAAAGGAAGTAGAGAGCTTATGCTACGGAATAAGTTATCTGATCAAGTAGAATGGCTTCCAGATTCTATAGGGAAGCTATCGAGTTTGATCACTTTGGATCTGTCTGAGAATCGCATTACGGTCCTACCCACCACCATAGGGGGGCTTTTATCATTGCAAAAGCTAGATTTGCACTCAAACAAAATTGTTGAACTGCCTGATTGTATTGGAGATCTTCTTAACTTGGTGTATCTTGATCTCAGTGGAAATAACTTGAAGTTGTTGCCCGCGAGTTTTGCTAGGTTAGCTCACCTTCAAGAACTTGATTTGAGCTCTAACATGCTATCAGTACTCCCTGAGACAATTGGCTCCTTAGTAAGTCTTAAGAAATTGATTGTGGAAACTAATGACCTTGAGGAACTTCCTCACACTATTGGTCAATGTACTTCGCTCAAAGAGCTTCGTGTGGACTACAATCATCTTAAAGCACTTCCTGAAGCAGTGGGACGACTTGAGTCGTTGGAGATTCTGACTGCGCGGTACAATAACATCAGACTGTTGCCTACAACTATGTCATCCCTTACAAGTTTGAAAGAGCTGAATGTTAGTTTCAATGAAATCGAATCAGTGCCTGAGAGCTTGTGTTTTGCTACTTCACTGGTAAAGCTGAACATAAGCAACAATTTTGCAGACCTGAGATCACTACCAAGGTCCATTGGTAACCTTGAGTTGCTCGAAGAATTGGACATGAGTAACAACCAGATACGCGTTCTTCCAGATTCTTTTAGGATGCTCTCAAGTTTGCGGGTCCTTAAAACTGATGGAAATCCTTTGGAAGTTCCACCAGGAAGCGTCCTTGAGAAGGGAGCACAG...............................................................................GTTGTTGTACAATATATGTCTGATCTGGTTGCTAATAGAGATGTAAAGACGCAACCCGCAAAGAAGAAGAAGAAATCATGGACTCATATATGCTGTTTTTCAAGTTCCAACAAACGCCAGCGCAATGGCAGTATGGACTATGTTAATGCATGATGTGTTCCAGTTCCTCATAAATCTG................................................................................................................................................................................................GGAAATGAGCTGTGATTTGGCTGGACGAAAGCTGCAAAAATTTCAGTTGAATTCAAATATTTTTGCCAGCGAGATTCAATCAACTTTCTTGTTGTTCCAGATCACTGCCACGTGGTTTTTTTAAATTCTCATTTCATTGTGATAATTCTTTTAATGCTCTTTCCTGTATTTTCCTCGATTATGTAAAAATATGAAATGAGATGTAAAATCTTATCTTATTTTTTGACTTTCAATATATTCAATGGATTTCTGATTTGTTGAATAAATTGCAAAAGTCAGCCTGAATTAATTTGTCATTATCCAACCGACGGCGAATTTGTTTTGAATCCCGTCATATTTTAAATAAGAAAATATGTTGTTAATAGGTCAAATAAAGATGGCTTAGAGCCGTGGATCGTGGATCAATGAGATTGTTTTACTCTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564076" ref_strand="+" ref_description="SGN-U564076 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157344964|emb|CAO71692.1| (e_value=3e-34) unnamed; (*ATH) AT4G35470.1 (e_value=2e-33)  Symbol: None | leucine-rich repeat family protein, similar to Leucine-rich repeat protein SHOC-2 (Ras-binding protein Sur-8) (SP:Q9UQ13 ){Homo sapiens},PIR:T12704; contains Pfam PF00560: Leucine Rich Repeat domains | chr4:16846306-16849151 FORWARD |... ; ">
      <seq>agaaccgaacaagacacatttctgtcttagataactcatcctttctcttccctttcttcttcttcttcttcttctctctgttctccacatttcacgtatactttcagaattttttttggatttactttggacagaaaagctactaaatagtgaaaatacggcgaaaaataagctttactttgcatgctttcatgtgggtaaaggtttgaatttgctgtcatcgttgattggcgctttctagaaacttgtagaaacgaaaaaacttagctgcggttttcattttttcttgatctgctgattggtttggatggagcgaaattccttgctttgaataatacatacagaacaaggagaaagggcagtctgagtttaattttgtggccggagttgtatttatgtcgaattaatttatgtgggtgtttttttgttttcgataaattttcagagaattattgaaaatggggtcgttaggaatgtcgattgatgagattgtgcaagaaattatgagaattcatggatctctaccgacaagaccatcgattgatgaggttgaagcagcaagagctttaattggaaatctggagaaagaagatcagttgaaaatagaagctatcatgaggcaaaataaaaggaaaggtgttccagaagagctattcaaaattttgcaagagatgcagaggaacgctcttctttttcagagtaaagaacaaaagagggaggccttgaaacttttagatctcgagaatattcacagtgtgttcgacgatttgattcagagagctaccaaatgtttgccttctaaatctcatgataatgacccgtcttcttcttcttcttcaattgaacctaatgatttgtctttggcaaaccaagtttccttctccggcaacagcaacagacgccttgaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="+" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="137832" stop="139431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138132" g_stop="138282" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138283" i_stop="138370" i_length="88">
            <donor d_prob="0.342" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138371" g_stop="139131" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="912" r_length="761" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="+" ref_id="SGN-U564076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138132" e_stop="138282"/>
          <exon e_start="138371" e_stop="139131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCGAACAAGACACATTTCTGTCTTAGATAACTCATCCTTTCTCTTCCCTTTCTTCTTCTTCTTCTTCTTCTCTCTGTTCTCCACATTTCACGTATACTTTCAGAATTTTTTTTGGATTTACTTTGGACAGAAAAGCTACTAAATAGTGTGAGTCAATTTCTTTCCTTAAATAATTGTTTGGAGTTTTTTTTTTTTTTTCTCTTGTTGTTTTTGAAAACAGTTGTTCTCCATATAGGAAAATACGGCGAAAAATAAGCTTTACTTTGCATGCTTTCATGTGGGTAAAGGTTTGAATTTGCTGTCATCGTTGATTGGCGCTTTCTAGAAACTTGTAGAAACGAAAAAACTTAGCTGCGGTTTTCATTTTTTCTTGATCTGCTGATTGGTTTGGATGGAGCGAAATTCCTTGCTTTGAATAATACATACAGAACAAGGAGAAAGGGCAGTCTGAGTTTAATTTTGTGGCCGGAGTTGTATTTATGTCGAATTAATTTATGTGGGTGTTTTTTTGTTTTCGATAAATTTTCAGAGAATTATTGAAAATGGGGTCGTTAGGAATGTCGATTGATGAGATTGTGCAAGAAATTATGAGAATTCATGGATCTCTACCGACAAGACCATCGATTGATGAGGTTGAAGCAGCAAGAGCTTTAATTGGAAATCTGGAGAAAGAAGATCAGTTGAAAATAGAAGCTATCATGAGGCAAAATAAAAGGAAAGGTGTTCCAGAAGAGCTATTCAAAATTTTGCAAGAGATGCAGAGGAACGCTCTTCTTTTTCAGAGTAAAGAACAAAAGAGGGAGGCCTTGAAACTTTTAGATCTCGAGAATATTCACAGTGTGTTCGACGATTTGATTCAGAGAGCTACCAAATGTTTGCCTTCTAAATCTCATGATAATGACCCGTCTTCTTCTTCTTCTTCAATTGAACCTAATGATTTGTCTTTGGCAAACCAAGTTTCCTTCTCCGGCAACAGCAACAGACGCCTTGAATCTC</genome_strand>
        <mrna_strand>AGAACCGAACAAGACACATTTCTGTCTTAGATAACTCATCCTTTCTCTTCCCTTTCTTCTTCTTCTTCTTCTTCTCTCTGTTCTCCACATTTCACGTATACTTTCAGAATTTTTTTTGGATTTACTTTGGACAGAAAAGCTACTAAATAGT........................................................................................GAAAATACGGCGAAAAATAAGCTTTACTTTGCATGCTTTCATGTGGGTAAAGGTTTGAATTTGCTGTCATCGTTGATTGGCGCTTTCTAGAAACTTGTAGAAACGAAAAAACTTAGCTGCGGTTTTCATTTTTTCTTGATCTGCTGATTGGTTTGGATGGAGCGAAATTCCTTGCTTTGAATAATACATACAGAACAAGGAGAAAGGGCAGTCTGAGTTTAATTTTGTGGCCGGAGTTGTATTTATGTCGAATTAATTTATGTGGGTGTTTTTTTGTTTTCGATAAATTTTCAGAGAATTATTGAAAATGGGGTCGTTAGGAATGTCGATTGATGAGATTGTGCAAGAAATTATGAGAATTCATGGATCTCTACCGACAAGACCATCGATTGATGAGGTTGAAGCAGCAAGAGCTTTAATTGGAAATCTGGAGAAAGAAGATCAGTTGAAAATAGAAGCTATCATGAGGCAAAATAAAAGGAAAGGTGTTCCAGAAGAGCTATTCAAAATTTTGCAAGAGATGCAGAGGAACGCTCTTCTTTTTCAGAGTAAAGAACAAAAGAGGGAGGCCTTGAAACTTTTAGATCTCGAGAATATTCACAGTGTGTTCGACGATTTGATTCAGAGAGCTACCAAATGTTTGCCTTCTAAATCTCATGATAATGACCCGTCTTCTTCTTCTTCTTCAATTGAACCTAATGATTTGTCTTTGGCAAACCAAGTTTCCTTCTCCGGCAACAGCAACAGACGCCTTGAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578799" ref_strand="+" ref_description="SGN-U578799 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|195611652|gb|ACG27656.1| (e_value=1e-11) eukaryotic; (*ATH) AT3G55620.1 (e_value=1e-11)  Symbol: EMB1624 | eukaryotic translation initiation factor 6, putative / eIF-6, putative, similar to SP:O55135 Eukaryotic translation initiation factor 6 (eIF-6) (B4 integrin interactor) {Mus musculus}; contains Pfam profile PF01912: eIF-6 family | ... ; ">
      <seq>gctccgctatctctctcgctgtaagtgtttttccggcgattcctattggtgttttagaaaatttacatttgaggatgagttagcacctatccgaggctttcaagtgattcaaacaactattaatggaagctggtcggttggaagactgtgctggaaacaaaaatgggcttctcttgccttacaccactacacctcaagtgcaatgattgttgatcgtgcaaacatgtcattctattcatttgtattcaatacagcctttggaatacttatctataagtcgggcatggatatgaattggacttgctatgacaaaatttgtgggttagaagaaaacaatttcataagtggtcggtctgcaacattgctgtccttgattccatgcatcatttttgggactggaggcgaatgatatatctatataaactaacaaaatattgaaaatttgattttcgtttaggctaatgtttcactctaccatttcatgtttatttatgtgacttggtcaaattaccttacattcacctttttcctttgttatttccttgattttacatctgcctttgtgtctctttcggtgattgaagaacttcagcacttgacaaatagtctgcccaattctgttgaggtacaatgcatcgacgagacacattctgccttggggaactgcatagcatgcaatgatcatattgctcttatacatccttctcttgacaggacactgaagagatgattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="+" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="143968" stop="146741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144268" g_stop="144330" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144331" i_stop="145600" i_length="1270">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145601" g_stop="145690" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="153" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145691" i_stop="145790" i_length="100">
            <donor d_prob="0.233" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145791" g_stop="145835" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="198" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145836" i_stop="145916" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145917" g_stop="146433" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="715" r_length="517" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="+" ref_id="SGN-U578799" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144268" e_stop="144330"/>
          <exon e_start="145601" e_stop="145690"/>
          <exon e_start="145791" e_stop="145835"/>
          <exon e_start="145917" e_stop="146433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCGCTATCTCTCTCGCTGTAAGTGTTTTTCCGGCGATTCCTATTGGTGTTTTAGAAAATTGTAAGTTGAATTAAAGTACTCTGTTTTTTTTTTTACAACGCATTAACTATCTATGCCATAACTTCTTCGCTTCTGTACTTGTTTTACATAATTGTTTTTTTCATATTTGAGTCGAGCTTCTACGTATAACCCTATGCAACCCTTTTCACAGATGAATTTAGAATTTCTATAACATGGATGCCCTTCCAAAAAAGAATGGGAAAGATGTATTTACACGGAATTGATCTCTAGAGTGCATTATGTAGTCTTTGTTCAATGGTGCCAGCAGATAATAATATATACCAATTTGGAAAAATATATACGTAAAATATCTAGTTTTATGGAGAGACAATGGGTTCAATACCCCCAATCTTTTACTAAAAATTTGTCTGCATTTTGTGAGATTAAACGGGATATGTTGTTGTTGCTGAAGGTACTAACTCCAATTTTTCCTAGTTACTTGCGATGATACAAGTTGTGTTCCGTTGCTTATTTGCTTCTCATGTGATCTTAAGAGATGGCCAGTAGTAAGTCCGATAGAATAAAATATTTTGCACTTGTGTCCTAGTGTTAAATTTAGTATATACTGAATATGAAAGTTAATGGTATGTGTAAGTATTCGTGATGATTTCTTTTAACCAAGAAGACGAATTGTTAAAATTTTGGCAGAATCTTCAGCTCTGCCCTTTTCGGCTAGTAATGGCCTTAAGTGAGTTACATAATATTGTCTCATTCTGATATTCATTGTATTATTTTCTGTGTGTGAAGTTTTCTTTTTAAAAATGTAGGGCTGCAATTTGAGAATTCTTGTGATATTGGAGTTTATTCCAAGCTCACCAATGCATACTGCTTAGTTGGAATAGGGGGTTCTAAAAACTTCTATAGGTTCATCTTTCTTGTTTTTCAAACTAATAGTTATGGAAGCTGCAGTGATAAACTAAAATATTAGAGAAAGAAAATGAAGGCTGAACTTTTTTTCGATAACCATGGAGTTTGGGCTAGCTTTCGTCCACCTCGATAAAACTTTGTCCACTAAGGTTAGGATAGACGGGAAGAAATGACCTTGTGTTTTTTATCTTCTAGAATTTGGACGCGAGACCTTATGGTTCACAATCTACCCATTAGGCCACACTCTCGGCCTCGGGTGCAAATGAAGGTTGAACGTTTAATGTGGAACAATAAGAAAAGGAAACATGAAGTGAATATAAATACTTAAAGATGAATAATGAGTCTTTCTTGTTAACTTTCCCTGTTTATAGAAAAAGTTGTAATTTCTGTGATTTCTTTCCAGTACATTTGAGGATGAGTTAGCACCTATCCGAGGCTTTCAAGTGATTCAAACAACTATTAATGGAAGCTGGTCGGTTGGAAGACTGTGCTGGTATTCAACAATATTTTAGAACTACATTCTGTAACTCAAGGCCCTTTTTCCCTCTGATTTTGCTGTGAGAACTAAGTTTCCAACTTCCAATTTTCTGCAGGAAACAAAAATGGGCTTCTCTTGCCTTACACCACTACACCTCAAGGTAATAACATCATTTGTTCTATCTTAGGCATTTCAGTTTTAGTTTTTAGTTTTCTTTGAATATTCTTTTTCTTTTGTACAGTGCAATGATTGTTGATCGTGCAAACATGTCATTCTATTCATTTGTATTCAATACAGCCTTTGGAATACTTATCTATAAGTCGGGCATGGATATGAATTGGACTTGCTATGACAAAATTTGTGGGTTAGAAGAAAACAATTTCATAAGTGGTCGGTCTGCAACATTGCTGTCCTTGATTCCATGCATCATTTTTGGGACTGGAGGCGAATGATATATCTATATAAACTAACAAAATATTGAAAATTTGATTTTCGTTTAGGCTAATGTTTCACTCTACCATTTCATGTTTATTTATGTGACTTGGTCAAATTACCTTACATTCACCTTTTTCCTTTGTTATTTCCTTGATTTTACATCTGCCTTTGTGTCTCTTTCGGTGATTGAAGAACTTCAGCACTTGACAAATAGTCTGCCCAATTCTGTTGAGGTACAATGCATCGACGAGACACATTCTGCCTTGGGGAACTGCATAGCATGCAATGATCATATTGCTCTTATACATCCTTCTCTTGACAAG</genome_strand>
        <mrna_strand>GCTCCGCTATCTCTCTCGCTGTAAGTGTTTTTCCGGCGATTCCTATTGGTGTTTTAGAAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTTGAGGATGAGTTAGCACCTATCCGAGGCTTTCAAGTGATTCAAACAACTATTAATGGAAGCTGGTCGGTTGGAAGACTGTGCTG....................................................................................................GAAACAAAAATGGGCTTCTCTTGCCTTACACCACTACACCTCAAG.................................................................................TGCAATGATTGTTGATCGTGCAAACATGTCATTCTATTCATTTGTATTCAATACAGCCTTTGGAATACTTATCTATAAGTCGGGCATGGATATGAATTGGACTTGCTATGACAAAATTTGTGGGTTAGAAGAAAACAATTTCATAAGTGGTCGGTCTGCAACATTGCTGTCCTTGATTCCATGCATCATTTTTGGGACTGGAGGCGAATGATATATCTATATAAACTAACAAAATATTGAAAATTTGATTTTCGTTTAGGCTAATGTTTCACTCTACCATTTCATGTTTATTTATGTGACTTGGTCAAATTACCTTACATTCACCTTTTTCCTTTGTTATTTCCTTGATTTTACATCTGCCTTTGTGTCTCTTTCGGTGATTGAAGAACTTCAGCACTTGACAAATAGTCTGCCCAATTCTGTTGAGGTACAATGCATCGACGAGACACATTCTGCCTTGGGGAACTGCATAGCATGCAATGATCATATTGCTCTTATACATCCTTCTCTTGACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579852" ref_strand="+" ref_description="SGN-U579852 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ttttttccggcgactccaattggtgttttagaaaattttttagctcaccaatgcatactgcttagttggaataggggcttctcaaaacttctacaggttcatctttcttgtttttcaaactaatatttatggaagctgcagtgataaactaaaatattagagaaagaaaatgaaggctgaactttttttcgataaccatggagtttgggctagctttcatccacctcgacaaaactttgtccactaagtttaggatagacgggaagaaatgaacttgtgttttttgtctgctggaatttggacgcaagaccttatggttcacaatctacccactaggccacactctcggcctcgggtgcaaatgaaagctgaacgtttaatgtggaacaataagaaaaggaaagatgaagttaatataaatactaaaagatgaatactgagtctttcttgttaactttccctgttaatagaaaaagttgtaatttctgtgatttctttccggtacatttgaggatgagttagcacctattcgaggctttcaagtgattcaaacaactattaattgaagctggtcggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0008G02-PW6Cc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0008G02.1" temp_strand="+" temp_description="C02HBa0008G02.1  AC216703.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0008G02 sequenced_by:kribb upload_account_name:korea">
        <position start="143995" stop="145977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144294" g_stop="144330" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144331" i_stop="145135" i_length="805">
            <donor d_prob="0.867" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145136" g_stop="145677" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="579" r_length="542" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0008G02.1" gen_strand="+" ref_id="SGN-U579852" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0008G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144294" e_stop="144330"/>
          <exon e_start="145136" e_stop="145677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCCGGCGATTCCTATTGGTGTTTTAGAAAATTGTAAGTTGAATTAAAGTACTCTGTTTTTTTTTTTACAACGCATTAACTATCTATGCCATAACTTCTTCGCTTCTGTACTTGTTTTACATAATTGTTTTTTTCATATTTGAGTCGAGCTTCTACGTATAACCCTATGCAACCCTTTTCACAGATGAATTTAGAATTTCTATAACATGGATGCCCTTCCAAAAAAGAATGGGAAAGATGTATTTACACGGAATTGATCTCTAGAGTGCATTATGTAGTCTTTGTTCAATGGTGCCAGCAGATAATAATATATACCAATTTGGAAAAATATATACGTAAAATATCTAGTTTTATGGAGAGACAATGGGTTCAATACCCCCAATCTTTTACTAAAAATTTGTCTGCATTTTGTGAGATTAAACGGGATATGTTGTTGTTGCTGAAGGTACTAACTCCAATTTTTCCTAGTTACTTGCGATGATACAAGTTGTGTTCCGTTGCTTATTTGCTTCTCATGTGATCTTAAGAGATGGCCAGTAGTAAGTCCGATAGAATAAAATATTTTGCACTTGTGTCCTAGTGTTAAATTTAGTATATACTGAATATGAAAGTTAATGGTATGTGTAAGTATTCGTGATGATTTCTTTTAACCAAGAAGACGAATTGTTAAAATTTTGGCAGAATCTTCAGCTCTGCCCTTTTCGGCTAGTAATGGCCTTAAGTGAGTTACATAATATTGTCTCATTCTGATATTCATTGTATTATTTTCTGTGTGTGAAGTTTTCTTTTTAAAAATGTAGGGCTGCAATTTGAGAATTCTTGTGATATTGGAGTTTATTCCAAGCTCACCAATGCATACTGCTTAGTTGGAATAGGGGGTTCTAAAAACTTCTATAGGTTCATCTTTCTTGTTTTTCAAACTAATAGTTATGGAAGCTGCAGTGATAAACTAAAATATTAGAGAAAGAAAATGAAGGCTGAACTTTTTTTCGATAACCATGGAGTTTGGGCTAGCTTTCGTCCACCTCGATAAAACTTTGTCCACTAAGGTTAGGATAGACGGGAAGAAATGACCTTGTGTTTTTTATCTTCTAGAATTTGGACGCGAGACCTTATGGTTCACAATCTACCCATTAGGCCACACTCTCGGCCTCGGGTGCAAATGAAGGTTGAACGTTTAATGTGGAACAATAAGAAAAGGAAACATGAAGTGAATATAAATACTTAAAGATGAATAATGAGTCTTTCTTGTTAACTTTCCCTGTTTATAGAAAAAGTTGTAATTTCTGTGATTTCTTTCCAGTACATTTGAGGATGAGTTAGCACCTATCCGAGGCTTTCAAGTGATTCAAACAACTATTAATGGAAGCTGGTCGGTTG</genome_strand>
        <mrna_strand>TTTTTTCCGGCGACTCCAATTGGTGTTTTAGAAAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGCTCACCAATGCATACTGCTTAGTTGGAATAGGGGCTTCTCAAAACTTCTACAGGTTCATCTTTCTTGTTTTTCAAACTAATATTTATGGAAGCTGCAGTGATAAACTAAAATATTAGAGAAAGAAAATGAAGGCTGAACTTTTTTTCGATAACCATGGAGTTTGGGCTAGCTTTCATCCACCTCGACAAAACTTTGTCCACTAAGTTTAGGATAGACGGGAAGAAATGAACTTGTGTTTTTTGTCTGCTGGAATTTGGACGCAAGACCTTATGGTTCACAATCTACCCACTAGGCCACACTCTCGGCCTCGGGTGCAAATGAAAGCTGAACGTTTAATGTGGAACAATAAGAAAAGGAAAGATGAAGTTAATATAAATACTAAAAGATGAATACTGAGTCTTTCTTGTTAACTTTCCCTGTTAATAGAAAAAGTTGTAATTTCTGTGATTTCTTTCCGGTACATTTGAGGATGAGTTAGCACCTATTCGAGGCTTTCAAGTGATTCAAACAACTATTAATTGAAGCTGGTCGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>13</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="97258" PGL_stop="100406"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97258" e_stop="97332"/>
            <exon e_start="98260" e_stop="98372"/>
            <exon e_start="98870" e_stop="99033"/>
            <exon e_start="100337" e_stop="100406"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.960" e_score="0.973"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="97258" e_stop="97332" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.960">
            <gDNA_intron_boundary i_start="97333" i_stop="98259" i_length="927"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98260" e_stop="98372" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98373" i_stop="98869" i_length="497"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98870" e_stop="99033" e_length="164"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99034" i_stop="100336" i_length="1303"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="100337" e_stop="100406" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97258" stop="97332"/>
              <exon start="98260" stop="98372"/>
              <exon start="98870" stop="99033"/>
              <exon start="100337" stop="100406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGCTGAATTGGAGAAGTGGCTGGGTGAGAAATCAGACAAATACTTGGATGAACATGTTGATAAAGTTGAATTG : AAGCCAGGTAGTGGTGTATACAAACCTGACAACGAGTGGGTGCAGTGTGACAAATGTAGAAAGTGGAGAATGTTGAGCCATGGCTTCAACAGCAAGACTTTACCACTTCAGTG : GTTCTGTTACATGAAACCTTTTAACGGGGAATGCGAGAGATCAGAGCAGGAAGTTGAACCTGGAGTGATAACGATATCCAGCAAGCGTCTGGGATACAGTTCCACTGAAGATCCCGAAGAGATAAAGCGCAAGCTCTCCAGACAAGCTGTGGGGACATCAAAAA : ACGTGGGTGAGAATGATTCAAGTCATTCAATGGATGAGGATCAAGCAAAAAAATCACCTGCACAGAAACG</gDNA_template>
            <first_frame> Y  A  E  L  E  K  W  L  G  E  K  S  D  K  Y  L  D  E  H  V  D  K  V  E  L  :  K  P  G  S  G  V  Y  K  P  D  N  E  W  V  Q  C  D  K  C  R  K  W  R  M  L  S  H  G  F  N  S  K  T  L  P  L  Q  W :   F  C  Y  M  K  P  F  N  G  E  C  E  R  S  E  Q  E  V  E  P  G  V  I  T  I  S  S  K  R  L  G  Y  S  S  T  E  D  P  E  E  I  K  R  K  L  S  R  Q  A  V  G  T  S  K   : N  V  G  E  N  D  S  S  H  S  M  D  E  D  Q  A  K  K  S  P  A  Q  K   </first_frame>
            <second_frame>  M  L  N  W  R  S  G  W  V  R  N  Q  T  N  T  W  M  N  M  L  I  K  L  N  * :   S  Q  V  V  V  Y  T  N  L  T  T  S  G  C  S  V  T  N  V  E  S  G  E  C  *  A  M  A  S  T  A  R  L  Y  H  F  S   : G  S  V  T  *  N  L  L  T  G  N  A  R  D  Q  S  R  K  L  N  L  E  *  *  R  Y  P  A  S  V  W  D  T  V  P  L  K  I  P  K  R  *  S  A  S  S  P  D  K  L  W  G  H  Q  K  :  T  W  V  R  M  I  Q  V  I  Q  W  M  R  I  K  Q  K  N  H  L  H  R  N  </second_frame>
            <third_frame>   C  *  I  G  E  V  A  G  *  E  I  R  Q  I  L  G  *  T  C  *  *  S  *  I   : E  A  R  *  W  C  I  Q  T  *  Q  R  V  G  A  V  *  Q  M  *  K  V  E  N  V  E  P  W  L  Q  Q  Q  D  F  T  T  S  V  :  V  L  L  H  E  T  F  *  R  G  M  R  E  I  R  A  G  S  *  T  W  S  D  N  D  I  Q  Q  A  S  G  I  Q  F  H  *  R  S  R  R  D  K  A  Q  A  L  Q  T  S  C  G  D  I  K  K :   R  G  *  E  *  F  K  S  F  N  G  *  G  S  S  K  K  I  T  C  T  E  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97258" stop="97332"/>
                    <exon start="98260" stop="98372"/>
                    <exon start="98870" stop="99033"/>
                    <exon start="100337" stop="100404"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAELEKWLGEKSDKYLDEHVDKVELKPGSGVYKPDNEWVQCDKCRKWRMLSHGFNSKTLPLQWFCYMKPFNGECERSEQEVEPGVITISSKRLGYSSTEDPEEIKRKLSRQAVGTSKNVGENDSSHSMDEDQAKKSPAQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="101850" PGL_stop="103554"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101850" e_stop="102127"/>
            <exon e_start="102617" e_stop="102678"/>
            <exon e_start="102837" e_stop="102959"/>
            <exon e_start="103190" e_stop="103354"/>
            <exon e_start="103436" e_stop="103554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.349" acc_prob="0.983" e_score="0.967"/>
          <exon-intron don_prob="0.988" acc_prob="0.979" e_score="0.982"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101850" e_stop="102127" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.858">
            <gDNA_intron_boundary i_start="102128" i_stop="102616" i_length="489"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102617" e_stop="102678" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.964">
            <gDNA_intron_boundary i_start="102679" i_stop="102836" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="102837" e_stop="102959" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.349" acc_prob="0.983">
            <gDNA_intron_boundary i_start="102960" i_stop="103189" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="103190" e_stop="103354" e_length="165"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.979">
            <gDNA_intron_boundary i_start="103355" i_stop="103435" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.966">
            <gDNA_exon_boundary e_start="103436" e_stop="103554" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101850" stop="102127"/>
              <exon start="102617" stop="102678"/>
              <exon start="102837" stop="102959"/>
              <exon start="103190" stop="103354"/>
              <exon start="103436" stop="103554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572451" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCAGTTCAAAGCATCAATGGAAAACGTGGGATCAACCTCCGCCGCCGACGATAATACGCCGGCGCAACCAATCTCCTCCTCGACTCCTCTGGTCCCTTCATTTCCGGACCCTTCCGTCAGTACAACTGAATCGTGGAAACGCGGAAGACCAAACCCTGGGGTGACTACTCCTCCACCGTCTCAGGTCGCCGGCGGTGGACTTTCGTCTTCTGCGCAGCTGCAGGCAGATGAAACGGCGGTTTCTACTGGGAATAAGCAGCAAAGCGTTGATTTGG : GATCAGAAGTAGCCGCTCTTGGATTTATGCAATCACACGTGATCAACATAAAAACTGGGGAG : GATATATTGGTCAAAATAATGTCATTCTGCGAAAGTACCTCTAAATCAGTGTGTGTTCTGTCAGCCAATGGTTCCACATCTAGTGTATCACTTCGCCGACCATATCAATCTGTAACATATAAG : GGAGTGTACGACATCCTTAGTCTGACTGGTTTCTTCTTTGTCTTGGAATCTGGTGGTCGACACAGCAGAGAAGGTGGCTTGACTGCGATACTTGGTAATGAAGAAGATGGTGATGTTTGGGGAGGCAATGTGGATGGGCTCTTTACAGCAGCAACTGATGTTCAG : GTTATTGTTAGTAGCTTCAGCACAGGAAAACAGGTGCAGTCAGACAACTTTGGTACACCAGCAAAATTAAGTCCTATGTCAGTTGGAAGTTTAAGTGGGTCTGTGAGCCCTGATAGTCC</gDNA_template>
            <first_frame> K  S  V  Q  S  I  N  G  K  R  G  I  N  L  R  R  R  R  *  Y  A  G  A  T  N  L  L  L  D  S  S  G  P  F  I  S  G  P  F  R  Q  Y  N  *  I  V  E  T  R  K  T  K  P  W  G  D  Y  S  S  T  V  S  G  R  R  R  W  T  F  V  F  C  A  A  A  G  R  *  N  G  G  F  Y  W  E  *  A  A  K  R  *  F  G :   I  R  S  S  R  S  W  I  Y  A  I  T  R  D  Q  H  K  N  W  G   : G  Y  I  G  Q  N  N  V  I  L  R  K  Y  L  *  I  S  V  C  S  V  S  Q  W  F  H  I  *  C  I  T  S  P  T  I  S  I  C  N  I  *   : G  S  V  R  H  P  *  S  D  W  F  L  L  C  L  G  I  W  W  S  T  Q  Q  R  R  W  L  D  C  D  T  W  *  *  R  R  W  *  C  L  G  R  Q  C  G  W  A  L  Y  S  S  N  *  C  S   : G  Y  C  *  *  L  Q  H  R  K  T  G  A  V  R  Q  L  W  Y  T  S  K  I  K  S  Y  V  S  W  K  F  K  W  V  C  E  P  *  *  S </first_frame>
            <second_frame>  N  Q  F  K  A  S  M  E  N  V  G  S  T  S  A  A  D  D  N  T  P  A  Q  P  I  S  S  S  T  P  L  V  P  S  F  P  D  P  S  V  S  T  T  E  S  W  K  R  G  R  P  N  P  G  V  T  T  P  P  P  S  Q  V  A  G  G  G  L  S  S  S  A  Q  L  Q  A  D  E  T  A  V  S  T  G  N  K  Q  Q  S  V  D  L   : G  S  E  V  A  A  L  G  F  M  Q  S  H  V  I  N  I  K  T  G  E  :  D  I  L  V  K  I  M  S  F  C  E  S  T  S  K  S  V  C  V  L  S  A  N  G  S  T  S  S  V  S  L  R  R  P  Y  Q  S  V  T  Y  K  :  G  V  Y  D  I  L  S  L  T  G  F  F  F  V  L  E  S  G  G  R  H  S  R  E  G  G  L  T  A  I  L  G  N  E  E  D  G  D  V  W  G  G  N  V  D  G  L  F  T  A  A  T  D  V  Q  :  V  I  V  S  S  F  S  T  G  K  Q  V  Q  S  D  N  F  G  T  P  A  K  L  S  P  M  S  V  G  S  L  S  G  S  V  S  P  D  S   </second_frame>
            <third_frame>   I  S  S  K  H  Q  W  K  T  W  D  Q  P  P  P  P  T  I  I  R  R  R  N  Q  S  P  P  R  L  L  W  S  L  H  F  R  T  L  P  S  V  Q  L  N  R  G  N  A  E  D  Q  T  L  G  *  L  L  L  H  R  L  R  S  P  A  V  D  F  R  L  L  R  S  C  R  Q  M  K  R  R  F  L  L  G  I  S  S  K  A  L  I  W  :  D  Q  K  *  P  L  L  D  L  C  N  H  T  *  S  T  *  K  L  G  R :   I  Y  W  S  K  *  C  H  S  A  K  V  P  L  N  Q  C  V  F  C  Q  P  M  V  P  H  L  V  Y  H  F  A  D  H  I  N  L  *  H  I  R :   E  C  T  T  S  L  V  *  L  V  S  S  L  S  W  N  L  V  V  D  T  A  E  K  V  A  *  L  R  Y  L  V  M  K  K  M  V  M  F  G  E  A  M  W  M  G  S  L  Q  Q  Q  L  M  F  R :   L  L  L  V  A  S  A  Q  E  N  R  C  S  Q  T  T  L  V  H  Q  Q  N  *  V  L  C  Q  L  E  V  *  V  G  L  *  A  L  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101851" stop="102127"/>
                    <exon start="102617" stop="102678"/>
                    <exon start="102837" stop="102959"/>
                    <exon start="103190" stop="103354"/>
                    <exon start="103436" stop="103552"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQFKASMENVGSTSAADDNTPAQPISSSTPLVPSFPDPSVSTTESWKRGRPNPGVTTPPPSQVAGGGLSSSAQLQADETAVSTGNKQQSVDLGSEVAALGFMQSHVINIKTGEDILVKIMSFCESTSKSVCVLSANGSTSSVSLRRPYQSVTYKGVYDILSLTGFFFVLESGGRHSREGGLTAILGNEEDGDVWGGNVDGLFTAATDVQVIVSSFSTGKQVQSDNFGTPAKLSPMSVGSLSGSVSPDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="104860" PGL_stop="106255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104860" e_stop="105279"/>
            <exon e_start="105706" e_stop="105767"/>
            <exon e_start="105897" e_stop="106163"/>
            <exon e_start="106237" e_stop="106255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="0.993"/>
          <exon-intron don_prob="0.944" acc_prob="0.991" e_score="0.984"/>
          <exon-intron don_prob="0.996" acc_prob="0.945" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="104860" e_stop="105279" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="105280" i_stop="105705" i_length="426"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="105706" e_stop="105767" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.991">
            <gDNA_intron_boundary i_start="105768" i_stop="105896" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="105897" e_stop="106163" e_length="267"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.945">
            <gDNA_intron_boundary i_start="106164" i_stop="106236" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106237" e_stop="106255" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104860" stop="105279"/>
              <exon start="105706" stop="105767"/>
              <exon start="105897" stop="106163"/>
              <exon start="106237" stop="106255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGGAGTAGTAACAGTACGTGAAAATAGAGCGAAAATCAATGGAAAACGTGGGATCGCCCTCCGCCTCCGACGATGGTACGCCGGTGCAACCCATCTCCTCCTCGACTCCTCCGGTGCCGTCATTTCCAGCTCTCCTAGGCACCACCGTTAGTGGACTTTCGTCTTCTACGGCTGATGTAGAGACTACTCCTCAGGTCGCCGGCTGTGGACTTTCGTCTTCTATGGCAGAGGTACAGAGTACTCCTTCAACGTCTCAGTTCGCCGGCAGTGGACTTCCGTCTAGTCTTTCAATGTCCGGCGGTGGACTTTCGTCTTCTACGGTAGATGGAGAAAGTGCTCCTTCAACGTCTCAGGTCGCTGGCAGTGGACTTTCATCTTCTACGCAGCCGCAGGCAGATGAAGCGGCAGTTTCTAGTG : TATCAAACCCAGAAGAATTTGGACCTATGCAATCGCACGTGATCAAGGCAGAAGCTGGGGAG : GAAAAGGATCTTAAACTGGAGAGTGAAATCAATTATCTAGTATTGAAGAGGAAGTTGGTGAAGTTCACAATCAAACAGATCAATTCATTCATTTCTGCCAGAAGTGTGGTAGGAATAGGTAGCTGGGGAACGGTGTATGAAGGAATGATTGAAGGATTATCTGGACTATCTAGTGATTTGAATGGGGAAAGAATTGCTGTCAAAGTAGGAAATTATTTCTGCAAAGAAGAAGAGTTTTGTAATGATGAGAATTATATTCAATGGAAG : ACTGAGATTATGATACTAT</gDNA_template>
            <first_frame> *  W  S  S  N  S  T  *  K  *  S  E  N  Q  W  K  T  W  D  R  P  P  P  P  T  M  V  R  R  C  N  P  S  P  P  R  L  L  R  C  R  H  F  Q  L  S  *  A  P  P  L  V  D  F  R  L  L  R  L  M  *  R  L  L  L  R  S  P  A  V  D  F  R  L  L  W  Q  R  Y  R  V  L  L  Q  R  L  S  S  P  A  V  D  F  R  L  V  F  Q  C  P  A  V  D  F  R  L  L  R  *  M  E  K  V  L  L  Q  R  L  R  S  L  A  V  D  F  H  L  L  R  S  R  R  Q  M  K  R  Q  F  L  V  :  Y  Q  T  Q  K  N  L  D  L  C  N  R  T  *  S  R  Q  K  L  G  R :   K  R  I  L  N  W  R  V  K  S  I  I  *  Y  *  R  G  S  W  *  S  S  Q  S  N  R  S  I  H  S  F  L  P  E  V  W  *  E  *  V  A  G  E  R  C  M  K  E  *  L  K  D  Y  L  D  Y  L  V  I  *  M  G  K  E  L  L  S  K  *  E  I  I  S  A  K  K  K  S  F  V  M  M  R  I  I  F  N  G  R :   L  R  L  *  Y  Y </first_frame>
            <second_frame>  D  G  V  V  T  V  R  E  N  R  A  K  I  N  G  K  R  G  I  A  L  R  L  R  R  W  Y  A  G  A  T  H  L  L  L  D  S  S  G  A  V  I  S  S  S  P  R  H  H  R  *  W  T  F  V  F  Y  G  *  C  R  D  Y  S  S  G  R  R  L  W  T  F  V  F  Y  G  R  G  T  E  Y  S  F  N  V  S  V  R  R  Q  W  T  S  V  *  S  F  N  V  R  R  W  T  F  V  F  Y  G  R  W  R  K  C  S  F  N  V  S  G  R  W  Q  W  T  F  I  F  Y  A  A  A  G  R  *  S  G  S  F  *  C :   I  K  P  R  R  I  W  T  Y  A  I  A  R  D  Q  G  R  S  W  G   : G  K  G  S  *  T  G  E  *  N  Q  L  S  S  I  E  E  E  V  G  E  V  H  N  Q  T  D  Q  F  I  H  F  C  Q  K  C  G  R  N  R  *  L  G  N  G  V  *  R  N  D  *  R  I  I  W  T  I  *  *  F  E  W  G  K  N  C  C  Q  S  R  K  L  F  L  Q  R  R  R  V  L  *  *  *  E  L  Y  S  M  E   : D  *  D  Y  D  T   </second_frame>
            <third_frame>   M  E  *  *  Q  Y  V  K  I  E  R  K  S  M  E  N  V  G  S  P  S  A  S  D  D  G  T  P  V  Q  P  I  S  S  S  T  P  P  V  P  S  F  P  A  L  L  G  T  T  V  S  G  L  S  S  S  T  A  D  V  E  T  T  P  Q  V  A  G  C  G  L  S  S  S  M  A  E  V  Q  S  T  P  S  T  S  Q  F  A  G  S  G  L  P  S  S  L  S  M  S  G  G  G  L  S  S  S  T  V  D  G  E  S  A  P  S  T  S  Q  V  A  G  S  G  L  S  S  S  T  Q  P  Q  A  D  E  A  A  V  S  S   : V  S  N  P  E  E  F  G  P  M  Q  S  H  V  I  K  A  E  A  G  E  :  E  K  D  L  K  L  E  S  E  I  N  Y  L  V  L  K  R  K  L  V  K  F  T  I  K  Q  I  N  S  F  I  S  A  R  S  V  V  G  I  G  S  W  G  T  V  Y  E  G  M  I  E  G  L  S  G  L  S  S  D  L  N  G  E  R  I  A  V  K  V  G  N  Y  F  C  K  E  E  E  F  C  N  D  E  N  Y  I  Q  W  K  :  T  E  I  M  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104874" stop="105279"/>
                    <exon start="105706" stop="105767"/>
                    <exon start="105897" stop="106163"/>
                    <exon start="106237" stop="106254"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYVKIERKSMENVGSPSASDDGTPVQPISSSTPPVPSFPALLGTTVSGLSSSTADVETTPQVAGCGLSSSMAEVQSTPSTSQFAGSGLPSSLSMSGGGLSSSTVDGESAPSTSQVAGSGLSSSTQPQADEAAVSSVSNPEEFGPMQSHVIKAEAGEEKDLKLESEINYLVLKRKLVKFTIKQINSFISARSVVGIGSWGTVYEGMIEGLSGLSSDLNGERIAVKVGNYFCKEEEFCNDENYIQWKTEIMIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="111497" PGL_stop="111262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111497" e_stop="111262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="111497" e_stop="111262" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111497" stop="111262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTGAACATC</gDNA_template>
            <first_frame> W  G  K  T  *  S  S  Y  E  M  L  G  G  L  I  E  G  V  I  L  G  *  T  N  L  *  K  K  N  I  M  C  N  *  N  I  M  N  E  P  *  N  F  P  K  N  *  C  *  T  *  *  K  S  E  E  K  S  *  N  K  F  P  E  L  E  N  R  L  *  K  N  L  E  I  F  *  T   </first_frame>
            <second_frame>  G  V  R  R  E  V  H  M  K  C  *  V  A  *  L  R  E  *  F  L  V  R  R  I  Y  K  K  K  I  *  C  V  I  K  T  L  *  M  N  H  E  I  S  L  R  I  N  V  K  L  D  E  K  V  K  K  N  R  R  I  N  F  Q  N  L  K  T  D  F  K  R  I  W  K  F  F  E  H  </second_frame>
            <third_frame>   G  *  D  V  K  F  I  *  N  V  R  W  L  D  *  G  S  N  S  W  L  D  E  S  I  K  K  K  Y  N  V  *  L  K  H  Y  E  *  T  M  K  F  P  *  E  L  M  L  N  L  M  K  K  *  R  K  I  V  E  *  I  S  R  T  *  K  Q  T  L  K  E  S  G  N  F  L  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0008G02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="120174" PGL_stop="119939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120174" e_stop="119939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="120174" e_stop="119939" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120174" stop="119939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTGAACATC</gDNA_template>
            <first_frame> W  G  K  T  *  S  S  Y  E  M  L  G  G  L  I  E  G  V  I  L  G  *  T  N  L  *  K  K  N  I  M  C  N  *  N  I  M  N  E  P  *  N  F  P  K  N  *  C  *  T  *  *  K  S  E  E  K  S  *  N  K  F  P  E  L  E  N  R  L  *  K  N  L  E  I  F  *  T   </first_frame>
            <second_frame>  G  V  R  R  E  V  H  M  K  C  *  V  A  *  L  R  E  *  F  L  V  R  R  I  Y  K  K  K  I  *  C  V  I  K  T  L  *  M  N  H  E  I  S  L  R  I  N  V  K  L  D  E  K  V  K  K  N  R  R  I  N  F  Q  N  L  K  T  D  F  K  R  I  W  K  F  F  E  H  </second_frame>
            <third_frame>   G  *  D  V  K  F  I  *  N  V  R  W  L  D  *  G  S  N  S  W  L  D  E  S  I  K  K  K  Y  N  V  *  L  K  H  Y  E  *  T  M  K  F  P  *  E  L  M  L  N  L  M  K  K  *  R  K  I  V  E  *  I  S  R  T  *  K  Q  T  L  K  E  S  G  N  F  L  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0008G02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="121878" PGL_stop="123691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121878" e_stop="122632"/>
            <exon e_start="123073" e_stop="123202"/>
            <exon e_start="123362" e_stop="123691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121878" e_stop="122632" e_length="755"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.871">
            <gDNA_intron_boundary i_start="122633" i_stop="123072" i_length="440"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123073" e_stop="123202" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="123203" i_stop="123361" i_length="159"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="123362" e_stop="123691" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121878" stop="122601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122379" stop="122632"/>
              <exon start="123073" stop="123202"/>
              <exon start="123362" stop="123691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595517" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGCCCTCCATCCATTATACATCCTGATGACGAAGAAGAAGAATAGCTTCTATGTTCAATTTTTTTAATACAAACAACTCTTCTTATTTCCTTATTTCATAATCTTTATCTAGTTCAATCGCTTATTTAAACATGGTGAACTTCCTTAGAAAAAATCAATAACCTCAATTTTCTCTTTTGATTTTAATCTCAAAATAAGAATCAAACTCCATAATCACTAAAAGAAATTGTATATGCGATTTTACGTACACCGTTATTAATTAGAGTTAGACAGATGATCAAAGGAATTAAGATTTCTTGGTCATTTATAAAATGAAACGCGGAAGGCCGGAGAAGCATGCTATGGAGAGTTCCGCGAGCACTGATCAGACTTTCGTCTCCTATGCAGCCGCAGGAAGATGTAGCGAGACCTGGAATGACTACTGCTCCGCCGTCTCAGGTCGCCGGCGGTGGACTTTCGTCTCCTACGCAGCTGCAGGCAGATGTAGCGACAGCCCTGGGATGACTACTCTTTCACCGTCTCAGGTCGGCGGCGGTGGACTTTCGTCTCCTACGCAGCTGCAGGCAGATGTAGCACCGTCTCAGGTCGGCGGCGGTGTAGTTTGGTCTCAGAGCAGGCAGATTTAGCGAGCCCTGGGATGACTACTCCTTCACCGTCTACGGCAGGTGAAGCGGCGATTTCTGCTGTGCCTGCGAAAAGGGGTAGAGGAAGACCGCCTGGTTCTAAAACCAAGAAGATAAGTGTTTGGTTCAG : ATATTGGACCTATGCAATCAATCGCAGGCGAGCAAGGTAGAAGCTGGGGAGGTGTGCCTCTCTTTTGATAAGCATGTATTGTTAGCTGCTTCTCAGGATGTATTGGCCAAAATAGTGTCATTCTGCAAAG : GTACTGTTCCCGATCATTTATCTGTCTGGTTTCTTCTTTGTCTTGGAATCTGGTGCTACTTGATGGTGAAGCAGATGGTTATATCAATGTGGCAGGGCTCCTTACAGCAGCAACTGATGTTCAGGTTATTGTTGGTAGCTTCAACACACACAAGATTTTAACACTCAAAAGTGCTATGTCAGTCGGAACTTTAAGTCCGCCTGATTAAACTAAGAAGAAGAGAGATGCCCTGGAGACGAAAGAATGCTTCTCTTGTTATTGATAATACCTATGTGATGTGAGAATGTAGTCTGCAGCTTTGCAATTCTTTTTTATATGGATTGAGCAACA</gDNA_template>
            <first_frame> I  A  L  H  P  L  Y  I  L  M  T  K  K  K  N  S  F  Y  V  Q  F  F  *  Y  K  Q  L  F  L  F  P  Y  F  I  I  F  I  *  F  N  R  L  F  K  H  G  E  L  P  *  K  K  S  I  T  S  I  F  S  F  D  F  N  L  K  I  R  I  K  L  H  N  H  *  K  K  L  Y  M  R  F  Y  V  H  R  Y  *  L  E  L  D  R  *  S  K  E  L  R  F  L  G  H  L  *  N  E  T  R  K  A  G  E  A  C  Y  G  E  F  R  E  H  *  S  D  F  R  L  L  C  S  R  R  K  M  *  R  D  L  E  *  L  L  L  R  R  L  R  S  P  A  V  D  F  R  L  L  R  S  C  R  Q  M  *  R  Q  P  W  D  D  Y  S  F  T  V  S  G  R  R  R  W  T  F  V  S  Y  A  A  A  G  R  C  S  T  V  S  G  R  R  R  C  S  L  V  S  E  Q  A  D  L  A  S  P  G  M  T  T  P  S  P  S  T  A  G  E  A  A  I  S  A  V  P  A  K  R  G  R  G  R  P  P  G  S  K  T  K  K  I  S  V  W  F  R :   Y  W  T  Y  A  I  N  R  R  R  A  R  *  K  L  G  R  C  A  S  L  L  I  S  M  Y  C  *  L  L  L  R  M  Y  W  P  K  *  C  H  S  A  K  :  V  L  F  P  I  I  Y  L  S  G  F  F  F  V  L  E  S  G  A  T  *  W  *  S  R  W  L  Y  Q  C  G  R  A  P  Y  S  S  N  *  C  S  G  Y  C  W  *  L  Q  H  T  Q  D  F  N  T  Q  K  C  Y  V  S  R  N  F  K  S  A  *  L  N  *  E  E  E  R  C  P  G  D  E  R  M  L  L  L  L  L  I  I  P  M  *  C  E  N  V  V  C  S  F  A  I  L  F  Y  M  D  *  A  T </first_frame>
            <second_frame>  L  P  S  I  H  Y  T  S  *  *  R  R  R  R  I  A  S  M  F  N  F  F  N  T  N  N  S  S  Y  F  L  I  S  *  S  L  S  S  S  I  A  Y  L  N  M  V  N  F  L  R  K  N  Q  *  P  Q  F  S  L  L  I  L  I  S  K  *  E  S  N  S  I  I  T  K  R  N  C  I  C  D  F  T  Y  T  V  I  N  *  S  *  T  D  D  Q  R  N  *  D  F  L  V  I  Y  K  M  K  R  G  R  P  E  K  H  A  M  E  S  S  A  S  T  D  Q  T  F  V  S  Y  A  A  A  G  R  C  S  E  T  W  N  D  Y  C  S  A  V  S  G  R  R  R  W  T  F  V  S  Y  A  A  A  G  R  C  S  D  S  P  G  M  T  T  L  S  P  S  Q  V  G  G  G  G  L  S  S  P  T  Q  L  Q  A  D  V  A  P  S  Q  V  G  G  G  V  V  W  S  Q  S  R  Q  I  *  R  A  L  G  *  L  L  L  H  R  L  R  Q  V  K  R  R  F  L  L  C  L  R  K  G  V  E  E  D  R  L  V  L  K  P  R  R  *  V  F  G  S   : D  I  G  P  M  Q  S  I  A  G  E  Q  G  R  S  W  G  G  V  P  L  F  *  *  A  C  I  V  S  C  F  S  G  C  I  G  Q  N  S  V  I  L  Q  R :   Y  C  S  R  S  F  I  C  L  V  S  S  L  S  W  N  L  V  L  L  D  G  E  A  D  G  Y  I  N  V  A  G  L  L  T  A  A  T  D  V  Q  V  I  V  G  S  F  N  T  H  K  I  L  T  L  K  S  A  M  S  V  G  T  L  S  P  P  D  *  T  K  K  K  R  D  A  L  E  T  K  E  C  F  S  C  Y  *  *  Y  L  C  D  V  R  M  *  S  A  A  L  Q  F  F  F  I  W  I  E  Q   </second_frame>
            <third_frame>   C  P  P  S  I  I  H  P  D  D  E  E  E  E  *  L  L  C  S  I  F  L  I  Q  T  T  L  L  I  S  L  F  H  N  L  Y  L  V  Q  S  L  I  *  T  W  *  T  S  L  E  K  I  N  N  L  N  F  L  F  *  F  *  S  Q  N  K  N  Q  T  P  *  S  L  K  E  I  V  Y  A  I  L  R  T  P  L  L  I  R  V  R  Q  M  I  K  G  I  K  I  S  W  S  F  I  K  *  N  A  E  G  R  R  S  M  L  W  R  V  P  R  A  L  I  R  L  S  S  P  M  Q  P  Q  E  D  V  A  R  P  G  M  T  T  A  P  P  S  Q  V  A  G  G  G  L  S  S  P  T  Q  L  Q  A  D  V  A  T  A  L  G  *  L  L  F  H  R  L  R  S  A  A  V  D  F  R  L  L  R  S  C  R  Q  M  *  H  R  L  R  S  A  A  V  *  F  G  L  R  A  G  R  F  S  E  P  W  D  D  Y  S  F  T  V  Y  G  R  *  S  G  D  F  C  C  A  C  E  K  G  *  R  K  T  A  W  F  *  N  Q  E  D  K  C  L  V  Q  :  I  L  D  L  C  N  Q  S  Q  A  S  K  V  E  A  G  E  V  C  L  S  F  D  K  H  V  L  L  A  A  S  Q  D  V  L  A  K  I  V  S  F  C  K   : G  T  V  P  D  H  L  S  V  W  F  L  L  C  L  G  I  W  C  Y  L  M  V  K  Q  M  V  I  S  M  W  Q  G  S  L  Q  Q  Q  L  M  F  R  L  L  L  V  A  S  T  H  T  R  F  *  H  S  K  V  L  C  Q  S  E  L  *  V  R  L  I  K  L  R  R  R  E  M  P  W  R  R  K  N  A  S  L  V  I  D  N  T  Y  V  M  *  E  C  S  L  Q  L  C  N  S  F  L  Y  G  L  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122170" stop="122505"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFLVIYKMKRGRPEKHAMESSASTDQTFVSYAAAGRCSETWNDYCSAVSGRRRWTFVSYAAAGRCSDSPGMTTLSPSQVGGGGLSSPTQLQADVAPSQVGGGVVWSQSRQI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122606" stop="122632"/>
                    <exon start="123073" stop="123202"/>
                    <exon start="123362" stop="123522"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQEDKCLVQILDLCNQSQASKVEAGEVCLSFDKHVLLAASQDVLAKIVSFCKGTVPDHLSVWFLLCLGIWCYLMVKQMVISMWQGSLQQQLMFRLLLVASTHTRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122367" stop="122632"/>
                    <exon start="123073" stop="123112"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQPWDDYSFTVSGRRRWTFVSYAAAGRCSTVSGRRRCSLVSEQADLASPGMTTPSPSTAGEAAISAVPAKRGRGRPPGSKTKKISVWFRYWTYAINRRRAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123144" stop="123202"/>
                    <exon start="123362" stop="123569"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACIVSCFSGCIGQNSVILQRYCSRSFICLVSSLSWNLVLLDGEADGYINVAGLLTAATDVQVIVGSFNTHKILTLKSAMSVGTLSPPD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="131598" PGL_stop="124005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131598" e_stop="131520"/>
            <exon e_start="131012" e_stop="130864"/>
            <exon e_start="130273" e_stop="130193"/>
            <exon e_start="130080" e_stop="130009"/>
            <exon e_start="129904" e_stop="129833"/>
            <exon e_start="129754" e_stop="129518"/>
            <exon e_start="129296" e_stop="129186"/>
            <exon e_start="129088" e_stop="128975"/>
            <exon e_start="127833" e_stop="127711"/>
            <exon e_start="127630" e_stop="127562"/>
            <exon e_start="127409" e_stop="127306"/>
            <exon e_start="126512" e_stop="126429"/>
            <exon e_start="126293" e_stop="126206"/>
            <exon e_start="125723" e_stop="125607"/>
            <exon e_start="124981" e_stop="124800"/>
            <exon e_start="124643" e_stop="124005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.582" e_score="1.000"/>
          <exon-intron don_prob="0.755" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.471" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.458" e_score="1.000"/>
          <exon-intron don_prob="0.861" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.152" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.677" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131598" e_stop="131520" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.582">
            <gDNA_intron_boundary i_start="131519" i_stop="131013" i_length="507"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131012" e_stop="130864" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.755" acc_prob="0.994">
            <gDNA_intron_boundary i_start="130863" i_stop="130274" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="130273" e_stop="130193" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.969">
            <gDNA_intron_boundary i_start="130192" i_stop="130081" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="130080" e_stop="130009" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.955">
            <gDNA_intron_boundary i_start="130008" i_stop="129905" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="129904" e_stop="129833" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.879" acc_prob="0.990">
            <gDNA_intron_boundary i_start="129832" i_stop="129755" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="129754" e_stop="129518" e_length="237"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.471">
            <gDNA_intron_boundary i_start="129517" i_stop="129297" i_length="221"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="129296" e_stop="129186" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.909" acc_prob="0.998">
            <gDNA_intron_boundary i_start="129185" i_stop="129089" i_length="97"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="129088" e_stop="128975" e_length="114"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.458">
            <gDNA_intron_boundary i_start="128974" i_stop="127834" i_length="1141"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="127833" e_stop="127711" e_length="123"/>
          </exon>
          <intron i_serial="9" don_prob="0.861" acc_prob="0.945">
            <gDNA_intron_boundary i_start="127710" i_stop="127631" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="127630" e_stop="127562" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.981" acc_prob="0.983">
            <gDNA_intron_boundary i_start="127561" i_stop="127410" i_length="152"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="127409" e_stop="127306" e_length="104"/>
          </exon>
          <intron i_serial="11" don_prob="0.864" acc_prob="0.967">
            <gDNA_intron_boundary i_start="127305" i_stop="126513" i_length="793"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="126512" e_stop="126429" e_length="84"/>
          </exon>
          <intron i_serial="12" don_prob="0.951" acc_prob="0.152">
            <gDNA_intron_boundary i_start="126428" i_stop="126294" i_length="135"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="126293" e_stop="126206" e_length="88"/>
          </exon>
          <intron i_serial="13" don_prob="0.722" acc_prob="0.991">
            <gDNA_intron_boundary i_start="126205" i_stop="125724" i_length="482"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="125723" e_stop="125607" e_length="117"/>
          </exon>
          <intron i_serial="14" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="125606" i_stop="124982" i_length="625"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="124981" e_stop="124800" e_length="182"/>
          </exon>
          <intron i_serial="15" don_prob="0.987" acc_prob="0.677">
            <gDNA_intron_boundary i_start="124799" i_stop="124644" i_length="156"/>
          </intron>
          <exon e_serial="16" e_score="0.998">
            <gDNA_exon_boundary e_start="124643" e_stop="124005" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131598" stop="131520"/>
              <exon start="131012" stop="130864"/>
              <exon start="130273" stop="130193"/>
              <exon start="130080" stop="130009"/>
              <exon start="129904" stop="129833"/>
              <exon start="129754" stop="129518"/>
              <exon start="129296" stop="129186"/>
              <exon start="129088" stop="128975"/>
              <exon start="127833" stop="127711"/>
              <exon start="127630" stop="127562"/>
              <exon start="127409" stop="127306"/>
              <exon start="126512" stop="126429"/>
              <exon start="126293" stop="126206"/>
              <exon start="125723" stop="125607"/>
              <exon start="124981" stop="124800"/>
              <exon start="124643" stop="124005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCACTGCCTGGCGCCGCTTTGGCTCATCTCCAGCTCTACCGGCAACTCACTTTCTCCTTCCCCGACGAAATCAAAGT : AAAATTTGCGCAATATTTCAACCCTAGTCAACATAATGGGAATGGAATTACATGCTGAAAGTGCGGGTTGTGCTGAGATGGAGATTGCTGAGATTACGGATTCAGATTTGTTCAAACTTGTTAGACATGCCCTTAAATCTGTTATCCAG : GGTGATCCAGACCAATATGAGCAGCTTCTTCGTGTTATGCACCCTGATGAAGGCGTTTTACCTGATGTGGCCCTACTGGTG : ACATGTTTAAAAGCTCTGTCAGGATCAGTTTCTTGTCTAGACATTGTTCACCATAAATCTCTTATTGCATCT : ATTTTACAAATGAGCATGTGGAACTATGGAACTGATGTAATGGATGCTTTGATGGAATTTAATATATCCTTG : GCTACATCCAGTGGGCAGTATGTAGATCTGTGCTTGGAAATGCTTGTGAGCAATTTTATGCCTCCTGATTCCTTCATATCATTGTTGAATCAGCCACGTGGCATTCTACGGAAGGGCCAAGTCATTGACCGTGTCCATTCAACATTAACATACATTGCAAAGTTAGTTCCTCTCTCGCCCTTGAGACTTGAGAGAATGATAACGGAGAGGATGCCACACATTTTCACAAAGGAACCA : TTGATTTTGATATATGTGGAGAACATGTTAAAACTAGAGAGTGGAGCAATTGGTGATCTTGTTGGGAGAACAATGCTTGTGGCAATTATGGATAAGCTAATAGATTTGGAT : GTAGATATAGCATGGGATGATATCTTACAAGAAGATTTCACCAAAGGCATCTTCGATATGGAGCTGGGAGATCTCGAATGGCCAATGGATGATGGCCAGCAAAATGGTGACGAG : CTCCAAATATCTTGGATGGAACGGTATTTTAGTGGAAATCTAAATGCTCAGAAATTGGATAGTTTAATCGTCCTTACCTTTGAACACCTTAACATTTGCAAAGAGAGTGGACGCCTGAGTCAG : GTTTTTCATACTCTTCTCCAGTCTTTTCAGCAAACTGTTTTGATGGCATACAAGTCTAAATTTGCTCAG : TTTGTGTTGTTTTACGCCTGTTCACTGGATCCTGAAAACTGCGGTAGGAGATTTGCCGATACGCTATTTCATAAATTTAAGTCAAGTAAATATCCAGAATGGAG : AATGAGTGCTGTTGCCTATCTTGCTAGTTATTTGGCTCGTGCGAAGTTTTTGCCCATCTCATTTGTTGCTGAATATGTAGAAAG : TTTGCTGGAATGGTGTTCTTCTTATTGCTTCAACCAGGGTGGCAGCATCAATCCAAAAGCTCACAAGGAATTCTATGCTGGGTGCCAG : GCCTTGATGTATGTACTTTGCTTTCGCATGAGATCAATGCTTGCTATTCCTCGCATCAGATCACGTATATCAAAGCATATAGAGGATATCCTGAGGCATCCTTTGAGCCCATTAATG : GTATGCTTGCCATCAATAGTGGAAGAATTTCTTCGGTTGGCAAAAGTGACTCATCTTGATGTGCCGGATAATGTTGTATCAAGTAACCTGCTTGAGTCGGAACTTTCAATGGCTTTTGGTGGTAGGGAGAGGCTTGACACATTTTTCCCGTTTGATCCCTGTCTTCTAATGAAATCTGACAG : ATTCATCCGGCCAAATTTTGTGTACTGGTCAATGGTTCGGAACTCTTATGACAATGATGATGATGATGAGGGTACTAGTGATGAAGACGATATTGAAATCTGTACAGCAGGGAACGGGATAAATATACCTAATGATGGAGCTGCCCGAAGTTATGATCAGGATCTCGATGAATTTGGTAATAAAATGAGCAAAATGTCCATAACACCTAAAGTTGCTCAATGGGGGGAATTACAATCCGGCAGGCAGATGCCTTCAAGTTTGCTACCTTGCCCTGATTCCTTGTAGAGATTGATCTGCACCGTTTGATGACCTTGAAAGAGGAAATGCTTGCCCTTCCATGGCAAAGAAGCGTCGTATCAAAATGCCTGTCCTGGTCCGTGGTTGGTTATGGCAAGACACTGAGATTATGTGATATCCATTATATCCTAGATTCATGAGAGGCCTTCACCCTGCCTGCCTGCCTGAATACATCCCGCGAGATGTTAAGAGGTCAAGTTTTGTGTTCACAGCTAATGTTATTTGTAATATTTAGCAATAGTTGGTTTGATGATGAGAACTAAATGTGTAAACACTCAAATTCTCTTGTATTTTTCTTGTTGGTGTTAATATATTATGGTAAGAGTATATTTTAAATGTTT</gDNA_template>
            <first_frame> C  H  C  L  A  P  L  W  L  I  S  S  S  T  G  N  S  L  S  P  S  P  T  K  S  K   : *  N  L  R  N  I  S  T  L  V  N  I  M  G  M  E  L  H  A  E  S  A  G  C  A  E  M  E  I  A  E  I  T  D  S  D  L  F  K  L  V  R  H  A  L  K  S  V  I  Q  :  G  D  P  D  Q  Y  E  Q  L  L  R  V  M  H  P  D  E  G  V  L  P  D  V  A  L  L  V  :  T  C  L  K  A  L  S  G  S  V  S  C  L  D  I  V  H  H  K  S  L  I  A  S  :  I  L  Q  M  S  M  W  N  Y  G  T  D  V  M  D  A  L  M  E  F  N  I  S  L  :  A  T  S  S  G  Q  Y  V  D  L  C  L  E  M  L  V  S  N  F  M  P  P  D  S  F  I  S  L  L  N  Q  P  R  G  I  L  R  K  G  Q  V  I  D  R  V  H  S  T  L  T  Y  I  A  K  L  V  P  L  S  P  L  R  L  E  R  M  I  T  E  R  M  P  H  I  F  T  K  E  P  :  L  I  L  I  Y  V  E  N  M  L  K  L  E  S  G  A  I  G  D  L  V  G  R  T  M  L  V  A  I  M  D  K  L  I  D  L  D  :  V  D  I  A  W  D  D  I  L  Q  E  D  F  T  K  G  I  F  D  M  E  L  G  D  L  E  W  P  M  D  D  G  Q  Q  N  G  D  E  :  L  Q  I  S  W  M  E  R  Y  F  S  G  N  L  N  A  Q  K  L  D  S  L  I  V  L  T  F  E  H  L  N  I  C  K  E  S  G  R  L  S  Q  :  V  F  H  T  L  L  Q  S  F  Q  Q  T  V  L  M  A  Y  K  S  K  F  A  Q  :  F  V  L  F  Y  A  C  S  L  D  P  E  N  C  G  R  R  F  A  D  T  L  F  H  K  F  K  S  S  K  Y  P  E  W  R :   M  S  A  V  A  Y  L  A  S  Y  L  A  R  A  K  F  L  P  I  S  F  V  A  E  Y  V  E  S :   L  L  E  W  C  S  S  Y  C  F  N  Q  G  G  S  I  N  P  K  A  H  K  E  F  Y  A  G  C  Q  :  A  L  M  Y  V  L  C  F  R  M  R  S  M  L  A  I  P  R  I  R  S  R  I  S  K  H  I  E  D  I  L  R  H  P  L  S  P  L  M  :  V  C  L  P  S  I  V  E  E  F  L  R  L  A  K  V  T  H  L  D  V  P  D  N  V  V  S  S  N  L  L  E  S  E  L  S  M  A  F  G  G  R  E  R  L  D  T  F  F  P  F  D  P  C  L  L  M  K  S  D  R :   F  I  R  P  N  F  V  Y  W  S  M  V  R  N  S  Y  D  N  D  D  D  D  E  G  T  S  D  E  D  D  I  E  I  C  T  A  G  N  G  I  N  I  P  N  D  G  A  A  R  S  Y  D  Q  D  L  D  E  F  G  N  K  M  S  K  M  S  I  T  P  K  V  A  Q  W  G  E  L  Q  S  G  R  Q  M  P  S  S  L  L  P  C  P  D  S  L  *  R  L  I  C  T  V  *  *  P  *  K  R  K  C  L  P  F  H  G  K  E  A  S  Y  Q  N  A  C  P  G  P  W  L  V  M  A  R  H  *  D  Y  V  I  S  I  I  S  *  I  H  E  R  P  S  P  C  L  P  A  *  I  H  P  A  R  C  *  E  V  K  F  C  V  H  S  *  C  Y  L  *  Y  L  A  I  V  G  L  M  M  R  T  K  C  V  N  T  Q  I  L  L  Y  F  S  C  W  C  *  Y  I  M  V  R  V  Y  F  K  C   </first_frame>
            <second_frame>  A  T  A  W  R  R  F  G  S  S  P  A  L  P  A  T  H  F  L  L  P  R  R  N  Q  S  :  K  I  C  A  I  F  Q  P  *  S  T  *  W  E  W  N  Y  M  L  K  V  R  V  V  L  R  W  R  L  L  R  L  R  I  Q  I  C  S  N  L  L  D  M  P  L  N  L  L  S  R :   V  I  Q  T  N  M  S  S  F  F  V  L  C  T  L  M  K  A  F  Y  L  M  W  P  Y  W  * :   H  V  *  K  L  C  Q  D  Q  F  L  V  *  T  L  F  T  I  N  L  L  L  H  L :   F  Y  K  *  A  C  G  T  M  E  L  M  *  W  M  L  *  W  N  L  I  Y  P  W :   L  H  P  V  G  S  M  *  I  C  A  W  K  C  L  *  A  I  L  C  L  L  I  P  S  Y  H  C  *  I  S  H  V  A  F  Y  G  R  A  K  S  L  T  V  S  I  Q  H  *  H  T  L  Q  S  *  F  L  S  R  P  *  D  L  R  E  *  *  R  R  G  C  H  T  F  S  Q  R  N  H :   *  F  *  Y  M  W  R  T  C  *  N  *  R  V  E  Q  L  V  I  L  L  G  E  Q  C  L  W  Q  L  W  I  S  *  *  I  W  M :   *  I  *  H  G  M  I  S  Y  K  K  I  S  P  K  A  S  S  I  W  S  W  E  I  S  N  G  Q  W  M  M  A  S  K  M  V  T  S :   S  K  Y  L  G  W  N  G  I  L  V  E  I  *  M  L  R  N  W  I  V  *  S  S  L  P  L  N  T  L  T  F  A  K  R  V  D  A  *  V  R :   F  F  I  L  F  S  S  L  F  S  K  L  F  *  W  H  T  S  L  N  L  L  S :   L  C  C  F  T  P  V  H  W  I  L  K  T  A  V  G  D  L  P  I  R  Y  F  I  N  L  S  Q  V  N  I  Q  N  G   : E  *  V  L  L  P  I  L  L  V  I  W  L  V  R  S  F  C  P  S  H  L  L  L  N  M  *  K   : V  C  W  N  G  V  L  L  I  A  S  T  R  V  A  A  S  I  Q  K  L  T  R  N  S  M  L  G  A  R :   P  *  C  M  Y  F  A  F  A  *  D  Q  C  L  L  F  L  A  S  D  H  V  Y  Q  S  I  *  R  I  S  *  G  I  L  *  A  H  *  W :   Y  A  C  H  Q  *  W  K  N  F  F  G  W  Q  K  *  L  I  L  M  C  R  I  M  L  Y  Q  V  T  C  L  S  R  N  F  Q  W  L  L  V  V  G  R  G  L  T  H  F  S  R  L  I  P  V  F  *  *  N  L  T   : D  S  S  G  Q  I  L  C  T  G  Q  W  F  G  T  L  M  T  M  M  M  M  M  R  V  L  V  M  K  T  I  L  K  S  V  Q  Q  G  T  G  *  I  Y  L  M  M  E  L  P  E  V  M  I  R  I  S  M  N  L  V  I  K  *  A  K  C  P  *  H  L  K  L  L  N  G  G  N  Y  N  P  A  G  R  C  L  Q  V  C  Y  L  A  L  I  P  C  R  D  *  S  A  P  F  D  D  L  E  R  G  N  A  C  P  S  M  A  K  K  R  R  I  K  M  P  V  L  V  R  G  W  L  W  Q  D  T  E  I  M  *  Y  P  L  Y  P  R  F  M  R  G  L  H  P  A  C  L  P  E  Y  I  P  R  D  V  K  R  S  S  F  V  F  T  A  N  V  I  C  N  I  *  Q  *  L  V  *  *  *  E  L  N  V  *  T  L  K  F  S  C  I  F  L  V  G  V  N  I  L  W  *  E  Y  I  L  N  V  </second_frame>
            <third_frame>   P  L  P  G  A  A  L  A  H  L  Q  L  Y  R  Q  L  T  F  S  F  P  D  E  I  K  V :   K  F  A  Q  Y  F  N  P  S  Q  H  N  G  N  G  I  T  C  *  K  C  G  L  C  *  D  G  D  C  *  D  Y  G  F  R  F  V  Q  T  C  *  T  C  P  *  I  C  Y  P   : G  *  S  R  P  I  *  A  A  S  S  C  Y  A  P  *  *  R  R  F  T  *  C  G  P  T  G   : D  M  F  K  S  S  V  R  I  S  F  L  S  R  H  C  S  P  *  I  S  Y  C  I   : Y  F  T  N  E  H  V  E  L  W  N  *  C  N  G  C  F  D  G  I  *  Y  I  L   : G  Y  I  Q  W  A  V  C  R  S  V  L  G  N  A  C  E  Q  F  Y  A  S  *  F  L  H  I  I  V  E  S  A  T  W  H  S  T  E  G  P  S  H  *  P  C  P  F  N  I  N  I  H  C  K  V  S  S  S  L  A  L  E  T  *  E  N  D  N  G  E  D  A  T  H  F  H  K  G  T   : I  D  F  D  I  C  G  E  H  V  K  T  R  E  W  S  N  W  *  S  C  W  E  N  N  A  C  G  N  Y  G  *  A  N  R  F  G   : C  R  Y  S  M  G  *  Y  L  T  R  R  F  H  Q  R  H  L  R  Y  G  A  G  R  S  R  M  A  N  G  *  W  P  A  K  W  *  R   : A  P  N  I  L  D  G  T  V  F  *  W  K  S  K  C  S  E  I  G  *  F  N  R  P  Y  L  *  T  P  *  H  L  Q  R  E  W  T  P  E  S   : G  F  S  Y  S  S  P  V  F  S  A  N  C  F  D  G  I  Q  V  *  I  C  S   : V  C  V  V  L  R  L  F  T  G  S  *  K  L  R  *  E  I  C  R  Y  A  I  S  *  I  *  V  K  *  I  S  R  M  E  :  N  E  C  C  C  L  S  C  *  L  F  G  S  C  E  V  F  A  H  L  I  C  C  *  I  C  R  K  :  F  A  G  M  V  F  F  L  L  L  Q  P  G  W  Q  H  Q  S  K  S  S  Q  G  I  L  C  W  V  P   : G  L  D  V  C  T  L  L  S  H  E  I  N  A  C  Y  S  S  H  Q  I  T  Y  I  K  A  Y  R  G  Y  P  E  A  S  F  E  P  I  N   : G  M  L  A  I  N  S  G  R  I  S  S  V  G  K  S  D  S  S  *  C  A  G  *  C  C  I  K  *  P  A  *  V  G  T  F  N  G  F  W  W  *  G  E  A  *  H  I  F  P  V  *  S  L  S  S  N  E  I  *  Q  :  I  H  P  A  K  F  C  V  L  V  N  G  S  E  L  L  *  Q  *  *  *  *  *  G  Y  *  *  *  R  R  Y  *  N  L  Y  S  R  E  R  D  K  Y  T  *  *  W  S  C  P  K  L  *  S  G  S  R  *  I  W  *  *  N  E  Q  N  V  H  N  T  *  S  C  S  M  G  G  I  T  I  R  Q  A  D  A  F  K  F  A  T  L  P  *  F  L  V  E  I  D  L  H  R  L  M  T  L  K  E  E  M  L  A  L  P  W  Q  R  S  V  V  S  K  C  L  S  W  S  V  V  G  Y  G  K  T  L  R  L  C  D  I  H  Y  I  L  D  S  *  E  A  F  T  L  P  A  C  L  N  T  S  R  E  M  L  R  G  Q  V  L  C  S  Q  L  M  L  F  V  I  F  S  N  S  W  F  D  D  E  N  *  M  C  K  H  S  N  S  L  V  F  F  L  L  V  L  I  Y  Y  G  K  S  I  F  *  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131010" stop="130864"/>
                    <exon start="130273" stop="130193"/>
                    <exon start="130080" stop="130009"/>
                    <exon start="129904" stop="129833"/>
                    <exon start="129754" stop="129518"/>
                    <exon start="129296" stop="129186"/>
                    <exon start="129088" stop="128975"/>
                    <exon start="127833" stop="127711"/>
                    <exon start="127630" stop="127562"/>
                    <exon start="127409" stop="127306"/>
                    <exon start="126512" stop="126429"/>
                    <exon start="126293" stop="126206"/>
                    <exon start="125723" stop="125607"/>
                    <exon start="124981" stop="124800"/>
                    <exon start="124643" stop="124358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1884</number_coding_nucleotides>
                  <number_encoded_amino_acids>628</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLRNISTLVNIMGMELHAESAGCAEMEIAEITDSDLFKLVRHALKSVIQGDPDQYEQLLRVMHPDEGVLPDVALLVTCLKALSGSVSCLDIVHHKSLIASILQMSMWNYGTDVMDALMEFNISLATSSGQYVDLCLEMLVSNFMPPDSFISLLNQPRGILRKGQVIDRVHSTLTYIAKLVPLSPLRLERMITERMPHIFTKEPLILIYVENMLKLESGAIGDLVGRTMLVAIMDKLIDLDVDIAWDDILQEDFTKGIFDMELGDLEWPMDDGQQNGDELQISWMERYFSGNLNAQKLDSLIVLTFEHLNICKESGRLSQVFHTLLQSFQQTVLMAYKSKFAQFVLFYACSLDPENCGRRFADTLFHKFKSSKYPEWRMSAVAYLASYLARAKFLPISFVAEYVESLLEWCSSYCFNQGGSINPKAHKEFYAGCQALMYVLCFRMRSMLAIPRIRSRISKHIEDILRHPLSPLMVCLPSIVEEFLRLAKVTHLDVPDNVVSSNLLESELSMAFGGRERLDTFFPFDPCLLMKSDRFIRPNFVYWSMVRNSYDNDDDDEGTSDEDDIEICTAGNGINIPNDGAARSYDQDLDEFGNKMSKMSITPKVAQWGELQSGRQMPSSLLPCPDSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="137972" PGL_stop="141275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137972" e_stop="138334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="137972" e_stop="138334" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137972" stop="138334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCAAATTATTGTCTTATCATTAACTGCCTAATAATTTTTATTTATTTTTCAATATGAAAATATTTACAAATTTTATAAGTTAGGATAAATAAATTAAAATGATTTTTTTTTTCTTTTAGGTATATAAACCCACGATGGATGTCGTTGGATTTTCTACAGAACCGAACAAGACACATTTCTGTCTTAGATAACTCATCCTTTCTCTTCCCTTTCTTCTTCTTCTTCTTCTTCTCTCTGTTCTCCACATTTCACGTATACTTTCAGAATTTTTTTTGGATTTACTTTGGACAGAAAAGCTACTAAATAGTGTGAGTCAATTTCTTTCCTTAAATAATTGTTTGGAGTTTTTTTTTTTTTTTC</gDNA_template>
            <first_frame> E  S  N  Y  C  L  I  I  N  C  L  I  I  F  I  Y  F  S  I  *  K  Y  L  Q  I  L  *  V  R  I  N  K  L  K  *  F  F  F  S  F  R  Y  I  N  P  R  W  M  S  L  D  F  L  Q  N  R  T  R  H  I  S  V  L  D  N  S  S  F  L  F  P  F  F  F  F  F  F  F  S  L  F  S  T  F  H  V  Y  F  Q  N  F  F  W  I  Y  F  G  Q  K  S  Y  *  I  V  *  V  N  F  F  P  *  I  I  V  W  S  F  F  F  F  F </first_frame>
            <second_frame>  N  Q  I  I  V  L  S  L  T  A  *  *  F  L  F  I  F  Q  Y  E  N  I  Y  K  F  Y  K  L  G  *  I  N  *  N  D  F  F  F  L  L  G  I  *  T  H  D  G  C  R  W  I  F  Y  R  T  E  Q  D  T  F  L  S  *  I  T  H  P  F  S  S  L  S  S  S  S  S  S  S  L  C  S  P  H  F  T  Y  T  F  R  I  F  F  G  F  T  L  D  R  K  A  T  K  *  C  E  S  I  S  F  L  K  *  L  F  G  V  F  F  F  F   </second_frame>
            <third_frame>   I  K  L  L  S  Y  H  *  L  P  N  N  F  Y  L  F  F  N  M  K  I  F  T  N  F  I  S  *  D  K  *  I  K  M  I  F  F  F  F  *  V  Y  K  P  T  M  D  V  V  G  F  S  T  E  P  N  K  T  H  F  C  L  R  *  L  I  L  S  L  P  F  L  L  L  L  L  L  L  S  V  L  H  I  S  R  I  L  S  E  F  F  L  D  L  L  W  T  E  K  L  L  N  S  V  S  Q  F  L  S  L  N  N  C  L  E  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138077" stop="138277"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFSFRYINPRWMSLDFLQNRTRHISVLDNSSFLFPFFFFFFFSLFSTFHVYFQNFFWIYFGQKSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="138132" e_stop="138282"/>
            <exon e_start="138371" e_stop="139131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.342" acc_prob="0.939" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="138132" e_stop="138282" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.342" acc_prob="0.939">
            <gDNA_intron_boundary i_start="138283" i_stop="138370" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138371" e_stop="139131" e_length="761"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138132" stop="138282"/>
              <exon start="138371" stop="139131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACCGAACAAGACACATTTCTGTCTTAGATAACTCATCCTTTCTCTTCCCTTTCTTCTTCTTCTTCTTCTTCTCTCTGTTCTCCACATTTCACGTATACTTTCAGAATTTTTTTTGGATTTACTTTGGACAGAAAAGCTACTAAATAGT : GAAAATACGGCGAAAAATAAGCTTTACTTTGCATGCTTTCATGTGGGTAAAGGTTTGAATTTGCTGTCATCGTTGATTGGCGCTTTCTAGAAACTTGTAGAAACGAAAAAACTTAGCTGCGGTTTTCATTTTTTCTTGATCTGCTGATTGGTTTGGATGGAGCGAAATTCCTTGCTTTGAATAATACATACAGAACAAGGAGAAAGGGCAGTCTGAGTTTAATTTTGTGGCCGGAGTTGTATTTATGTCGAATTAATTTATGTGGGTGTTTTTTTGTTTTCGATAAATTTTCAGAGAATTATTGAAAATGGGGTCGTTAGGAATGTCGATTGATGAGATTGTGCAAGAAATTATGAGAATTCATGGATCTCTACCGACAAGACCATCGATTGATGAGGTTGAAGCAGCAAGAGCTTTAATTGGAAATCTGGAGAAAGAAGATCAGTTGAAAATAGAAGCTATCATGAGGCAAAATAAAAGGAAAGGTGTTCCAGAAGAGCTATTCAAAATTTTGCAAGAGATGCAGAGGAACGCTCTTCTTTTTCAGAGTAAAGAACAAAAGAGGGAGGCCTTGAAACTTTTAGATCTCGAGAATATTCACAGTGTGTTCGACGATTTGATTCAGAGAGCTACCAAATGTTTGCCTTCTAAATCTCATGATAATGACCCGTCTTCTTCTTCTTCTTCAATTGAACCTAATGATTTGTCTTTGGCAAACCAAGTTTCCTTCTCCGGCAACAGCAACAGACGCCTTGAATCTC</gDNA_template>
            <first_frame> R  T  E  Q  D  T  F  L  S  *  I  T  H  P  F  S  S  L  S  S  S  S  S  S  S  L  C  S  P  H  F  T  Y  T  F  R  I  F  F  G  F  T  L  D  R  K  A  T  K  *   : *  K  Y  G  E  K  *  A  L  L  C  M  L  S  C  G  *  R  F  E  F  A  V  I  V  D  W  R  F  L  E  T  C  R  N  E  K  T  *  L  R  F  S  F  F  L  D  L  L  I  G  L  D  G  A  K  F  L  A  L  N  N  T  Y  R  T  R  R  K  G  S  L  S  L  I  L  W  P  E  L  Y  L  C  R  I  N  L  C  G  C  F  F  V  F  D  K  F  S  E  N  Y  *  K  W  G  R  *  E  C  R  L  M  R  L  C  K  K  L  *  E  F  M  D  L  Y  R  Q  D  H  R  L  M  R  L  K  Q  Q  E  L  *  L  E  I  W  R  K  K  I  S  *  K  *  K  L  S  *  G  K  I  K  G  K  V  F  Q  K  S  Y  S  K  F  C  K  R  C  R  G  T  L  F  F  F  R  V  K  N  K  R  G  R  P  *  N  F  *  I  S  R  I  F  T  V  C  S  T  I  *  F  R  E  L  P  N  V  C  L  L  N  L  M  I  M  T  R  L  L  L  L  L  Q  L  N  L  M  I  C  L  W  Q  T  K  F  P  S  P  A  T  A  T  D  A  L  N  L </first_frame>
            <second_frame>  E  P  N  K  T  H  F  C  L  R  *  L  I  L  S  L  P  F  L  L  L  L  L  L  L  S  V  L  H  I  S  R  I  L  S  E  F  F  L  D  L  L  W  T  E  K  L  L  N  S  :  E  N  T  A  K  N  K  L  Y  F  A  C  F  H  V  G  K  G  L  N  L  L  S  S  L  I  G  A  F  *  K  L  V  E  T  K  K  L  S  C  G  F  H  F  F  L  I  C  *  L  V  W  M  E  R  N  S  L  L  *  I  I  H  T  E  Q  G  E  R  A  V  *  V  *  F  C  G  R  S  C  I  Y  V  E  L  I  Y  V  G  V  F  L  F  S  I  N  F  Q  R  I  I  E  N  G  V  V  R  N  V  D  *  *  D  C  A  R  N  Y  E  N  S  W  I  S  T  D  K  T  I  D  *  *  G  *  S  S  K  S  F  N  W  K  S  G  E  R  R  S  V  E  N  R  S  Y  H  E  A  K  *  K  E  R  C  S  R  R  A  I  Q  N  F  A  R  D  A  E  E  R  S  S  F  S  E  *  R  T  K  E  G  G  L  E  T  F  R  S  R  E  Y  S  Q  C  V  R  R  F  D  S  E  S  Y  Q  M  F  A  F  *  I  S  *  *  *  P  V  F  F  F  F  F  N  *  T  *  *  F  V  F  G  K  P  S  F  L  L  R  Q  Q  Q  Q  T  P  *  I   </second_frame>
            <third_frame>   N  R  T  R  H  I  S  V  L  D  N  S  S  F  L  F  P  F  F  F  F  F  F  F  S  L  F  S  T  F  H  V  Y  F  Q  N  F  F  W  I  Y  F  G  Q  K  S  Y  *  I  V :   K  I  R  R  K  I  S  F  T  L  H  A  F  M  W  V  K  V  *  I  C  C  H  R  *  L  A  L  S  R  N  L  *  K  R  K  N  L  A  A  V  F  I  F  S  *  S  A  D  W  F  G  W  S  E  I  P  C  F  E  *  Y  I  Q  N  K  E  K  G  Q  S  E  F  N  F  V  A  G  V  V  F  M  S  N  *  F  M  W  V  F  F  C  F  R  *  I  F  R  E  L  L  K  M  G  S  L  G  M  S  I  D  E  I  V  Q  E  I  M  R  I  H  G  S  L  P  T  R  P  S  I  D  E  V  E  A  A  R  A  L  I  G  N  L  E  K  E  D  Q  L  K  I  E  A  I  M  R  Q  N  K  R  K  G  V  P  E  E  L  F  K  I  L  Q  E  M  Q  R  N  A  L  L  F  Q  S  K  E  Q  K  R  E  A  L  K  L  L  D  L  E  N  I  H  S  V  F  D  D  L  I  Q  R  A  T  K  C  L  P  S  K  S  H  D  N  D  P  S  S  S  S  S  S  I  E  P  N  D  L  S  L  A  N  Q  V  S  F  S  G  N  S  N  R  R  L  E  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138657" stop="139130"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFRELLKMGSLGMSIDEIVQEIMRIHGSLPTRPSIDEVEAARALIGNLEKEDQLKIEAIMRQNKRKGVPEELFKILQEMQRNALLFQSKEQKREALKLLDLENIHSVFDDLIQRATKCLPSKSHDNDPSSSSSSIEPNDLSLANQVSFSGNSNRRLES</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138166" stop="138282"/>
                    <exon start="138371" stop="138460"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILSLPFLLLLLLLSVLHISRILSEFFLDLLWTEKLLNSENTAKNKLYFACFHVGKGLNLLSSLIGAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="138126" e_stop="138282"/>
            <exon e_start="138665" e_stop="139344"/>
            <exon e_start="139485" e_stop="140398"/>
            <exon e_start="140478" e_stop="140655"/>
            <exon e_start="140848" e_stop="141275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.342" acc_prob="0.993" e_score="0.975"/>
          <exon-intron don_prob="0.960" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="138126" e_stop="138282" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.342" acc_prob="0.993">
            <gDNA_intron_boundary i_start="138283" i_stop="138664" i_length="382"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138665" e_stop="139344" e_length="680"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.990">
            <gDNA_intron_boundary i_start="139345" i_stop="139484" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="139485" e_stop="140398" e_length="914"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="140399" i_stop="140477" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="140478" e_stop="140655" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="140656" i_stop="140847" i_length="192"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="140848" e_stop="141275" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138126" stop="138282"/>
              <exon start="138665" stop="139344"/>
              <exon start="139485" stop="140398"/>
              <exon start="140478" stop="140655"/>
              <exon start="140848" stop="141275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTACAGAACCGAACAAGACACATTTCTGTCTTAGATAACTCATCCTTTCTCTTCCCTTTCTTCTTCTTCTTCTTCTTCTCTCTGTTCTCCACATTTCACGTATACTTTCAGAATTTTTTTTGGATTTACTTTGGACAGAAAAGCTACTAAATAGT : AGAATTATTGAAAATGGGGTCGTTAGGAATGTCGATTGATGAGATTGTGCAAGAAATTATGAGAATTCATGGATCTCTACCGACAAGACCATCGATTGATGAGGTTGAAGCAGCAAGAGCTTTAATTGGAAATCTGGAGAAAGAAGATCAGTTGAAAATAGAAGCTATCATGAGGCAAAATAAAAGGAAAGGTGTTCCAGAAGAGCTATTCAAAATTTTGCAAGAGATGCAGAGGAACGCTCTTCTTTTTCAGAGTAAAGAACAAAAGAGGGAGGCCTTGAAACTTTTAGATCTCGAGAATATTCACAGTGTGTTCGACGATTTGATTCAGAGAGCTACCAAATGTTTGCCTTCTAAATCTCATGATAATGACCCGTCTTCTTCTTCTTCTTCAATTGAACCTAATGATTTGTCTTTGGCAAACCAAGTTTCCTTCTCCGGCAACAGCAACAGACGCCTTGAATCTCCGGCAACCACAACTGCAGCTGCTTCTTCGTCGAGTTTTTATAACTCAAAAGACTCTATTAAAGCGTCCGAACTGTATAGTAGAGACGACAGTTACTTGAATAAGGCAAAAGCCACGTTTCTTGTGGATGGAATTGGTGTTGGACTTCGATCTGGGGATGCTTCATCAGGGCCTAAGATTGTTGATTCCACCTTAAAGCCGTCGGCGATAAGTG : GTCAAGATGGTGAGAAATTAAGTTTGATTAAGCTTGCTAGTATGATTGAAGTGTCATCCAAAAAAGGAAGTAGAGAGCTTATGCTACGGAATAAGTTATCTGATCAAGTAGAATGGCTTCCAGATTCTATAGGGAAGCTATCGAGTTTGATCACTTTGGATCTGTCTGAGAATCGCATTACGGTCCTACCCACCACCATAGGGGGGCTTTTATCATTGCAAAAGCTAGATTTGCACTCAAACAAAATTGTTGAACTGCCTGATTGTATTGGAGATCTTCTTAACTTGGTGTATCTTGATCTCAGTGGAAATAACTTGAAGTTGTTGCCCGCGAGTTTTGCTAGGTTAGCTCACCTTCAAGAACTTGATTTGAGCTCTAACATGCTATCAGTACTCCCTGAGACAATTGGCTCCTTAGTAAGTCTTAAGAAATTGATTGTGGAAACTAATGACCTTGAGGAACTTCCTCACACTATTGGTCAATGTACTTCGCTCAAAGAGCTTCGTGTGGACTACAATCATCTTAAAGCACTTCCTGAAGCAGTGGGACGACTTGAGTCGTTGGAGATTCTGACTGCGCGGTACAATAACATCAGACTGTTGCCTACAACTATGTCATCCCTTACAAGTTTGAAAGAGCTGAATGTTAGTTTCAATGAAATCGAATCAGTGCCTGAGAGCTTGTGTTTTGCTACTTCACTGGTAAAGCTGAACATAAGCAACAATTTTGCAGACCTGAGATCACTACCAAGGTCCATTGGTAACCTTGAGTTGCTCGAAGAATTGGACATGAGTAACAACCAGATACGCGTTCTTCCAGATTCTTTTAGGATGCTCTCAAGTTTGCGGGTCCTTAAAACTGATGGAAATCCTTTGGAAGTTCCACCAGGAAGCGTCCTTGAGAAGGGAGCACAG : GTTGTTGTACAATATATGTCTGATCTGGTTGCTAATAGAGATGTAAAGACGCAACCCGCAAAGAAGAAGAAGAAATCATGGACTCATATATGCTGTTTTTCAAGTTCCAACAAACGCCAGCGCAATGGCAGTATGGACTATGTTAATGCATGATGTGTTCCAGTTCCTCATAAATCTG : GGAAATGAGCTGTGATTTGGCTGGACGAAAGCTGCAAAAATTTCAGTTGAATTCAAATATTTTTGCCAGCGAGATTCAATCAACTTTCTTGTTGTTCCAGATCACTGCCACGTGGTTTTTTTAAATTCTCATTTCATTGTGATAATTCTTTTAATGCTCTTTCCTGTATTTTCCTCGATTATGTAAAAATATGAAATGAGATGTAAAATCTTATCTTATTTTTTGACTTTCAATATATTCAATGGATTTCTGATTTGTTGAATAAATTGCAAAAGTCAGCCTGAATTAATTTGTCATTATCCAACCGACGGCGAATTTGTTTTGAATCCCGTCATATTTTAAATAAGAAAATATGTTGTTAATAGGTCAAATAAAGATGGCTTAGAGCCGTGGATCGTGGATCAATGAGATTGTTTTACTCTTAATTA</gDNA_template>
            <first_frame> F  Y  R  T  E  Q  D  T  F  L  S  *  I  T  H  P  F  S  S  L  S  S  S  S  S  S  S  L  C  S  P  H  F  T  Y  T  F  R  I  F  F  G  F  T  L  D  R  K  A  T  K  *   : *  N  Y  *  K  W  G  R  *  E  C  R  L  M  R  L  C  K  K  L  *  E  F  M  D  L  Y  R  Q  D  H  R  L  M  R  L  K  Q  Q  E  L  *  L  E  I  W  R  K  K  I  S  *  K  *  K  L  S  *  G  K  I  K  G  K  V  F  Q  K  S  Y  S  K  F  C  K  R  C  R  G  T  L  F  F  F  R  V  K  N  K  R  G  R  P  *  N  F  *  I  S  R  I  F  T  V  C  S  T  I  *  F  R  E  L  P  N  V  C  L  L  N  L  M  I  M  T  R  L  L  L  L  L  Q  L  N  L  M  I  C  L  W  Q  T  K  F  P  S  P  A  T  A  T  D  A  L  N  L  R  Q  P  Q  L  Q  L  L  L  R  R  V  F  I  T  Q  K  T  L  L  K  R  P  N  C  I  V  E  T  T  V  T  *  I  R  Q  K  P  R  F  L  W  M  E  L  V  L  D  F  D  L  G  M  L  H  Q  G  L  R  L  L  I  P  P  *  S  R  R  R  *  V  :  V  K  M  V  R  N  *  V  *  L  S  L  L  V  *  L  K  C  H  P  K  K  E  V  E  S  L  C  Y  G  I  S  Y  L  I  K  *  N  G  F  Q  I  L  *  G  S  Y  R  V  *  S  L  W  I  C  L  R  I  A  L  R  S  Y  P  P  P  *  G  G  F  Y  H  C  K  S  *  I  C  T  Q  T  K  L  L  N  C  L  I  V  L  E  I  F  L  T  W  C  I  L  I  S  V  E  I  T  *  S  C  C  P  R  V  L  L  G  *  L  T  F  K  N  L  I  *  A  L  T  C  Y  Q  Y  S  L  R  Q  L  A  P  *  *  V  L  R  N  *  L  W  K  L  M  T  L  R  N  F  L  T  L  L  V  N  V  L  R  S  K  S  F  V  W  T  T  I  I  L  K  H  F  L  K  Q  W  D  D  L  S  R  W  R  F  *  L  R  G  T  I  T  S  D  C  C  L  Q  L  C  H  P  L  Q  V  *  K  S  *  M  L  V  S  M  K  S  N  Q  C  L  R  A  C  V  L  L  L  H  W  *  S  *  T  *  A  T  I  L  Q  T  *  D  H  Y  Q  G  P  L  V  T  L  S  C  S  K  N  W  T  *  V  T  T  R  Y  A  F  F  Q  I  L  L  G  C  S  Q  V  C  G  S  L  K  L  M  E  I  L  W  K  F  H  Q  E  A  S  L  R  R  E  H  R :   L  L  Y  N  I  C  L  I  W  L  L  I  E  M  *  R  R  N  P  Q  R  R  R  R  N  H  G  L  I  Y  A  V  F  Q  V  P  T  N  A  S  A  M  A  V  W  T  M  L  M  H  D  V  F  Q  F  L  I  N  L  :  G  N  E  L  *  F  G  W  T  K  A  A  K  I  S  V  E  F  K  Y  F  C  Q  R  D  S  I  N  F  L  V  V  P  D  H  C  H  V  V  F  L  N  S  H  F  I  V  I  I  L  L  M  L  F  P  V  F  S  S  I  M  *  K  Y  E  M  R  C  K  I  L  S  Y  F  L  T  F  N  I  F  N  G  F  L  I  C  *  I  N  C  K  S  Q  P  E  L  I  C  H  Y  P  T  D  G  E  F  V  L  N  P  V  I  F  *  I  R  K  Y  V  V  N  R  S  N  K  D  G  L  E  P  W  I  V  D  Q  *  D  C  F  T  L  N   </first_frame>
            <second_frame>  S  T  E  P  N  K  T  H  F  C  L  R  *  L  I  L  S  L  P  F  L  L  L  L  L  L  L  S  V  L  H  I  S  R  I  L  S  E  F  F  L  D  L  L  W  T  E  K  L  L  N  S  :  R  I  I  E  N  G  V  V  R  N  V  D  *  *  D  C  A  R  N  Y  E  N  S  W  I  S  T  D  K  T  I  D  *  *  G  *  S  S  K  S  F  N  W  K  S  G  E  R  R  S  V  E  N  R  S  Y  H  E  A  K  *  K  E  R  C  S  R  R  A  I  Q  N  F  A  R  D  A  E  E  R  S  S  F  S  E  *  R  T  K  E  G  G  L  E  T  F  R  S  R  E  Y  S  Q  C  V  R  R  F  D  S  E  S  Y  Q  M  F  A  F  *  I  S  *  *  *  P  V  F  F  F  F  F  N  *  T  *  *  F  V  F  G  K  P  S  F  L  L  R  Q  Q  Q  Q  T  P  *  I  S  G  N  H  N  C  S  C  F  F  V  E  F  L  *  L  K  R  L  Y  *  S  V  R  T  V  *  *  R  R  Q  L  L  E  *  G  K  S  H  V  S  C  G  W  N  W  C  W  T  S  I  W  G  C  F  I  R  A  *  D  C  *  F  H  L  K  A  V  G  D  K  W :   S  R  W  *  E  I  K  F  D  *  A  C  *  Y  D  *  S  V  I  Q  K  R  K  *  R  A  Y  A  T  E  *  V  I  *  S  S  R  M  A  S  R  F  Y  R  E  A  I  E  F  D  H  F  G  S  V  *  E  S  H  Y  G  P  T  H  H  H  R  G  A  F  I  I  A  K  A  R  F  A  L  K  Q  N  C  *  T  A  *  L  Y  W  R  S  S  *  L  G  V  S  *  S  Q  W  K  *  L  E  V  V  A  R  E  F  C  *  V  S  S  P  S  R  T  *  F  E  L  *  H  A  I  S  T  P  *  D  N  W  L  L  S  K  S  *  E  I  D  C  G  N  *  *  P  *  G  T  S  S  H  Y  W  S  M  Y  F  A  Q  R  A  S  C  G  L  Q  S  S  *  S  T  S  *  S  S  G  T  T  *  V  V  G  D  S  D  C  A  V  Q  *  H  Q  T  V  A  Y  N  Y  V  I  P  Y  K  F  E  R  A  E  C  *  F  Q  *  N  R  I  S  A  *  E  L  V  F  C  Y  F  T  G  K  A  E  H  K  Q  Q  F  C  R  P  E  I  T  T  K  V  H  W  *  P  *  V  A  R  R  I  G  H  E  *  Q  P  D  T  R  S  S  R  F  F  *  D  A  L  K  F  A  G  P  *  N  *  W  K  S  F  G  S  S  T  R  K  R  P  *  E  G  S  T   : G  C  C  T  I  Y  V  *  S  G  C  *  *  R  C  K  D  A  T  R  K  E  E  E  E  I  M  D  S  Y  M  L  F  F  K  F  Q  Q  T  P  A  Q  W  Q  Y  G  L  C  *  C  M  M  C  S  S  S  S  *  I  W :   E  M  S  C  D  L  A  G  R  K  L  Q  K  F  Q  L  N  S  N  I  F  A  S  E  I  Q  S  T  F  L  L  F  Q  I  T  A  T  W  F  F  *  I  L  I  S  L  *  *  F  F  *  C  S  F  L  Y  F  P  R  L  C  K  N  M  K  *  D  V  K  S  Y  L  I  F  *  L  S  I  Y  S  M  D  F  *  F  V  E  *  I  A  K  V  S  L  N  *  F  V  I  I  Q  P  T  A  N  L  F  *  I  P  S  Y  F  K  *  E  N  M  L  L  I  G  Q  I  K  M  A  *  S  R  G  S  W  I  N  E  I  V  L  L  L  I  </second_frame>
            <third_frame>   L  Q  N  R  T  R  H  I  S  V  L  D  N  S  S  F  L  F  P  F  F  F  F  F  F  F  S  L  F  S  T  F  H  V  Y  F  Q  N  F  F  W  I  Y  F  G  Q  K  S  Y  *  I  V :   E  L  L  K  M  G  S  L  G  M  S  I  D  E  I  V  Q  E  I  M  R  I  H  G  S  L  P  T  R  P  S  I  D  E  V  E  A  A  R  A  L  I  G  N  L  E  K  E  D  Q  L  K  I  E  A  I  M  R  Q  N  K  R  K  G  V  P  E  E  L  F  K  I  L  Q  E  M  Q  R  N  A  L  L  F  Q  S  K  E  Q  K  R  E  A  L  K  L  L  D  L  E  N  I  H  S  V  F  D  D  L  I  Q  R  A  T  K  C  L  P  S  K  S  H  D  N  D  P  S  S  S  S  S  S  I  E  P  N  D  L  S  L  A  N  Q  V  S  F  S  G  N  S  N  R  R  L  E  S  P  A  T  T  T  A  A  A  S  S  S  S  F  Y  N  S  K  D  S  I  K  A  S  E  L  Y  S  R  D  D  S  Y  L  N  K  A  K  A  T  F  L  V  D  G  I  G  V  G  L  R  S  G  D  A  S  S  G  P  K  I  V  D  S  T  L  K  P  S  A  I  S   : G  Q  D  G  E  K  L  S  L  I  K  L  A  S  M  I  E  V  S  S  K  K  G  S  R  E  L  M  L  R  N  K  L  S  D  Q  V  E  W  L  P  D  S  I  G  K  L  S  S  L  I  T  L  D  L  S  E  N  R  I  T  V  L  P  T  T  I  G  G  L  L  S  L  Q  K  L  D  L  H  S  N  K  I  V  E  L  P  D  C  I  G  D  L  L  N  L  V  Y  L  D  L  S  G  N  N  L  K  L  L  P  A  S  F  A  R  L  A  H  L  Q  E  L  D  L  S  S  N  M  L  S  V  L  P  E  T  I  G  S  L  V  S  L  K  K  L  I  V  E  T  N  D  L  E  E  L  P  H  T  I  G  Q  C  T  S  L  K  E  L  R  V  D  Y  N  H  L  K  A  L  P  E  A  V  G  R  L  E  S  L  E  I  L  T  A  R  Y  N  N  I  R  L  L  P  T  T  M  S  S  L  T  S  L  K  E  L  N  V  S  F  N  E  I  E  S  V  P  E  S  L  C  F  A  T  S  L  V  K  L  N  I  S  N  N  F  A  D  L  R  S  L  P  R  S  I  G  N  L  E  L  L  E  E  L  D  M  S  N  N  Q  I  R  V  L  P  D  S  F  R  M  L  S  S  L  R  V  L  K  T  D  G  N  P  L  E  V  P  P  G  S  V  L  E  K  G  A  Q  :  V  V  V  Q  Y  M  S  D  L  V  A  N  R  D  V  K  T  Q  P  A  K  K  K  K  K  S  W  T  H  I  C  C  F  S  S  S  N  K  R  Q  R  N  G  S  M  D  Y  V  N  A  *  C  V  P  V  P  H  K  S   : G  K  *  A  V  I  W  L  D  E  S  C  K  N  F  S  *  I  Q  I  F  L  P  A  R  F  N  Q  L  S  C  C  S  R  S  L  P  R  G  F  F  K  F  S  F  H  C  D  N  S  F  N  A  L  S  C  I  F  L  D  Y  V  K  I  *  N  E  M  *  N  L  I  L  F  F  D  F  Q  Y  I  Q  W  I  S  D  L  L  N  K  L  Q  K  S  A  *  I  N  L  S  L  S  N  R  R  R  I  C  F  E  S  R  H  I  L  N  K  K  I  C  C  *  *  V  K  *  R  W  L  R  A  V  D  R  G  S  M  R  L  F  Y  S  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138278" stop="138282"/>
                    <exon start="138665" stop="139344"/>
                    <exon start="139485" stop="140398"/>
                    <exon start="140478" stop="140630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1749</number_coding_nucleotides>
                  <number_encoded_amino_acids>583</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVELLKMGSLGMSIDEIVQEIMRIHGSLPTRPSIDEVEAARALIGNLEKEDQLKIEAIMRQNKRKGVPEELFKILQEMQRNALLFQSKEQKREALKLLDLENIHSVFDDLIQRATKCLPSKSHDNDPSSSSSSIEPNDLSLANQVSFSGNSNRRLESPATTTAAASSSSFYNSKDSIKASELYSRDDSYLNKAKATFLVDGIGVGLRSGDASSGPKIVDSTLKPSAISGQDGEKLSLIKLASMIEVSSKKGSRELMLRNKLSDQVEWLPDSIGKLSSLITLDLSENRITVLPTTIGGLLSLQKLDLHSNKIVELPDCIGDLLNLVYLDLSGNNLKLLPASFARLAHLQELDLSSNMLSVLPETIGSLVSLKKLIVETNDLEELPHTIGQCTSLKELRVDYNHLKALPEAVGRLESLEILTARYNNIRLLPTTMSSLTSLKELNVSFNEIESVPESLCFATSLVKLNISNNFADLRSLPRSIGNLELLEELDMSNNQIRVLPDSFRMLSSLRVLKTDGNPLEVPPGSVLEKGAQVVVQYMSDLVANRDVKTQPAKKKKKSWTHICCFSSSNKRQRNGSMDYVNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="144268" PGL_stop="146433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="144268" e_stop="144330"/>
            <exon e_start="145601" e_stop="145690"/>
            <exon e_start="145791" e_stop="145835"/>
            <exon e_start="145917" e_stop="146433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.867" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.233" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="144268" e_stop="144330" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.867" acc_prob="0.996">
            <gDNA_intron_boundary i_start="144331" i_stop="145600" i_length="1270"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="145601" e_stop="145690" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.233" acc_prob="0.986">
            <gDNA_intron_boundary i_start="145691" i_stop="145790" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="145791" e_stop="145835" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="145836" i_stop="145916" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="145917" e_stop="146433" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144268" stop="144330"/>
              <exon start="145601" stop="145690"/>
              <exon start="145791" stop="145835"/>
              <exon start="145917" stop="146433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578799" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCCGCTATCTCTCTCGCTGTAAGTGTTTTTCCGGCGATTCCTATTGGTGTTTTAGAAAATT : TACATTTGAGGATGAGTTAGCACCTATCCGAGGCTTTCAAGTGATTCAAACAACTATTAATGGAAGCTGGTCGGTTGGAAGACTGTGCTG : GAAACAAAAATGGGCTTCTCTTGCCTTACACCACTACACCTCAAG : TGCAATGATTGTTGATCGTGCAAACATGTCATTCTATTCATTTGTATTCAATACAGCCTTTGGAATACTTATCTATAAGTCGGGCATGGATATGAATTGGACTTGCTATGACAAAATTTGTGGGTTAGAAGAAAACAATTTCATAAGTGGTCGGTCTGCAACATTGCTGTCCTTGATTCCATGCATCATTTTTGGGACTGGAGGCGAATGATATATCTATATAAACTAACAAAATATTGAAAATTTGATTTTCGTTTAGGCTAATGTTTCACTCTACCATTTCATGTTTATTTATGTGACTTGGTCAAATTACCTTACATTCACCTTTTTCCTTTGTTATTTCCTTGATTTTACATCTGCCTTTGTGTCTCTTTCGGTGATTGAAGAACTTCAGCACTTGACAAATAGTCTGCCCAATTCTGTTGAGGTACAATGCATCGACGAGACACATTCTGCCTTGGGGAACTGCATAGCATGCAATGATCATATTGCTCTTATACATCCTTCTCTTGACAAG</gDNA_template>
            <first_frame> A  P  L  S  L  S  L  *  V  F  F  R  R  F  L  L  V  F  *  K  I  :  Y  I  *  G  *  V  S  T  Y  P  R  L  S  S  D  S  N  N  Y  *  W  K  L  V  G  W  K  T  V  L  :  E  T  K  M  G  F  S  C  L  T  P  L  H  L  K  :  C  N  D  C  *  S  C  K  H  V  I  L  F  I  C  I  Q  Y  S  L  W  N  T  Y  L  *  V  G  H  G  Y  E  L  D  L  L  *  Q  N  L  W  V  R  R  K  Q  F  H  K  W  S  V  C  N  I  A  V  L  D  S  M  H  H  F  W  D  W  R  R  M  I  Y  L  Y  K  L  T  K  Y  *  K  F  D  F  R  L  G  *  C  F  T  L  P  F  H  V  Y  L  C  D  L  V  K  L  P  Y  I  H  L  F  P  L  L  F  P  *  F  Y  I  C  L  C  V  S  F  G  D  *  R  T  S  A  L  D  K  *  S  A  Q  F  C  *  G  T  M  H  R  R  D  T  F  C  L  G  E  L  H  S  M  Q  *  S  Y  C  S  Y  T  S  F  S  *  Q  </first_frame>
            <second_frame>  L  R  Y  L  S  R  C  K  C  F  S  G  D  S  Y  W  C  F  R  K  F :   T  F  E  D  E  L  A  P  I  R  G  F  Q  V  I  Q  T  T  I  N  G  S  W  S  V  G  R  L  C  W :   K  Q  K  W  A  S  L  A  L  H  H  Y  T  S  S :   A  M  I  V  D  R  A  N  M  S  F  Y  S  F  V  F  N  T  A  F  G  I  L  I  Y  K  S  G  M  D  M  N  W  T  C  Y  D  K  I  C  G  L  E  E  N  N  F  I  S  G  R  S  A  T  L  L  S  L  I  P  C  I  I  F  G  T  G  G  E  *  Y  I  Y  I  N  *  Q  N  I  E  N  L  I  F  V  *  A  N  V  S  L  Y  H  F  M  F  I  Y  V  T  W  S  N  Y  L  T  F  T  F  F  L  C  Y  F  L  D  F  T  S  A  F  V  S  L  S  V  I  E  E  L  Q  H  L  T  N  S  L  P  N  S  V  E  V  Q  C  I  D  E  T  H  S  A  L  G  N  C  I  A  C  N  D  H  I  A  L  I  H  P  S  L  D  K </second_frame>
            <third_frame>   S  A  I  S  L  A  V  S  V  F  P  A  I  P  I  G  V  L  E  N   : L  H  L  R  M  S  *  H  L  S  E  A  F  K  *  F  K  Q  L  L  M  E  A  G  R  L  E  D  C  A   : G  N  K  N  G  L  L  L  P  Y  T  T  T  P  Q   : V  Q  *  L  L  I  V  Q  T  C  H  S  I  H  L  Y  S  I  Q  P  L  E  Y  L  S  I  S  R  A  W  I  *  I  G  L  A  M  T  K  F  V  G  *  K  K  T  I  S  *  V  V  G  L  Q  H  C  C  P  *  F  H  A  S  F  L  G  L  E  A  N  D  I  S  I  *  T  N  K  I  L  K  I  *  F  S  F  R  L  M  F  H  S  T  I  S  C  L  F  M  *  L  G  Q  I  T  L  H  S  P  F  S  F  V  I  S  L  I  L  H  L  P  L  C  L  F  R  *  L  K  N  F  S  T  *  Q  I  V  C  P  I  L  L  R  Y  N  A  S  T  R  H  I  L  P  W  G  T  A  *  H  A  M  I  I  L  L  L  Y  I  L  L  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144269" stop="144330"/>
                    <exon start="145601" stop="145690"/>
                    <exon start="145791" stop="145835"/>
                    <exon start="145917" stop="146127"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRYLSRCKCFSGDSYWCFRKFTFEDELAPIRGFQVIQTTINGSWSVGRLCWKQKWASLALHHYTSSAMIVDRANMSFYSFVFNTAFGILIYKSGMDMNWTCYDKICGLEENNFISGRSATLLSLIPCIIFGTGGE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0008G02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146176" stop="146433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANVSLYHFMFIYVTWSNYLTFTFFLCYFLDFTSAFVSLSVIEELQHLTNSLPNSVEVQCIDETHSALGNCIACNDHIALIHPSLDK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="144294" e_stop="144330"/>
            <exon e_start="145136" e_stop="145677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.867" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="144294" e_stop="144330" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.867" acc_prob="0.000">
            <gDNA_intron_boundary i_start="144331" i_stop="145135" i_length="805"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="145136" e_stop="145677" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144294" stop="144330"/>
              <exon start="145136" stop="145677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579852" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTTCCGGCGATTCCTATTGGTGTTTTAGAAAATT : TCCAAGCTCACCAATGCATACTGCTTAGTTGGAATAGGGGGTTCTAAAAACTTCTATAGGTTCATCTTTCTTGTTTTTCAAACTAATAGTTATGGAAGCTGCAGTGATAAACTAAAATATTAGAGAAAGAAAATGAAGGCTGAACTTTTTTTCGATAACCATGGAGTTTGGGCTAGCTTTCGTCCACCTCGATAAAACTTTGTCCACTAAGGTTAGGATAGACGGGAAGAAATGACCTTGTGTTTTTTATCTTCTAGAATTTGGACGCGAGACCTTATGGTTCACAATCTACCCATTAGGCCACACTCTCGGCCTCGGGTGCAAATGAAGGTTGAACGTTTAATGTGGAACAATAAGAAAAGGAAACATGAAGTGAATATAAATACTTAAAGATGAATAATGAGTCTTTCTTGTTAACTTTCCCTGTTTATAGAAAAAGTTGTAATTTCTGTGATTTCTTTCCAGTACATTTGAGGATGAGTTAGCACCTATCCGAGGCTTTCAAGTGATTCAAACAACTATTAATGGAAGCTGGTCGGTTG</gDNA_template>
            <first_frame> V  F  P  A  I  P  I  G  V  L  E  N   : F  Q  A  H  Q  C  I  L  L  S  W  N  R  G  F  *  K  L  L  *  V  H  L  S  C  F  S  N  *  *  L  W  K  L  Q  *  *  T  K  I  L  E  K  E  N  E  G  *  T  F  F  R  *  P  W  S  L  G  *  L  S  S  T  S  I  K  L  C  P  L  R  L  G  *  T  G  R  N  D  L  V  F  F  I  F  *  N  L  D  A  R  P  Y  G  S  Q  S  T  H  *  A  T  L  S  A  S  G  A  N  E  G  *  T  F  N  V  E  Q  *  E  K  E  T  *  S  E  Y  K  Y  L  K  M  N  N  E  S  F  L  L  T  F  P  V  Y  R  K  S  C  N  F  C  D  F  F  P  V  H  L  R  M  S  *  H  L  S  E  A  F  K  *  F  K  Q  L  L  M  E  A  G  R  L </first_frame>
            <second_frame>  F  F  R  R  F  L  L  V  F  *  K  I  :  S  K  L  T  N  A  Y  C  L  V  G  I  G  G  S  K  N  F  Y  R  F  I  F  L  V  F  Q  T  N  S  Y  G  S  C  S  D  K  L  K  Y  *  R  K  K  M  K  A  E  L  F  F  D  N  H  G  V  W  A  S  F  R  P  P  R  *  N  F  V  H  *  G  *  D  R  R  E  E  M  T  L  C  F  L  S  S  R  I  W  T  R  D  L  M  V  H  N  L  P  I  R  P  H  S  R  P  R  V  Q  M  K  V  E  R  L  M  W  N  N  K  K  R  K  H  E  V  N  I  N  T  *  R  *  I  M  S  L  S  C  *  L  S  L  F  I  E  K  V  V  I  S  V  I  S  F  Q  Y  I  *  G  *  V  S  T  Y  P  R  L  S  S  D  S  N  N  Y  *  W  K  L  V  G   </second_frame>
            <third_frame>   F  S  G  D  S  Y  W  C  F  R  K  F :   P  S  S  P  M  H  T  A  *  L  E  *  G  V  L  K  T  S  I  G  S  S  F  L  F  F  K  L  I  V  M  E  A  A  V  I  N  *  N  I  R  E  R  K  *  R  L  N  F  F  S  I  T  M  E  F  G  L  A  F  V  H  L  D  K  T  L  S  T  K  V  R  I  D  G  K  K  *  P  C  V  F  Y  L  L  E  F  G  R  E  T  L  W  F  T  I  Y  P  L  G  H  T  L  G  L  G  C  K  *  R  L  N  V  *  C  G  T  I  R  K  G  N  M  K  *  I  *  I  L  K  D  E  *  *  V  F  L  V  N  F  P  C  L  *  K  K  L  *  F  L  *  F  L  S  S  T  F  E  D  E  L  A  P  I  R  G  F  Q  V  I  Q  T  T  I  N  G  S  W  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0008G02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 35 chains have been computed
$ 
$ memory statistics:
$ 29064 bytes spliced alignments in total
$ 13 spliced alignments have been stored
$ 2235 bytes was the average size of a spliced alignment
$ 16352 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1816 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 44 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:06:31
-->
