<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:50:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573336" ref_strand="+" ref_description="SGN-U573336 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|148595726|emb|CAM12542.1| (e_value=1e-83) YA4; (*ATH) AT5G12840.2 (e_value=1e-45) | Symbol: None | CCAAT-binding transcription factor (CBF-B/NF-YA) family protein, contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | chr5:4050694-4053557 REVERSE | Aliases: None; (*SWP) sp|Q9LXV5|NFYA1_ARATH (e_value=6e-44) Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1; ">
      <seq>tctactctctcttctgcctcttccctttcacctgaacattgtacgaagaactaaacttactagaactagagaagcatgcaatcagagtccaaaagtgcaaattgtggggaaaccagaacttataatgttccgaattccactttagaaccttggtggaatactgctggtaataatcctgtttctcttggactgatgcggggaagtccatcagattcaccatcacccgaacaagctgtggatggccgatcacagtctgatggtggatccaacgaggaagctgatgatactcctgaaaaatcacaaagtaccatacctaagcattcagagttagatgggagttatgtgcaagtagatcagaatttacagccaatggcatctgccatacctccaaagggtgatgggtgcataacacaacccccacagtttgaacttgttgcgcactccatggcatgtgctccaaatctgtatgttgacccatactatggtggaatactggcaccttttggtcagcctatggtccctcctcatgtacttgatatgcatcatccgaggatgcctttgcctcatgaaatggctcaagagcctgtttatgtcaatgccaagcagtatcatggtattctgcggcgaagagagtcacgtgcgaaagcagaacttgaaaagaagctgataaaagtgagaaagccatatcttcacgagtcgagacatcagcatgccttgaaaagggcaagagcttctggagggcgttttgcaaaaaagtcagatgctggtacttcaaagggagatggttctggttctgctgttcctttgcagtctgtgcattcatcaggttctgaacctttactgtccaatgctgctgatgatccagagtggcacaaggatagaagtttggctgagcatcagaactcttactcgaatggtaatggttatggaaaacaaatcagctttcaggaatcgaaatatcaggctcagtctgctcaggtaggggaaggaggttcttccggccagcgatggtagaaacatcacataacacacctttagtacctctggtccaagcctgatggcaattcatccttggctttttatttcaatgttatggaaaagaggggtcatgcgcctagtagattcgattcttcctttctgtacataaaaaaaggactaggactagagttgaaaaagaagaattcagtgagcatatggctagctgtttagtctaaactgtaaagttataggtatgaaaagttgtaggtagatcatatacttgtcaaacatttcctttgtactgctgtattttaggatcttgattctgtgaaactacagagatttgtcgtttaattcgatgacagtggttgtaatgtcctatttcttgtgaatttgttgatccaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="4431" stop="10167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4731" g_stop="4764" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4765" i_stop="6411" i_length="1647">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6412" g_stop="6702" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="325" r_length="291" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6703" i_stop="7407" i_length="705">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7408" g_stop="7529" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="447" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7530" i_stop="7635" i_length="106">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7636" g_stop="7704" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="516" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7705" i_stop="8467" i_length="763">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.175" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8468" g_stop="8632" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="681" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8633" i_stop="9164" i_length="532">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9165" g_stop="9867" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="1387" r_length="706" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-U573336" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1384</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4731" e_stop="4764"/>
          <exon e_start="6412" e_stop="6702"/>
          <exon e_start="7408" e_stop="7529"/>
          <exon e_start="7636" e_stop="7704"/>
          <exon e_start="8468" e_stop="8632"/>
          <exon e_start="9165" e_stop="9867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACTCTCTCTTCTGCCTCTTCCCTTTCACCTGGTAAGTTTTTTTCTTCTTTCAATTCTCAATTTTCAGCTCCTTCATGTACAATTATCTGTGTTTTTGGATTATGGGGTTTTCAGTTTTTTTTTTTTTTTTGAAATTGATCAATTCTGTGAATTTTTAGTCCAATTCTTGATTGTTCAATGGATTAACAATCTGGAGATACCCTTTTCTCTGTTTGGGATGGTGAACACACCATCTTCATTGGAAAATTAAAATATTGGTTGATTTGGTGTAGTTTTGATTTCGAAAGTTGATGTGAATCCTGATGTTTATGTTAATTGTATGGAATGAGATTCGTTTTTTTTTTTTGGTAATTATTTGGTGGGTTGATTTTATGAGTAAAGATGTTTTTTTGAGCGGTGTGGTGGGTTGAGGTGTTTCTTTTTATTGGAATTACTGTGAATTCAGAGGGAAAATGTCACTTCTTAAGTTTTTTTTTTAATGGGGATGGATTGAAGTCTGATAAGTTTTCCCCTAATTTTAGTAATAGGGGCATATGGTTTGTACTGTGGACTGGAGTATATCTTTAAAGTTCCTTTTTTTTGTGGTGGTGGCAGGGGTGGAGTTAGGGTAAGGTATCACAAGGGTCGAAAGATTACACTACATATACAAAATCAAAATTATTTTTTTGTGTATATGTGTAGGTGTTGTTGAGCCCTTTTTGCTTCTTCGTATGTTTTACTTCTTTACATTTTGAATCCCGTTAGTCATTGTCCTGGTTCTACGTTAGTCATAATCCTGTTTCGTCACTGAATGGTGGTGGTGTAGTGGATGATGGGGGTATGCATTTAAGTTGCTATAGCTTTTAGGTCTTGAGGCACAAGATATGAGGTAAACAGTGGAAAAGAAATCATAGAAAATGGGAAAAAGTGATTTTATACTTTGAATTTATCCTTCCTAGTTTTTTTAAAGGTCTTGGGGGAACTAGATATGAGGAAAACAGTTGCAGAAATGGGGGAAAATGGTTCTATACTTTGAGTCTATCCTTCCTAGCTCTGTTTTGTTTTTCATATATAGTTTATCTTTGGTGTAAATCTAGTTAAAAAGTAAAACTGTCTTCTTGCATGTACTATAACTTGTTTATGGAGTAAGGAAACTCCAGTATAATGACATATCTATGAAGTGTTATAATGTTACTAAAAGAGATTACTTCGTCCCTTAAAGCTAAGCGATGAGATGATAAGTTATCACTTCATAGGTGAAGCAATGTAGTATAGAGAAGTTTGTGCTTCAAAAAAGCAGAGGACAAAGTGATAACAATGAGAAAAATCTCAACTTTGAGAAGTTAGTTTTATATAGGCATTATGTGTATTTGATGCTGAAATCAGTTATTTTAATTGCAAGTTGTACTAAATTCATAGACGGTTGATTTCTGGCTTTCTTGTTCTTCACGATTAGAAATGAAAGGTTCAGAACAATTGCCTTTGGAAAAAGGAATTAAAAAAAGACACAAACATGTTGTTCAAGTCGAAGTAAATGTTATGATTGTTAAATATTAGTCTTGTTCATCTCATGCATCCTCATTAAAGTTTCAGATCCTTTTGGTAGGATATGAAACCTTATAGCAATGTGCTTCTGGAATAATTGTAGATTCCTTAAACTTGATTAACTGAGTTGCTTTGCTTTCTGTCTATCTGCCAGAACATTGTACGAAGAACTAAACTTACTAGAACTAGAGAAGCATGCAATCAGAGTCCAAAAGTGCAAATTGTGGGGAAGCCAGAACTTATAATGTTCCTAATTCCACTTTAGAACCTTGGTGGAATACTGCTGGTAATAATCCTGTTTCTCTTGGACTGATGCGGGGAAGTCCATCAGATTCACCATCACCCGAACAAGCTGTGGATGGCCTATCACAGTCTGATGGTGGATCCAACGAGGAAGCTGATGATACTCCTGAAAAATCACAAAGTACCATACCTAAGCATTCAGGTATCTCTACTATTTTTTTTTCCTAGTAAATAAATTTTATTGATAGCTAAATATAGTCAAGCTGTACGCTAGTGCTGAACTTTAAAAAGTGAGAGGCCCTCCTGTACAAAAACAACAAGGGGAGACTCCCCTATACAAAGTTACTCCTGTAGTGAGCTATAAAGTCAGTCAGGCGTATTTCATCAAATGTATCCTGTAAATTGCATGAAACTGCCAGTAGGCCTAAATACCTATATTTGAGGGTAGTTATTCTTTCCACCAAAACACCATGCGTTCCTCTATTCAATCTAAAGAGGTGCTAAAGATAAAGCAGTATGGTCATTGACAGAGTGATTTGACCTGTTTTTCTTCATTAGTCTCTTTCTGACAAGTACTCTACTTCTTTTTTCAACTAATAATATATGAATATTTGTTACGGTTGTGTTGAATAATATTGGTTTGGAAGGAGCAATATGATCAGTGAGGATTCATATAACCAATCCTGATTTGCTTGAGCTTGAGGCATAGTTGTTATGGACTGGAATTCTGTCATGATGCTTCATTTGCCTAGTTACTTTCTTCTTTTAAATCTTTTCCATAAAGAGGAAAGAAGGTGACATATTATTGACGCGGGAAGTGCTGTGGTAGAGATGGGAAACAATATATATCTTTTATGATGTTAATGGCTATAAATTACTTAAGTAATGCTCTGCATTCTTGGTTCAGAGTTAGATGGGAGTTATGTGCAAGTAGATCAGAATTTACAGCCAATGGCATCTGCCATACCTCCAAAGGGTGATGGGTGCATAACACAACCCCCACAGTTTGAACTTGTTGCGCACTCCATGGTGAGTATGTTTGACTCTATGGGTTTTGAGAAGTTTGATTTGCTTGTTGGGTTATCTCACTTTTTTTCCTTTCTGATTTTGATGTTATTCTGTAATTGGCATGCAGGCATGTGCTCCAAATCTGTATGTTGACCCATACTATGGTGGAATACTGGCACCTTTTGGTCAGCCTATGGTATGCGTGTGGTTTGAATTCATAACTTTCATTTTTCCTGTTTTTCCCCCATCACTTTTTTTAAGATCTGATGTGTTGAGAGGAAAATTTTACTTTTCTGCCAATTTATACTATTGAATACCTCTGGAACTGAGTGTATTATGTCGTTAGGGATATCTAAACATAGAAAGCTGCTTCATGGTGGTTGTTTGATATATCTTTGGCAGGTGGTTAAACGTAGTCTTTGTATGTGTTGGCTTAACCCTGATATCTTCTTGTAGTTAGCTTTAGTTTAGAGACACTCACTTTCTCTGTATTGCCAACTTCCAGGTGACTTGCTAATTATCCTTCTTGCAATCATACATGTTACAACATTATTGTTCAATTTGGGATGAGTTCTTTCTTCTTTCAATTGAATTAGAATCAGTGGCGTCCAGTGCGCATGTCCCTTTCATTTAAATCATTGATTAGATTTCATAGGACAGCTAGTATAAATAGTACTCCGGATGCAGCTTCTTTTGTTTGTCTTTTAAATGAGCTCTTTTCTGTTTTTTCTATTTCGACTAACAAATAGATACAATCAGTTCCAGAAAGATCTCTTTGCTTGATATGCCTAGGACTCTAGGAAGTAGGAAACCACCTTGAAAAACATCGCCACTGAAGAAAAATCCATCATTAAAAAAAATACAAAAAAAAATTCCATTATAACATAGTTATGCCTGGGGCTGGTTGGTGGCTGAGCACAAGATTTTTTAAGATCTTGACTGAAGGTGGTGCTATACAGGTCCCTCCTCATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGCCTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCTGTCTTCCTCGTAATACAGCCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTCCAGAGTGGCACAAGGATAGAAGTTTGGCTGAGCATCAGAATTCTTACTCGAATGGTAATGGTTATGGAAAACAAATCAGCTTTCAGGAATCGAAATATCAGGCTCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATAACAC-CTTTTAGTACCTCTGGTCCAAGCCTGGTGGCAATTCATCCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGACTAGGACTAGAGTTGAAAAAGAAGAATTCAGTGAGCATATGGCTAGCTGTTTAGTCTAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATCATATACTTGTCAAACATTTCCTTTGTATTGCTGTATTTTAGGATCTTGATTCTGTGAAACTTC-GA-ATTTGTTGTTTAATTCGATGACAGTGGTTGTAATGTCCTATTTCTTGTGAATTTGTTGATCCAAGTAC</genome_strand>
        <mrna_strand>TCTACTCTCTCTTCTGCCTCTTCCCTTTCACCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATTGTACGAAGAACTAAACTTACTAGAACTAGAGAAGCATGCAATCAGAGTCCAAAAGTGCAAATTGTGGGGAAACCAGAACTTATAATGTTCCGAATTCCACTTTAGAACCTTGGTGGAATACTGCTGGTAATAATCCTGTTTCTCTTGGACTGATGCGGGGAAGTCCATCAGATTCACCATCACCCGAACAAGCTGTGGATGGCCGATCACAGTCTGATGGTGGATCCAACGAGGAAGCTGATGATACTCCTGAAAAATCACAAAGTACCATACCTAAGCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAGATGGGAGTTATGTGCAAGTAGATCAGAATTTACAGCCAATGGCATCTGCCATACCTCCAAAGGGTGATGGGTGCATAACACAACCCCCACAGTTTGAACTTGTTGCGCACTCCATG..........................................................................................................GCATGTGCTCCAAATCTGTATGTTGACCCATACTATGGTGGAATACTGGCACCTTTTGGTCAGCCTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTCCTCATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTCTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGATCCAGAGTGGCACAAGGATAGAAGTTTGGCTGAGCATCAGAACTCTTACTCGAATGGTAATGGTTATGGAAAACAAATCAGCTTTCAGGAATCGAAATATCAGGCTCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATAACACACCTTTAGTACCTCTGGTCCAAGCCTGATGGCAATTCATCCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGACTAGGACTAGAGTTGAAAAAGAAGAATTCAGTGAGCATATGGCTAGCTGTTTAGTCTAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATCATATACTTGTCAAACATTTCCTTTGTACTGCTGTATTTTAGGATCTTGATTCTGTGAAACTACAGAGATTTGTCGTTTAATTCGATGACAGTGGTTGTAATGTCCTATTTCTTGTGAATTTGTTGATCCAAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604836" ref_strand="+" ref_description="SGN-U604836 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tattatgtcgttagggatatctaaacatagaaagctgcttcatggtggttgtttgatatatctttggcaggtggttaaacgtagtctttgtatgtgttggcttaaccctgatatcttcttgtagttagctttagtttagagacactcactttctctgtattgccaacttccaggtgacttgctaattatccttcttgcaatcatacatgttacaacattattgttcaatttgggatgagttctttcttctttcaattgaattagaatcagtggcgtccagtgcgcatgtccctttcatttaaatcattgattagatttcataggacagctagtataaatagtactccggatgcagcttcttttgtttgtcttttaaatgagctcttttctgttttttctatttcgactaacaaatagatacaatcagttccagaaagatctctttgcttgatatgcctaggactctaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="7541" stop="8612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7841" g_stop="8312" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-U604836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7841" e_stop="8312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATGTCGTTAGGGATATCTAAACATAGAAAGCTGCTTCATGGTGGTTGTTTGATATATCTTTGGCAGGTGGTTAAACGTAGTCTTTGTATGTGTTGGCTTAACCCTGATATCTTCTTGTAGTTAGCTTTAGTTTAGAGACACTCACTTTCTCTGTATTGCCAACTTCCAGGTGACTTGCTAATTATCCTTCTTGCAATCATACATGTTACAACATTATTGTTCAATTTGGGATGAGTTCTTTCTTCTTTCAATTGAATTAGAATCAGTGGCGTCCAGTGCGCATGTCCCTTTCATTTAAATCATTGATTAGATTTCATAGGACAGCTAGTATAAATAGTACTCCGGATGCAGCTTCTTTTGTTTGTCTTTTAAATGAGCTCTTTTCTGTTTTTTCTATTTCGACTAACAAATAGATACAATCAGTTCCAGAAAGATCTCTTTGCTTGATATGCCTAGGACTCTAGGAAG</genome_strand>
        <mrna_strand>TATTATGTCGTTAGGGATATCTAAACATAGAAAGCTGCTTCATGGTGGTTGTTTGATATATCTTTGGCAGGTGGTTAAACGTAGTCTTTGTATGTGTTGGCTTAACCCTGATATCTTCTTGTAGTTAGCTTTAGTTTAGAGACACTCACTTTCTCTGTATTGCCAACTTCCAGGTGACTTGCTAATTATCCTTCTTGCAATCATACATGTTACAACATTATTGTTCAATTTGGGATGAGTTCTTTCTTCTTTCAATTGAATTAGAATCAGTGGCGTCCAGTGCGCATGTCCCTTTCATTTAAATCATTGATTAGATTTCATAGGACAGCTAGTATAAATAGTACTCCGGATGCAGCTTCTTTTGTTTGTCTTTTAAATGAGCTCTTTTCTGTTTTTTCTATTTCGACTAACAAATAGATACAATCAGTTCCAGAAAGATCTCTTTGCTTGATATGCCTAGGACTCTAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573337" ref_strand="+" ref_description="SGN-U573337 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|148595736|emb|CAM32009.1| (e_value=2e-16) YA4; (*ATH) AT3G20910.1 (e_value=5e-15) | Symbol: None | CCAAT-binding transcription factor (CBF-B/NF-YA) family protein, contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | chr3:7326401-7328580 FORWARD | Aliases: MFD22.7; (*SWP) sp|Q945M9|NFYA9_ARATH (e_value=4e-14) Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9; ">
      <seq>gcatcatccgaggatgcctttgcctcaggaaatggctcaagagcctgtttatgtcaatgccaagcagtatcatggtattttgcggcgaagagagtcacgtgcgaaagcagaacttgaaaagaagctgataaaagtgagaaaggttagtatatgcctcatccactgggctgcttgttgggtgttcttttctcctgttatctaaagaatgcatgatgcacctttttagcagcatatttttgttacatgtgactggctgttctggagatattccgttgtcccggattggagatgtacccactctttggctgagctcacttttctttaaaaaaaattaaactgttaaagaattttatgttacttaagtaggaggaaatgaaaggtaaaatctgatattacttttatctgtgtagaacacggtcaattcacctttttaaactgatccgtcaaatacaccactcataagtataatttggtgaaaggagttccttatgccaatgtttgggctattaataaccaatatcagtttctccactgctatatttttattgtgaagtcacaggattggctgacatgattttgcacgaatgttatgctgatgatatgcaacatatgctcggtttattctgcttactcatcctcagttgttgatactttctgtcttcctcgtaatacagccatatcttcacgagtcgagacatcagcatgccttgaanagggcaagagcttctggagggcgttttgcaaaaaagtcagatgctggtacttcaaagggagatggttctggttctgctgttcctttgcagtctgtgcattcatcangttctgaacctttactgtccaatgctgctgatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="8191" stop="9645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8491" g_stop="9345" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-U573337" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8491" e_stop="9345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGCCTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCTGTCTTCCTCGTAATACAGCCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTC</genome_strand>
        <mrna_strand>GCATCATCCGAGGATGCCTTTGCCTCAGGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGACTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCTGTCTTCCTCGTAATACAGCCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAANAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCANGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598895" ref_strand="+" ref_description="SGN-U598895 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157355873|emb|CAO49730.1| (e_value=1e-63) unnamed; (*ATH) AT5G38280.1 (e_value=2e-38) | Symbol: None | serine/threonine protein kinase (PR5K), identical to receptor serine/threonine kinase PR5K gi:1235680:gb:AAC49208 | chr5:15310351-15314553 REVERSE | Aliases: MXA21.170, MXA21_170; (*SWP) sp|Q9XEC7|CRK37_ARATH (e_value=1e-26) Cysteine-rich receptor-like protein kinase 37 OS=Arabidopsis thaliana GN=CRK37; ">
      <seq>agggtatagcattgtggcaagagtcattctatttccatgcatagttgtatttctaatgattgagttacgaagaaggcatttgtcgatttatgatgcaattgaaagtttcctgctcggtgagaacaatttcacgcccattagatattccaactccaacataagaaagatgactagaaactttaaagagaaactaggccagggaggttatggttcagtatataaaggcaagcttcaaagtggtcctaatgtagcagtgaagatcttgagcaagcccaaagccgatggacaagactttatcaacgaggttgctacaatcgggaggattcatcatgttaacatagtgcaacttattggctattgtgctgagagatgtaagcgtgctctcgtatatgacttcatgcctaaaggatcacttgaaaagtacatcacacctcgaggaggagctgaattattaagttggaaaagaaagtttgaaattgctcttggagttgctcgaggtattgaatacttgcatcgaggttgtgacattcagattctacattttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="35525" stop="36676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35825" g_stop="36376" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-U598895" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35825" e_stop="36376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTAGCATTGTGGCAAGAGTCATTCTATTTCCATGCATAGTTGTATTTCTAATGATAGAGTTACGAAGAAGGCATTTGTCGATTTATGATGCAATTGAAAGTTTCCTGCACGGTGAGAACAATTTCACGCCCATTAGATATTCCAACTCCAACATAAGAAAGATGACTAGAAACTTTAAAGAGAAACTAGGCCAAGGAGGTTATGGTTCAGTATATAAAGGCAAGCTTCAAAGTGGTCCTAATGTAGCAGTGAAGATCTTGAGCAAGCCCAAAGCCGATGGACAAGACTTCATCAACGAGGTTGCTACAATCGGGAGGATTCATCATGTTAACATAGTACAACTTATTGGCTATTGTGCTGAGAGATGTAAGCGTGCTCTCGTATATGACTTCATGCCTAAAGGATCACTTGAAAAGTACATCACACCTCGAGAAGGAGGAGCTGAACTATTAAGTTGGAAAAGAAAGTTTGAAATTGCTCTTGGAGTTGCTCGAGGTATTGAATACTTGCATCGAGGTTGTGACATTCAGATTCTACATTTTGACAT</genome_strand>
        <mrna_strand>AGGGTATAGCATTGTGGCAAGAGTCATTCTATTTCCATGCATAGTTGTATTTCTAATGATTGAGTTACGAAGAAGGCATTTGTCGATTTATGATGCAATTGAAAGTTTCCTGCTCGGTGAGAACAATTTCACGCCCATTAGATATTCCAACTCCAACATAAGAAAGATGACTAGAAACTTTAAAGAGAAACTAGGCCAGGGAGGTTATGGTTCAGTATATAAAGGCAAGCTTCAAAGTGGTCCTAATGTAGCAGTGAAGATCTTGAGCAAGCCCAAAGCCGATGGACAAGACTTTATCAACGAGGTTGCTACAATCGGGAGGATTCATCATGTTAACATAGTGCAACTTATTGGCTATTGTGCTGAGAGATGTAAGCGTGCTCTCGTATATGACTTCATGCCTAAAGGATCACTTGAAAAGTACATCACACCTC--G-AGGAGGAGCTGAATTATTAAGTTGGAAAAGAAAGTTTGAAATTGCTCTTGGAGTTGCTCGAGGTATTGAATACTTGCATCGAGGTTGTGACATTCAGATTCTACATTTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583329" ref_strand="+" ref_description="SGN-U583329 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gctgcaggaaaaaatagtcacaaaactaacaccaatggcttctttactaatgtcatcttcattactagcccatatcgaaggatctaactacaggagaaccaggaacgaagggttttcctccctctccgcgcattcaaataggagaagagtgctaaaagttaatgcatttactaaggatgaaaaaattgtgaaaaaaaaggaggaaaaaaagagcattggatcaagaagggaatgggctttagccataatggctatagtagctacaagttcatttgcaagtgttgttatggctgaggaaccaaaggcagggacacttgaggcaaagaaaaagtatgcacctatttgtgtcacaatgccaactgctagaatatgtcacaagtaaaatttagacgcggaatcgggatttaagtttaataggtcgtaacttttaagatttttaattattagtgaagttgttgtaatgttaaaattataggttcaggtctaatatagtctgtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="40913" stop="42005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41204" g_stop="41705" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-U583329" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41204" e_stop="41705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTCCAAAAAAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTG</genome_strand>
        <mrna_strand>GCTGCAGGAAA-AAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577648" ref_strand="+" ref_description="SGN-U577648 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|148888525|gb|ABR15768.1| (e_value=2e-12) phenylacetaldehyde; ">
      <seq>aattagatattgagcctgaaaatggtggattcaacacaaatcttcaaatatcaataaatccatttggttttctcctacaaaccaaactcaacaaaacacaacaatagtgttctaatttcttctatcaaaccagtctgtaaaaatctctagatatagaacaaatttcaacctcatctgatcgaaatttattaacggatataccattcgacttctcgattctataattagctaaaagaagtaaaaaaaaaaagtgtgtagggtagggtggggtgggtaggaattgttcaacaaaaccataaaagctttgagaagccttttacatagaagatgaacctccaaaaaacttcttttccttcaaactttcaacagtttctttgatgctttcttcaagggtagtaaacttaatacccaagctttttgccttctcctttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="53289" stop="54323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53589" g_stop="54023" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-U577648" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53589" e_stop="54023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGATATTGAGCCTGAAAATTTTGGATTCAACACAAATCTTCAAATATCAATAAATCCATTTGGTTTTCTCCTACAAACCAAACTCAACAAAACACAACAATAGTGTTCTAATTTCTTCTATCAAACCAGTCTGTAAAAATCTCTAGATATAGAACAAATTTCAACCTCATCTGATCGAAATTTATTAACGGATATACCATTCGACTTCTCGATTCTATAATTAGCTAAAAGAAGTAAAAAAAAAAAGTGTGTAGGGTAGGGTGGGGTGGGTA-GTATTGTTCAACAAAACCATAAAAGCTTTGAGAAGCCTTTTACATAGAAGATGAACCTCCAAAAAACTTCTTTTCCTTCAAACTTTCAACAGTTTCTTTGATGCTTTCTTCAAGGGTAGTAAACTCAATACCCAAGCTTTTTGCCTTCTCCTTTGATAC</genome_strand>
        <mrna_strand>AATTAGATATTGAGCCTGAAAATGGTGGATTCAACACAAATCTTCAAATATCAATAAATCCATTTGGTTTTCTCCTACAAACCAAACTCAACAAAACACAACAATAGTGTTCTAATTTCTTCTATCAAACCAGTCTGTAAAAATCTCTAGATATAGAACAAATTTCAACCTCATCTGATCGAAATTTATTAACGGATATACCATTCGACTTCTCGATTCTATAATTAGCTAAAAGAAGTAAAAAAAAAAAGTGTGTAGGGTAGGGTGGGGTGGGTAGGAATTGTTCAACAAAACCATAAAAGCTTTGAGAAGCCTTTTACATAGAAGATGAACCTCCAAAAAACTTCTTTTCCTTCAAACTTTCAACAGTTTCTTTGATGCTTTCTTCAAGGGTAGTAAACTTAATACCCAAGCTTTTTGCCTTCTCCTTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580655" ref_strand="+" ref_description="SGN-U580655 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|148888525|gb|ABR15768.1| (e_value=3e-170) phenylacetaldehyde; (*ATH) AT1G51410.1 (e_value=1e-131) | Symbol: None | similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase | chr1:19063553-19065092 FORWARD | Aliases: F5D21.12, F5D21_12; (*SWP) sp|P51104|DFRA_DIACA (e_value=4e-60) Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A; ">
      <seq>atgagtgtgacagcgaaaacagtgtgtgtaacaggagcttcaggttacatagcttcatggctagtcaaattcttgctacatagtggttacaatgtgaaggcttctgttcgtgatccaaatgatcccaagaaaacgcagcacttgctttctcttggtggggccaaggagaggcttcacttgttcaaagcaaacctattagaagaaggttcatttgatgctgtagttgatggatgtgaaggtgtattccatacagcgtctcctttttactactctgttacagacccacaggctgaattacttgatcctgctgttaagggaacactcaatcttctcgggtcatgtgccaaagcaccatcagtaaaacgagttgttttaacgtcttccatagctgcagttgcttacagtggtcagcctcggacacctgaggttgtggttgatgagagctggtggaccagtccagactactgcaaagaaaaacagctctggtatgtcctctcaaagacattggctgaggatgctgcgtggaagtttgtgaaggagaaaggcattgatatggttgtagtaaaccctgctatggttattggtcctctgttacagcctacacttaataccagttctgctgcagtcttgagcttggtaaatggtgctgagacatacccaaattcctcttttgggtgggttaacgtgaaagatgttgcaaatgcacatattcttgcatttgagaacccttcagctaatgggagatacttaatggttgagagggttgcacactattctgatatattgaagatattgcgtgacctttatcctactatgcaacttccagaaaagtgtgctgatgacaacccattgatgcaaaattatcaagtatcaaaggagaaggcaaaaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="60088" stop="53697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="59671" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59670" i_stop="58225" i_length="1446">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58224" g_stop="58055" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="288" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58054" i_stop="57019" i_length="1036">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57018" g_stop="56827" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="480" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56826" i_stop="56042" i_length="785">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56041" g_stop="55879" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="643" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55878" i_stop="55124" i_length="755">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55123" g_stop="54937" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="830" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54936" i_stop="54061" i_length="876">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54060" g_stop="53997" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="831" r_stop="894" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-U580655" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="59671"/>
          <exon e_start="58224" e_stop="58055"/>
          <exon e_start="57018" e_stop="56827"/>
          <exon e_start="56041" e_stop="55879"/>
          <exon e_start="55123" e_stop="54937"/>
          <exon e_start="54060" e_stop="53997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTGTGACAGCGAAAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATAGTGGTTACAATGTGAAGGCTTCTGTTCGTGATCCAAGTTTGTACCTTTTTTTTCTCTTTTTATTTTAGGAAAATGTGGGTTTTTTGTGGGTTATTTGGGGTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTGATTTTCTTTTGTGGGTATTGATTCTTGGATTTGGATTTTGAAAAAAAAAGGTGTTTTGTGTGTGTCATGCAGTTCAAATACTTGGAAAATGAGTGTTTTTTTGTGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTGATTTTCTTTTGTGGGTATTGATTCTTGGATTTGAATTTTGAAAAAAAAAATGGTGTTTTTGTGTGTGTCATGTAGTTGATATACTTGGAAAATGAGTGTTTTTTTGTGGGTTATTTGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTTATTTTTTTATGTGGGTATTGATTCTTGGAAAAAAAAAGTGGTACAAAAAAATTGGTTTTTTTGTGTGTCATGATTGGTTTTTTTGTGCGTCATGTAATTGATTTGTTGTACTTTATGATGGTGTTGGGTTGTTTGGATCTTGGAATATTAGGTTATGAAGATCATATGCTTTGATTGTTTGTTGGATTATGTTGATCGTCTTATCTAAAAGCTTAAACTATTAGGGGTTTGTTTGGAATGTGGAATGGTGGTTGTGATTATGGTGGACTGATTTTGCTAGTTCACCATAATCACAACAGATTTTCAATTTGGTATATTAGTGATGTTGTGATTATGGTGAACTGCCTTTGCCATGTAAAGCCACCACTCATGTATTCATTTTCATAGGAAATGAGGAAATCCACCTGGTTGGGCAGAAAAGCAAAATCATCTGCTGAGAGTTCTCATTAAATTAGCCGAATCCCTGCACCCGTATCTGTACCTAGATTCATACCCCCGAATTTTTTTAATTTAGATTATGAAGGATGCGTCCTCTAGATTCATACACTCTTCTTTTTTTAGTTTTTTACTTTGAGACTTTATACTCAATAGATAATCTTTTGACGTCCAGTAAAAATACATCTTAGAGCAAACCAACTCGCAAGCAGTTCCATAGGTTACAGTTAATCAATTAACCACAACTCGCTCTTGAACCAAGTGATATGGTGCCTATGCAGATCCCTTTCTTCCATTATATTGTGTTCTTAGCTATGTCTGTCTTGAATCAAGGGAGATTTTAGATCTTTTGAGACAATCACATCATGTGATAGAGTGTACTTTTCTCTTTTTACCACACTTATCAAATAAATTCAGTGTAGTAAAGAAAAAAAATCATAAGGTTGATCTTGTTTCACTCATCACTGTGACTTAAACTTTCAGCTCTCCGCTTATTTTATAATTTGGACAACAGAAAAACTAGATATTTCATTCTTCGCCCGTGCTATAGGTCATGTTTACTGCTTATGTGTTGAATGCGTTATGATATTTTCGTGCAGATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAGGTTCTTTCCGTTCTTGTAAATCTGATTTTACTTACCTTCATTCTAGGTAGTGTAATGGCAGTTTCTATGTATTGATAAAAGTATTGCGGTCAGCATCTTTATTAGCTTAATATCAAGTAACTTTAGTTATCAATGACAAGTATTCAGATCAGATGACACAAGTGACAAATGAACCATCTGGTACATTAAAGGAGCTAGATGCTATGCTGATGAACCATAACATGAGTCCTGTTTCTTTGAATCAGATACTATACAATTTCCATTTACTCTGCTCCTGGTTATTTTACCATTTGCCTGGCCCGATTTGTATATCTTTCTCTTTCTTTTTGAAGTTTCATTATTCTTTCAAGTTCCTTTTGTATGCTTGGCTGTTTGGTAAATAAATCTAAGACTGTGTAATACGATTGAAAGATGTAACAGTTTAGTTTCAAGATATCCTTTCATCATTGTTACTTCTCCCCTCTTGTAAATTAAGTTAGTTACATCCTACTAGAGTGAAATTCTCAAATTAATATATTAAGTACCTAACTGAAATAGTGTGAGAAAATTTTGAATTATGTCTGTAAGATAATACTCCTTGACAGTTCACTCTCTGCTTTGGCTCAACTCTTGTTTAATGATTATAAAACTATACGGTTATGGTTGGTCGAGGAAAGTTTACAGTGAGCAGGGTTCACCTCCTTAAAGGACAAGTTGCGACAGTGGCTTGAACATCATGAGAGGATAATTAAATTATAGCATACAGCTATTGGAATTACTATTTTCTCATTTCAATGTACTTGATGTGTTATTATGAAGCTTAAGAATTTTGTAATCTTATTTTGGAGTTTGTTTTATGGACTTTAACTAGTTGATATAGTTCAAATTTGGTAGTCACATGAGATTATTCACGTTCTCTAGAAAATGAAATGTGTGGTAGCCATGTTAAAAACCAACATCCGACTTGTTTTCAATGGTACTTAAAGTAAGTTAGCTTGTTTGTCCTTCTAGAGTTGGCTCCCATTTCAAATCAACTCTACATCTCCCCATATTTCAGGCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAGGTGTGCATGTATTTTCTTCTTTCTTTTTGAGCACATTCAAAGACAAATGAAGGTATTGCCCATTGAAATAGCTAGTATTGAGCTAGTCTTACCATTATTGTATGTTTTGTTATATTCGTGGTCAATGTCTCTCTTGACAAATTACAGTGTGATACTGTTGCATAAATGTGGAGCTGGGAAGGCTAGGGATCTACAGAAGTTGTAACAAAATATACGCTGTATCTAAATTTGTGATGAATTAGACGCACTTTGATTAAAATTACTTTTATCATGGTTTTGTATTGGTATGGATGTAAGAAGGACCAGACACATTTCTCTTATTTAATAATATCAACAAGAGCTCATTAACCGCGGTTCTTGACAACATGACTAGCTGATCCAATTTAAAGAATTTCTGAGTGCTTTAGTCACTGCACTATTTCTTATTAATATCATAAGTTTCTATGTTTGCAGTTATGTCAACTTAAGTTTCTGAGGTGTTCATCCAAACACTTCTCTGGTTGGTGTAGTATTAGGAATACACATTTTTCTTGGAGATGTGTGTTTTAAAGCTAGGCAGTTTCAATAACTTTTTAAGTGTAATGAATCATCTGATCTTGGTCACTTATATCATCTGTTTTATATGTGACATTGACCTGTTATGATTGAAAGCTATGATATTAGTTGCAATGTGTCCTGTTAGTGGCCTTGTTTGTTTGCATGTTTAAATAAAGCATTCACATCCCATTGTTTCTTTCCTAGATTTCAATTGTTAACGTCTCTCTATTTTCTCCTGTTCCTTTTAGCTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGCATTGATATGGTTGTAGTAAACCCTGCTATGGTTATTGGTCCTCTGTTACAGCCTACACTTAATACCAGTTCTGCTGCAGTCTTGAGCTTGGTAAATGGTATGTTTCTTAAACTTAAATTAGTTAGATCTTTACCTCAATCTGGTGAGGTCAAATGGCTTGAAACTGTTTAAACCTAACAAATGGAATACCAAGGCCATGTGGAATGCCAAGAAGACGGATCATATATGCTGTAATATTTTCGTTTTATGGTCAACATAAGTAGAAGACTACGTAGGCCACCATAATCAGCTCTAAGGAGAAGCTCAGGCAAAAAATCCGTCTTTCTGGTCAACCTAGTTAGATTTCTCGAAATAATATTACTAATCTAGATGGATCATCCTCCTAATATGAATAAGACGAGAACATCCACTCTCTTATGGCATATAATAATGCGGTTAAATCTGAGAGTAATTCATCGAGTATACTGGCCTGTCTGTCTTTTTGTTCTAGTTGAATGTTCTCCTGTTGCTTTGGCCTGAATGTGGAAGATACGTGGGTGAGGGGCTAGACAACAGGCGGGTCTATGGTAACTATAGTATGATATGCTTATTGAGCTAGAGGTGAAGTCACTCATTAATGTTTTTCCCTTTAAGCTAGAAGAGTACTGAAGTAATTTACCTTTATAAGTTTAAATTTCAACCAAAGAATAAACTAAAACAGAACAATTGAGGTGGAGGATATAAATGATGAAAATGCATTAATAGGTCAGTGACTCATGCTTTTTCGTATGATATCGAAATTTCTTTGACCATAAGGATGTCAACCATTCTTTTCATCATCATTTCAAATGTTCATTTTTCCATGCTATGTAGGTGCTGAGACATACCCAAATTCCTCTTTTGGGTGGGTTAACGTGAAAGATGTTGCAAATGCACATATTCTTGCATTTGAGAACCCTTCAGCTAATGGGAGATACTTAATGGTTGAGAGGGTTGCACACTATTCTGATATATTGAAGATATTGCGTGACCTTTATCCTACTATGCAACTTCCAGAAAAGTAAGTATTCTTATAAAAAAAATAGGTCTATTTTTACTTGTGCTGGAACTTCTATATTAAGCTTTTATCACACAAATGTGCTATGTGGTTAGATGAATATGTTGAATGTGTGCTTATCCACTCCGAGTCATTCATAGATTGAACGCTCCTTGATTTTATGCAACTTATATCCAAGGACTTGCAAGTCACTAACTTGAACTAGAGTCTAGACAACTCCCCCATAGATTTTCTTCCCTTTCTGATGGTTGGACAAGCATTGTAACCACAAGAAAACTTTATGTATGTCCAATCCAGTGTTCTTTTAAAGGTAACGTAAAGGGTGGGGGTGAGGGGGCTTTTTGCTGCAACGCGATTTCAGATTGAGACGAGGGACTCAATGCCTTAACTTAATCAAGTGAACCTTCGTTGCCTTAACCTTATGCAATCCAATGCAGTTCTTAGAGAAAACTTAGAAGCAAGATGATAAAAATACTGAATAATTCTAAAACTGTTCTTTCGTTTATCAACTTGTAATGCCTTGTGCCATAATAAAGTCATTCTTGTTTTACAACTTGTAGAACTTTTATTTGATATCTTATCAGCCTAACTCGATATAGATAGGGAGTAATGATCGTTTGAAGTTGGTCCCTTGGTCCTAATGCATGCTCCTCATTTGAACCTTAGTTTATCGTTCAGTTTCCAACTTTACTTCGCCCTAGGACATCTCATATACTTGCTATCACGTCCAAGTGATATTGCACTAGTTTGTTATTCACCTTTGACATGAAAAAACAACATTTTATGTATTCGTTATTACATTTATCGCCTCCAAACTCAATTCTTAGGGTCCCTACATTGTTGCTTGAGCTTTTGTGAATATATATGATATATCTGTAGGTGTGCTGATGACAACCCATTGATGCAAAATTATCAAGTATCAAAGGAGAAGGCAAAAAGCTTG</genome_strand>
        <mrna_strand>ATGAGTGTGACAGCGAAAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATAGTGGTTACAATGTGAAGGCTTCTGTTCGTGATCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGCATTGATATGGTTGTAGTAAACCCTGCTATGGTTATTGGTCCTCTGTTACAGCCTACACTTAATACCAGTTCTGCTGCAGTCTTGAGCTTGGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGACATACCCAAATTCCTCTTTTGGGTGGGTTAACGTGAAAGATGTTGCAAATGCACATATTCTTGCATTTGAGAACCCTTCAGCTAATGGGAGATACTTAATGGTTGAGAGGGTTGCACACTATTCTGATATATTGAAGATATTGCGTGACCTTTATCCTACTATGCAACTTCCAGAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCTGATGACAACCCATTGATGCAAAATTATCAAGTATCAAAGGAGAAGGCAAAAAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578093" ref_strand="+" ref_description="SGN-U578093 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|148888527|gb|ABR15769.1| (e_value=3e-98) phenylacetaldehyde; (*ATH) AT1G51410.1 (e_value=8e-90) | Symbol: None | similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase | chr1:19063553-19065092 FORWARD | Aliases: F5D21.12, F5D21_12; (*SWP) sp|P51103|DFRA_CALCH (e_value=3e-46) Dihydroflavonol-4-reductase OS=Callistephus chinensis GN=F; ">
      <seq>ttctttatacaaaaaaaataaataattaaaagtattcaatattattattattattatgagtttggaaacaaaaacagtagtgtgtgtaacaggagcttctggtttcatagcttcatggctagtcaaattattgctaaatcgtggttatactgtgaaggcttctgttcgtgatccaaatgatcaagaaaagatagatcacttgacttgtcttgatggagccaaggagagacttcacttgttcaaagcaagcctgctggaacaaggttcctttgatgctgttgttgatggctgtgaaggtgtatttcatacagcatctccttgttactttgaagctaaagatccacaggcggaactgattgatcctgcagtgaaggggacacttaatgttcttggatcagttgcgaagacaacgactgttaggagagtggttttgacatcatctattgcagcagtttctttcaacggcaagccaagaacgcgtgaagcggtgattgatgagacatggtggtcagatcctgactattgcagaaaaaaacagctctggtatatactttcgaagacattggctgaggacgctgcgtggaagtttgcgaaagagaaaggtttcgatatggttacaataaatccagcaatggttataggcagtttgttacaaccaacactgaatacaacttgtgatgccatcttacaattgctaaanggttctgaaacatatncnantactacntctgnatgggntaatgtgaaana</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="67247" stop="62228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66947" g_stop="66772" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66771" i_stop="64623" i_length="2149">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64622" g_stop="64453" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="346" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64452" i_stop="63399" i_length="1054">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63398" g_stop="63207" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="538" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63206" i_stop="62697" i_length="510">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62696" g_stop="62534" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="701" r_length="163" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-U578093" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66947" e_stop="66772"/>
          <exon e_start="64622" e_stop="64453"/>
          <exon e_start="63398" e_stop="63207"/>
          <exon e_start="62696" e_stop="62534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTATACCAAAAAAAATAATAATTAAAAGTATTCAATATTATTATTATTATTATGAGTTTGGAAACAAAAACAGTAGTGTGTGTAACAGGAGCTTCTGGTTTCATAGCTTCATGGCTAGTCAAATTATTGCTAAATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAAGTTTGTATTTTTTGTGTACTCTCTATTTTTTTAAAAAAAAAAATTGTTTTTTTTTTGGGATTATTTGGATTTTGATTCATTTATTGGAGAAATTGGGGATATGGGGTTTGTGATTTTTGAAAGAAAAAAAATTGGAAAAAATGTTAGTTTTTTAAGTGTGTTTGATGAAAATTGTGTTTATGATTTATCTTTGGTAAGTGTGTTTGATGAAAATTGTGTTTATGATTTATCTTTGGTTTGGTTGTTTGTGTTAGTAACCTCTCAAAATAGAGAGTTTTTTCGATTTTTCGAATAATCAATTCCAACTTAATTTTCTATTTTAATTTTTTTAAAATAAAAATCTTCTTTTTCTTTTTTTAATATTATATTGTTATTTTTTATTTCATAATATAAATCATTTCTTTCATTTTCTTTCCGAATAATTCAATCTATATAATTGTCATGTAATATAAAATTTTATTTTTAAAAATTCTTTATTTAATATTCTCTTCGTCTCATTTTATGTGACACTTTTTTTTTTTTTACGAATAATTCACCCTATATAATTGTCATGTAATATAAAATTTTATTTTTTAAAAATTCTTTATTTGATATTCTCTCCGTCTCATTTTATGTGACACTTTTTATTTTTCGAGAGAAACATTTTAATTTTGATCAGATATTTGCGTATGGAATCTTCAAATTTTTTAAAATGAAATTTATATATTTATAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAACGTAAAAAGGATCTATGAAACACTTACGGTCAGAGATAGACTTGTTTGAATCTCGAAATATGAAAAGTGTCACATAAAATGAAACGAAAAGAGTGTAAAATTATATTTTATTTCAAATTTCTAGAGAAAAGCATAACCACAATCACAATCATAACTGTTATTTGGATCATACTTTGATTTTTTCCGGATATTGTAAAATCTAAAAACGATCTACTAGACTACTAAGTTATTTTTGTTATGTATTGTATTGTTATGTTATATTTAAATTATTATGTTATGTCTTGTATTGTTTTCTTATATTTATATTATTATGCTATGTATTGTATTGTTATGCTATATTTGAATTATTATGTTAATGTATTTGTATTATTATCTTATATTTATATTATTATGCTATGTATTGTATTTGTAAATTAAAACTTTTACATTTTATGCATTCTTCATAGTGAAAACTAATAATAATATCAAATTATATCACTTAAGTGATGAAAATAAAAATATTATTAATTCGGGATGAAAGTAGTATGTATTAAATAATATAATTTTTAAAACATTATATTACATTTGAGACGAATTATAAATATTAGATATTTAATTAATAACCTTATATGAAAAATAATATGTTAATTATAAAATGATTAAAATAATAAAAAAGTGAAATAGCAAATCTCTATAAATAGAGAATAGAGGGTTTTTTAAAGTGTGATTAGATTTTTGTTTTACTCTCCAAATATAGAACCGGATACCTTATAACAATAACTTTGCAGCACTTCGTAAGAAATAACAACGTTTAAAGCATATTTTCGAAAGCAGAAAGTTAAAACCAGTAAAGAAAATAAAATCTATAACAAATTCAGAAATAATATTAATAAGAAAAATAATTAAGCCCACTAAATGCACAGTGTCCTTAAGAAAATTATTTCCCTCAAGTATTCGAGGTTAAAACCAGTAAAGAAAATAAAATCTATGACAAATCAGAAATAATATTAATAAGAAAAAATAATTAAGCCCACTAAATGCACAGTGTGTCCTTAAGAAAATTATTTCCCTCAAGTATTCGAGGTTAATGGAAACTATCCTCCTAGAATGAAACGATTTTACTGAGCAGTGTATCGGTACAAAAATCAACGATCAGTGAACTACTCAACAGTAGCAAAATACACTAATTTATTTGTGCGGAAGAAGAAGAAAGAAGAAATAGTTGAGTTAAACAAAGAATCATAAGAAAGGAAGTTGTTCAAAGGACCTACATTCACTCATAATCGATAAACCGAAGTGTTTATAAGCTAGTTTGACCGACTTATAAACTTTGTCAATCGCATCGTTATGCTTTCTATTATGTTATATTAATGTAATAATCATTTTTTTTTAAATTTTCGAATCCGCCTCTAGATGATCAAGAAAAGATAGATCACTTGACTTGTCTTGATGGAGCCAAGGAGAGACTTCACTTGTTCAAAGCAAGCCTGCTGGAACAAGGTTCCTTTGATGCTGTTGTTGATGGCTGTGAAGGTGTATTTCATACAGCATCTCCTTGTTACTTTGAAGCTAAAGATCCACAGGTTCCTCTCTCATTCTCTTGATTAATATGGTTTTGTATCTATGTTGCCGAGACTCTCTAAAAATGAGTGGAAACTTCAAAACTAGTGCATTTTGGAGGATCTGACATGGGTGCGGCCAACATTTTTTTGAATAGTACGAGCAACATAGGTTTTGACGTCTACTTTTGCAAGCTTACTCTTTGGATAGTTAGTCTTGTTGTAGAACCACATAAATTGGATGAATGAAAACTAGTGCATTTTGGAGGATCTGACATGGGTGCGGCCAACATTTTTTTGAATAGTACGAGCAACATAGGCGTTGACGTCTACTTTTGCAAGCTTACTCTTTGGATAGTTAGTCTTGTTATAAAACCACATAAAATTGGATGAATGAAAACTAGTGCATTTTGGAGGATCAGTACGAGCAACATAGGTTTTGACGTCTATCAAAATAGTTGAGCAAGAGCTATCAAAGCTAAATTAGCTATAGCAGTCTTATCAAAAGCAAAAAAGCGCAGAAAAAGCTCTAAAGTCCGTTGAGGTGTTAAGTGCAAAGCGCAGAAAAAGCTCTAAGGTCCATTTAAGTGTTAAATTCAAAGCGTGGACTTCAATGCAAAAAGGCGCAAAGGGAGGAAAATATACAAATATATACGTTTTGTCCAAGATTTATAATTCTAAATATGACGAAAAATAAATGAATGAAGAAACTTAAATTTTTTCTATGATGAGTTGAATTATCAATTGTTTAGTGCTGCTTCTTTAGAAGTGGCTTACTGCTAAGGAAAAGTATGCCTTAAAGCCTTGATGACGACACTAAAGCTCACATTAAGCGAGTAGAAGAGCTCAACATGTTTTGAGCCTCGCTTCAGGGCCTAAGTGTGCCTTTGACAACTCTGGTATATAGTACTCATGTAAGGATTACTGTTGTTCACCTTTACTTGGTAAATATAAGAAAATTTCACCTAACGAAACTGGCTGTTGTGCTCTTCGATCTGCTGGTCCTATTTCTCTGTTCTACTTTTTGGTTTTTCGTCTATTGATGTAATGGATTAGCCCTACTGTTAACGTGCTGCAGGCGGAACTGATTGATCCTGCAGTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCGAAGACAACGACTGTTAGGAGAGTGGTTTTGACATCATCTATTGCAGCAGTTTCTTTCAACGGCAAGCCAAGAACGCGTGAAGCGGTGATTGATGAGACATGGTGGTCAGATCCTGACTATTGCAGAAAAAAACAGGTGCCTTAGTAACCAAGGTTTTGAGCTGAATGTTTCTGAATGCAAAACTTACCCGGCATGGTTTAGGATTATATTTTTTCTTCGGAAAAAAGGACAAATATACCCCTGAAATATCGTAAATGGTATGCAAATATCCTTTGTCATACTTTTGAGACATTGGTGCCCTTGTCGTCAAAAAACTAGAGCATATATGTTCTTCACTCTAACGGAAGACTAAATAGGGACACGTGTCACAATCTTATCTATCGATTCGATATTTAATAAATACTATGATATGTGTATATGTCCGTTAGTATAAAGAGTATATACGCTCTATTTATTAGATGGCAGGGGCAAAATAGGACGGAGGGTATCTGCATACCATTTACGATAGTTCGGAGGTGTATTTGTCCTTTTCCCCTTTTTTCTTTTAGCTAATATGGTTCAAATTCTCCAATCTTCACATATAGAGGTTTATAAAGCAGAGGGAACTGATGGTAACTGTGGACCATCTTTTGTTGTTTTTGCTAGCTCTGGTATATACTTTCGAAGACATTGGCTGAGGACGCTGCGTGGAAGTTTGCGAAAGAGAAAGGTTTCGATATGGTTACAATAAATCCAGCAACGGTTATAGGCAGTTTGTTACAGCCAACACTGAATACAACTTGTGATGCCATCTTACAATTGCTAAAAG</genome_strand>
        <mrna_strand>TTCTTTATACAAAAAAAATAAATAATTAAAAGTATTCAATATTATTATTATTATTATGAGTTTGGAAACAAAAACAGTAGTGTGTGTAACAGGAGCTTCTGGTTTCATAGCTTCATGGCTAGTCAAATTATTGCTAAATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAGAAAAGATAGATCACTTGACTTGTCTTGATGGAGCCAAGGAGAGACTTCACTTGTTCAAAGCAAGCCTGCTGGAACAAGGTTCCTTTGATGCTGTTGTTGATGGCTGTGAAGGTGTATTTCATACAGCATCTCCTTGTTACTTTGAAGCTAAAGATCCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAACTGATTGATCCTGCAGTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCGAAGACAACGACTGTTAGGAGAGTGGTTTTGACATCATCTATTGCAGCAGTTTCTTTCAACGGCAAGCCAAGAACGCGTGAAGCGGTGATTGATGAGACATGGTGGTCAGATCCTGACTATTGCAGAAAAAAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATATACTTTCGAAGACATTGGCTGAGGACGCTGCGTGGAAGTTTGCGAAAGAGAAAGGTTTCGATATGGTTACAATAAATCCAGCAATGGTTATAGGCAGTTTGTTACAACCAACACTGAATACAACTTGTGATGCCATCTTACAATTGCTAAANG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590322" ref_strand="+" ref_description="SGN-U590322 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|148888527|gb|ABR15769.1| (e_value=7e-37) phenylacetaldehyde; (*ATH) AT1G51410.1 (e_value=7e-37) | Symbol: None | similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase | chr1:19063553-19065092 FORWARD | Aliases: F5D21.12, F5D21_12; (*SWP) sp|P51104|DFRA_DIACA (e_value=7e-27) Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A; ">
      <seq>ttctttatacaaaaaaaataaataattaaaagtattcaatattattattattattatgagtttggaaacaaaaacagtagtgtgtgtaacaggagcttctggtttcatagcttcatggcttgtcaaattattgctaaatcgtggttatactgtgaaggcttctgttcgtgatccaaatgatcaagaaaagatagatcacttgacttgtcttgatggagccaaggagagacttcacttgttcaaagcaagcctgctggaacaaggttcctttgatgctgttgttgatggctgtgaaggtgtatttcatacagcatctccttgttactttgaagctaaagatccacaggttcctcactcattctcttgattaatatggttttgtatctatgttgccgagactctctaaaaatgaatggaaacttcaaaactagtgcattttggaggatctgacatgggtgcggccaacatttttttgaatagtacgagcaacaataggttttgccgtctacttttgcaagtttactctttggatagttagtcttgttgtagaaccacataaaattggatgaatgaaaactagtgcattttggaggancagtacgagcaacataggttttgacgtctatcaaaatagttgancaagagctatcnnnctaaattagctatagcactctnatcaaaancaaaaaagcgcanaaaanctctaangtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="67247" stop="63652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66947" g_stop="66772" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66771" i_stop="64623" i_length="2149">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64622" g_stop="64245" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="555" r_length="379" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64244" i_stop="64098" i_length="147">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64097" g_stop="63940" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="711" r_length="156" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-U590322" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66947" e_stop="66772"/>
          <exon e_start="64622" e_stop="64245"/>
          <exon e_start="64097" e_stop="63940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTATACCAAAAAAAATAATAATTAAAAGTATTCAATATTATTATTATTATTATGAGTTTGGAAACAAAAACAGTAGTGTGTGTAACAGGAGCTTCTGGTTTCATAGCTTCATGGCTAGTCAAATTATTGCTAAATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAAGTTTGTATTTTTTGTGTACTCTCTATTTTTTTAAAAAAAAAAATTGTTTTTTTTTTGGGATTATTTGGATTTTGATTCATTTATTGGAGAAATTGGGGATATGGGGTTTGTGATTTTTGAAAGAAAAAAAATTGGAAAAAATGTTAGTTTTTTAAGTGTGTTTGATGAAAATTGTGTTTATGATTTATCTTTGGTAAGTGTGTTTGATGAAAATTGTGTTTATGATTTATCTTTGGTTTGGTTGTTTGTGTTAGTAACCTCTCAAAATAGAGAGTTTTTTCGATTTTTCGAATAATCAATTCCAACTTAATTTTCTATTTTAATTTTTTTAAAATAAAAATCTTCTTTTTCTTTTTTTAATATTATATTGTTATTTTTTATTTCATAATATAAATCATTTCTTTCATTTTCTTTCCGAATAATTCAATCTATATAATTGTCATGTAATATAAAATTTTATTTTTAAAAATTCTTTATTTAATATTCTCTTCGTCTCATTTTATGTGACACTTTTTTTTTTTTTACGAATAATTCACCCTATATAATTGTCATGTAATATAAAATTTTATTTTTTAAAAATTCTTTATTTGATATTCTCTCCGTCTCATTTTATGTGACACTTTTTATTTTTCGAGAGAAACATTTTAATTTTGATCAGATATTTGCGTATGGAATCTTCAAATTTTTTAAAATGAAATTTATATATTTATAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAACGTAAAAAGGATCTATGAAACACTTACGGTCAGAGATAGACTTGTTTGAATCTCGAAATATGAAAAGTGTCACATAAAATGAAACGAAAAGAGTGTAAAATTATATTTTATTTCAAATTTCTAGAGAAAAGCATAACCACAATCACAATCATAACTGTTATTTGGATCATACTTTGATTTTTTCCGGATATTGTAAAATCTAAAAACGATCTACTAGACTACTAAGTTATTTTTGTTATGTATTGTATTGTTATGTTATATTTAAATTATTATGTTATGTCTTGTATTGTTTTCTTATATTTATATTATTATGCTATGTATTGTATTGTTATGCTATATTTGAATTATTATGTTAATGTATTTGTATTATTATCTTATATTTATATTATTATGCTATGTATTGTATTTGTAAATTAAAACTTTTACATTTTATGCATTCTTCATAGTGAAAACTAATAATAATATCAAATTATATCACTTAAGTGATGAAAATAAAAATATTATTAATTCGGGATGAAAGTAGTATGTATTAAATAATATAATTTTTAAAACATTATATTACATTTGAGACGAATTATAAATATTAGATATTTAATTAATAACCTTATATGAAAAATAATATGTTAATTATAAAATGATTAAAATAATAAAAAAGTGAAATAGCAAATCTCTATAAATAGAGAATAGAGGGTTTTTTAAAGTGTGATTAGATTTTTGTTTTACTCTCCAAATATAGAACCGGATACCTTATAACAATAACTTTGCAGCACTTCGTAAGAAATAACAACGTTTAAAGCATATTTTCGAAAGCAGAAAGTTAAAACCAGTAAAGAAAATAAAATCTATAACAAATTCAGAAATAATATTAATAAGAAAAATAATTAAGCCCACTAAATGCACAGTGTCCTTAAGAAAATTATTTCCCTCAAGTATTCGAGGTTAAAACCAGTAAAGAAAATAAAATCTATGACAAATCAGAAATAATATTAATAAGAAAAAATAATTAAGCCCACTAAATGCACAGTGTGTCCTTAAGAAAATTATTTCCCTCAAGTATTCGAGGTTAATGGAAACTATCCTCCTAGAATGAAACGATTTTACTGAGCAGTGTATCGGTACAAAAATCAACGATCAGTGAACTACTCAACAGTAGCAAAATACACTAATTTATTTGTGCGGAAGAAGAAGAAAGAAGAAATAGTTGAGTTAAACAAAGAATCATAAGAAAGGAAGTTGTTCAAAGGACCTACATTCACTCATAATCGATAAACCGAAGTGTTTATAAGCTAGTTTGACCGACTTATAAACTTTGTCAATCGCATCGTTATGCTTTCTATTATGTTATATTAATGTAATAATCATTTTTTTTTAAATTTTCGAATCCGCCTCTAGATGATCAAGAAAAGATAGATCACTTGACTTGTCTTGATGGAGCCAAGGAGAGACTTCACTTGTTCAAAGCAAGCCTGCTGGAACAAGGTTCCTTTGATGCTGTTGTTGATGGCTGTGAAGGTGTATTTCATACAGCATCTCCTTGTTACTTTGAAGCTAAAGATCCACAGGTTCCTCTCTCATTCTCTTGATTAATATGGTTTTGTATCTATGTTGCCGAGACTCTCTAAAAATGAGTGGAAACTTCAAAACTAGTGCATTTTGGAGGATCTGACATGGGTGCGGCCAACATTTTTTTGAATAGTACGAGCAAC-ATAGGTTTTGACGTCTACTTTTGCAAGCTTACTCTTTGGATAGTTAGTCTTGTTGTAGAACCACATAAATTGGATGAATGAAAACTAGTGCATTTTGGAGGATCTGACATGGGTGCGGCCAACATTTTTTTGAATAGTACGAGCAACATAGGCGTTGACGTCTACTTTTGCAAGCTTACTCTTTGGATAGTTAGTCTTGTTATAAAACCACATAAAATTGGATGAATGAAAACTAGTGCATTTTGGAGGATCAGTACGAGCAACATAGGTTTTGACGTCTATCAAAATAGTTGAGCAAGAGCTATCAAAGCTAAATTAGCTATAGCAGTCTTATCAAAAGCAAAAAAGCGCAGAAAAAGCTCTAAAGTC</genome_strand>
        <mrna_strand>TTCTTTATACAAAAAAAATAAATAATTAAAAGTATTCAATATTATTATTATTATTATGAGTTTGGAAACAAAAACAGTAGTGTGTGTAACAGGAGCTTCTGGTTTCATAGCTTCATGGCTTGTCAAATTATTGCTAAATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAGAAAAGATAGATCACTTGACTTGTCTTGATGGAGCCAAGGAGAGACTTCACTTGTTCAAAGCAAGCCTGCTGGAACAAGGTTCCTTTGATGCTGTTGTTGATGGCTGTGAAGGTGTATTTCATACAGCATCTCCTTGTTACTTTGAAGCTAAAGATCCACAGGTTCCTCACTCATTCTCTTGATTAATATGGTTTTGTATCTATGTTGCCGAGACTCTCTAAAAATGAATGGAAACTTCAAAACTAGTGCATTTTGGAGGATCTGACATGGGTGCGGCCAACATTTTTTTGAATAGTACGAGCAACAATAGGTTTTGCCGTCTACTTTTGCAAGTTTACTCTTTGGATAGTTAGTCTTGTTGTAGAACCAC...................................................................................................................................................ATAAAATTGGATGAATGAAAACTAGTGCATTTTGGAGGANCAGTACGAGCAACATAGGTTTTGACGTCTATCAAAATAGTTGANCAAGAGCTATC-NNNCTAAATTAGCTATAGCACTCTNATCAAAANCAAAAAAGCGCA-NAAAANCTCTAANGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4731" PGL_stop="9867"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4731" e_stop="4764"/>
            <exon e_start="6412" e_stop="6702"/>
            <exon e_start="7408" e_stop="7529"/>
            <exon e_start="7636" e_stop="7704"/>
            <exon e_start="8468" e_stop="8632"/>
            <exon e_start="9165" e_stop="9867"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.942" e_score="0.990"/>
          <exon-intron don_prob="0.751" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.175" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.949" e_score="0.994"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4731" e_stop="4764" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="4765" i_stop="6411" i_length="1647"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="6412" e_stop="6702" e_length="291"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.942">
            <gDNA_intron_boundary i_start="6703" i_stop="7407" i_length="705"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7408" e_stop="7529" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.751" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7530" i_stop="7635" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7636" e_stop="7704" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.175">
            <gDNA_intron_boundary i_start="7705" i_stop="8467" i_length="763"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="8468" e_stop="8632" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.949">
            <gDNA_intron_boundary i_start="8633" i_stop="9164" i_length="532"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="9165" e_stop="9867" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4731" stop="4764"/>
              <exon start="6412" stop="6702"/>
              <exon start="7408" stop="7529"/>
              <exon start="7636" stop="7704"/>
              <exon start="8468" stop="8632"/>
              <exon start="9165" stop="9867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTACTCTCTCTTCTGCCTCTTCCCTTTCACCTG : AACATTGTACGAAGAACTAAACTTACTAGAACTAGAGAAGCATGCAATCAGAGTCCAAAAGTGCAAATTGTGGGGAAGCCAGAACTTATAATGTTCCTAATTCCACTTTAGAACCTTGGTGGAATACTGCTGGTAATAATCCTGTTTCTCTTGGACTGATGCGGGGAAGTCCATCAGATTCACCATCACCCGAACAAGCTGTGGATGGCCTATCACAGTCTGATGGTGGATCCAACGAGGAAGCTGATGATACTCCTGAAAAATCACAAAGTACCATACCTAAGCATTCAG : AGTTAGATGGGAGTTATGTGCAAGTAGATCAGAATTTACAGCCAATGGCATCTGCCATACCTCCAAAGGGTGATGGGTGCATAACACAACCCCCACAGTTTGAACTTGTTGCGCACTCCATG : GCATGTGCTCCAAATCTGTATGTTGACCCATACTATGGTGGAATACTGGCACCTTTTGGTCAGCCTATG : GTCCCTCCTCATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAG : CCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTCCAGAGTGGCACAAGGATAGAAGTTTGGCTGAGCATCAGAATTCTTACTCGAATGGTAATGGTTATGGAAAACAAATCAGCTTTCAGGAATCGAAATATCAGGCTCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATAACACCTTTTAGTACCTCTGGTCCAAGCCTGGTGGCAATTCATCCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGACTAGGACTAGAGTTGAAAAAGAAGAATTCAGTGAGCATATGGCTAGCTGTTTAGTCTAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATCATATACTTGTCAAACATTTCCTTTGTATTGCTGTATTTTAGGATCTTGATTCTGTGAAACTTCGAATTTGTTGTTTAATTCGATGACAGTGGTTGTAATGTCCTATTTCTTGTGAATTTGTTGATCCAAGTAC</gDNA_template>
            <first_frame> S  T  L  S  S  A  S  S  L  S  P   : E  H  C  T  K  N  *  T  Y  *  N  *  R  S  M  Q  S  E  S  K  S  A  N  C  G  E  A  R  T  Y  N  V  P  N  S  T  L  E  P  W  W  N  T  A  G  N  N  P  V  S  L  G  L  M  R  G  S  P  S  D  S  P  S  P  E  Q  A  V  D  G  L  S  Q  S  D  G  G  S  N  E  E  A  D  D  T  P  E  K  S  Q  S  T  I  P  K  H  S   : E  L  D  G  S  Y  V  Q  V  D  Q  N  L  Q  P  M  A  S  A  I  P  P  K  G  D  G  C  I  T  Q  P  P  Q  F  E  L  V  A  H  S  M  :  A  C  A  P  N  L  Y  V  D  P  Y  Y  G  G  I  L  A  P  F  G  Q  P  M  :  V  P  P  H  V  L  D  M  H  H  P  R  M  P  L  P  H  E  M  A  Q  E  P  V  Y  V  N  A  K  Q  Y  H  G  I  L  R  R  R  E  S  R  A  K  A  E  L  E  K  K  L  I  K  V  R  K  :  P  Y  L  H  E  S  R  H  Q  H  A  L  K  R  A  R  A  S  G  G  R  F  A  K  K  S  D  A  G  T  S  K  G  D  G  S  G  S  A  V  P  L  Q  S  V  H  S  S  G  S  E  P  L  L  S  N  A  A  D  V  P  E  W  H  K  D  R  S  L  A  E  H  Q  N  S  Y  S  N  G  N  G  Y  G  K  Q  I  S  F  Q  E  S  K  Y  Q  A  Q  S  A  Q  V  G  E  G  G  S  S  G  Q  R  W  *  K  H  H  I  T  P  F  S  T  S  G  P  S  L  V  A  I  H  P  W  L  F  I  S  M  L  W  K  R  G  V  M  R  L  V  D  S  I  L  P  F  C  T  *  K  K  D  *  D  *  S  *  K  R  R  I  Q  *  A  Y  G  *  L  F  S  L  N  C  K  V  I  G  M  K  S  C  R  *  I  I  Y  L  S  N  I  S  F  V  L  L  Y  F  R  I  L  I  L  *  N  F  E  F  V  V  *  F  D  D  S  G  C  N  V  L  F  L  V  N  L  L  I  Q  V  </first_frame>
            <second_frame>  L  L  S  L  L  P  L  P  F  H  L  :  N  I  V  R  R  T  K  L  T  R  T  R  E  A  C  N  Q  S  P  K  V  Q  I  V  G  K  P  E  L  I  M  F  L  I  P  L  *  N  L  G  G  I  L  L  V  I  I  L  F  L  L  D  *  C  G  E  V  H  Q  I  H  H  H  P  N  K  L  W  M  A  Y  H  S  L  M  V  D  P  T  R  K  L  M  I  L  L  K  N  H  K  V  P  Y  L  S  I  Q  :  S  *  M  G  V  M  C  K  *  I  R  I  Y  S  Q  W  H  L  P  Y  L  Q  R  V  M  G  A  *  H  N  P  H  S  L  N  L  L  R  T  P  W :   H  V  L  Q  I  C  M  L  T  H  T  M  V  E  Y  W  H  L  L  V  S  L  W :   S  L  L  M  Y  L  I  C  I  I  R  G  C  L  C  L  M  K  W  L  K  S  L  F  M  S  M  P  S  S  I  M  V  F  C  G  E  E  S  H  V  R  K  Q  N  L  K  R  S  *  *  K  *  E  S :   H  I  F  T  S  R  D  I  S  M  P  *  K  G  Q  E  L  L  E  G  V  L  Q  K  S  Q  M  L  V  L  Q  R  E  M  V  L  V  L  L  F  L  C  S  L  C  I  H  Q  V  L  N  L  Y  C  P  M  L  L  M  F  Q  S  G  T  R  I  E  V  W  L  S  I  R  I  L  T  R  M  V  M  V  M  E  N  K  S  A  F  R  N  R  N  I  R  L  S  L  L  R  *  G  K  E  V  L  P  A  S  D  G  R  N  I  T  *  H  L  L  V  P  L  V  Q  A  W  W  Q  F  I  L  G  F  L  F  Q  C  Y  G  K  E  G  S  C  A  *  *  I  R  F  F  L  S  V  H  K  K  R  T  R  T  R  V  E  K  E  E  F  S  E  H  M  A  S  C  L  V  *  T  V  K  L  *  V  *  K  V  V  G  R  S  Y  T  C  Q  T  F  P  L  Y  C  C  I  L  G  S  *  F  C  E  T  S  N  L  L  F  N  S  M  T  V  V  V  M  S  Y  F  L  *  I  C  *  S  K  Y </second_frame>
            <third_frame>   Y  S  L  F  C  L  F  P  F  T  * :   T  L  Y  E  E  L  N  L  L  E  L  E  K  H  A  I  R  V  Q  K  C  K  L  W  G  S  Q  N  L  *  C  S  *  F  H  F  R  T  L  V  E  Y  C  W  *  *  S  C  F  S  W  T  D  A  G  K  S  I  R  F  T  I  T  R  T  S  C  G  W  P  I  T  V  *  W  W  I  Q  R  G  S  *  *  Y  S  *  K  I  T  K  Y  H  T  *  A  F  R :   V  R  W  E  L  C  A  S  R  S  E  F  T  A  N  G  I  C  H  T  S  K  G  *  W  V  H  N  T  T  P  T  V  *  T  C  C  A  L  H   : G  M  C  S  K  S  V  C  *  P  I  L  W  W  N  T  G  T  F  W  S  A  Y   : G  P  S  S  C  T  *  Y  A  S  S  E  D  A  F  A  S  *  N  G  S  R  A  C  L  C  Q  C  Q  A  V  S  W  Y  F  A  A  K  R  V  T  C  E  S  R  T  *  K  E  A  D  K  S  E  K   : A  I  S  S  R  V  E  T  S  A  C  L  E  K  G  K  S  F  W  R  A  F  C  K  K  V  R  C  W  Y  F  K  G  R  W  F  W  F  C  C  S  F  A  V  C  A  F  I  R  F  *  T  F  T  V  Q  C  C  *  C  S  R  V  A  Q  G  *  K  F  G  *  A  S  E  F  L  L  E  W  *  W  L  W  K  T  N  Q  L  S  G  I  E  I  S  G  S  V  C  S  G  R  G  R  R  F  F  R  P  A  M  V  E  T  S  H  N  T  F  *  Y  L  W  S  K  P  G  G  N  S  S  L  A  F  Y  F  N  V  M  E  K  R  G  H  A  P  S  R  F  D  S  S  F  L  Y  I  K  K  G  L  G  L  E  L  K  K  K  N  S  V  S  I  W  L  A  V  *  S  K  L  *  S  Y  R  Y  E  K  L  *  V  D  H  I  L  V  K  H  F  L  C  I  A  V  F  *  D  L  D  S  V  K  L  R  I  C  C  L  I  R  *  Q  W  L  *  C  P  I  S  C  E  F  V  D  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6447" stop="6702"/>
                    <exon start="7408" stop="7529"/>
                    <exon start="7636" stop="7704"/>
                    <exon start="8468" stop="8632"/>
                    <exon start="9165" stop="9497"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSMQSESKSANCGEARTYNVPNSTLEPWWNTAGNNPVSLGLMRGSPSDSPSPEQAVDGLSQSDGGSNEEADDTPEKSQSTIPKHSELDGSYVQVDQNLQPMASAIPPKGDGCITQPPQFELVAHSMACAPNLYVDPYYGGILAPFGQPMVPPHVLDMHHPRMPLPHEMAQEPVYVNAKQYHGILRRRESRAKAELEKKLIKVRKPYLHESRHQHALKRARASGGRFAKKSDAGTSKGDGSGSAVPLQSVHSSGSEPLLSNAADVPEWHKDRSLAEHQNSYSNGNGYGKQISFQESKYQAQSAQVGEGGSSGQRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8491" e_stop="9345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="8491" e_stop="9345" e_length="855"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8491" stop="9345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573337" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGCCTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCTGTCTTCCTCGTAATACAGCCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTC</gDNA_template>
            <first_frame> A  S  S  E  D  A  F  A  S  *  N  G  S  R  A  C  L  C  Q  C  Q  A  V  S  W  Y  F  A  A  K  R  V  T  C  E  S  R  T  *  K  E  A  D  K  S  E  K  G  *  Y  M  P  H  P  L  G  C  L  L  G  V  L  F  S  C  Y  L  K  N  A  *  C  T  F  L  A  A  Y  F  C  Y  M  C  L  A  V  L  E  I  F  R  C  P  G  L  E  M  Y  P  L  F  G  *  A  H  F  S  L  K  K  I  K  L  L  K  N  F  M  L  L  K  *  E  E  M  K  G  K  I  *  Y  Y  F  Y  L  C  R  T  R  S  I  H  L  F  K  L  I  R  Q  I  H  H  S  *  V  *  F  G  E  R  S  S  L  C  Q  C  L  G  Y  *  *  P  I  S  V  S  P  L  L  Y  F  Y  C  E  V  T  G  L  A  D  M  I  L  H  E  C  Y  A  D  D  M  Q  H  M  L  G  L  F  C  L  L  I  L  S  C  *  Y  F  L  S  S  S  *  Y  S  H  I  F  T  S  R  D  I  S  M  P  *  K  G  Q  E  L  L  E  G  V  L  Q  K  S  Q  M  L  V  L  Q  R  E  M  V  L  V  L  L  F  L  C  S  L  C  I  H  Q  V  L  N  L  Y  C  P  M  L  L  M  F </first_frame>
            <second_frame>  H  H  P  R  M  P  L  P  H  E  M  A  Q  E  P  V  Y  V  N  A  K  Q  Y  H  G  I  L  R  R  R  E  S  R  A  K  A  E  L  E  K  K  L  I  K  V  R  K  V  S  I  C  L  I  H  W  A  A  C  W  V  F  F  S  P  V  I  *  R  M  H  D  A  P  F  *  Q  H  I  F  V  T  C  A  W  L  F  W  R  Y  S  V  V  P  D  W  R  C  T  H  S  L  A  E  L  T  F  L  *  K  K  L  N  C  *  R  I  L  C  Y  L  S  R  R  K  *  K  V  K  S  D  I  T  F  I  C  V  E  H  G  Q  F  T  F  L  N  *  S  V  K  Y  T  T  H  K  Y  N  L  V  K  G  V  P  Y  A  N  V  W  A  I  N  N  Q  Y  Q  F  L  H  C  Y  I  F  I  V  K  S  Q  D  W  L  T  *  F  C  T  N  V  M  L  M  I  C  N  I  C  S  V  Y  S  A  Y  S  S  S  V  V  D  T  F  C  L  P  R  N  T  A  I  S  S  R  V  E  T  S  A  C  L  E  K  G  K  S  F  W  R  A  F  C  K  K  V  R  C  W  Y  F  K  G  R  W  F  W  F  C  C  S  F  A  V  C  A  F  I  R  F  *  T  F  T  V  Q  C  C  *  C   </second_frame>
            <third_frame>   I  I  R  G  C  L  C  L  M  K  W  L  K  S  L  F  M  S  M  P  S  S  I  M  V  F  C  G  E  E  S  H  V  R  K  Q  N  L  K  R  S  *  *  K  *  E  R  L  V  Y  A  S  S  T  G  L  L  V  G  C  S  F  L  L  L  S  K  E  C  M  M  H  L  F  S  S  I  F  L  L  H  V  P  G  C  S  G  D  I  P  L  S  R  I  G  D  V  P  T  L  W  L  S  S  L  F  F  K  K  N  *  T  V  K  E  F  Y  V  T  *  V  G  G  N  E  R  *  N  L  I  L  L  L  S  V  *  N  T  V  N  S  P  F  *  T  D  P  S  N  T  P  L  I  S  I  I  W  *  K  E  F  L  M  P  M  F  G  L  L  I  T  N  I  S  F  S  T  A  I  F  L  L  *  S  H  R  I  G  *  H  D  F  A  R  M  L  C  *  *  Y  A  T  Y  A  R  F  I  L  L  T  H  P  Q  L  L  I  L  S  V  F  L  V  I  Q  P  Y  L  H  E  S  R  H  Q  H  A  L  K  R  A  R  A  S  G  G  R  F  A  K  K  S  D  A  G  T  S  K  G  D  G  S  G  S  A  V  P  L  Q  S  V  H  S  S  G  S  E  P  L  L  S  N  A  A  D  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9090" stop="9344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YATYARFILLTHPQLLILSVFLVIQPYLHESRHQHALKRARASGGRFAKKSDAGTSKGDGSGSAVPLQSVHSSGSEPLLSNAADV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9065" stop="9316"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTNVMLMICNICSVYSAYSSSVVDTFCLPRNTAISSRVETSACLEKGKSFWRAFCKKVRCWYFKGRWFWFCCSFAVCAFIRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8492" stop="8692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HHPRMPLPHEMAQEPVYVNAKQYHGILRRRESRAKAELEKKLIKVRKVSICLIHWAACWVFFSPVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8628" stop="8825"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERLVYASSTGLLVGCSFLLLSKECMMHLFSSIFLLHVPGCSGDIPLSRIGDVPTLWLSSLFFKKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="7841" e_stop="8312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7841" e_stop="8312" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7841" stop="8312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTATGTCGTTAGGGATATCTAAACATAGAAAGCTGCTTCATGGTGGTTGTTTGATATATCTTTGGCAGGTGGTTAAACGTAGTCTTTGTATGTGTTGGCTTAACCCTGATATCTTCTTGTAGTTAGCTTTAGTTTAGAGACACTCACTTTCTCTGTATTGCCAACTTCCAGGTGACTTGCTAATTATCCTTCTTGCAATCATACATGTTACAACATTATTGTTCAATTTGGGATGAGTTCTTTCTTCTTTCAATTGAATTAGAATCAGTGGCGTCCAGTGCGCATGTCCCTTTCATTTAAATCATTGATTAGATTTCATAGGACAGCTAGTATAAATAGTACTCCGGATGCAGCTTCTTTTGTTTGTCTTTTAAATGAGCTCTTTTCTGTTTTTTCTATTTCGACTAACAAATAGATACAATCAGTTCCAGAAAGATCTCTTTGCTTGATATGCCTAGGACTCTAGGAAG</gDNA_template>
            <first_frame> Y  Y  V  V  R  D  I  *  T  *  K  A  A  S  W  W  L  F  D  I  S  L  A  G  G  *  T  *  S  L  Y  V  L  A  *  P  *  Y  L  L  V  V  S  F  S  L  E  T  L  T  F  S  V  L  P  T  S  R  *  L  A  N  Y  P  S  C  N  H  T  C  Y  N  I  I  V  Q  F  G  M  S  S  F  F  F  Q  L  N  *  N  Q  W  R  P  V  R  M  S  L  S  F  K  S  L  I  R  F  H  R  T  A  S  I  N  S  T  P  D  A  A  S  F  V  C  L  L  N  E  L  F  S  V  F  S  I  S  T  N  K  *  I  Q  S  V  P  E  R  S  L  C  L  I  C  L  G  L  *  E  </first_frame>
            <second_frame>  I  M  S  L  G  I  S  K  H  R  K  L  L  H  G  G  C  L  I  Y  L  W  Q  V  V  K  R  S  L  C  M  C  W  L  N  P  D  I  F  L  *  L  A  L  V  *  R  H  S  L  S  L  Y  C  Q  L  P  G  D  L  L  I  I  L  L  A  I  I  H  V  T  T  L  L  F  N  L  G  *  V  L  S  S  F  N  *  I  R  I  S  G  V  Q  C  A  C  P  F  H  L  N  H  *  L  D  F  I  G  Q  L  V  *  I  V  L  R  M  Q  L  L  L  F  V  F  *  M  S  S  F  L  F  F  L  F  R  L  T  N  R  Y  N  Q  F  Q  K  D  L  F  A  *  Y  A  *  D  S  R  K </second_frame>
            <third_frame>   L  C  R  *  G  Y  L  N  I  E  S  C  F  M  V  V  V  *  Y  I  F  G  R  W  L  N  V  V  F  V  C  V  G  L  T  L  I  S  S  C  S  *  L  *  F  R  D  T  H  F  L  C  I  A  N  F  Q  V  T  C  *  L  S  F  L  Q  S  Y  M  L  Q  H  Y  C  S  I  W  D  E  F  F  L  L  S  I  E  L  E  S  V  A  S  S  A  H  V  P  F  I  *  I  I  D  *  I  S  *  D  S  *  Y  K  *  Y  S  G  C  S  F  F  C  L  S  F  K  *  A  L  F  C  F  F  Y  F  D  *  Q  I  D  T  I  S  S  R  K  I  S  L  L  D  M  P  R  T  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0262O22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="35825" PGL_stop="36376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35825" e_stop="36376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="35825" e_stop="36376" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35825" stop="36376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598895" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTTTAGCATTGTGGCAAGAGTCATTCTATTTCCATGCATAGTTGTATTTCTAATGATAGAGTTACGAAGAAGGCATTTGTCGATTTATGATGCAATTGAAAGTTTCCTGCACGGTGAGAACAATTTCACGCCCATTAGATATTCCAACTCCAACATAAGAAAGATGACTAGAAACTTTAAAGAGAAACTAGGCCAAGGAGGTTATGGTTCAGTATATAAAGGCAAGCTTCAAAGTGGTCCTAATGTAGCAGTGAAGATCTTGAGCAAGCCCAAAGCCGATGGACAAGACTTCATCAACGAGGTTGCTACAATCGGGAGGATTCATCATGTTAACATAGTACAACTTATTGGCTATTGTGCTGAGAGATGTAAGCGTGCTCTCGTATATGACTTCATGCCTAAAGGATCACTTGAAAAGTACATCACACCTCGAGAAGGAGGAGCTGAACTATTAAGTTGGAAAAGAAAGTTTGAAATTGCTCTTGGAGTTGCTCGAGGTATTGAATACTTGCATCGAGGTTGTGACATTCAGATTCTACATTTTGACAT</gDNA_template>
            <first_frame> R  V  *  H  C  G  K  S  H  S  I  S  M  H  S  C  I  S  N  D  R  V  T  K  K  A  F  V  D  L  *  C  N  *  K  F  P  A  R  *  E  Q  F  H  A  H  *  I  F  Q  L  Q  H  K  K  D  D  *  K  L  *  R  E  T  R  P  R  R  L  W  F  S  I  *  R  Q  A  S  K  W  S  *  C  S  S  E  D  L  E  Q  A  Q  S  R  W  T  R  L  H  Q  R  G  C  Y  N  R  E  D  S  S  C  *  H  S  T  T  Y  W  L  L  C  *  E  M  *  A  C  S  R  I  *  L  H  A  *  R  I  T  *  K  V  H  H  T  S  R  R  R  S  *  T  I  K  L  E  K  K  V  *  N  C  S  W  S  C  S  R  Y  *  I  L  A  S  R  L  *  H  S  D  S  T  F  *  H </first_frame>
            <second_frame>  G  F  S  I  V  A  R  V  I  L  F  P  C  I  V  V  F  L  M  I  E  L  R  R  R  H  L  S  I  Y  D  A  I  E  S  F  L  H  G  E  N  N  F  T  P  I  R  Y  S  N  S  N  I  R  K  M  T  R  N  F  K  E  K  L  G  Q  G  G  Y  G  S  V  Y  K  G  K  L  Q  S  G  P  N  V  A  V  K  I  L  S  K  P  K  A  D  G  Q  D  F  I  N  E  V  A  T  I  G  R  I  H  H  V  N  I  V  Q  L  I  G  Y  C  A  E  R  C  K  R  A  L  V  Y  D  F  M  P  K  G  S  L  E  K  Y  I  T  P  R  E  G  G  A  E  L  L  S  W  K  R  K  F  E  I  A  L  G  V  A  R  G  I  E  Y  L  H  R  G  C  D  I  Q  I  L  H  F  D   </second_frame>
            <third_frame>   G  L  A  L  W  Q  E  S  F  Y  F  H  A  *  L  Y  F  *  *  *  S  Y  E  E  G  I  C  R  F  M  M  Q  L  K  V  S  C  T  V  R  T  I  S  R  P  L  D  I  P  T  P  T  *  E  R  *  L  E  T  L  K  R  N  *  A  K  E  V  M  V  Q  Y  I  K  A  S  F  K  V  V  L  M  *  Q  *  R  S  *  A  S  P  K  P  M  D  K  T  S  S  T  R  L  L  Q  S  G  G  F  I  M  L  T  *  Y  N  L  L  A  I  V  L  R  D  V  S  V  L  S  Y  M  T  S  C  L  K  D  H  L  K  S  T  S  H  L  E  K  E  E  L  N  Y  *  V  G  K  E  S  L  K  L  L  L  E  L  L  E  V  L  N  T  C  I  E  V  V  T  F  R  F  Y  I  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35826" stop="36374"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSIVARVILFPCIVVFLMIELRRRHLSIYDAIESFLHGENNFTPIRYSNSNIRKMTRNFKEKLGQGGYGSVYKGKLQSGPNVAVKILSKPKADGQDFINEVATIGRIHHVNIVQLIGYCAERCKRALVYDFMPKGSLEKYITPREGGAELLSWKRKFEIALGVARGIEYLHRGCDIQILHFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="41204" PGL_stop="41705"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41204" e_stop="41705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="41204" e_stop="41705" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41204" stop="41705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTACTCCAAAAAAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTG</gDNA_template>
            <first_frame> A  T  P  K  K  *  S  Q  N  *  H  Q  W  L  L  Y  *  C  H  L  H  Y  *  P  I  S  K  D  L  T  T  G  E  P  G  T  K  G  F  P  P  S  P  R  I  Q  I  G  E  E  C  *  K  L  M  H  L  L  R  M  K  K  L  *  K  K  R  R  K  K  R  A  L  D  Q  E  G  N  G  L  *  P  *  W  L  *  *  L  Q  V  H  L  Q  V  L  L  W  L  R  N  Q  R  Q  G  H  L  R  Q  R  K  S  M  H  L  F  V  S  Q  C  Q  L  L  E  Y  V  T  S  K  I  *  T  R  N  R  D  L  S  L  I  G  R  N  F  *  D  F  *  L  L  V  K  L  L  *  C  *  N  Y  R  F  R  S  N  I  V  C  V  </first_frame>
            <second_frame>  L  L  Q  K  N  S  H  K  T  N  T  N  G  F  F  T  N  V  I  F  I  T  S  P  Y  R  R  I  *  L  Q  E  N  Q  E  R  R  V  F  L  P  L  R  A  F  K  *  E  K  S  A  K  S  *  C  I  Y  *  G  *  K  N  C  E  K  K  G  G  K  K  E  H  W  I  K  K  G  M  G  F  S  H  N  G  Y  S  S  Y  K  F  I  C  K  C  C  Y  G  *  G  T  K  G  R  D  T  *  G  K  E  K  V  C  T  Y  L  C  H  N  A  N  C  *  N  M  S  Q  V  K  F  R  R  G  I  G  I  *  V  *  *  V  V  T  F  K  I  F  N  Y  *  *  S  C  C  N  V  K  I  I  G  S  G  L  I  *  S  V  L </second_frame>
            <third_frame>   Y  S  K  K  I  V  T  K  L  T  P  M  A  S  L  L  M  S  S  S  L  L  A  H  I  E  G  S  N  Y  R  R  T  R  N  E  G  F  S  S  L  S  A  H  S  N  R  R  R  V  L  K  V  N  A  F  T  K  D  E  K  I  V  K  K  K  E  E  K  K  S  I  G  S  R  R  E  W  A  L  A  I  M  A  I  V  A  T  S  S  F  A  S  V  V  M  A  E  E  P  K  A  G  T  L  E  A  K  K  K  Y  A  P  I  C  V  T  M  P  T  A  R  I  C  H  K  *  N  L  D  A  E  S  G  F  K  F  N  R  S  *  L  L  R  F  L  I  I  S  E  V  V  V  M  L  K  L  *  V  Q  V  *  Y  S  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41206" stop="41586"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSKKIVTKLTPMASLLMSSSLLAHIEGSNYRRTRNEGFSSLSAHSNRRRVLKVNAFTKDEKIVKKKEEKKSIGSRREWALAIMAIVATSSFASVVMAEEPKAGTLEAKKKYAPICVTMPTARICHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="53589" PGL_stop="54023"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53589" e_stop="54023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="53589" e_stop="54023" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53589" stop="54023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTAGATATTGAGCCTGAAAATTTTGGATTCAACACAAATCTTCAAATATCAATAAATCCATTTGGTTTTCTCCTACAAACCAAACTCAACAAAACACAACAATAGTGTTCTAATTTCTTCTATCAAACCAGTCTGTAAAAATCTCTAGATATAGAACAAATTTCAACCTCATCTGATCGAAATTTATTAACGGATATACCATTCGACTTCTCGATTCTATAATTAGCTAAAAGAAGTAAAAAAAAAAAGTGTGTAGGGTAGGGTGGGGTGGGTAGTATTGTTCAACAAAACCATAAAAGCTTTGAGAAGCCTTTTACATAGAAGATGAACCTCCAAAAAACTTCTTTTCCTTCAAACTTTCAACAGTTTCTTTGATGCTTTCTTCAAGGGTAGTAAACTCAATACCCAAGCTTTTTGCCTTCTCCTTTGATAC</gDNA_template>
            <first_frame> N  *  I  L  S  L  K  I  L  D  S  T  Q  I  F  K  Y  Q  *  I  H  L  V  F  S  Y  K  P  N  S  T  K  H  N  N  S  V  L  I  S  S  I  K  P  V  C  K  N  L  *  I  *  N  K  F  Q  P  H  L  I  E  I  Y  *  R  I  Y  H  S  T  S  R  F  Y  N  *  L  K  E  V  K  K  K  S  V  *  G  R  V  G  W  V  V  L  F  N  K  T  I  K  A  L  R  S  L  L  H  R  R  *  T  S  K  K  L  L  F  L  Q  T  F  N  S  F  F  D  A  F  F  K  G  S  K  L  N  T  Q  A  F  C  L  L  L  *  Y </first_frame>
            <second_frame>  I  R  Y  *  A  *  K  F  W  I  Q  H  K  S  S  N  I  N  K  S  I  W  F  S  P  T  N  Q  T  Q  Q  N  T  T  I  V  F  *  F  L  L  S  N  Q  S  V  K  I  S  R  Y  R  T  N  F  N  L  I  *  S  K  F  I  N  G  Y  T  I  R  L  L  D  S  I  I  S  *  K  K  *  K  K  K  V  C  R  V  G  W  G  G  *  Y  C  S  T  K  P  *  K  L  *  E  A  F  Y  I  E  D  E  P  P  K  N  F  F  S  F  K  L  S  T  V  S  L  M  L  S  S  R  V  V  N  S  I  P  K  L  F  A  F  S  F  D   </second_frame>
            <third_frame>   L  D  I  E  P  E  N  F  G  F  N  T  N  L  Q  I  S  I  N  P  F  G  F  L  L  Q  T  K  L  N  K  T  Q  Q  *  C  S  N  F  F  Y  Q  T  S  L  *  K  S  L  D  I  E  Q  I  S  T  S  S  D  R  N  L  L  T  D  I  P  F  D  F  S  I  L  *  L  A  K  R  S  K  K  K  K  C  V  G  *  G  G  V  G  S  I  V  Q  Q  N  H  K  S  F  E  K  P  F  T  *  K  M  N  L  Q  K  T  S  F  P  S  N  F  Q  Q  F  L  *  C  F  L  Q  G  *  *  T  Q  Y  P  S  F  L  P  S  P  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0262O22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="59788" PGL_stop="53997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59788" e_stop="59671"/>
            <exon e_start="58224" e_stop="58055"/>
            <exon e_start="57018" e_stop="56827"/>
            <exon e_start="56041" e_stop="55879"/>
            <exon e_start="55123" e_stop="54937"/>
            <exon e_start="54060" e_stop="53997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59788" e_stop="59671" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59670" i_stop="58225" i_length="1446"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58224" e_stop="58055" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.892" acc_prob="0.921">
            <gDNA_intron_boundary i_start="58054" i_stop="57019" i_length="1036"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57018" e_stop="56827" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.974">
            <gDNA_intron_boundary i_start="56826" i_stop="56042" i_length="785"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56041" e_stop="55879" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.978">
            <gDNA_intron_boundary i_start="55878" i_stop="55124" i_length="755"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55123" e_stop="54937" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54936" i_stop="54061" i_length="876"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54060" e_stop="53997" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="59671"/>
              <exon start="58224" stop="58055"/>
              <exon start="57018" stop="56827"/>
              <exon start="56041" stop="55879"/>
              <exon start="55123" stop="54937"/>
              <exon start="54060" stop="53997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580655" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAGTGTGACAGCGAAAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATAGTGGTTACAATGTGAAGGCTTCTGTTCGTGATCCAA : ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAG : GCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAG : CTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGCATTGATATGGTTGTAGTAAACCCTGCTATGGTTATTGGTCCTCTGTTACAGCCTACACTTAATACCAGTTCTGCTGCAGTCTTGAGCTTGGTAAATG : GTGCTGAGACATACCCAAATTCCTCTTTTGGGTGGGTTAACGTGAAAGATGTTGCAAATGCACATATTCTTGCATTTGAGAACCCTTCAGCTAATGGGAGATACTTAATGGTTGAGAGGGTTGCACACTATTCTGATATATTGAAGATATTGCGTGACCTTTATCCTACTATGCAACTTCCAGAAAA : GTGTGCTGATGACAACCCATTGATGCAAAATTATCAAGTATCAAAGGAGAAGGCAAAAAGCTTG</gDNA_template>
            <first_frame> M  S  V  T  A  K  T  V  C  V  T  G  A  S  G  Y  I  A  S  W  L  V  K  F  L  L  H  S  G  Y  N  V  K  A  S  V  R  D  P   : N  D  P  K  K  T  Q  H  L  L  S  L  G  G  A  K  E  R  L  H  L  F  K  A  N  L  L  E  E  G  S  F  D  A  V  V  D  G  C  E  G  V  F  H  T  A  S  P  F  Y  Y  S  V  T  D  P  Q  :  A  E  L  L  D  P  A  V  K  G  T  L  N  L  L  G  S  C  A  K  A  P  S  V  K  R  V  V  L  T  S  S  I  A  A  V  A  Y  S  G  Q  P  R  T  P  E  V  V  V  D  E  S  W  W  T  S  P  D  Y  C  K  E  K  Q  :  L  W  Y  V  L  S  K  T  L  A  E  D  A  A  W  K  F  V  K  E  K  G  I  D  M  V  V  V  N  P  A  M  V  I  G  P  L  L  Q  P  T  L  N  T  S  S  A  A  V  L  S  L  V  N   : G  A  E  T  Y  P  N  S  S  F  G  W  V  N  V  K  D  V  A  N  A  H  I  L  A  F  E  N  P  S  A  N  G  R  Y  L  M  V  E  R  V  A  H  Y  S  D  I  L  K  I  L  R  D  L  Y  P  T  M  Q  L  P  E  K :   C  A  D  D  N  P  L  M  Q  N  Y  Q  V  S  K  E  K  A  K  S  L </first_frame>
            <second_frame>  *  V  *  Q  R  K  Q  C  V  *  Q  E  L  Q  V  T  *  L  H  G  *  S  N  S  C  Y  I  V  V  T  M  *  R  L  L  F  V  I  Q  :  M  I  P  R  K  R  S  T  C  F  L  L  V  G  P  R  R  G  F  T  C  S  K  Q  T  Y  *  K  K  V  H  L  M  L  *  L  M  D  V  K  V  Y  S  I  Q  R  L  L  F  T  T  L  L  Q  T  H  R :   L  N  Y  L  I  L  L  L  R  E  H  S  I  F  S  G  H  V  P  K  H  H  Q  *  N  E  L  F  *  R  L  P  *  L  Q  L  L  T  V  V  S  L  G  H  L  R  L  W  L  M  R  A  G  G  P  V  Q  T  T  A  K  K  N  S :   S  G  M  S  S  Q  R  H  W  L  R  M  L  R  G  S  L  *  R  R  K  A  L  I  W  L  *  *  T  L  L  W  L  L  V  L  C  Y  S  L  H  L  I  P  V  L  L  Q  S  *  A  W  *  M  :  V  L  R  H  T  Q  I  P  L  L  G  G  L  T  *  K  M  L  Q  M  H  I  F  L  H  L  R  T  L  Q  L  M  G  D  T  *  W  L  R  G  L  H  T  I  L  I  Y  *  R  Y  C  V  T  F  I  L  L  C  N  F  Q  K   : S  V  L  M  T  T  H  *  C  K  I  I  K  Y  Q  R  R  R  Q  K  A   </second_frame>
            <third_frame>   E  C  D  S  E  N  S  V  C  N  R  S  F  R  L  H  S  F  M  A  S  Q  I  L  A  T  *  W  L  Q  C  E  G  F  C  S  *  S  K :   *  S  Q  E  N  A  A  L  A  F  S  W  W  G  Q  G  E  A  S  L  V  Q  S  K  P  I  R  R  R  F  I  *  C  C  S  *  W  M  *  R  C  I  P  Y  S  V  S  F  L  L  L  C  Y  R  P  T   : G  *  I  T  *  S  C  C  *  G  N  T  Q  S  S  R  V  M  C  Q  S  T  I  S  K  T  S  C  F  N  V  F  H  S  C  S  C  L  Q  W  S  A  S  D  T  *  G  C  G  *  *  E  L  V  D  Q  S  R  L  L  Q  R  K  T   : A  L  V  C  P  L  K  D  I  G  *  G  C  C  V  E  V  C  E  G  E  R  H  *  Y  G  C  S  K  P  C  Y  G  Y  W  S  S  V  T  A  Y  T  *  Y  Q  F  C  C  S  L  E  L  G  K  W :   C  *  D  I  P  K  F  L  F  W  V  G  *  R  E  R  C  C  K  C  T  Y  S  C  I  *  E  P  F  S  *  W  E  I  L  N  G  *  E  G  C  T  L  F  *  Y  I  E  D  I  A  *  P  L  S  Y  Y  A  T  S  R  K  :  V  C  *  *  Q  P  I  D  A  K  L  S  S  I  K  G  E  G  K  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59788" stop="59671"/>
                    <exon start="58224" stop="58055"/>
                    <exon start="57018" stop="56827"/>
                    <exon start="56041" stop="55879"/>
                    <exon start="55123" stop="54937"/>
                    <exon start="54060" stop="53997"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSVTAKTVCVTGASGYIASWLVKFLLHSGYNVKASVRDPNDPKKTQHLLSLGGAKERLHLFKANLLEEGSFDAVVDGCEGVFHTASPFYYSVTDPQAELLDPAVKGTLNLLGSCAKAPSVKRVVLTSSIAAVAYSGQPRTPEVVVDESWWTSPDYCKEKQLWYVLSKTLAEDAAWKFVKEKGIDMVVVNPAMVIGPLLQPTLNTSSAAVLSLVNGAETYPNSSFGWVNVKDVANAHILAFENPSANGRYLMVERVAHYSDILKILRDLYPTMQLPEKCADDNPLMQNYQVSKEKAKSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="66947" PGL_stop="62534"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66947" e_stop="66772"/>
            <exon e_start="64622" e_stop="64453"/>
            <exon e_start="63398" e_stop="63207"/>
            <exon e_start="62696" e_stop="62534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.869" acc_prob="0.930" e_score="0.983"/>
          <exon-intron don_prob="0.984" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.683" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="66947" e_stop="66772" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.869" acc_prob="0.930">
            <gDNA_intron_boundary i_start="66771" i_stop="64623" i_length="2149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64622" e_stop="64453" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64452" i_stop="63399" i_length="1054"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63398" e_stop="63207" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.683">
            <gDNA_intron_boundary i_start="63206" i_stop="62697" i_length="510"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="62696" e_stop="62534" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66947" stop="66772"/>
              <exon start="64622" stop="64453"/>
              <exon start="63398" stop="63207"/>
              <exon start="62696" stop="62534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTTATACCAAAAAAAATAATAATTAAAAGTATTCAATATTATTATTATTATTATGAGTTTGGAAACAAAAACAGTAGTGTGTGTAACAGGAGCTTCTGGTTTCATAGCTTCATGGCTAGTCAAATTATTGCTAAATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAA : ATGATCAAGAAAAGATAGATCACTTGACTTGTCTTGATGGAGCCAAGGAGAGACTTCACTTGTTCAAAGCAAGCCTGCTGGAACAAGGTTCCTTTGATGCTGTTGTTGATGGCTGTGAAGGTGTATTTCATACAGCATCTCCTTGTTACTTTGAAGCTAAAGATCCACAG : GCGGAACTGATTGATCCTGCAGTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCGAAGACAACGACTGTTAGGAGAGTGGTTTTGACATCATCTATTGCAGCAGTTTCTTTCAACGGCAAGCCAAGAACGCGTGAAGCGGTGATTGATGAGACATGGTGGTCAGATCCTGACTATTGCAGAAAAAAACAG : CTCTGGTATATACTTTCGAAGACATTGGCTGAGGACGCTGCGTGGAAGTTTGCGAAAGAGAAAGGTTTCGATATGGTTACAATAAATCCAGCAACGGTTATAGGCAGTTTGTTACAGCCAACACTGAATACAACTTGTGATGCCATCTTACAATTGCTAAAAG</gDNA_template>
            <first_frame> F  F  I  P  K  K  I  I  I  K  S  I  Q  Y  Y  Y  Y  Y  Y  E  F  G  N  K  N  S  S  V  C  N  R  S  F  W  F  H  S  F  M  A  S  Q  I  I  A  K  S  W  L  Y  C  E  G  F  C  S  *  S  K :   *  S  R  K  D  R  S  L  D  L  S  *  W  S  Q  G  E  T  S  L  V  Q  S  K  P  A  G  T  R  F  L  *  C  C  C  *  W  L  *  R  C  I  S  Y  S  I  S  L  L  L  *  S  *  R  S  T   : G  G  T  D  *  S  C  S  E  G  D  T  *  C  S  W  I  S  C  E  D  N  D  C  *  E  S  G  F  D  I  I  Y  C  S  S  F  F  Q  R  Q  A  K  N  A  *  S  G  D  *  *  D  M  V  V  R  S  *  L  L  Q  K  K  T   : A  L  V  Y  T  F  E  D  I  G  *  G  R  C  V  E  V  C  E  R  E  R  F  R  Y  G  Y  N  K  S  S  N  G  Y  R  Q  F  V  T  A  N  T  E  Y  N  L  *  C  H  L  T  I  A  K   </first_frame>
            <second_frame>  S  L  Y  Q  K  K  *  *  L  K  V  F  N  I  I  I  I  I  M  S  L  E  T  K  T  V  V  C  V  T  G  A  S  G  F  I  A  S  W  L  V  K  L  L  L  N  R  G  Y  T  V  K  A  S  V  R  D  P   : N  D  Q  E  K  I  D  H  L  T  C  L  D  G  A  K  E  R  L  H  L  F  K  A  S  L  L  E  Q  G  S  F  D  A  V  V  D  G  C  E  G  V  F  H  T  A  S  P  C  Y  F  E  A  K  D  P  Q  :  A  E  L  I  D  P  A  V  K  G  T  L  N  V  L  G  S  V  A  K  T  T  T  V  R  R  V  V  L  T  S  S  I  A  A  V  S  F  N  G  K  P  R  T  R  E  A  V  I  D  E  T  W  W  S  D  P  D  Y  C  R  K  K  Q  :  L  W  Y  I  L  S  K  T  L  A  E  D  A  A  W  K  F  A  K  E  K  G  F  D  M  V  T  I  N  P  A  T  V  I  G  S  L  L  Q  P  T  L  N  T  T  C  D  A  I  L  Q  L  L  K  </second_frame>
            <third_frame>   L  Y  T  K  K  N  N  N  *  K  Y  S  I  L  L  L  L  L  *  V  W  K  Q  K  Q  *  C  V  *  Q  E  L  L  V  S  *  L  H  G  *  S  N  Y  C  *  I  V  V  I  L  *  R  L  L  F  V  I  Q  :  M  I  K  K  R  *  I  T  *  L  V  L  M  E  P  R  R  D  F  T  C  S  K  Q  A  C  W  N  K  V  P  L  M  L  L  L  M  A  V  K  V  Y  F  I  Q  H  L  L  V  T  L  K  L  K  I  H  R :   R  N  *  L  I  L  Q  *  R  G  H  L  M  F  L  D  Q  L  R  R  Q  R  L  L  G  E  W  F  *  H  H  L  L  Q  Q  F  L  S  T  A  S  Q  E  R  V  K  R  *  L  M  R  H  G  G  Q  I  L  T  I  A  E  K  N  S :   S  G  I  Y  F  R  R  H  W  L  R  T  L  R  G  S  L  R  K  R  K  V  S  I  W  L  Q  *  I  Q  Q  R  L  *  A  V  C  Y  S  Q  H  *  I  Q  L  V  M  P  S  Y  N  C  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66922" stop="66772"/>
                    <exon start="64622" stop="64453"/>
                    <exon start="63398" stop="63207"/>
                    <exon start="62696" stop="62535"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKVFNIIIIIMSLETKTVVCVTGASGFIASWLVKLLLNRGYTVKASVRDPNDQEKIDHLTCLDGAKERLHLFKASLLEQGSFDAVVDGCEGVFHTASPCYFEAKDPQAELIDPAVKGTLNVLGSVAKTTTVRRVVLTSSIAAVSFNGKPRTREAVIDETWWSDPDYCRKKQLWYILSKTLAEDAAWKFAKEKGFDMVTINPATVIGSLLQPTLNTTCDAILQLLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66947" e_stop="66772"/>
            <exon e_start="64622" e_stop="64245"/>
            <exon e_start="64097" e_stop="63940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.869" acc_prob="0.930" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.984"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="66947" e_stop="66772" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.869" acc_prob="0.930">
            <gDNA_intron_boundary i_start="66771" i_stop="64623" i_length="2149"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="64622" e_stop="64245" e_length="378"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64244" i_stop="64098" i_length="147"/>
          </intron>
          <exon e_serial="3" e_score="0.918">
            <gDNA_exon_boundary e_start="64097" e_stop="63940" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66947" stop="66772"/>
              <exon start="64622" stop="64245"/>
              <exon start="64097" stop="63940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTTATACCAAAAAAAATAATAATTAAAAGTATTCAATATTATTATTATTATTATGAGTTTGGAAACAAAAACAGTAGTGTGTGTAACAGGAGCTTCTGGTTTCATAGCTTCATGGCTAGTCAAATTATTGCTAAATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAA : ATGATCAAGAAAAGATAGATCACTTGACTTGTCTTGATGGAGCCAAGGAGAGACTTCACTTGTTCAAAGCAAGCCTGCTGGAACAAGGTTCCTTTGATGCTGTTGTTGATGGCTGTGAAGGTGTATTTCATACAGCATCTCCTTGTTACTTTGAAGCTAAAGATCCACAGGTTCCTCTCTCATTCTCTTGATTAATATGGTTTTGTATCTATGTTGCCGAGACTCTCTAAAAATGAGTGGAAACTTCAAAACTAGTGCATTTTGGAGGATCTGACATGGGTGCGGCCAACATTTTTTTGAATAGTACGAGCAACATAGGTTTTGACGTCTACTTTTGCAAGCTTACTCTTTGGATAGTTAGTCTTGTTGTAGAACCAC : ATAAAATTGGATGAATGAAAACTAGTGCATTTTGGAGGATCAGTACGAGCAACATAGGTTTTGACGTCTATCAAAATAGTTGAGCAAGAGCTATCAAAGCTAAATTAGCTATAGCAGTCTTATCAAAAGCAAAAAAGCGCAGAAAAAGCTCTAAAGTC</gDNA_template>
            <first_frame> F  F  I  P  K  K  I  I  I  K  S  I  Q  Y  Y  Y  Y  Y  Y  E  F  G  N  K  N  S  S  V  C  N  R  S  F  W  F  H  S  F  M  A  S  Q  I  I  A  K  S  W  L  Y  C  E  G  F  C  S  *  S  K :   *  S  R  K  D  R  S  L  D  L  S  *  W  S  Q  G  E  T  S  L  V  Q  S  K  P  A  G  T  R  F  L  *  C  C  C  *  W  L  *  R  C  I  S  Y  S  I  S  L  L  L  *  S  *  R  S  T  G  S  S  L  I  L  L  I  N  M  V  L  Y  L  C  C  R  D  S  L  K  M  S  G  N  F  K  T  S  A  F  W  R  I  *  H  G  C  G  Q  H  F  F  E  *  Y  E  Q  H  R  F  *  R  L  L  L  Q  A  Y  S  L  D  S  *  S  C  C  R  T  T :   *  N  W  M  N  E  N  *  C  I  L  E  D  Q  Y  E  Q  H  R  F  *  R  L  S  K  *  L  S  K  S  Y  Q  S  *  I  S  Y  S  S  L  I  K  S  K  K  A  Q  K  K  L  *  S  </first_frame>
            <second_frame>  S  L  Y  Q  K  K  *  *  L  K  V  F  N  I  I  I  I  I  M  S  L  E  T  K  T  V  V  C  V  T  G  A  S  G  F  I  A  S  W  L  V  K  L  L  L  N  R  G  Y  T  V  K  A  S  V  R  D  P   : N  D  Q  E  K  I  D  H  L  T  C  L  D  G  A  K  E  R  L  H  L  F  K  A  S  L  L  E  Q  G  S  F  D  A  V  V  D  G  C  E  G  V  F  H  T  A  S  P  C  Y  F  E  A  K  D  P  Q  V  P  L  S  F  S  *  L  I  W  F  C  I  Y  V  A  E  T  L  *  K  *  V  E  T  S  K  L  V  H  F  G  G  S  D  M  G  A  A  N  I  F  L  N  S  T  S  N  I  G  F  D  V  Y  F  C  K  L  T  L  W  I  V  S  L  V  V  E  P   : H  K  I  G  *  M  K  T  S  A  F  W  R  I  S  T  S  N  I  G  F  D  V  Y  Q  N  S  *  A  R  A  I  K  A  K  L  A  I  A  V  L  S  K  A  K  K  R  R  K  S  S  K  V </second_frame>
            <third_frame>   L  Y  T  K  K  N  N  N  *  K  Y  S  I  L  L  L  L  L  *  V  W  K  Q  K  Q  *  C  V  *  Q  E  L  L  V  S  *  L  H  G  *  S  N  Y  C  *  I  V  V  I  L  *  R  L  L  F  V  I  Q  :  M  I  K  K  R  *  I  T  *  L  V  L  M  E  P  R  R  D  F  T  C  S  K  Q  A  C  W  N  K  V  P  L  M  L  L  L  M  A  V  K  V  Y  F  I  Q  H  L  L  V  T  L  K  L  K  I  H  R  F  L  S  H  S  L  D  *  Y  G  F  V  S  M  L  P  R  L  S  K  N  E  W  K  L  Q  N  *  C  I  L  E  D  L  T  W  V  R  P  T  F  F  *  I  V  R  A  T  *  V  L  T  S  T  F  A  S  L  L  F  G  *  L  V  L  L  *  N  H  :  I  K  L  D  E  *  K  L  V  H  F  G  G  S  V  R  A  T  *  V  L  T  S  I  K  I  V  E  Q  E  L  S  K  L  N  *  L  *  Q  S  Y  Q  K  Q  K  S  A  E  K  A  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66922" stop="66772"/>
                    <exon start="64622" stop="64432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKVFNIIIIIMSLETKTVVCVTGASGFIASWLVKLLLNRGYTVKASVRDPNDQEKIDHLTCLDGAKERLHLFKASLLEQGSFDAVVDGCEGVFHTASPCYFEAKDPQVPLSFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 17 chains have been computed
$ 
$ memory statistics:
$ 19064 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2118 bytes was the average size of a spliced alignment
$ 12152 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2025 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 20 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:51:02
-->
