<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:47:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709586" ref_strand="+" ref_description="SGN-E709586 [FA52CA07]">
      <seq>gtggagggccagcagctataggagagatgtcatttgatgagcatcagttgaggattgaaaatgctcgtcttagagatgagattgacaggataactggaatagctggaaagtatgttggtaaatcagcccttggatattctcatcaacttcctcttcctcagcccgaagctcctcgggttctggatcttgcttttgggcctcaatcgggcctgcttggagaaatgtacgctgctggtgaccttctaagaactgctgttacgggccttacagatgctgagaagcccgtggtcattgagcttgctgttactgcaatggaggaacttataaggatggctcaaactgaagagccattatggttgccaagctcaggctctgagactttatgtgagcaagaatatgctcgtattttccctcgaggccttggacctaagccagctacactcaattctgaagcctcacgagaatctgctgttgtgattatgaatcatatcaatttagttgagattttgatggatgtgaaccaatggactactgtttttgctggtctggtgtcaaaagcaatgactcttgaagtcttatcaactggtgtcgcaggaaatcacactggagcattgcaagtgatgacagcagaatttcaagttccatctccacttgttccaactcgggagaactatttcttaagatactgtaaacaacatggtgaagggacttgggtagtggttgatgtttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0006L05.1" temp_strand="-" temp_description="C02HBa0006L05.1  AC215350.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0006L05 sequenced_by:kribb upload_account_name:korea">
        <position start="10572" stop="8626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10272" g_stop="10193" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10192" i_stop="9771" i_length="422">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9770" g_stop="9333" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="518" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9332" i_stop="9250" i_length="83">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.618" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9249" g_stop="9148" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="620" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9147" i_stop="9039" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9038" g_stop="8926" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="733" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0006L05.1" gen_strand="-" ref_id="SGN-E709586" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0006L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10272" e_stop="10193"/>
          <exon e_start="9770" e_stop="9333"/>
          <exon e_start="9249" e_stop="9148"/>
          <exon e_start="9038" e_stop="8926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGGGCCAGCAGCTATAGGAGAGATGTCATTTGATGAGCATCAGTTGAGGATTGAAAATGCTCGTCTTAGAGATGAGGTAGGAGCATTACTAATTGAAAACCTGCCTCATTTTTCAAGTTATTAATTTTAGTACTTGTGAACACACCGATTATAAATTTTGCCTTTAACGGTTTGGATGAACACTCAATCCTACATAACCCTAAATGTTTTGATAAAGGTGATGCCCCCGACCCATTTTACACCTTTCCGTTCATTCGTCCACAATCCCCTCATCCTTTTAATTTACGTAATACATTTTTCTTTTTAGCCTATAAGAAACAATTTAATTTTGAAATTATAATTTTACCTTTTTAACTTTCCACACAATTAAACATTGTCACTTGTATTAGGACTGAGCAAGAAGATTTTAAAACGGAGTAATAAGAAAATAGTTCACATGAAATGGCATTCAAAGTGACTTGACGGAAATTTTAAGTTATTTTATGTTTTATGATACAGATTGACAGGATAACTGGAATAGCTGGAAAGTATGTTGGTAAATCAGCCCTTGGATATTCTCATCAACTTCCTCTTCCTCAGCCCGAAGCTCCTCGGGTTCTGGATCTTGCTTTTGGGCCTCAATCGGGCCTGCTTGGAGAAATGTACGCTGCTGGTGACCTTCTAAGAACTGCTGTTACGGGCCTTACAGATGCTGAGAAGCCCGTGGTCATTGAGCTTGCTGTTACTGCAATGGAGGAACTTATAAGGATGGCTCAAACTGAAGAGCCATTATGGTTGCCAAGCTCAGGCTCTGAGACTTTATGTGAGCAAGAATATGCTCGTATTTTCCCTCGAGGCCTTGGACCTAAGCCAGCTACACTCAATTCTGAAGCCTCACGAGAATCTGCTGTTGTGATTATGAATCATATCAATTTAGTTGAGATTTTGATGGATGTGGTAAGATTTCTAATTTTAATGTGCAACCTTACCTTCCTCGGACGAATACTTTGTGCACATTTTTAACTAATTGTACATTTCAGAACCAATGGACTACTGTTTTTGCTGGTCTGGTGTCAAAAGCAATGACTCTTGAAGTCTTATCAACTGGTGTCGCAGGAAATCACAATGGAGCATTGCAAGTGGTATTGTTCAGATTTCACTTAACAATATTTTGTTTGAATTCTTTCCTTCTTTTTTAAACAGATGAAATATACTCTAATTGATTTCCTTTTTTTGATGTTCTAATTTTAGATGACAGCAGAATTTCAAGTTCCATCTCCACTTGTTCCAACTCGGGAGAACTATTTCTTAAGATACTGTAAACAACATGGTGAAGGGACTTGGGTAGTGGTTGATGTTTCCCT</genome_strand>
        <mrna_strand>GTGGAGGGCCAGCAGCTATAGGAGAGATGTCATTTGATGAGCATCAGTTGAGGATTGAAAATGCTCGTCTTAGAGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAGGATAACTGGAATAGCTGGAAAGTATGTTGGTAAATCAGCCCTTGGATATTCTCATCAACTTCCTCTTCCTCAGCCCGAAGCTCCTCGGGTTCTGGATCTTGCTTTTGGGCCTCAATCGGGCCTGCTTGGAGAAATGTACGCTGCTGGTGACCTTCTAAGAACTGCTGTTACGGGCCTTACAGATGCTGAGAAGCCCGTGGTCATTGAGCTTGCTGTTACTGCAATGGAGGAACTTATAAGGATGGCTCAAACTGAAGAGCCATTATGGTTGCCAAGCTCAGGCTCTGAGACTTTATGTGAGCAAGAATATGCTCGTATTTTCCCTCGAGGCCTTGGACCTAAGCCAGCTACACTCAATTCTGAAGCCTCACGAGAATCTGCTGTTGTGATTATGAATCATATCAATTTAGTTGAGATTTTGATGGATGTG...................................................................................AACCAATGGACTACTGTTTTTGCTGGTCTGGTGTCAAAAGCAATGACTCTTGAAGTCTTATCAACTGGTGTCGCAGGAAATCACACTGGAGCATTGCAAGTG.............................................................................................................ATGACAGCAGAATTTCAAGTTCCATCTCCACTTGTTCCAACTCGGGAGAACTATTTCTTAAGATACTGTAAACAACATGGTGAAGGGACTTGGGTAGTGGTTGATGTTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265216" ref_strand="+" ref_description="SGN-E265216 [cLEI-2-B12]">
      <seq>gagaaggtattcaagatgtttaatagccaccagcacttgctcgatatatcgtcctcagctcaacgaacacctgataacgagttggatttcattcgtgatgaagagtttgatagcaactctggtgctgataacatggaagctcccaattcaggtgatgacgatcaagctgatccaaaccaacctccaaacaagaagaagcgttatcatcgccacactcagaatcagattcaggaaatggagtccttttacaaggaatgcaatcatccagatgacaagcaaaggaaggaattgggaagaagacttggtttggagccattacaagtgaaattttggttccagaacaagcgtactcagatgaaggctcaacatgagcgatgtgagaacacacagttgaggaatgaaaatgagaagcttcgcgctgagaacataaggtacaaagaagctttgagtaatgcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0006L05.1" temp_strand="-" temp_description="C02HBa0006L05.1  AC215350.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0006L05 sequenced_by:kribb upload_account_name:korea">
        <position start="11287" stop="9983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10987" g_stop="10746" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10745" i_stop="10661" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10660" g_stop="10543" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="360" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10542" i_stop="10382" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10381" g_stop="10283" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="459" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0006L05.1" gen_strand="-" ref_id="SGN-E265216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0006L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10987" e_stop="10746"/>
          <exon e_start="10660" e_stop="10543"/>
          <exon e_start="10381" e_stop="10283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGGTATTCAAGATGTTTAATAACCACCAGCACTTGCTCGATATATCGTCCTCAGCTCAACGAACACCTGATAACGAGTTGGATTTCATTCGTGATGAAGAGTTTGATAGCAACTCTGGTGCTGATAACATGGAAGCTCCCAATTCAGGTGATGACGATCAAGCTGATCCAAACCAACCTCCAAACAAGAAGAAGCGTTATCATCGCCACACTCAGAATCAGATTCAGGAAATGGAGTCGTAAGTAATTTAATTTATATATACTGACAGTACATTTATTAACTATATATAACAATTGTTCCGTTTCTTTTTTGTCATTGTACAGCTTTTACAAGGAATGCAATCATCCAGATGACAAGCAAAGGAAGGAATTGGGAAGAAGACTTGGTTTGGAGCCATTACAAGTGAAATTTTGGTTCCAGAACAAGCGTACTCAGATGAAGGTGAAAAACTCTTTTTTCTTTTCTTGTCTGTAATGTAAAGTTAATATATTTGATGTAAAAAATTGAGATGAATACATTCATTCAATTTATATAGACAGGATGATTGAGGTACGTGTGCTTGAAAACTTTATAATTAGATTGTGATTTTATTGTTGTTACAGGCTCAACATGAGCGATGTGAGAACACACAGTTGAGGAATGAAAATGAGAAGCTTCGCGCTGAGAACATAAGGTACAAAGAAGCTTTGAGTAATGCAGCA</genome_strand>
        <mrna_strand>GAGAAGGTATTCAAGATGTTTAATAGCCACCAGCACTTGCTCGATATATCGTCCTCAGCTCAACGAACACCTGATAACGAGTTGGATTTCATTCGTGATGAAGAGTTTGATAGCAACTCTGGTGCTGATAACATGGAAGCTCCCAATTCAGGTGATGACGATCAAGCTGATCCAAACCAACCTCCAAACAAGAAGAAGCGTTATCATCGCCACACTCAGAATCAGATTCAGGAAATGGAGTC.....................................................................................CTTTTACAAGGAATGCAATCATCCAGATGACAAGCAAAGGAAGGAATTGGGAAGAAGACTTGGTTTGGAGCCATTACAAGTGAAATTTTGGTTCCAGAACAAGCGTACTCAGATGAAG.................................................................................................................................................................GCTCAACATGAGCGATGTGAGAACACACAGTTGAGGAATGAAAATGAGAAGCTTCGCGCTGAGAACATAAGGTACAAAGAAGCTTTGAGTAATGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0006L05.1" temp_strand="-" temp_description="C02HBa0006L05.1  AC215350.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0006L05 sequenced_by:kribb upload_account_name:korea">
        <position start="24064" stop="22657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23764" g_stop="22957" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0006L05.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0006L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23764" e_stop="22957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0006L05.1" temp_strand="-" temp_description="C02HBa0006L05.1  AC215350.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0006L05 sequenced_by:kribb upload_account_name:korea">
        <position start="24723" stop="23475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24423" g_stop="23775" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0006L05.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0006L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24423" e_stop="23775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0006L05.1" temp_strand="-" temp_description="C02HBa0006L05.1  AC215350.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0006L05 sequenced_by:kribb upload_account_name:korea">
        <position start="24722" stop="23738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24422" g_stop="24038" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0006L05.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0006L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24422" e_stop="24038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414241" ref_strand="-" ref_description="SGN-E414241 [STM-19-O5]">
      <seq>agaaacaaaagcggaggaaagccaagtcgacatcctctcctaggtctggttcatcatcctcgtcaaggtcatcacgagcagaaaaatccaagactaaatttgtcgaaggcaatgctaaaccactaaacatagaggtggcttaatggtacaaacttgtagcttaaactgctgagaattctgtcattgcctagatatcgaagttgttcatagtcctcatggaaggatccacaagaaagatgaggagggtatagaaacttgagtagatgtagagagtgttacactacaaatgttataaagtaatatggaagaaacctaaaaaagtagtaggagggcttagagatgtgaaaacacaaggtgaaaaacttccaaaaccaggacaatgtttgggagaattataaattctttttcctttatttcttctatttatttttctcttagttttatcgttcctcttcttgtaactacaacgaggaaggatcgtgtaaagagttgaatcgtttagtctattggttgaagattgtactaatgctaattatttgatttgaacaatctccagggattctctcatactcctggtttcattatatgtagatattggtattctttttttgtgtataaaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0006L05.1" temp_strand="-" temp_description="C02HBa0006L05.1  AC215350.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0006L05 sequenced_by:kribb upload_account_name:korea">
        <position start="29606" stop="28369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29306" g_stop="28721" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="636"/>
      <MATCH_line gen_id="C02HBa0006L05.1" gen_strand="-" ref_id="SGN-E414241" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0006L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414241" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29306" e_stop="28721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAAAGCGGAGGAAGGCCAAGTCGACATCCTCTCCCAGGTCTGCTTCATCATCCTCGTCAAGATCATCACGAGCAGAAAAATCCAAGACTAAATTTGTCGAAGGCAATGCTAAACCACTTAACATAGAGGTGGCTTAATGGTACAAACTTGCAGCTTAAATTGCTGAGAATTCTGTCATTGCTTAGCTATTGAAGTTGTTCATAGTCCTCATGGAAGTATCCACGAGAAAGATGAGGACGGTATAGAAAATTGAGTAGATGTAGAGAGTGTTACACTGCAAATGTGATAAAACTAATATGGAAGAAACCTAAAGAAGTAGGAGGAGGACTTAGAGATGTGAAAACACAAGGTGAAAAACTAAAAAAAAAATTCAAAACCAGGACAATGTTTTGGGAGAATTATAAATTC-TTTTCCTTTATTTCTTCTATTTATTTTTCTCTTAGTTTTATCGTTCCTCTTCTTGGAACTACAACGAGGAAGGATCGTGTAAAGAGTTGAATCGTTTAGTCTATTGGTTGAAGATTGTACTAATGCTAATTATTTGATTTGAACAATCTCCAGGGATTCTCTCATACTCCTT</genome_strand>
        <mrna_strand>AGAAACAAAAGCGGAGGAAAGCCAAGTCGACATCCTCTCCTAGGTCTGGTTCATCATCCTCGTCAAGGTCATCACGAGCAGAAAAATCCAAGACTAAATTTGTCGAAGGCAATGCTAAACCACTAAACATAGAGGTGGCTTAATGGTACAAACTTGTAGCTTAAACTGCTGAGAATTCTGTCATTGCCTAGATATCGAAGTTGTTCATAGTCCTCATGGAAGGATCCACAAGAAAGATGAGGAGGGTATAGAAACTTGAGTAGATGTAGAGAGTGTTACACTACAAATGTTAT-AAAGTAATATGGAAGAAACCTAAAAAAGTAGTAGGAGGGCTTAGAGATGTGAAAACACAAGGTGAAAAACT----------TCCAAAACCAGGACAATG-TTTGGGAGAATTATAAATTCTTTTTCCTTTATTTCTTCTATTTATTTTTCTCTTAGTTTTATCGTTCCTCTTCTTGTAACTACAACGAGGAAGGATCGTGTAAAGAGTTGAATCGTTTAGTCTATTGGTTGAAGATTGTACTAATGCTAATTATTTGATTTGAACAATCTCCAGGGATTCTCTCATACTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280219" ref_strand="-" ref_description="SGN-E280219 [cLEL-7-N9](-)">
      <seq>gcacgagtccacctctaactttctctcttctcctaattcttcttcaactctctatttttgtaccatttcccctttctctctttctttccatttttcatttctcacattttcccactttggcctcttttcttgatttcaaactttttttttttttgcatggttattacatttttattatgtctagattacttgaagaaagatgatgggcaatgcagcagtaagttgaggaaaagtagtaaccctttcatttctatcagattttatcaagaaaggcgaaggaattggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0006L05-1hlRy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0006L05.1" temp_strand="-" temp_description="C02HBa0006L05.1  AC215350.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0006L05 sequenced_by:kribb upload_account_name:korea">
        <position start="31962" stop="31096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31668" g_stop="31397" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31396" i_stop="31273" i_length="124">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31272" g_stop="31256" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="289" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0006L05.1" gen_strand="-" ref_id="SGN-E280219" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0006L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280219" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31668" e_stop="31397"/>
          <exon e_start="31272" e_stop="31256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTCGTCCACCTCTAACTTTCTCTCTTCTCCTAATTCTTCTTCAACTCTCTATTTTTGTACCATTTCCCATTTTTCTCTTTCTTTCCATTTTTCATTTCTCACATTTTCCCACTTTGGCCTCTTTTCTTGATTTCAAACTTTTTTTTTTTTTGCATGGTTATTACATTTTTATTATGTCTAGATTACTTGAAGAAAGATGATGGGCAATGCAGCAGTAAGTTGAGGAAAAGTAGTAACCCTTTCATTTCTATCAGATTTTATCAAGAAAGGTATTCTACTCAACCCCCAACACACACACAAAAAAAAGATTCAATCTTTATATCATGCAATTTCTATCTGTATGTTGAGAAGGGTAATTAAAGGTCAATTTTTTTTATTTTTTTTTTGGTTTAGGCGAAGGAATTGGTTCT</genome_strand>
        <mrna_strand>GCACGAGTCCACCTCTAACTTTCTCTCTTCTCCTAATTCTTCTTCAACTCTCTATTTTTGTACCATTTCCCCTTTCTCTCTTTCTTTCCATTTTTCATTTCTCACATTTTCCCACTTTGGCCTCTTTTCTTGATTTCAAACTTTTTTTTTTTTTGCATGGTTATTACATTTTTATTATGTCTAGATTACTTGAAGAAAGATGATGGGCAATGCAGCAGTAAGTTGAGGAAAAGTAGTAACCCTTTCATTTCTATCAGATTTTATCAAGAAAG............................................................................................................................GCGAAGGAATTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10272" PGL_stop="8926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10272" e_stop="10193"/>
            <exon e_start="9770" e_stop="9333"/>
            <exon e_start="9249" e_stop="9148"/>
            <exon e_start="9038" e_stop="8926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.618" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10272" e_stop="10193" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10192" i_stop="9771" i_length="422"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9770" e_stop="9333" e_length="438"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.618">
            <gDNA_intron_boundary i_start="9332" i_stop="9250" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="9249" e_stop="9148" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9147" i_stop="9039" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9038" e_stop="8926" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10272" stop="10193"/>
              <exon start="9770" stop="9333"/>
              <exon start="9249" stop="9148"/>
              <exon start="9038" stop="8926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGAGGGCCAGCAGCTATAGGAGAGATGTCATTTGATGAGCATCAGTTGAGGATTGAAAATGCTCGTCTTAGAGATGAG : ATTGACAGGATAACTGGAATAGCTGGAAAGTATGTTGGTAAATCAGCCCTTGGATATTCTCATCAACTTCCTCTTCCTCAGCCCGAAGCTCCTCGGGTTCTGGATCTTGCTTTTGGGCCTCAATCGGGCCTGCTTGGAGAAATGTACGCTGCTGGTGACCTTCTAAGAACTGCTGTTACGGGCCTTACAGATGCTGAGAAGCCCGTGGTCATTGAGCTTGCTGTTACTGCAATGGAGGAACTTATAAGGATGGCTCAAACTGAAGAGCCATTATGGTTGCCAAGCTCAGGCTCTGAGACTTTATGTGAGCAAGAATATGCTCGTATTTTCCCTCGAGGCCTTGGACCTAAGCCAGCTACACTCAATTCTGAAGCCTCACGAGAATCTGCTGTTGTGATTATGAATCATATCAATTTAGTTGAGATTTTGATGGATGTG : AACCAATGGACTACTGTTTTTGCTGGTCTGGTGTCAAAAGCAATGACTCTTGAAGTCTTATCAACTGGTGTCGCAGGAAATCACAATGGAGCATTGCAAGTG : ATGACAGCAGAATTTCAAGTTCCATCTCCACTTGTTCCAACTCGGGAGAACTATTTCTTAAGATACTGTAAACAACATGGTGAAGGGACTTGGGTAGTGGTTGATGTTTCCCT</gDNA_template>
            <first_frame> V  E  G  Q  Q  L  *  E  R  C  H  L  M  S  I  S  *  G  L  K  M  L  V  L  E  M  R :   L  T  G  *  L  E  *  L  E  S  M  L  V  N  Q  P  L  D  I  L  I  N  F  L  F  L  S  P  K  L  L  G  F  W  I  L  L  L  G  L  N  R  A  C  L  E  K  C  T  L  L  V  T  F  *  E  L  L  L  R  A  L  Q  M  L  R  S  P  W  S  L  S  L  L  L  L  Q  W  R  N  L  *  G  W  L  K  L  K  S  H  Y  G  C  Q  A  Q  A  L  R  L  Y  V  S  K  N  M  L  V  F  S  L  E  A  L  D  L  S  Q  L  H  S  I  L  K  P  H  E  N  L  L  L  *  L  *  I  I  S  I  *  L  R  F  *  W  M  * :   T  N  G  L  L  F  L  L  V  W  C  Q  K  Q  *  L  L  K  S  Y  Q  L  V  S  Q  E  I  T  M  E  H  C  K  * :   *  Q  Q  N  F  K  F  H  L  H  L  F  Q  L  G  R  T  I  S  *  D  T  V  N  N  M  V  K  G  L  G  *  W  L  M  F  P  </first_frame>
            <second_frame>  W  R  A  S  S  Y  R  R  D  V  I  *  *  A  S  V  E  D  *  K  C  S  S  *  R  *   : D  *  Q  D  N  W  N  S  W  K  V  C  W  *  I  S  P  W  I  F  S  S  T  S  S  S  S  A  R  S  S  S  G  S  G  S  C  F  W  A  S  I  G  P  A  W  R  N  V  R  C  W  *  P  S  K  N  C  C  Y  G  P  Y  R  C  *  E  A  R  G  H  *  A  C  C  Y  C  N  G  G  T  Y  K  D  G  S  N  *  R  A  I  M  V  A  K  L  R  L  *  D  F  M  *  A  R  I  C  S  Y  F  P  S  R  P  W  T  *  A  S  Y  T  Q  F  *  S  L  T  R  I  C  C  C  D  Y  E  S  Y  Q  F  S  *  D  F  D  G  C   : E  P  M  D  Y  C  F  C  W  S  G  V  K  S  N  D  S  *  S  L  I  N  W  C  R  R  K  S  Q  W  S  I  A  S   : D  D  S  R  I  S  S  S  I  S  T  C  S  N  S  G  E  L  F  L  K  I  L  *  T  T  W  *  R  D  L  G  S  G  *  C  F  P </second_frame>
            <third_frame>   G  G  P  A  A  I  G  E  M  S  F  D  E  H  Q  L  R  I  E  N  A  R  L  R  D  E  :  I  D  R  I  T  G  I  A  G  K  Y  V  G  K  S  A  L  G  Y  S  H  Q  L  P  L  P  Q  P  E  A  P  R  V  L  D  L  A  F  G  P  Q  S  G  L  L  G  E  M  Y  A  A  G  D  L  L  R  T  A  V  T  G  L  T  D  A  E  K  P  V  V  I  E  L  A  V  T  A  M  E  E  L  I  R  M  A  Q  T  E  E  P  L  W  L  P  S  S  G  S  E  T  L  C  E  Q  E  Y  A  R  I  F  P  R  G  L  G  P  K  P  A  T  L  N  S  E  A  S  R  E  S  A  V  V  I  M  N  H  I  N  L  V  E  I  L  M  D  V  :  N  Q  W  T  T  V  F  A  G  L  V  S  K  A  M  T  L  E  V  L  S  T  G  V  A  G  N  H  N  G  A  L  Q  V  :  M  T  A  E  F  Q  V  P  S  P  L  V  P  T  R  E  N  Y  F  L  R  Y  C  K  Q  H  G  E  G  T  W  V  V  V  D  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0006L05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10270" stop="10193"/>
                    <exon start="9770" stop="9333"/>
                    <exon start="9249" stop="9148"/>
                    <exon start="9038" stop="8928"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGPAAIGEMSFDEHQLRIENARLRDEIDRITGIAGKYVGKSALGYSHQLPLPQPEAPRVLDLAFGPQSGLLGEMYAAGDLLRTAVTGLTDAEKPVVIELAVTAMEELIRMAQTEEPLWLPSSGSETLCEQEYARIFPRGLGPKPATLNSEASRESAVVIMNHINLVEILMDVNQWTTVFAGLVSKAMTLEVLSTGVAGNHNGALQVMTAEFQVPSPLVPTRENYFLRYCKQHGEGTWVVVDVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10987" PGL_stop="10283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10987" e_stop="10746"/>
            <exon e_start="10660" e_stop="10543"/>
            <exon e_start="10381" e_stop="10283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="10987" e_stop="10746" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10745" i_stop="10661" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10660" e_stop="10543" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10542" i_stop="10382" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10381" e_stop="10283" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10987" stop="10746"/>
              <exon start="10660" stop="10543"/>
              <exon start="10381" stop="10283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265216" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAGGTATTCAAGATGTTTAATAACCACCAGCACTTGCTCGATATATCGTCCTCAGCTCAACGAACACCTGATAACGAGTTGGATTTCATTCGTGATGAAGAGTTTGATAGCAACTCTGGTGCTGATAACATGGAAGCTCCCAATTCAGGTGATGACGATCAAGCTGATCCAAACCAACCTCCAAACAAGAAGAAGCGTTATCATCGCCACACTCAGAATCAGATTCAGGAAATGGAGTC : CTTTTACAAGGAATGCAATCATCCAGATGACAAGCAAAGGAAGGAATTGGGAAGAAGACTTGGTTTGGAGCCATTACAAGTGAAATTTTGGTTCCAGAACAAGCGTACTCAGATGAAG : GCTCAACATGAGCGATGTGAGAACACACAGTTGAGGAATGAAAATGAGAAGCTTCGCGCTGAGAACATAAGGTACAAAGAAGCTTTGAGTAATGCAGCA</gDNA_template>
            <first_frame> E  K  V  F  K  M  F  N  N  H  Q  H  L  L  D  I  S  S  S  A  Q  R  T  P  D  N  E  L  D  F  I  R  D  E  E  F  D  S  N  S  G  A  D  N  M  E  A  P  N  S  G  D  D  D  Q  A  D  P  N  Q  P  P  N  K  K  K  R  Y  H  R  H  T  Q  N  Q  I  Q  E  M  E  S :   F  Y  K  E  C  N  H  P  D  D  K  Q  R  K  E  L  G  R  R  L  G  L  E  P  L  Q  V  K  F  W  F  Q  N  K  R  T  Q  M  K  :  A  Q  H  E  R  C  E  N  T  Q  L  R  N  E  N  E  K  L  R  A  E  N  I  R  Y  K  E  A  L  S  N  A  A </first_frame>
            <second_frame>  R  R  Y  S  R  C  L  I  T  T  S  T  C  S  I  Y  R  P  Q  L  N  E  H  L  I  T  S  W  I  S  F  V  M  K  S  L  I  A  T  L  V  L  I  T  W  K  L  P  I  Q  V  M  T  I  K  L  I  Q  T  N  L  Q  T  R  R  S  V  I  I  A  T  L  R  I  R  F  R  K  W  S   : P  F  T  R  N  A  I  I  Q  M  T  S  K  G  R  N  W  E  E  D  L  V  W  S  H  Y  K  *  N  F  G  S  R  T  S  V  L  R  *  R :   L  N  M  S  D  V  R  T  H  S  *  G  M  K  M  R  S  F  A  L  R  T  *  G  T  K  K  L  *  V  M  Q   </second_frame>
            <third_frame>   E  G  I  Q  D  V  *  *  P  P  A  L  A  R  Y  I  V  L  S  S  T  N  T  *  *  R  V  G  F  H  S  *  *  R  V  *  *  Q  L  W  C  *  *  H  G  S  S  Q  F  R  *  *  R  S  S  *  S  K  P  T  S  K  Q  E  E  A  L  S  S  P  H  S  E  S  D  S  G  N  G  V  :  L  L  Q  G  M  Q  S  S  R  *  Q  A  K  E  G  I  G  K  K  T  W  F  G  A  I  T  S  E  I  L  V  P  E  Q  A  Y  S  D  E   : G  S  T  *  A  M  *  E  H  T  V  E  E  *  K  *  E  A  S  R  *  E  H  K  V  Q  R  S  F  E  *  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0006L05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10987" stop="10746"/>
                    <exon start="10660" stop="10543"/>
                    <exon start="10381" stop="10283"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKVFKMFNNHQHLLDISSSAQRTPDNELDFIRDEEFDSNSGADNMEAPNSGDDDQADPNQPPNKKKRYHRHTQNQIQEMESFYKECNHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMKAQHERCENTQLRNENEKLRAENIRYKEALSNAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23764" PGL_stop="22957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23764" e_stop="22957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="23764" e_stop="22957" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23764" stop="22957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0006L05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23762" stop="22959"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24423" PGL_stop="23775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24423" e_stop="23775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="24423" e_stop="23775" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24423" stop="23775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24422" stop="24038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  *  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  I  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0006L05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24422" stop="23775"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="29306" PGL_stop="28721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29306" e_stop="28721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="29306" e_stop="28721" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29306" stop="28721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414241" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAACAAAAGCGGAGGAAGGCCAAGTCGACATCCTCTCCCAGGTCTGCTTCATCATCCTCGTCAAGATCATCACGAGCAGAAAAATCCAAGACTAAATTTGTCGAAGGCAATGCTAAACCACTTAACATAGAGGTGGCTTAATGGTACAAACTTGCAGCTTAAATTGCTGAGAATTCTGTCATTGCTTAGCTATTGAAGTTGTTCATAGTCCTCATGGAAGTATCCACGAGAAAGATGAGGACGGTATAGAAAATTGAGTAGATGTAGAGAGTGTTACACTGCAAATGTGATAAAACTAATATGGAAGAAACCTAAAGAAGTAGGAGGAGGACTTAGAGATGTGAAAACACAAGGTGAAAAACTAAAAAAAAAATTCAAAACCAGGACAATGTTTTGGGAGAATTATAAATTCTTTTCCTTTATTTCTTCTATTTATTTTTCTCTTAGTTTTATCGTTCCTCTTCTTGGAACTACAACGAGGAAGGATCGTGTAAAGAGTTGAATCGTTTAGTCTATTGGTTGAAGATTGTACTAATGCTAATTATTTGATTTGAACAATCTCCAGGGATTCTCTCATACTCCTT</gDNA_template>
            <first_frame> R  N  K  S  G  G  R  P  S  R  H  P  L  P  G  L  L  H  H  P  R  Q  D  H  H  E  Q  K  N  P  R  L  N  L  S  K  A  M  L  N  H  L  T  *  R  W  L  N  G  T  N  L  Q  L  K  L  L  R  I  L  S  L  L  S  Y  *  S  C  S  *  S  S  W  K  Y  P  R  E  R  *  G  R  Y  R  K  L  S  R  C  R  E  C  Y  T  A  N  V  I  K  L  I  W  K  K  P  K  E  V  G  G  G  L  R  D  V  K  T  Q  G  E  K  L  K  K  K  F  K  T  R  T  M  F  W  E  N  Y  K  F  F  S  F  I  S  S  I  Y  F  S  L  S  F  I  V  P  L  L  G  T  T  T  R  K  D  R  V  K  S  *  I  V  *  S  I  G  *  R  L  Y  *  C  *  L  F  D  L  N  N  L  Q  G  F  S  H  T  P  </first_frame>
            <second_frame>  E  T  K  A  E  E  G  Q  V  D  I  L  S  Q  V  C  F  I  I  L  V  K  I  I  T  S  R  K  I  Q  D  *  I  C  R  R  Q  C  *  T  T  *  H  R  G  G  L  M  V  Q  T  C  S  L  N  C  *  E  F  C  H  C  L  A  I  E  V  V  H  S  P  H  G  S  I  H  E  K  D  E  D  G  I  E  N  *  V  D  V  E  S  V  T  L  Q  M  *  *  N  *  Y  G  R  N  L  K  K  *  E  E  D  L  E  M  *  K  H  K  V  K  N  *  K  K  N  S  K  P  G  Q  C  F  G  R  I  I  N  S  F  P  L  F  L  L  F  I  F  L  L  V  L  S  F  L  F  L  E  L  Q  R  G  R  I  V  *  R  V  E  S  F  S  L  L  V  E  D  C  T  N  A  N  Y  L  I  *  T  I  S  R  D  S  L  I  L  L </second_frame>
            <third_frame>   K  Q  K  R  R  K  A  K  S  T  S  S  P  R  S  A  S  S  S  S  S  R  S  S  R  A  E  K  S  K  T  K  F  V  E  G  N  A  K  P  L  N  I  E  V  A  *  W  Y  K  L  A  A  *  I  A  E  N  S  V  I  A  *  L  L  K  L  F  I  V  L  M  E  V  S  T  R  K  M  R  T  V  *  K  I  E  *  M  *  R  V  L  H  C  K  C  D  K  T  N  M  E  E  T  *  R  S  R  R  R  T  *  R  C  E  N  T  R  *  K  T  K  K  K  I  Q  N  Q  D  N  V  L  G  E  L  *  I  L  F  L  Y  F  F  Y  L  F  F  S  *  F  Y  R  S  S  S  W  N  Y  N  E  E  G  S  C  K  E  L  N  R  L  V  Y  W  L  K  I  V  L  M  L  I  I  *  F  E  Q  S  P  G  I  L  S  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0006L05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29066" stop="28803"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRYRKLSRCRECYTANVIKLIWKKPKEVGGGLRDVKTQGEKLKKKFKTRTMFWENYKFFSFISSIYFSLSFIVPLLGTTTRKDRVKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31668" PGL_stop="31256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31668" e_stop="31397"/>
            <exon e_start="31272" e_stop="31256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.980" e_score="0.974"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="31668" e_stop="31397" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.980">
            <gDNA_intron_boundary i_start="31396" i_stop="31273" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31272" e_stop="31256" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31668" stop="31397"/>
              <exon start="31272" stop="31256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280219" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGTCGTCCACCTCTAACTTTCTCTCTTCTCCTAATTCTTCTTCAACTCTCTATTTTTGTACCATTTCCCATTTTTCTCTTTCTTTCCATTTTTCATTTCTCACATTTTCCCACTTTGGCCTCTTTTCTTGATTTCAAACTTTTTTTTTTTTTGCATGGTTATTACATTTTTATTATGTCTAGATTACTTGAAGAAAGATGATGGGCAATGCAGCAGTAAGTTGAGGAAAAGTAGTAACCCTTTCATTTCTATCAGATTTTATCAAGAAAG : GCGAAGGAATTGGTTCT</gDNA_template>
            <first_frame> V  V  V  H  L  *  L  S  L  F  S  *  F  F  F  N  S  L  F  L  Y  H  F  P  F  F  S  F  F  P  F  F  I  S  H  I  F  P  L  W  P  L  F  L  I  S  N  F  F  F  F  C  M  V  I  T  F  L  L  C  L  D  Y  L  K  K  D  D  G  Q  C  S  S  K  L  R  K  S  S  N  P  F  I  S  I  R  F  Y  Q  E  R :   R  R  N  W  F  </first_frame>
            <second_frame>  W  S  S  T  S  N  F  L  S  S  P  N  S  S  S  T  L  Y  F  C  T  I  S  H  F  S  L  S  F  H  F  S  F  L  T  F  S  H  F  G  L  F  S  *  F  Q  T  F  F  F  F  A  W  L  L  H  F  Y  Y  V  *  I  T  *  R  K  M  M  G  N  A  A  V  S  *  G  K  V  V  T  L  S  F  L  S  D  F  I  K  K   : G  E  G  I  G  S </second_frame>
            <third_frame>   G  R  P  P  L  T  F  S  L  L  L  I  L  L  Q  L  S  I  F  V  P  F  P  I  F  L  F  L  S  I  F  H  F  S  H  F  P  T  L  A  S  F  L  D  F  K  L  F  F  F  L  H  G  Y  Y  I  F  I  M  S  R  L  L  E  E  R  *  W  A  M  Q  Q  *  V  E  E  K  *  *  P  F  H  F  Y  Q  I  L  S  R  K  :  A  K  E  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0006L05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31632" stop="31397"/>
                    <exon start="31272" stop="31257"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFNSLFLYHFPFFSFFPFFISHIFPLWPLFLISNFFFFCMVITFLLCLDYLKKDDGQCSSKLRKSSNPFISIRFYQERRRNWF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0006L05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31666" stop="31466"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRPPLTFSLLLILLQLSIFVPFPIFLFLSIFHFSHFPTLASFLDFKLFFFLHGYYIFIMSRLLEER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 18 chains have been computed
$ 
$ memory statistics:
$ 14488 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2069 bytes was the average size of a spliced alignment
$ 11600 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1933 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 22 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:49:11
-->
