<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:47:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692051" ref_strand="+" ref_description="SGN-E692051 [LH_Ea07L09]">
      <seq>ccgtttcactctactctctcttctgcctcttccctttcaactgaagtaaacttactagaactagagaagcatgcaatcatagtccaaaagtgcaaattgtggggaaaccagaacttataatgttccgaattccactttataaccttggtggaatactgctggtaataatcctgtttctcttggattgatgcggggaagtccatcacattcaccatcacccgaacaagctgtggatggccgatcacagtctgatggtggatccgacgaggaagctgatgatactcctgaaaaatcacaaagtaccatacctaagcattcagagtaacatgggagttatgtgcaagtagaccagaatttacagccaatggcatcagccatacctccaaagggtgatgggtgcataacacaacccccacagtttgaacttgttgcgcactccatggcatgtgctccagatctgtatgttgacccatactatggtggaatactggcaccttttggtcagcctatggtccctcctcatgtacttgatatgcatcatccgaggatgcctttgcctcatgaaatggctcaagagcctgtttatgtcaatgcccagcactatcatggcattctgcggcgaacagagtcacgtgcgaaagcagaacttgaaaagaagctgataaaagtgagaaagccatatcttcacgagtcgagacatcaacatgcattgagaagggcatgagcttctggagggcgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="4423" stop="9531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4722" g_stop="4764" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4765" i_stop="6425" i_length="1661">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6426" g_stop="6702" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="320" r_length="277" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6703" i_stop="7407" i_length="705">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7408" g_stop="7529" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="442" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7530" i_stop="7635" i_length="106">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7636" g_stop="7704" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="511" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7705" i_stop="8467" i_length="763">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.175" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8468" g_stop="8632" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="676" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8633" i_stop="9164" i_length="532">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9165" g_stop="9231" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="743" r_length="67" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E692051" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4722" e_stop="4764"/>
          <exon e_start="6426" e_stop="6702"/>
          <exon e_start="7408" e_stop="7529"/>
          <exon e_start="7636" e_stop="7704"/>
          <exon e_start="8468" e_stop="8632"/>
          <exon e_start="9165" e_stop="9231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTCACTCTACTCTCTCTTCTGCCTCTTCCCTTTCACCTGGTAAGTTTTTTTCTTCTTTCAATTCTCAATTTTCAGCTCCTTCATGTACAATTATCTGTGTTTTTGGATTATGGGGTTTTCAGTTTTTTTTTTTTTTTTGAAATTGATCAATTCTGTGAATTTTTAGTCCAATTCTTGATTGTTCAATGGATTAACAATCTGGAGATACCCTTTTCTCTGTTTGGGATGGTGAACACACCATCTTCATTGGAAAATTAAAATATTGGTTGATTTGGTGTAGTTTTGATTTCGAAAGTTGATGTGAATCCTGATGTTTATGTTAATTGTATGGAATGAGATTCGTTTTTTTTTTTTGGTAATTATTTGGTGGGTTGATTTTATGAGTAAAGATGTTTTTTTGAGCGGTGTGGTGGGTTGAGGTGTTTCTTTTTATTGGAATTACTGTGAATTCAGAGGGAAAATGTCACTTCTTAAGTTTTTTTTTTAATGGGGATGGATTGAAGTCTGATAAGTTTTCCCCTAATTTTAGTAATAGGGGCATATGGTTTGTACTGTGGACTGGAGTATATCTTTAAAGTTCCTTTTTTTTGTGGTGGTGGCAGGGGTGGAGTTAGGGTAAGGTATCACAAGGGTCGAAAGATTACACTACATATACAAAATCAAAATTATTTTTTTGTGTATATGTGTAGGTGTTGTTGAGCCCTTTTTGCTTCTTCGTATGTTTTACTTCTTTACATTTTGAATCCCGTTAGTCATTGTCCTGGTTCTACGTTAGTCATAATCCTGTTTCGTCACTGAATGGTGGTGGTGTAGTGGATGATGGGGGTATGCATTTAAGTTGCTATAGCTTTTAGGTCTTGAGGCACAAGATATGAGGTAAACAGTGGAAAAGAAATCATAGAAAATGGGAAAAAGTGATTTTATACTTTGAATTTATCCTTCCTAGTTTTTTTAAAGGTCTTGGGGGAACTAGATATGAGGAAAACAGTTGCAGAAATGGGGGAAAATGGTTCTATACTTTGAGTCTATCCTTCCTAGCTCTGTTTTGTTTTTCATATATAGTTTATCTTTGGTGTAAATCTAGTTAAAAAGTAAAACTGTCTTCTTGCATGTACTATAACTTGTTTATGGAGTAAGGAAACTCCAGTATAATGACATATCTATGAAGTGTTATAATGTTACTAAAAGAGATTACTTCGTCCCTTAAAGCTAAGCGATGAGATGATAAGTTATCACTTCATAGGTGAAGCAATGTAGTATAGAGAAGTTTGTGCTTCAAAAAAGCAGAGGACAAAGTGATAACAATGAGAAAAATCTCAACTTTGAGAAGTTAGTTTTATATAGGCATTATGTGTATTTGATGCTGAAATCAGTTATTTTAATTGCAAGTTGTACTAAATTCATAGACGGTTGATTTCTGGCTTTCTTGTTCTTCACGATTAGAAATGAAAGGTTCAGAACAATTGCCTTTGGAAAAAGGAATTAAAAAAAGACACAAACATGTTGTTCAAGTCGAAGTAAATGTTATGATTGTTAAATATTAGTCTTGTTCATCTCATGCATCCTCATTAAAGTTTCAGATCCTTTTGGTAGGATATGAAACCTTATAGCAATGTGCTTCTGGAATAATTGTAGATTCCTTAAACTTGATTAACTGAGTTGCTTTGCTTTCTGTCTATCTGCCAGAACATTGTACGAAGAACTAAACTTACTAGAACTAGAGAAGCATGCAATCAGAGTCCAAAAGTGCAAATTGTGGGGAAGCCAGAACTTATAATGTTCCTAATTCCACTTTAGAACCTTGGTGGAATACTGCTGGTAATAATCCTGTTTCTCTTGGACTGATGCGGGGAAGTCCATCAGATTCACCATCACCCGAACAAGCTGTGGATGGCCTATCACAGTCTGATGGTGGATCCAACGAGGAAGCTGATGATACTCCTGAAAAATCACAAAGTACCATACCTAAGCATTCAGGTATCTCTACTATTTTTTTTTCCTAGTAAATAAATTTTATTGATAGCTAAATATAGTCAAGCTGTACGCTAGTGCTGAACTTTAAAAAGTGAGAGGCCCTCCTGTACAAAAACAACAAGGGGAGACTCCCCTATACAAAGTTACTCCTGTAGTGAGCTATAAAGTCAGTCAGGCGTATTTCATCAAATGTATCCTGTAAATTGCATGAAACTGCCAGTAGGCCTAAATACCTATATTTGAGGGTAGTTATTCTTTCCACCAAAACACCATGCGTTCCTCTATTCAATCTAAAGAGGTGCTAAAGATAAAGCAGTATGGTCATTGACAGAGTGATTTGACCTGTTTTTCTTCATTAGTCTCTTTCTGACAAGTACTCTACTTCTTTTTTCAACTAATAATATATGAATATTTGTTACGGTTGTGTTGAATAATATTGGTTTGGAAGGAGCAATATGATCAGTGAGGATTCATATAACCAATCCTGATTTGCTTGAGCTTGAGGCATAGTTGTTATGGACTGGAATTCTGTCATGATGCTTCATTTGCCTAGTTACTTTCTTCTTTTAAATCTTTTCCATAAAGAGGAAAGAAGGTGACATATTATTGACGCGGGAAGTGCTGTGGTAGAGATGGGAAACAATATATATCTTTTATGATGTTAATGGCTATAAATTACTTAAGTAATGCTCTGCATTCTTGGTTCAGAGTTAGATGGGAGTTATGTGCAAGTAGATCAGAATTTACAGCCAATGGCATCTGCCATACCTCCAAAGGGTGATGGGTGCATAACACAACCCCCACAGTTTGAACTTGTTGCGCACTCCATGGTGAGTATGTTTGACTCTATGGGTTTTGAGAAGTTTGATTTGCTTGTTGGGTTATCTCACTTTTTTTCCTTTCTGATTTTGATGTTATTCTGTAATTGGCATGCAGGCATGTGCTCCAAATCTGTATGTTGACCCATACTATGGTGGAATACTGGCACCTTTTGGTCAGCCTATGGTATGCGTGTGGTTTGAATTCATAACTTTCATTTTTCCTGTTTTTCCCCCATCACTTTTTTTAAGATCTGATGTGTTGAGAGGAAAATTTTACTTTTCTGCCAATTTATACTATTGAATACCTCTGGAACTGAGTGTATTATGTCGTTAGGGATATCTAAACATAGAAAGCTGCTTCATGGTGGTTGTTTGATATATCTTTGGCAGGTGGTTAAACGTAGTCTTTGTATGTGTTGGCTTAACCCTGATATCTTCTTGTAGTTAGCTTTAGTTTAGAGACACTCACTTTCTCTGTATTGCCAACTTCCAGGTGACTTGCTAATTATCCTTCTTGCAATCATACATGTTACAACATTATTGTTCAATTTGGGATGAGTTCTTTCTTCTTTCAATTGAATTAGAATCAGTGGCGTCCAGTGCGCATGTCCCTTTCATTTAAATCATTGATTAGATTTCATAGGACAGCTAGTATAAATAGTACTCCGGATGCAGCTTCTTTTGTTTGTCTTTTAAATGAGCTCTTTTCTGTTTTTTCTATTTCGACTAACAAATAGATACAATCAGTTCCAGAAAGATCTCTTTGCTTGATATGCCTAGGACTCTAGGAAGTAGGAAACCACCTTGAAAAACATCGCCACTGAAGAAAAATCCATCATTAAAAAAAATACAAAAAAAAATTCCATTATAACATAGTTATGCCTGGGGCTGGTTGGTGGCTGAGCACAAGATTTTTTAAGATCTTGACTGAAGGTGGTGCTATACAGGTCCCTCCTCATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGCCTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCTGTCTTCCTCGTAATACAGCCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTG</genome_strand>
        <mrna_strand>CCGTTTCACTCTACTCTCTCTTCTGCCTCTTCCCTTTCAACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAAACTTACTAGAACTAGAGAAGCATGCAATCATAGTCCAAAAGTGCAAATTGTGGGGAAACCAGAACTTATAATGTTCCGAATTCCACTTTATAACCTTGGTGGAATACTGCTGGTAATAATCCTGTTTCTCTTGGATTGATGCGGGGAAGTCCATCACATTCACCATCACCCGAACAAGCTGTGGATGGCCGATCACAGTCTGATGGTGGATCCGACGAGGAAGCTGATGATACTCCTGAAAAATCACAAAGTACCATACCTAAGCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAACATGGGAGTTATGTGCAAGTAGACCAGAATTTACAGCCAATGGCATCAGCCATACCTCCAAAGGGTGATGGGTGCATAACACAACCCCCACAGTTTGAACTTGTTGCGCACTCCATG..........................................................................................................GCATGTGCTCCAGATCTGTATGTTGACCCATACTATGGTGGAATACTGGCACCTTTTGGTCAGCCTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTCCTCATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCCAGCACTATCATGGCATTCTGCGGCGAACAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATATCTTCACGAGTCGAGACATCAACATGCATTGAGAAGGGCATGAGCTTCTGGAGGGCGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477545" ref_strand="+" ref_description="SGN-E477545 [cSTD-1-A19]">
      <seq>gttcactctactctctcttctgcctcttcccttctaactgaacattgtacgaagaactaaacttactagaactagagaagcatgcaatcagagtccaaaagtgcaaattgtgaggaagctagaacatataatgttccgaattccaccctagaaccttggtggaatactgctggcaataatcctgtttctcttggattgatgcggggaagtgcatcagattcaccaccacccgaacaagctgtggatggccgatcacaatctgatggtggatccaacgaggaagatgatgatgctcctgaaaaatcacaaaggaccatacctatgcattcagatgggagttatgctcaagtagatcagaatttacagccaattgcgtcaaccattcctccaaaggatgatgggagcataacacaacccccacagcttgaacttgttgcacactccatggcatgtgctccaaatctgtatgttgacccatactatggtggaatactggcaccttttggtcagcctatggtcccttctcatgtacttgatatgcatcatccgaggatgcctttgcctcatgaaatggctcaagagcctgtttatgtcaatgccaagcagtatcatggtattctgcggcgaagagagtcacgtgcgaaagcagaacttgaaaagaagctgataaaagggagaaagccatatcttcacgagtcgagacatcagcatgccttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="4425" stop="9502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4725" g_stop="4764" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4765" i_stop="6411" i_length="1647">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6412" g_stop="6702" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="331" r_length="291" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6703" i_stop="7413" i_length="711">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7414" g_stop="7529" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="447" r_length="116" r_score="0.905"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7530" i_stop="7635" i_length="106">
            <donor d_prob="0.751" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7636" g_stop="7704" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="516" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7705" i_stop="8467" i_length="763">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.175" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8468" g_stop="8632" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="681" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8633" i_stop="9164" i_length="532">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9165" g_stop="9202" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="719" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E477545" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4725" e_stop="4764"/>
          <exon e_start="6412" e_stop="6702"/>
          <exon e_start="7414" e_stop="7529"/>
          <exon e_start="7636" e_stop="7704"/>
          <exon e_start="8468" e_stop="8632"/>
          <exon e_start="9165" e_stop="9202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCACTCTACTCTCTCTTCTGCCTCTTCCCTTTCACCTGGTAAGTTTTTTTCTTCTTTCAATTCTCAATTTTCAGCTCCTTCATGTACAATTATCTGTGTTTTTGGATTATGGGGTTTTCAGTTTTTTTTTTTTTTTTGAAATTGATCAATTCTGTGAATTTTTAGTCCAATTCTTGATTGTTCAATGGATTAACAATCTGGAGATACCCTTTTCTCTGTTTGGGATGGTGAACACACCATCTTCATTGGAAAATTAAAATATTGGTTGATTTGGTGTAGTTTTGATTTCGAAAGTTGATGTGAATCCTGATGTTTATGTTAATTGTATGGAATGAGATTCGTTTTTTTTTTTTGGTAATTATTTGGTGGGTTGATTTTATGAGTAAAGATGTTTTTTTGAGCGGTGTGGTGGGTTGAGGTGTTTCTTTTTATTGGAATTACTGTGAATTCAGAGGGAAAATGTCACTTCTTAAGTTTTTTTTTTAATGGGGATGGATTGAAGTCTGATAAGTTTTCCCCTAATTTTAGTAATAGGGGCATATGGTTTGTACTGTGGACTGGAGTATATCTTTAAAGTTCCTTTTTTTTGTGGTGGTGGCAGGGGTGGAGTTAGGGTAAGGTATCACAAGGGTCGAAAGATTACACTACATATACAAAATCAAAATTATTTTTTTGTGTATATGTGTAGGTGTTGTTGAGCCCTTTTTGCTTCTTCGTATGTTTTACTTCTTTACATTTTGAATCCCGTTAGTCATTGTCCTGGTTCTACGTTAGTCATAATCCTGTTTCGTCACTGAATGGTGGTGGTGTAGTGGATGATGGGGGTATGCATTTAAGTTGCTATAGCTTTTAGGTCTTGAGGCACAAGATATGAGGTAAACAGTGGAAAAGAAATCATAGAAAATGGGAAAAAGTGATTTTATACTTTGAATTTATCCTTCCTAGTTTTTTTAAAGGTCTTGGGGGAACTAGATATGAGGAAAACAGTTGCAGAAATGGGGGAAAATGGTTCTATACTTTGAGTCTATCCTTCCTAGCTCTGTTTTGTTTTTCATATATAGTTTATCTTTGGTGTAAATCTAGTTAAAAAGTAAAACTGTCTTCTTGCATGTACTATAACTTGTTTATGGAGTAAGGAAACTCCAGTATAATGACATATCTATGAAGTGTTATAATGTTACTAAAAGAGATTACTTCGTCCCTTAAAGCTAAGCGATGAGATGATAAGTTATCACTTCATAGGTGAAGCAATGTAGTATAGAGAAGTTTGTGCTTCAAAAAAGCAGAGGACAAAGTGATAACAATGAGAAAAATCTCAACTTTGAGAAGTTAGTTTTATATAGGCATTATGTGTATTTGATGCTGAAATCAGTTATTTTAATTGCAAGTTGTACTAAATTCATAGACGGTTGATTTCTGGCTTTCTTGTTCTTCACGATTAGAAATGAAAGGTTCAGAACAATTGCCTTTGGAAAAAGGAATTAAAAAAAGACACAAACATGTTGTTCAAGTCGAAGTAAATGTTATGATTGTTAAATATTAGTCTTGTTCATCTCATGCATCCTCATTAAAGTTTCAGATCCTTTTGGTAGGATATGAAACCTTATAGCAATGTGCTTCTGGAATAATTGTAGATTCCTTAAACTTGATTAACTGAGTTGCTTTGCTTTCTGTCTATCTGCCAGAACATTGTACGAAGAACTAAACTTACTAGAACTAGAGAAGCATGCAATCAGAGTCCAAAAGTGCAAATTGTGGGGAAGCCAGAACTTATAATGTTCCTAATTCCACTTTAGAACCTTGGTGGAATACTGCTGGTAATAATCCTGTTTCTCTTGGACTGATGCGGGGAAGTCCATCAGATTCACCATCACCCGAACAAGCTGTGGATGGCCTATCACAGTCTGATGGTGGATCCAACGAGGAAGCTGATGATACTCCTGAAAAATCACAAAGTACCATACCTAAGCATTCAGGTATCTCTACTATTTTTTTTTCCTAGTAAATAAATTTTATTGATAGCTAAATATAGTCAAGCTGTACGCTAGTGCTGAACTTTAAAAAGTGAGAGGCCCTCCTGTACAAAAACAACAAGGGGAGACTCCCCTATACAAAGTTACTCCTGTAGTGAGCTATAAAGTCAGTCAGGCGTATTTCATCAAATGTATCCTGTAAATTGCATGAAACTGCCAGTAGGCCTAAATACCTATATTTGAGGGTAGTTATTCTTTCCACCAAAACACCATGCGTTCCTCTATTCAATCTAAAGAGGTGCTAAAGATAAAGCAGTATGGTCATTGACAGAGTGATTTGACCTGTTTTTCTTCATTAGTCTCTTTCTGACAAGTACTCTACTTCTTTTTTCAACTAATAATATATGAATATTTGTTACGGTTGTGTTGAATAATATTGGTTTGGAAGGAGCAATATGATCAGTGAGGATTCATATAACCAATCCTGATTTGCTTGAGCTTGAGGCATAGTTGTTATGGACTGGAATTCTGTCATGATGCTTCATTTGCCTAGTTACTTTCTTCTTTTAAATCTTTTCCATAAAGAGGAAAGAAGGTGACATATTATTGACGCGGGAAGTGCTGTGGTAGAGATGGGAAACAATATATATCTTTTATGATGTTAATGGCTATAAATTACTTAAGTAATGCTCTGCATTCTTGGTTCAGAGTTAGATGGGAGTTATGTGCAAGTAGATCAGAATTTACAGCCAATGGCATCTGCCATACCTCCAAAGGGTGATGGGTGCATAACACAACCCCCACAGTTTGAACTTGTTGCGCACTCCATGGTGAGTATGTTTGACTCTATGGGTTTTGAGAAGTTTGATTTGCTTGTTGGGTTATCTCACTTTTTTTCCTTTCTGATTTTGATGTTATTCTGTAATTGGCATGCAGGCATGTGCTCCAAATCTGTATGTTGACCCATACTATGGTGGAATACTGGCACCTTTTGGTCAGCCTATGGTATGCGTGTGGTTTGAATTCATAACTTTCATTTTTCCTGTTTTTCCCCCATCACTTTTTTTAAGATCTGATGTGTTGAGAGGAAAATTTTACTTTTCTGCCAATTTATACTATTGAATACCTCTGGAACTGAGTGTATTATGTCGTTAGGGATATCTAAACATAGAAAGCTGCTTCATGGTGGTTGTTTGATATATCTTTGGCAGGTGGTTAAACGTAGTCTTTGTATGTGTTGGCTTAACCCTGATATCTTCTTGTAGTTAGCTTTAGTTTAGAGACACTCACTTTCTCTGTATTGCCAACTTCCAGGTGACTTGCTAATTATCCTTCTTGCAATCATACATGTTACAACATTATTGTTCAATTTGGGATGAGTTCTTTCTTCTTTCAATTGAATTAGAATCAGTGGCGTCCAGTGCGCATGTCCCTTTCATTTAAATCATTGATTAGATTTCATAGGACAGCTAGTATAAATAGTACTCCGGATGCAGCTTCTTTTGTTTGTCTTTTAAATGAGCTCTTTTCTGTTTTTTCTATTTCGACTAACAAATAGATACAATCAGTTCCAGAAAGATCTCTTTGCTTGATATGCCTAGGACTCTAGGAAGTAGGAAACCACCTTGAAAAACATCGCCACTGAAGAAAAATCCATCATTAAAAAAAATACAAAAAAAAATTCCATTATAACATAGTTATGCCTGGGGCTGGTTGGTGGCTGAGCACAAGATTTTTTAAGATCTTGACTGAAGGTGGTGCTATACAGGTCCCTCCTCATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGCCTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCTGTCTTCCTCGTAATACAGCCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAA</genome_strand>
        <mrna_strand>GTTCACTCTACTCTCTCTTCTGCCTCTTCCCTTCTAACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATTGTACGAAGAACTAAACTTACTAGAACTAGAGAAGCATGCAATCAGAGTCCAAAAGTGCAAATTGTGAGGAAGCTAGAACATATAATGTTCCGAATTCCACCCTAGAACCTTGGTGGAATACTGCTGGCAATAATCCTGTTTCTCTTGGATTGATGCGGGGAAGTGCATCAGATTCACCACCACCCGAACAAGCTGTGGATGGCCGATCACAATCTGATGGTGGATCCAACGAGGAAGATGATGATGCTCCTGAAAAATCACAAAGGACCATACCTATGCATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGTTATGCTCAAGTAGATCAGAATTTACAGCCAATTGCGTCAACCATTCCTCCAAAGGATGATGGGAGCATAACACAACCCCCACAGCTTGAACTTGTTGCACACTCCATG..........................................................................................................GCATGTGCTCCAAATCTGTATGTTGACCCATACTATGGTGGAATACTGGCACCTTTTGGTCAGCCTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTCTCATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTCTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGGGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699070" ref_strand="+" ref_description="SGN-E699070 [FA08CB08]">
      <seq>ccatcagattcaccatcacccgaacaagctgtggatggccgatcacagtctgatggtggatccaacgaggaagctgatgatactcctgaaaaatcacaaagtaccatacctaagcattcagagttagatgggagttatgtgcaagtagatcagaatttacagccaatggcatctgccatacctccaaagggtgatgggtgcataacacaacccccacagtttgaacttgttgcgcactccatggcatgtgctccaaatctgtatgttgacccatactatggtggaatactggcaccttttggtcagcctatggtccctcctcatgtacttgatatgcatcatccgaggatgcctttgcctcatgaaatggctcaagagcctgtttatgtcaatgccaagcagtatcatggtattttgcggcgaagagagtcacgtgcgaaagcagaacttgaaaagaagctgataaaagtgagaaagccatatcttcacgagtcgagacatcagcatgccttgaaaagggcaagagcttctggagggcgttttgcaaaaaagtcagatgctggtacttcaaagggagatggttctggttctgctgttcctttgcagtctgtgcattcatcaggttctgaacctttactgtccaatgctgctgatgttccagagtggcacaaggatagaagtttggctgagcatcagaattcttactcgaatggtaatggttatggaaaacaaatcagctttcaggaatcgaaatatcaggctcagtctgctcaggtaggggaaggaggttcttccggccagcgatggtagaaacatcacataacaccttttagtacctctgggtcaagcctggtggcaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="6282" stop="9850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6582" g_stop="6702" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6703" i_stop="7407" i_length="705">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7408" g_stop="7529" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="243" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7530" i_stop="7635" i_length="106">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7636" g_stop="7704" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="312" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7705" i_stop="8467" i_length="763">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.175" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8468" g_stop="8632" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="477" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8633" i_stop="9164" i_length="532">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9165" g_stop="9550" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="863" r_length="386" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E699070" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6582" e_stop="6702"/>
          <exon e_start="7408" e_stop="7529"/>
          <exon e_start="7636" e_stop="7704"/>
          <exon e_start="8468" e_stop="8632"/>
          <exon e_start="9165" e_stop="9550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAGATTCACCATCACCCGAACAAGCTGTGGATGGCCTATCACAGTCTGATGGTGGATCCAACGAGGAAGCTGATGATACTCCTGAAAAATCACAAAGTACCATACCTAAGCATTCAGGTATCTCTACTATTTTTTTTTCCTAGTAAATAAATTTTATTGATAGCTAAATATAGTCAAGCTGTACGCTAGTGCTGAACTTTAAAAAGTGAGAGGCCCTCCTGTACAAAAACAACAAGGGGAGACTCCCCTATACAAAGTTACTCCTGTAGTGAGCTATAAAGTCAGTCAGGCGTATTTCATCAAATGTATCCTGTAAATTGCATGAAACTGCCAGTAGGCCTAAATACCTATATTTGAGGGTAGTTATTCTTTCCACCAAAACACCATGCGTTCCTCTATTCAATCTAAAGAGGTGCTAAAGATAAAGCAGTATGGTCATTGACAGAGTGATTTGACCTGTTTTTCTTCATTAGTCTCTTTCTGACAAGTACTCTACTTCTTTTTTCAACTAATAATATATGAATATTTGTTACGGTTGTGTTGAATAATATTGGTTTGGAAGGAGCAATATGATCAGTGAGGATTCATATAACCAATCCTGATTTGCTTGAGCTTGAGGCATAGTTGTTATGGACTGGAATTCTGTCATGATGCTTCATTTGCCTAGTTACTTTCTTCTTTTAAATCTTTTCCATAAAGAGGAAAGAAGGTGACATATTATTGACGCGGGAAGTGCTGTGGTAGAGATGGGAAACAATATATATCTTTTATGATGTTAATGGCTATAAATTACTTAAGTAATGCTCTGCATTCTTGGTTCAGAGTTAGATGGGAGTTATGTGCAAGTAGATCAGAATTTACAGCCAATGGCATCTGCCATACCTCCAAAGGGTGATGGGTGCATAACACAACCCCCACAGTTTGAACTTGTTGCGCACTCCATGGTGAGTATGTTTGACTCTATGGGTTTTGAGAAGTTTGATTTGCTTGTTGGGTTATCTCACTTTTTTTCCTTTCTGATTTTGATGTTATTCTGTAATTGGCATGCAGGCATGTGCTCCAAATCTGTATGTTGACCCATACTATGGTGGAATACTGGCACCTTTTGGTCAGCCTATGGTATGCGTGTGGTTTGAATTCATAACTTTCATTTTTCCTGTTTTTCCCCCATCACTTTTTTTAAGATCTGATGTGTTGAGAGGAAAATTTTACTTTTCTGCCAATTTATACTATTGAATACCTCTGGAACTGAGTGTATTATGTCGTTAGGGATATCTAAACATAGAAAGCTGCTTCATGGTGGTTGTTTGATATATCTTTGGCAGGTGGTTAAACGTAGTCTTTGTATGTGTTGGCTTAACCCTGATATCTTCTTGTAGTTAGCTTTAGTTTAGAGACACTCACTTTCTCTGTATTGCCAACTTCCAGGTGACTTGCTAATTATCCTTCTTGCAATCATACATGTTACAACATTATTGTTCAATTTGGGATGAGTTCTTTCTTCTTTCAATTGAATTAGAATCAGTGGCGTCCAGTGCGCATGTCCCTTTCATTTAAATCATTGATTAGATTTCATAGGACAGCTAGTATAAATAGTACTCCGGATGCAGCTTCTTTTGTTTGTCTTTTAAATGAGCTCTTTTCTGTTTTTTCTATTTCGACTAACAAATAGATACAATCAGTTCCAGAAAGATCTCTTTGCTTGATATGCCTAGGACTCTAGGAAGTAGGAAACCACCTTGAAAAACATCGCCACTGAAGAAAAATCCATCATTAAAAAAAATACAAAAAAAAATTCCATTATAACATAGTTATGCCTGGGGCTGGTTGGTGGCTGAGCACAAGATTTTTTAAGATCTTGACTGAAGGTGGTGCTATACAGGTCCCTCCTCATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGCCTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCTGTCTTCCTCGTAATACAGCCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTCCAGAGTGGCACAAGGATAGAAGTTTGGCTGAGCATCAGAATTCTTACTCGAATGGTAATGGTTATGGAAAACAAATCAGCTTTCAGGAATCGAAATATCAGGCTCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATAACACCTTTTAGTACCTCTGGTCCAAGCCTGGTGGCAATTCA</genome_strand>
        <mrna_strand>CCATCAGATTCACCATCACCCGAACAAGCTGTGGATGGCCGATCACAGTCTGATGGTGGATCCAACGAGGAAGCTGATGATACTCCTGAAAAATCACAAAGTACCATACCTAAGCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAGATGGGAGTTATGTGCAAGTAGATCAGAATTTACAGCCAATGGCATCTGCCATACCTCCAAAGGGTGATGGGTGCATAACACAACCCCCACAGTTTGAACTTGTTGCGCACTCCATG..........................................................................................................GCATGTGCTCCAAATCTGTATGTTGACCCATACTATGGTGGAATACTGGCACCTTTTGGTCAGCCTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTCCTCATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTCCAGAGTGGCACAAGGATAGAAGTTTGGCTGAGCATCAGAATTCTTACTCGAATGGTAATGGTTATGGAAAACAAATCAGCTTTCAGGAATCGAAATATCAGGCTCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATAACACCTTTTAGTACCTCTGGGTCAAGCCTGGTGGCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274907" ref_strand="+" ref_description="SGN-E274907 [cLEN-16-O21]">
      <seq>attatgtcgttagggatatctaaacatagaaagctgcttcatggtggttgtttgatatatctttggcaggtggttaaacgtagtctttgtatgtgttggcttaaccctgatatcttcttgtagttagctttagtttagagacactcactttctctgtattgccaacttccaggtgacttgctaattatccttcttgcaatcatacatgttacaacattattgttcaatttgggatgagttctttcttctttcaattgaattagaatcagtggcgtccagtgcgcatgtccctttcatttaaatcattgattagatttcataggacagctagtataaatagtactccggatgcagcttcttttgtttgtcttttaaatgagctcttttctgttttttctatttcgactaacaaatagatacaatcagttccagaaagatctctttgcttgatatgcctaggactctaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="7542" stop="8612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7842" g_stop="8312" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E274907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7842" e_stop="8312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGTCGTTAGGGATATCTAAACATAGAAAGCTGCTTCATGGTGGTTGTTTGATATATCTTTGGCAGGTGGTTAAACGTAGTCTTTGTATGTGTTGGCTTAACCCTGATATCTTCTTGTAGTTAGCTTTAGTTTAGAGACACTCACTTTCTCTGTATTGCCAACTTCCAGGTGACTTGCTAATTATCCTTCTTGCAATCATACATGTTACAACATTATTGTTCAATTTGGGATGAGTTCTTTCTTCTTTCAATTGAATTAGAATCAGTGGCGTCCAGTGCGCATGTCCCTTTCATTTAAATCATTGATTAGATTTCATAGGACAGCTAGTATAAATAGTACTCCGGATGCAGCTTCTTTTGTTTGTCTTTTAAATGAGCTCTTTTCTGTTTTTTCTATTTCGACTAACAAATAGATACAATCAGTTCCAGAAAGATCTCTTTGCTTGATATGCCTAGGACTCTAGGAAG</genome_strand>
        <mrna_strand>ATTATGTCGTTAGGGATATCTAAACATAGAAAGCTGCTTCATGGTGGTTGTTTGATATATCTTTGGCAGGTGGTTAAACGTAGTCTTTGTATGTGTTGGCTTAACCCTGATATCTTCTTGTAGTTAGCTTTAGTTTAGAGACACTCACTTTCTCTGTATTGCCAACTTCCAGGTGACTTGCTAATTATCCTTCTTGCAATCATACATGTTACAACATTATTGTTCAATTTGGGATGAGTTCTTTCTTCTTTCAATTGAATTAGAATCAGTGGCGTCCAGTGCGCATGTCCCTTTCATTTAAATCATTGATTAGATTTCATAGGACAGCTAGTATAAATAGTACTCCGGATGCAGCTTCTTTTGTTTGTCTTTTAAATGAGCTCTTTTCTGTTTTTTCTATTTCGACTAACAAATAGATACAATCAGTTCCAGAAAGATCTCTTTGCTTGATATGCCTAGGACTCTAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695891" ref_strand="+" ref_description="SGN-E695891 [LH_Ea07L09](-)">
      <seq>atgtacttgatatgcatcatccgaggatgcctttgcctcatgaaatggctcaagagcctgtttatgtcaatgccaagcagtatcatggtattctgcggcgaagagagtcacgtgcgaaagcagaacttgaaaagaagctgataaaagtgagaaagccatatcttcacgagtcgagacatcagcatgccttgaaaagggcaagagcttctggagggcgttttgcaaaaaagtcagatgctggtacttcgaagggagatggttctggttctgctgtttctttgcagtctgtgcattcatcaggttctgaacctttactgtccaatgctgctgatgatccagagtggcataaggatagaagtttggctgagcatcagaactcttactcgaatggtaatggttatggaaaacaaatcagctttcaggaatcgaaatatcaggctcagtctgctcaggtaggggaaggaggttcttccggccagcgatggtagaaacatcacatcacacacctttagtacctctggtccaagcctgatggcaattcatccttggctttttatttcaatgttatggaaaagaggggtcatgcgcctagtagattcgattcttcctttctgtacataaaaaaaggattaggactagagttgaaaaggaagaattcagtgagcatatggctagctgtttagtctaaactgtaaagttataggtatgaaaagttgtaggtagatcatatacttgtcaaacatttcctttgtactgctgtattttaggatcttgattctgtgaaactacagagatttgtcgtttaattcgatgacagtggtgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="8178" stop="10132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8478" g_stop="8632" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8633" i_stop="9164" i_length="532">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9165" g_stop="9825" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="819" r_length="664" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="823" polyA_stop="838"/>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E695891" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8478" e_stop="8632"/>
          <exon e_start="9165" e_stop="9825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGCCTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCTGTCTTCCTCGTAATACAGCCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTCCAGAGTGGCACAAGGATAGAAGTTTGGCTGAGCATCAGAATTCTTACTCGAATGGTAATGGTTATGGAAAACAAATCAGCTTTCAGGAATCGAAATATCAGGCTCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATAACAC-CTTTTAGTACCTCTGGTCCAAGCCTGGTGGCAATTCATCCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGACTAGGACTAGAGTTGAAAAAGAAGAATTCAGTGAGCATATGGCTAGCTGTTTAGTCTAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATCATATACTTGTCAAACATTTCCTTTGTATTGCTGTATTTTAGGATCTTGATTCTGTGAAACTTC-GA-ATTTGTTGTTTAATTCGATGACAGTG</genome_strand>
        <mrna_strand>ATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTCTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCGAAGGGAGATGGTTCTGGTTCTGCTGTTTCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGATCCAGAGTGGCATAAGGATAGAAGTTTGGCTGAGCATCAGAACTCTTACTCGAATGGTAATGGTTATGGAAAACAAATCAGCTTTCAGGAATCGAAATATCAGGCTCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATCACACACCTTTAGTACCTCTGGTCCAAGCCTGATGGCAATTCATCCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGATTAGGACTAGAGTTGAAAAGGAAGAATTCAGTGAGCATATGGCTAGCTGTTTAGTCTAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATCATATACTTGTCAAACATTTCCTTTGTACTGCTGTATTTTAGGATCTTGATTCTGTGAAACTACAGAGATTTGTCGTTTAATTCGATGACAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689077" ref_strand="+" ref_description="SGN-E689077 [t3_tus_80_A05]">
      <seq>catcatccgaggatgcctttgcctcaggaaatggctcaggagcctgtttatgtcaatgccgagcagtatcatggtattttgcggcgaagagagtcacgtgcgaaagcagaacttgaaaagaagctgatgaaagtgagaaaggttagtatatgcctcatccactgggctgcttgttgggtgttcttttctcctgttatctaaggaatgcatgatgcacctttttagcagcatatttttgttacatgtgactggctgttctggagatattccgttgtcccggattggagatgtacccactctttggctgagctcacttttctttaaaaaaaattaaactgttaaagaattttatgttacttaagtaggaggaaatgaaaggtaaaatctgatattacttttatctgtgtagaacacggtcaattcacctttttaaactgatccgtcaaatacaccactcataagtataatttggtgaaaggagttccttatgccaatgtttgggctattaataaccaatatcagtttctccactgctatatttttattgtgaagtcacaggattggctgacatgattttgcacgaatgttatgctgatgatatgcaacatatgctcggtttattctgcttactcatcctcagttgttgatactttctgtcttcctcgtaatacagccatatcttcacgagtcgagacatcagcatgccttgaanagggcaagagcttctggagggcgttttgcaaaaaagtcagatgctggtacttcaaagggagatggttctggttctgctgttcctttgcagtctgtgcattcatcangttctgaacctttactgtccaatgctgctgatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="8192" stop="9645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8492" g_stop="9345" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="854" r_length="854" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E689077" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8492" e_stop="9345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGCCTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCTGTCTTCCTCGTAATACAGCCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTC</genome_strand>
        <mrna_strand>CATCATCCGAGGATGCCTTTGCCTCAGGAAATGGCTCAGGAGCCTGTTTATGTCAATGCCGAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATGAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAGGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGACTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCTGTCTTCCTCGTAATACAGCCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAANAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCANGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324124" ref_strand="+" ref_description="SGN-E324124 [cTOC-4-A7]">
      <seq>atcatccgaggatgcctttgcctcatgaaatggctcaagagcctgtttatgtcaatgccaagcagtatcatggtattttgcggcgaagagagtcacgtgcgaaagcagaacttgaaaagaagctgataaaagtgagaaaggttagtatatgcctcatccactgggctgcttgttgggtgttcttttctcctgttatctaaagaatgcatgatgcacctttttagcagcatatttttgttacatgtgcctggctgttctggagatattccgttgtcccggattggagatgtacccactctttggctgagctcacttttctttaaaaaaaattaaactgttaaagaattttatgttacttaagtaggaggaaatgaaaggtaaaatctgatattacttttatctgtgtagaacacggtcaattcacctttttaaactgatccgtcaaatacaccactcataagtataatttggtgaaaggagttccttatgccaatgtttgggctattaataaccaatatcagtttctccactgctatatttttattgtgaagtcacaggattggctgacatgattttgcacgaatgttatgctgatgatatgcaacatatgctcggtttattctgcttactcatcctcagttgttgatactttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="8193" stop="9446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8493" g_stop="9146" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E324124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8493" e_stop="9146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGCCTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCT</genome_strand>
        <mrna_strand>ATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGCCTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451602" ref_strand="+" ref_description="SGN-E451602 [cSTS-13-N23]">
      <seq>gttctggttctgctgtttctttgcagtctgtgcattcatcaggttctgaacctttgctgtccaatgctgctgatgttccagagtggcataaggatagaagtttggctgagcgtcagcattcttattcgaatggtaatggttatggaaaacaaagcagctttcaggaatcgaaatatcaggcccagtctgctcaggtaggggaaggaggttcttccggccagcgatggtagaaacatcacatcacacctttagtacctctggtccaagcctggtggcaattcattcttggctttttatttcaatgttatggaaaagaggggtcatgcgcctagtagattcgattcttcctttctgtacataaaaaaaggactaggactagagttgaaaaggaagaattcagtaagcatatggctagctgtttagtgtaatttagaggcttgtaaactgtaaagttataggtatgaaaagttgtaggtagattgtatacttgtcaagatttcctttgtgctgctgtattttaggatgttgattctgtgaaacttcgaaattgttatttagttcgatgacagtggttgtctttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="8968" stop="10130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9268" g_stop="9828" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="598"/>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E451602" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9268" e_stop="9828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTCCAGAGTGGCACAAGGATAGAAGTTTGGCTGAGCATCAGAATTCTTACTCGAATGGTAATGGTTATGGAAAACAAATCAGCTTTCAGGAATCGAAATATCAGGCTCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATAACACCTTTTAGTACCTCTGGTCCAAGCCTGGTGGCAATTCATCCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGACTAGGACTAGAGTTGAAAAAGAAGAATTCAGTGAGCATATGGCTAGCTGTTTA--G-----T-----C---TAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATCATATACTTGTCAAACATTTCCTTTGTATTGCTGTATTTTAGGATCTTGATTCTGTGAAACTTCGAATTTGTTGTTTAATTCGATGACAGTGGTT</genome_strand>
        <mrna_strand>GTTCTGGTTCTGCTGTTTCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTGCTGTCCAATGCTGCTGATGTTCCAGAGTGGCATAAGGATAGAAGTTTGGCTGAGCGTCAGCATTCTTATTCGAATGGTAATGGTTATGGAAAACAAAGCAGCTTTCAGGAATCGAAATATCAGGCCCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATCACACC-TTTAGTACCTCTGGTCCAAGCCTGGTGGCAATTCATTCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGACTAGGACTAGAGTTGAAAAGGAAGAATTCAGTAAGCATATGGCTAGCTGTTTAGTGTAATTTAGAGGCTTGTAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATTGTATACTTGTC-AAGATTTCCTTTGTGCTGCTGTATTTTAGGATGTTGATTCTGTGAAACTTCGAAATTGTTATTTAGTTCGATGACAGTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215461" ref_strand="+" ref_description="SGN-E215461 [cLEL-20-A22](-)">
      <seq>gtccaagcctggtggcaattcatccttggctttttatttcaatgttatggaaaagaggggtcatgcgcctagtagattcgattcttcctttctgtacataaaaaaaggactaggactagagttgaaaaagaagaattcagtgagcatatggctagctgtttagtctaaactgtaaagttataggtatgaaaagttgtaggtagatcatatacttgtcaaacatttcctttgtattgctgtattttaggatcttgattctgtgaaacttcgaatttgttgtttaattcgatgacagtggttgtaatgtcctatttcttgtgaatttgttgatccaagtccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="9229" stop="10173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9529" g_stop="9883" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E215461" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9529" e_stop="9883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAGCCTGGTGGCAATTCATCCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGACTAGGACTAGAGTTGAAAAAGAAGAATTCAGTGAGCATATGGCTAGCTGTTTAGTCTAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATCATATACTTGTCAAACATTTCCTTTGTATTGCTGTATTTTAGGATCTTGATTCTGTGAAACTTCGAATTTGTTGTTTAATTCGATGACAGTGGTTGTAATGTCCTATTTCTTGTGAATTTGTTGATCCAAGTACAACACATTGTGACGAA</genome_strand>
        <mrna_strand>GTCCAAGCCTGGTGGCAATTCATCCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGACTAGGACTAGAGTTGAAAAAGAAGAATTCAGTGAGCATATGGCTAGCTGTTTAGTCTAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATCATATACTTGTCAAACATTTCCTTTGTATTGCTGTATTTTAGGATCTTGATTCTGTGAAACTTCGAATTTGTTGTTTAATTCGATGACAGTGGTTGTAATGTCCTATTTCTTGTGAATTTGTTGATCCAAGTCCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359035" ref_strand="+" ref_description="SGN-E359035 [cLHT-11-I23]">
      <seq>agggtatagcattgtggcaagagtcattctatttccatgcatagttgtatttctaatgattgagttacgaagaaggcatttgtcgatttatgatgcaattgaaagtttcctgctcggtgagaacaatttcacgcccattagatattccaactccaacataagaaagatgactagaaactttaaagagaaactaggccagggaggttatggttcagtatataaaggcaagcttcaaagtggtcctaatgtagcagtgaagatcttgagcaagcccaaagccgatggacaagactttatcaacgaggttgctacaatcgggaggattcatcatgttaacatagtgcaacttattggctattgtgctgagagatgtaagcgtgctctcgtatatgacttcatgcctaaaggatcacttgaaaagtacatcacacctcgaggaggagctgaattattaagttggaaaagaaagtttgaaattgctcttggagttgctcgaggtattgaatacttgcatcgaggttgtgacattcagattctacattttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="35525" stop="36676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35825" g_stop="36376" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E359035" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35825" e_stop="36376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTAGCATTGTGGCAAGAGTCATTCTATTTCCATGCATAGTTGTATTTCTAATGATAGAGTTACGAAGAAGGCATTTGTCGATTTATGATGCAATTGAAAGTTTCCTGCACGGTGAGAACAATTTCACGCCCATTAGATATTCCAACTCCAACATAAGAAAGATGACTAGAAACTTTAAAGAGAAACTAGGCCAAGGAGGTTATGGTTCAGTATATAAAGGCAAGCTTCAAAGTGGTCCTAATGTAGCAGTGAAGATCTTGAGCAAGCCCAAAGCCGATGGACAAGACTTCATCAACGAGGTTGCTACAATCGGGAGGATTCATCATGTTAACATAGTACAACTTATTGGCTATTGTGCTGAGAGATGTAAGCGTGCTCTCGTATATGACTTCATGCCTAAAGGATCACTTGAAAAGTACATCACACCTCGAGAAGGAGGAGCTGAACTATTAAGTTGGAAAAGAAAGTTTGAAATTGCTCTTGGAGTTGCTCGAGGTATTGAATACTTGCATCGAGGTTGTGACATTCAGATTCTACATTTTGACAT</genome_strand>
        <mrna_strand>AGGGTATAGCATTGTGGCAAGAGTCATTCTATTTCCATGCATAGTTGTATTTCTAATGATTGAGTTACGAAGAAGGCATTTGTCGATTTATGATGCAATTGAAAGTTTCCTGCTCGGTGAGAACAATTTCACGCCCATTAGATATTCCAACTCCAACATAAGAAAGATGACTAGAAACTTTAAAGAGAAACTAGGCCAGGGAGGTTATGGTTCAGTATATAAAGGCAAGCTTCAAAGTGGTCCTAATGTAGCAGTGAAGATCTTGAGCAAGCCCAAAGCCGATGGACAAGACTTTATCAACGAGGTTGCTACAATCGGGAGGATTCATCATGTTAACATAGTGCAACTTATTGGCTATTGTGCTGAGAGATGTAAGCGTGCTCTCGTATATGACTTCATGCCTAAAGGATCACTTGAAAAGTACATCACACCTC--G-AGGAGGAGCTGAATTATTAAGTTGGAAAAGAAAGTTTGAAATTGCTCTTGGAGTTGCTCGAGGTATTGAATACTTGCATCGAGGTTGTGACATTCAGATTCTACATTTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415768" ref_strand="-" ref_description="SGN-E415768 [STM-21-L14]">
      <seq>aatttcattccaaaactatctgattttggtcttgcaaaatcatacccgacggataagagcattgttactctaacagcagccaggggaacaattggttatgtagctccagagttgatcaacagaagcattggtccaatatcttataaggcagatgtctatagctttggaatgttactcattgatatcgtaggcttgaaaacaaactcggcagccagagaggatatgtcaagccagtatttcccacattggatttatgatcagctcgacaagggaaaggagattgaagtactagacgagacacatgatgacgtaaagaagctgactttagttgctttgtggtgcatacaaatgaatccactcgatcgtccctcaatgactaaagtagtggaaatgcttgaaggcgaattacaagcattgcaaatgcctcccaggccctctgaatcgcgggaaccatgttcattggaattcaatctaattagttcttcaataagctcaactgagtctgtgaagttgcttgagagttgttctgattctgcaaaaatagatgtaattgttgcttgacatcacatattatgtacgtaattcgtgttgttctgaataaaatatcaagttcatgctaaattttaagatgttgttcaaaaaaaaaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="36105" stop="72802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36405" g_stop="37004" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37005" i_stop="37213" i_length="209">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37214" g_stop="37224" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="610" r_length="11" r_score="0.545"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37225" i_stop="38427" i_length="1203">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38428" g_stop="38472" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="656" r_length="46" r_score="0.644"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E415768" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415768" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36405" e_stop="37004"/>
          <exon e_start="37214" e_stop="37224"/>
          <exon e_start="38428" e_stop="38472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCATTCCGAAACTATCTGATTTTGGTCTTGCAAAATCATACCCGACGGATAAGAGCATTGTTACTCTAACAGCAGTCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTGTAAGGCAGATGTTTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGTAGCCAGAGAGGATATGTCAAGCCAATACTTCCCACATTGGATATATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGAAGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCATCCTTCAATGACTAGAGTAGTGGAAATGCTTGAAGGCGATTTACAAGCATTGCAAACGCCTCCTAGGTCCTCTGAATCGCGTGAACCATGTTCGTTGGAGTTCAATTTAACTAGTTCTTCAATGAACTCAACTGAGTCTGTGAAGTTGCTAGAGAGTTGTTCTGATTCTGCAATAATAGATGTAATTGTTGTTTGACATCACACGTTATGTACCTAATTCATGTTGTTTTATGATGTTTGTTTCTAAAAAATAAAGTTTGTCACATACTAGCCAACCTTCACTTAAGTTAATGAAGTTTTTACTTGTTTAATTATCATATATTAATTATCCATCACAAAATGGAACTTATGATGAATTTTTTTACGGATAGTGTTACGTATTGTTTCATATTGTATTAATTTAATGAATATCACTTTTGAATAGATTGTATTTTGCCAATTCAGGAGAGATAGAGGCGAGCACAGACTGACAGAAATTTGCTATAAAACATTAACTATAACCCAAATCGTTTAAGGGAAAAAGAAGAAGTATCTCCCCCAGAGACATGCCTTAATTAAACTAAGGTTCTATTATTTTCTGAACTCATTTATTTTTTTTTGTTATTTTGTGCACATATTTGGCTTGCGTCACATCCAAATGTATCTCACGCACCTCAACTGCGTGCAGTCACGGGGTGTGTTATTAAATAATACTCCCTCCGTTTTAAAAAGAATATCCATATATCCTTTTTAGTTTGTTTAAAAAAAGAATGACCCATTTCCCTTTTTGACTACCTTTTAACTTTAACTTTTCACGTGTCATGTTTAAGACCACAAGATTAAAGGGCATTTTGATACATTTGACATAACTTTAATTTAGAACCACAAGATTAAAAAGTCTTTTTTTCTTTTCTTAAACTCCGTTCCAAGTCAAACTAGGTCATCATTTTTAAAACGGAAAGAGTAAATAAAAATAAAAAGAAGAAGAAAACACTAAGGTAACATTATGATCACGTTAAATCAGCGTTACACATAATGAGACTTTGCGTTGTTATTAAACAATACGTTACAATAAAATTTAAATATTAATTAAAATAAACATAACATTTAAACTAACAATATATTACTAATAGATAACAACCATCCATCATGACTCATTAATATTAAAAAAAAAAAAGGTTTCTAAAGTTGTCTTCATTATTATTATTATTAGCAAATATAGGGAAAATGCACAACTACCCCCTCAACCTATGCCCGAAATCCTAGAGACACACTTATACTATACTAAGGTTCGATTACCCCCGAACTTATTTTATAAATAATCTTCTACCCCTTTTTAGCTTACGTGACACTAGTTTGAAAAAAAAAATCAACTATCGTTGGGCCCACAAGATAGTGCCACGTAGGCTAAAAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGGCATAGGTTGAGGGGATACTTGGGCATTATCCCGCAAATATACAATATTGTGTTTGAATATTCTAATATTGGACCCCTTTTTTTTCCCCACACATTGCTATATCAAACTTTAATTTGGTATCATATATTTTCTTTCTCCAATTAATGACATAGAAGACTTCAAGTCAACTAATTGCATAAATTATTTAT-CTGAATTTCTAGCTTACATTCAAAAAAAATAAAAATATAT</genome_strand>
        <mrna_strand>AATTTCATTCCAAAACTATCTGATTTTGGTCTTGCAAAATCATACCCGACGGATAAGAGCATTGTTACTCTAACAGCAGCCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTATAAGGCAGATGTCTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGCAGCCAGAGAGGATATGTCAAGCCAGTATTTCCCACATTGGATTTATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGATGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCGTCCCTCAATGACTAAAGTAGTGGAAATGCTTGAAGGCGAATTACAAGCATTGCAAATGCCTCCCAGGCCCTCTGAATCGCGGGAACCATGTTCATTGGAATTCAATCTAATTAGTTCTTCAATAAGCTCAACTGAGTCTGTGAAGTTGCTTGAGAGTTGTTCTGATTCTGCAAAAATAGATGTAATTGTTGCTTGACATCACATATTATGTACGTAATTCGTGTTGTTCT-GAAT.................................................................................................................................................................................................................AAAATATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCTAAATTTTAAGATGTTGTTCAAAAAAAAAAAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412493" ref_strand="-" ref_description="SGN-E412493 [STM-16-I22]">
      <seq>caaaatcatacccgacggataagagcattgttactctaacagcagccaggggaacaattggttatgtagctccagagttgatcaacagaagcattggtccaatatcttataaggcagatgtctatagctttggaatgttactcattgatatcgtaggcttgaaaacaaactcggcagccagagaggatatgtccagccagtatttcccacattggatttatgatcaactcgacaagggaaaggagattgaagtactagacgagacacatgatgacataaagaagctgactttagttgctttgtggtgcatacaaatgaatccactcgatcgtccctcaatgactagagtagtggaaatgcttgaaggtgaattacaaacattgcaaacgcctcccaggccctctgaatcgctgcaagcacgttcattggaattcaatctaagtagttcttcaataagctcaactgagtctgtgaagttgcttgagagttgttctgattcagccaaaatagatgtaattgttgcttgacatcacatattatgtacgtaattcgtgttgttctgaataaaatatcaagttcataataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="36139" stop="37308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36439" g_stop="36999" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="595"/>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E412493" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412493" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36439" e_stop="36999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCATACCCGACGGATAAGAGCATTGTTACTCTAACAGCAGTCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTGTAAGGCAGATGTTTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGTAGCCAGAGAGGATATGTCAAGCCAATACTTCCCACATTGGATATATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGAAGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCATCCTTCAATGACTAGAGTAGTGGAAATGCTTGAAGGCGATTTACAAGCATTGCAAACGCCTCCTAGGTCCTCTGAATCGCGTGAACCATGTTCGTTGGAGTTCAATTTAACTAGTTCTTCAATGAACTCAACTGAGTCTGTGAAGTTGCTAGAGAGTTGTTCTGATTCTGCAATAATAGATGTAATTGTTGTTTGACATCACACGTTATGTACCTAATTCATGTTGTTTT</genome_strand>
        <mrna_strand>CAAAATCATACCCGACGGATAAGAGCATTGTTACTCTAACAGCAGCCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTATAAGGCAGATGTCTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGCAGCCAGAGAGGATATGTCCAGCCAGTATTTCCCACATTGGATTTATGATCAACTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGATGACATAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCGTCCCTCAATGACTAGAGTAGTGGAAATGCTTGAAGGTGAATTACAAACATTGCAAACGCCTCCCAGGCCCTCTGAATCGCTGCAAGCACGTTCATTGGAATTCAATCTAAGTAGTTCTTCAATAAGCTCAACTGAGTCTGTGAAGTTGCTTGAGAGTTGTTCTGATTCAGCCAAAATAGATGTAATTGTTGCTTGACATCACATATTATGTACGTAATTCGTGTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411585" ref_strand="-" ref_description="SGN-E411585 [STM-14-N12]">
      <seq>ataagagcattgtttctctaacagcagtcaggggaacaattggatatgtagctccagagttgatcaacagaagcattggtccaatatcttataaggcagatgtctatagctttggaatgttactcattgatatcgtaggcttggaaacaaactaggcagccagagaggatatgtcaagccagtatttcccacattggatttatgatcagctcgacaagggaaaggagattgaagtactagacgagacacatgaagacgtaaagaagctgactttagttgctttgtggtgcatacaaatgaatccacttgatcgtccctcaatgactaaagtagtagaaatgcttgaaggcgaattacaagcactgcaaacgcctcccaggccttttgaatcgcgggaaccatgttcattggaattcaatctaattagttcttcaacaagctcaactgagtctgtgaagttgcttgagagttgttctgattctgcaaaaatagatgtaattgttgcttgacatcacatattatgtacgtaattcgtgttgttctgaataaaatatcaagttcatgctcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="36157" stop="72798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36457" g_stop="37004" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37005" i_stop="37213" i_length="209">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37214" g_stop="37224" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="558" r_length="11" r_score="0.545"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37225" i_stop="37894" i_length="670">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37895" g_stop="37926" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="589" r_length="31" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E411585" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411585" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36457" e_stop="37004"/>
          <exon e_start="37214" e_stop="37224"/>
          <exon e_start="37895" e_stop="37926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGAGCATTGTTACTCTAACAGCAGTCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTGTAAGGCAGATGTTTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGTAGCCAGAGAGGATATGTCAAGCCAATACTTCCCACATTGGATATATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGAAGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCATCCTTCAATGACTAGAGTAGTGGAAATGCTTGAAGGCGATTTACAAGCATTGCAAACGCCTCCTAGGTCCTCTGAATCGCGTGAACCATGTTCGTTGGAGTTCAATTTAACTAGTTCTTCAATGAACTCAACTGAGTCTGTGAAGTTGCTAGAGAGTTGTTCTGATTCTGCAATAATAGATGTAATTGTTGTTTGACATCACACGTTATGTACCTAATTCATGTTGTTTTATGATGTTTGTTTCTAAAAAATAAAGTTTGTCACATACTAGCCAACCTTCACTTAAGTTAATGAAGTTTTTACTTGTTTAATTATCATATATTAATTATCCATCACAAAATGGAACTTATGATGAATTTTTTTACGGATAGTGTTACGTATTGTTTCATATTGTATTAATTTAATGAATATCACTTTTGAATAGATTGTATTTTGCCAATTCAGGAGAGATAGAGGCGAGCACAGACTGACAGAAATTTGCTATAAAACATTAACTATAACCCAAATCGTTTAAGGGAAAAAGAAGAAGTATCTCCCCCAGAGACATGCCTTAATTAAACTAAGGTTCTATTATTTTCTGAACTCATTTATTTTTTTTTGTTATTTTGTGCACATATTTGGCTTGCGTCACATCCAAATGTATCTCACGCACCTCAACTGCGTGCAGTCACGGGGTGTGTTATTAAATAATACTCCCTCCGTTTTAAAAAGAATATCCATATATCCTTTTTAGTTTGTTTAAAAAAAGAATGACCCATTTCCCTTTTTGACTACCTTTTAACTTTAACTTTTCACGTGTCATGTTTAAGACCACAAGATTAAAGGGCATTTTGATACATTTGACATAACTTTAATTTAGAACCACAAGATTAAAAAGTCTTTTTTTCTTTTCTTAAACTCCGTTCCAAGTCAAACTAGGTCATCATTTTTAAAACGGAAAGAGTAAATAAAAATAAAAAGAAGAAGAAAACACTAAGGTAACATTATGATCACGTTAAATCAGCGTTACACATAATGAGACTTTGCGTTGTTATTAAACAATACGTTACAATAAAATTTAAATATTAATTAAAATAAACATAACATTTAAACTAACAATATATTACTAATAGATAACAACCATCCATCATGACTCATTAATATTAAAAAAAAAAAAG</genome_strand>
        <mrna_strand>ATAAGAGCATTGTTTCTCTAACAGCAGTCAGGGGAACAATTGGATATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTATAAGGCAGATGTCTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGGAAACAAACTAGGCAGCCAGAGAGGATATGTCAAGCCAGTATTTCCCACATTGGATTTATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGAAGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTTGATCGTCCCTCAATGACTAAAGTAGTAGAAATGCTTGAAGGCGAATTACAAGCACTGCAAACGCCTCCCAGGCCTTTTGAATCGCGGGAACCATGTTCATTGGAATTCAATCTAATTAGTTCTTCAACAAGCTCAACTGAGTCTGTGAAGTTGCTTGAGAGTTGTTCTGATTCTGCAAAAATAGATGTAATTGTTGCTTGACATCACATATTATGTACGTAATTCGTGTTGTTCT-GAAT.................................................................................................................................................................................................................AAAATATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATG-CTCAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540456" ref_strand="+" ref_description="SGN-E540456 [TUS-60-L22](-)">
      <seq>aaaatagtcacaaaactaacaccaatggcttctttactaatgtcatcttcattactagcccatatcgaaggatctaactacaggagaaccaggaacgaagggttttcctccctctccgcgcattcaaataggagaagagtgctaaaagttaatgcatttactaaggatgaaaaaattgtgaaaaaaaaggaggaaaaaaagagcattggatcaagaagggaatgggctttagccataatggctatagtagctacaagttcatttgcaagtgttgttatggctgaggaaccaaaggcagggacacttgaggcaaagaaaaagtatgcacctatttgtgtcacaatgccaactgctagaatatgtcacaagtaaaatttagacgcggaatcgggatttaagtttaataggtcgtaacttttaagatttttaattattagtgaagttgttgtaatgttaaaattataggttcaggtctaatatagtctgtgttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="40915" stop="42008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41215" g_stop="41708" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E540456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41215" e_stop="41708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</genome_strand>
        <mrna_strand>AAAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288943" ref_strand="+" ref_description="SGN-E288943 [cLES-17-G8]">
      <seq>aaatagtcacaaaactaacaccaatggcttctttactaatgtcatcttcattactagcccatatcgaaggatctaactacaggagaaccaggaacgaagggttttcctccctctccgcgcattcaaataggagaagagtgctaaaagttaatgcatttactaaggatgaaaaaattgtgaaaaaaaaggaggaaaaaaagagcattggatcaagaagggaatgggctttagccataatggctatagtagctacaagttcatttgcaagtgttgttatggctgaggaaccaaaggcagggacacttgaggcaaagaaaaagtatgcacctatttgtgtcacaatgccaactgctagaatatgtcacaagtaaaatttagacgcggaatcgggatttaagtttaataggtcgtaacttttaagatttttaattattagtgaagttgttgtaatgttaaaattataggttcaggtctaatatagtctgtgttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="40916" stop="42008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41216" g_stop="41708" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E288943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41216" e_stop="41708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</genome_strand>
        <mrna_strand>AAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540458" ref_strand="+" ref_description="SGN-E540458 [TUS-60-L22]">
      <seq>aaatagtcacaaaactaacaccaatggcttctttactaatgtcatcttcattactagcccatatcgaaggatctaactacaggagaaccaggaacgaagggttttcctccctctccgcgcattcaaataggagaagagtgctaaaagttaatgcatttactaaggatgaaaaaattgtgaaaaaaaaggaggaaaaaaagagcattggatcaagaagggaatgggctttagccataatggctatagtagctacaagttcatttgcaagtgttgttatggctgaggaaccaaaggcagggacacttgaggcaaagaaaaagtatgcacctatttgtgtcacaatgccaactgctagaatatgtcacaagtaaaatttagacgcggaatcgggatttaagtttaataggtcgtaacttttaagatttttaattattagtgaagttgttgtaatgttaaaattataggttcaggtctaatatagtctgtgttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="40916" stop="42008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41216" g_stop="41708" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E540458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41216" e_stop="41708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</genome_strand>
        <mrna_strand>AAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217513" ref_strand="+" ref_description="SGN-E217513 [cLEL-21-I23](-)">
      <seq>gtttactacccttgaagaaagcatcaaagaaactgttgaaagtttgaaggaaaagaagttttttggaggttcatcttctatgtaaaaggcttctcaaagcttttatggttttgttgaacaattactacccaccccaccctaccctacacactttttttttttacttcttttagctaattatagaatcgagaagtcgaatggtatatccgttaataaatttcgatcagatgaggttgaaatttgttctatatctagagatttttacagactggtttgatagaagaaattagaacactattgttgtgttttgttgagtttggtttgtaggagaaaaccaaatggatttattgatatttgaagatttgtgttgaatccaaaattttcaggctcaatatctaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="54288" stop="4548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53988" g_stop="53585" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53584" i_stop="53199" i_length="386">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.693" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53198" g_stop="53186" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="418" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E217513" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53988" e_stop="53585"/>
          <exon e_start="53198" e_stop="53186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACTACCCTTGAAGAAAGCATCAAAGAAACTGTTGAAAGTTTGAAGGAAAAGAAGTTTTTTGGAGGTTCATCTTCTATGTAAAAGGCTTCTCAAAGCTTTTATGGTTTTGTTGAACAA-TACTACCCACCCCACCCTACCCTACACACTTTTTTTTTTTACTTCTTTTAGCTAATTATAGAATCGAGAAGTCGAATGGTATATCCGTTAATAAATTTCGATCAGATGAGGTTGAAATTTGTTCTATATCTAGAGATTTTTACAGACTGGTTTGATAGAAGAAATTAGAACACTATTGTTGTGTTTTGTTGAGTTTGGTTTGTAGGAGAAAACCAAATGGATTTATTGATATTTGAAGATTTGTGTTGAATCCAAAATTTTCAGGCTCAATATCTAATTAATAGTTGATTTTGAAACAAATTGGATTATTTTTCATTTAGCAAAAACATGTTATTAAAATTTCTGTGTAAATTCTGATGTACTTATATTATTTAGAGCATATGAAATGTTTAAAAGATTAAACTAATCTACTTCTAACTCTCTTTCAAAAGAAATCAGCCATGATTTTGTGCTGTCTTGAAAATTTTAACCATGGTACTAAATACATGTCTTCCATTCATTTGCTTAGTGTAAATATCAGGTACGAGTAAATTTTTTCCGAACATCATTTTGGTCAGCGAGTCGAGCCAATGAAGTTTTCGATAGATAATTAATTTGTCTAAAAAGCACAACGTATACCCTACGAACTCCTTGACAAGTTTTTTTGACATGCCTAATTATTTATCTTAGGGAAAAAGGACAA</genome_strand>
        <mrna_strand>GTTTACTACCCTTGAAGAAAGCATCAAAGAAACTGTTGAAAGTTTGAAGGAAAAGAAGTTTTTTGGAGGTTCATCTTCTATGTAAAAGGCTTCTCAAAGCTTTTATGGTTTTGTTGAACAATTACTACCCACCCCACCCTACCCTACACACTTTTTTTTTTTACTTCTTTTAGCTAATTATAGAATCGAGAAGTCGAATGGTATATCCGTTAATAAATTTCGATCAGATGAGGTTGAAATTTGTTCTATATCTAGAGATTTTTACAGACTGGTTTGATAGAAGAAATTAGAACACTATTGTTGTGTTTTGTTGAGTTTGGTTTGTAGGAGAAAACCAAATGGATTTATTGATATTTGAAGATTTGTGTTGAATCCAAAATTTTCAGGCTCAATATCTAATTAAAA..................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217233" ref_strand="+" ref_description="SGN-E217233 [cLEL-21-I23](-)">
      <seq>aagttttttggaggttaatcttctatgtaaaaggcttctcaaagcttttatggttttgttgaacaatacctacccaccccaccctaccctacacactttttttttttacttcttttagctaattatagaatcgagaagtcgaatggtatatccgttaataaatttcgatcagatgaggttgaaatttgttctatatctagagatttttacagactggtttgatagaagaaattagaacactattgttgtgttttgttgagtttggtttgtaggagaaaaccaaatggatttattgatatttgaagatttgtgttgaatccaccactttcaggctcaatatctaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="54233" stop="4548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53933" g_stop="53585" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53584" i_stop="53199" i_length="386">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.693" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53198" g_stop="53186" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="363" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E217233" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53933" e_stop="53585"/>
          <exon e_start="53198" e_stop="53186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTTTGGAGGTTCATCTTCTATGTAAAAGGCTTCTCAAAGCTTTTATGGTTTTGTTGAACAATA-CTACCCACCCCACCCTACCCTACACACTTTTTTTTTTTACTTCTTTTAGCTAATTATAGAATCGAGAAGTCGAATGGTATATCCGTTAATAAATTTCGATCAGATGAGGTTGAAATTTGTTCTATATCTAGAGATTTTTACAGACTGGTTTGATAGAAGAAATTAGAACACTATTGTTGTGTTTTGTTGAGTTTGGTTTGTAGGAGAAAACCAAATGGATTTATTGATATTTGAAGATTTGTGTTGAATCCAAAATTTTCAGGCTCAATATCTAATTAATAGTTGATTTTGAAACAAATTGGATTATTTTTCATTTAGCAAAAACATGTTATTAAAATTTCTGTGTAAATTCTGATGTACTTATATTATTTAGAGCATATGAAATGTTTAAAAGATTAAACTAATCTACTTCTAACTCTCTTTCAAAAGAAATCAGCCATGATTTTGTGCTGTCTTGAAAATTTTAACCATGGTACTAAATACATGTCTTCCATTCATTTGCTTAGTGTAAATATCAGGTACGAGTAAATTTTTTCCGAACATCATTTTGGTCAGCGAGTCGAGCCAATGAAGTTTTCGATAGATAATTAATTTGTCTAAAAAGCACAACGTATACCCTACGAACTCCTTGACAAGTTTTTTTGACATGCCTAATTATTTATCTTAGGGAAAAAGGACAA</genome_strand>
        <mrna_strand>AAGTTTTTTGGAGGTTAATCTTCTATGTAAAAGGCTTCTCAAAGCTTTTATGGTTTTGTTGAACAATACCTACCCACCCCACCCTACCCTACACACTTTTTTTTTTTACTTCTTTTAGCTAATTATAGAATCGAGAAGTCGAATGGTATATCCGTTAATAAATTTCGATCAGATGAGGTTGAAATTTGTTCTATATCTAGAGATTTTTACAGACTGGTTTGATAGAAGAAATTAGAACACTATTGTTGTGTTTTGTTGAGTTTGGTTTGTAGGAGAAAACCAAATGGATTTATTGATATTTGAAGATTTGTGTTGAATCCACCACTTTCAGGCTCAATATCTAATTAAAA..................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291305" ref_strand="+" ref_description="SGN-E291305 [cLET-2-M9]">
      <seq>gacagcgaaaacagtgtgtgtaacaggagcttcaggttacatagcttcatggctagtcaaattcttgctacatagtggttacaatgtgaaggcttctgttcgtgatccaaatgatcccaagaaaacgcagcacttgctttctcttggtggggccaaggagaggcttcacttgttcaaagcaaacctattagaagaaggttcatttgatgctgtagttgatggatgtgaaggtgtattccatacagcgtctcctttttactactctgttacagacccacaggctgaattacttgatcctgctgttaagggaacactcaatcttctcgggtcatgtgccaaagcaccatcagtaaaacgagttgttttaacgtcttccatagctgcagttgcttacagtggtcagcctcggacacctgaggttgtggttgatgagagctggtggaccagtccagactactgcaaagaaaaacagctctggtatgtcctctcaaagacattggctgaggatgctgcgtggaagtttgtgaaggagaaaggcattgatatggttgtagtaaaccctgctatggttattggtcctctgttacagcctacacttaataccagttctgctgcagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="60080" stop="55594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59780" g_stop="59671" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59670" i_stop="58225" i_length="1446">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58224" g_stop="58055" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="280" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58054" i_stop="57019" i_length="1036">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57018" g_stop="56827" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="472" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56826" i_stop="56042" i_length="785">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56041" g_stop="55894" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="620" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E291305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59780" e_stop="59671"/>
          <exon e_start="58224" e_stop="58055"/>
          <exon e_start="57018" e_stop="56827"/>
          <exon e_start="56041" e_stop="55894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGCGAAAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATAGTGGTTACAATGTGAAGGCTTCTGTTCGTGATCCAAGTTTGTACCTTTTTTTTCTCTTTTTATTTTAGGAAAATGTGGGTTTTTTGTGGGTTATTTGGGGTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTGATTTTCTTTTGTGGGTATTGATTCTTGGATTTGGATTTTGAAAAAAAAAGGTGTTTTGTGTGTGTCATGCAGTTCAAATACTTGGAAAATGAGTGTTTTTTTGTGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTGATTTTCTTTTGTGGGTATTGATTCTTGGATTTGAATTTTGAAAAAAAAAATGGTGTTTTTGTGTGTGTCATGTAGTTGATATACTTGGAAAATGAGTGTTTTTTTGTGGGTTATTTGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTTATTTTTTTATGTGGGTATTGATTCTTGGAAAAAAAAAGTGGTACAAAAAAATTGGTTTTTTTGTGTGTCATGATTGGTTTTTTTGTGCGTCATGTAATTGATTTGTTGTACTTTATGATGGTGTTGGGTTGTTTGGATCTTGGAATATTAGGTTATGAAGATCATATGCTTTGATTGTTTGTTGGATTATGTTGATCGTCTTATCTAAAAGCTTAAACTATTAGGGGTTTGTTTGGAATGTGGAATGGTGGTTGTGATTATGGTGGACTGATTTTGCTAGTTCACCATAATCACAACAGATTTTCAATTTGGTATATTAGTGATGTTGTGATTATGGTGAACTGCCTTTGCCATGTAAAGCCACCACTCATGTATTCATTTTCATAGGAAATGAGGAAATCCACCTGGTTGGGCAGAAAAGCAAAATCATCTGCTGAGAGTTCTCATTAAATTAGCCGAATCCCTGCACCCGTATCTGTACCTAGATTCATACCCCCGAATTTTTTTAATTTAGATTATGAAGGATGCGTCCTCTAGATTCATACACTCTTCTTTTTTTAGTTTTTTACTTTGAGACTTTATACTCAATAGATAATCTTTTGACGTCCAGTAAAAATACATCTTAGAGCAAACCAACTCGCAAGCAGTTCCATAGGTTACAGTTAATCAATTAACCACAACTCGCTCTTGAACCAAGTGATATGGTGCCTATGCAGATCCCTTTCTTCCATTATATTGTGTTCTTAGCTATGTCTGTCTTGAATCAAGGGAGATTTTAGATCTTTTGAGACAATCACATCATGTGATAGAGTGTACTTTTCTCTTTTTACCACACTTATCAAATAAATTCAGTGTAGTAAAGAAAAAAAATCATAAGGTTGATCTTGTTTCACTCATCACTGTGACTTAAACTTTCAGCTCTCCGCTTATTTTATAATTTGGACAACAGAAAAACTAGATATTTCATTCTTCGCCCGTGCTATAGGTCATGTTTACTGCTTATGTGTTGAATGCGTTATGATATTTTCGTGCAGATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAGGTTCTTTCCGTTCTTGTAAATCTGATTTTACTTACCTTCATTCTAGGTAGTGTAATGGCAGTTTCTATGTATTGATAAAAGTATTGCGGTCAGCATCTTTATTAGCTTAATATCAAGTAACTTTAGTTATCAATGACAAGTATTCAGATCAGATGACACAAGTGACAAATGAACCATCTGGTACATTAAAGGAGCTAGATGCTATGCTGATGAACCATAACATGAGTCCTGTTTCTTTGAATCAGATACTATACAATTTCCATTTACTCTGCTCCTGGTTATTTTACCATTTGCCTGGCCCGATTTGTATATCTTTCTCTTTCTTTTTGAAGTTTCATTATTCTTTCAAGTTCCTTTTGTATGCTTGGCTGTTTGGTAAATAAATCTAAGACTGTGTAATACGATTGAAAGATGTAACAGTTTAGTTTCAAGATATCCTTTCATCATTGTTACTTCTCCCCTCTTGTAAATTAAGTTAGTTACATCCTACTAGAGTGAAATTCTCAAATTAATATATTAAGTACCTAACTGAAATAGTGTGAGAAAATTTTGAATTATGTCTGTAAGATAATACTCCTTGACAGTTCACTCTCTGCTTTGGCTCAACTCTTGTTTAATGATTATAAAACTATACGGTTATGGTTGGTCGAGGAAAGTTTACAGTGAGCAGGGTTCACCTCCTTAAAGGACAAGTTGCGACAGTGGCTTGAACATCATGAGAGGATAATTAAATTATAGCATACAGCTATTGGAATTACTATTTTCTCATTTCAATGTACTTGATGTGTTATTATGAAGCTTAAGAATTTTGTAATCTTATTTTGGAGTTTGTTTTATGGACTTTAACTAGTTGATATAGTTCAAATTTGGTAGTCACATGAGATTATTCACGTTCTCTAGAAAATGAAATGTGTGGTAGCCATGTTAAAAACCAACATCCGACTTGTTTTCAATGGTACTTAAAGTAAGTTAGCTTGTTTGTCCTTCTAGAGTTGGCTCCCATTTCAAATCAACTCTACATCTCCCCATATTTCAGGCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAGGTGTGCATGTATTTTCTTCTTTCTTTTTGAGCACATTCAAAGACAAATGAAGGTATTGCCCATTGAAATAGCTAGTATTGAGCTAGTCTTACCATTATTGTATGTTTTGTTATATTCGTGGTCAATGTCTCTCTTGACAAATTACAGTGTGATACTGTTGCATAAATGTGGAGCTGGGAAGGCTAGGGATCTACAGAAGTTGTAACAAAATATACGCTGTATCTAAATTTGTGATGAATTAGACGCACTTTGATTAAAATTACTTTTATCATGGTTTTGTATTGGTATGGATGTAAGAAGGACCAGACACATTTCTCTTATTTAATAATATCAACAAGAGCTCATTAACCGCGGTTCTTGACAACATGACTAGCTGATCCAATTTAAAGAATTTCTGAGTGCTTTAGTCACTGCACTATTTCTTATTAATATCATAAGTTTCTATGTTTGCAGTTATGTCAACTTAAGTTTCTGAGGTGTTCATCCAAACACTTCTCTGGTTGGTGTAGTATTAGGAATACACATTTTTCTTGGAGATGTGTGTTTTAAAGCTAGGCAGTTTCAATAACTTTTTAAGTGTAATGAATCATCTGATCTTGGTCACTTATATCATCTGTTTTATATGTGACATTGACCTGTTATGATTGAAAGCTATGATATTAGTTGCAATGTGTCCTGTTAGTGGCCTTGTTTGTTTGCATGTTTAAATAAAGCATTCACATCCCATTGTTTCTTTCCTAGATTTCAATTGTTAACGTCTCTCTATTTTCTCCTGTTCCTTTTAGCTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGCATTGATATGGTTGTAGTAAACCCTGCTATGGTTATTGGTCCTCTGTTACAGCCTACACTTAATACCAGTTCTGCTGCAGTCT</genome_strand>
        <mrna_strand>GACAGCGAAAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATAGTGGTTACAATGTGAAGGCTTCTGTTCGTGATCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGCATTGATATGGTTGTAGTAAACCCTGCTATGGTTATTGGTCCTCTGTTACAGCCTACACTTAATACCAGTTCTGCTGCAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418349" ref_strand="+" ref_description="SGN-E418349 [STM-27-G10]">
      <seq>ctgacagcgaaaacagtgtgtgtaacaggagcttcaggttacatagcttcatggctagtcaaattcttgctacatcgtggttatactgtgaaggcttctgttcgtgatccaaatgatcccaagaaaacgcagcacttgctttctcttggtggggccaaggagaggcttcacttgttcaaagcaaacctgttagaagaaggttcatttgacgctgtggttgatggatgtgaaggtgtattccatacagcgtctcctttttactactccgttacagacccacaggccgaattacttgatcctgctgttaagggaacactcaatcttcttggttcatgtgccaaagcaccatcagtaaaacgagttgttttaacatcttccatagctgcagttgcttatagtggtcagcctcggacacctgaggttgtggttgatgagagctggtggaccagtccagactactgcaaagaaaaacagctctggtatgtcctctcgaagacattggctgaggatgctgcgtggaagtttgtgaaggagaaagggattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="60081" stop="55669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59782" g_stop="59671" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59670" i_stop="58225" i_length="1446">
            <donor d_prob="0.872" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58224" g_stop="58055" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="282" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58054" i_stop="57019" i_length="1036">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57018" g_stop="56827" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="474" r_length="192" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56826" i_stop="56042" i_length="785">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56041" g_stop="55969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="547" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E418349" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59782" e_stop="59671"/>
          <exon e_start="58224" e_stop="58055"/>
          <exon e_start="57018" e_stop="56827"/>
          <exon e_start="56041" e_stop="55969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACAGCGAAAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATAGTGGTTACAATGTGAAGGCTTCTGTTCGTGATCCAAGTTTGTACCTTTTTTTTCTCTTTTTATTTTAGGAAAATGTGGGTTTTTTGTGGGTTATTTGGGGTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTGATTTTCTTTTGTGGGTATTGATTCTTGGATTTGGATTTTGAAAAAAAAAGGTGTTTTGTGTGTGTCATGCAGTTCAAATACTTGGAAAATGAGTGTTTTTTTGTGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTGATTTTCTTTTGTGGGTATTGATTCTTGGATTTGAATTTTGAAAAAAAAAATGGTGTTTTTGTGTGTGTCATGTAGTTGATATACTTGGAAAATGAGTGTTTTTTTGTGGGTTATTTGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTTATTTTTTTATGTGGGTATTGATTCTTGGAAAAAAAAAGTGGTACAAAAAAATTGGTTTTTTTGTGTGTCATGATTGGTTTTTTTGTGCGTCATGTAATTGATTTGTTGTACTTTATGATGGTGTTGGGTTGTTTGGATCTTGGAATATTAGGTTATGAAGATCATATGCTTTGATTGTTTGTTGGATTATGTTGATCGTCTTATCTAAAAGCTTAAACTATTAGGGGTTTGTTTGGAATGTGGAATGGTGGTTGTGATTATGGTGGACTGATTTTGCTAGTTCACCATAATCACAACAGATTTTCAATTTGGTATATTAGTGATGTTGTGATTATGGTGAACTGCCTTTGCCATGTAAAGCCACCACTCATGTATTCATTTTCATAGGAAATGAGGAAATCCACCTGGTTGGGCAGAAAAGCAAAATCATCTGCTGAGAGTTCTCATTAAATTAGCCGAATCCCTGCACCCGTATCTGTACCTAGATTCATACCCCCGAATTTTTTTAATTTAGATTATGAAGGATGCGTCCTCTAGATTCATACACTCTTCTTTTTTTAGTTTTTTACTTTGAGACTTTATACTCAATAGATAATCTTTTGACGTCCAGTAAAAATACATCTTAGAGCAAACCAACTCGCAAGCAGTTCCATAGGTTACAGTTAATCAATTAACCACAACTCGCTCTTGAACCAAGTGATATGGTGCCTATGCAGATCCCTTTCTTCCATTATATTGTGTTCTTAGCTATGTCTGTCTTGAATCAAGGGAGATTTTAGATCTTTTGAGACAATCACATCATGTGATAGAGTGTACTTTTCTCTTTTTACCACACTTATCAAATAAATTCAGTGTAGTAAAGAAAAAAAATCATAAGGTTGATCTTGTTTCACTCATCACTGTGACTTAAACTTTCAGCTCTCCGCTTATTTTATAATTTGGACAACAGAAAAACTAGATATTTCATTCTTCGCCCGTGCTATAGGTCATGTTTACTGCTTATGTGTTGAATGCGTTATGATATTTTCGTGCAGATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAGGTTCTTTCCGTTCTTGTAAATCTGATTTTACTTACCTTCATTCTAGGTAGTGTAATGGCAGTTTCTATGTATTGATAAAAGTATTGCGGTCAGCATCTTTATTAGCTTAATATCAAGTAACTTTAGTTATCAATGACAAGTATTCAGATCAGATGACACAAGTGACAAATGAACCATCTGGTACATTAAAGGAGCTAGATGCTATGCTGATGAACCATAACATGAGTCCTGTTTCTTTGAATCAGATACTATACAATTTCCATTTACTCTGCTCCTGGTTATTTTACCATTTGCCTGGCCCGATTTGTATATCTTTCTCTTTCTTTTTGAAGTTTCATTATTCTTTCAAGTTCCTTTTGTATGCTTGGCTGTTTGGTAAATAAATCTAAGACTGTGTAATACGATTGAAAGATGTAACAGTTTAGTTTCAAGATATCCTTTCATCATTGTTACTTCTCCCCTCTTGTAAATTAAGTTAGTTACATCCTACTAGAGTGAAATTCTCAAATTAATATATTAAGTACCTAACTGAAATAGTGTGAGAAAATTTTGAATTATGTCTGTAAGATAATACTCCTTGACAGTTCACTCTCTGCTTTGGCTCAACTCTTGTTTAATGATTATAAAACTATACGGTTATGGTTGGTCGAGGAAAGTTTACAGTGAGCAGGGTTCACCTCCTTAAAGGACAAGTTGCGACAGTGGCTTGAACATCATGAGAGGATAATTAAATTATAGCATACAGCTATTGGAATTACTATTTTCTCATTTCAATGTACTTGATGTGTTATTATGAAGCTTAAGAATTTTGTAATCTTATTTTGGAGTTTGTTTTATGGACTTTAACTAGTTGATATAGTTCAAATTTGGTAGTCACATGAGATTATTCACGTTCTCTAGAAAATGAAATGTGTGGTAGCCATGTTAAAAACCAACATCCGACTTGTTTTCAATGGTACTTAAAGTAAGTTAGCTTGTTTGTCCTTCTAGAGTTGGCTCCCATTTCAAATCAACTCTACATCTCCCCATATTTCAGGCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAGGTGTGCATGTATTTTCTTCTTTCTTTTTGAGCACATTCAAAGACAAATGAAGGTATTGCCCATTGAAATAGCTAGTATTGAGCTAGTCTTACCATTATTGTATGTTTTGTTATATTCGTGGTCAATGTCTCTCTTGACAAATTACAGTGTGATACTGTTGCATAAATGTGGAGCTGGGAAGGCTAGGGATCTACAGAAGTTGTAACAAAATATACGCTGTATCTAAATTTGTGATGAATTAGACGCACTTTGATTAAAATTACTTTTATCATGGTTTTGTATTGGTATGGATGTAAGAAGGACCAGACACATTTCTCTTATTTAATAATATCAACAAGAGCTCATTAACCGCGGTTCTTGACAACATGACTAGCTGATCCAATTTAAAGAATTTCTGAGTGCTTTAGTCACTGCACTATTTCTTATTAATATCATAAGTTTCTATGTTTGCAGTTATGTCAACTTAAGTTTCTGAGGTGTTCATCCAAACACTTCTCTGGTTGGTGTAGTATTAGGAATACACATTTTTCTTGGAGATGTGTGTTTTAAAGCTAGGCAGTTTCAATAACTTTTTAAGTGTAATGAATCATCTGATCTTGGTCACTTATATCATCTGTTTTATATGTGACATTGACCTGTTATGATTGAAAGCTATGATATTAGTTGCAATGTGTCCTGTTAGTGGCCTTGTTTGTTTGCATGTTTAAATAAAGCATTCACATCCCATTGTTTCTTTCCTAGATTTCAATTGTTAACGTCTCTCTATTTTCTCCTGTTCCTTTTAGCTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGCATTGATA</genome_strand>
        <mrna_strand>CTGACAGCGAAAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTGTTAGAAGAAGGTTCATTTGACGCTGTGGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCCGTTACAGACCCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTTGGTTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACATCTTCCATAGCTGCAGTTGCTTATAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTCCTCTCGAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGGATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441114" ref_strand="+" ref_description="SGN-E441114 [cSTA-29-O21]">
      <seq>ctgacagcgttaacagtgtgtgtaacaggagcttcaggttacatagcttcatggctagtcaaattcttgctacatcgtggttatactgtgaaggcttctgttcgtgatccaaatgatcccaagaaaacgcagcacttgctttctcttggtggggccattgagaggcttcacttgatcaaagcaaacctgttagaagaaggttcatttgacgctgtggttgatggatgtgaaggtgtattccatacagcgtctcctttttactactccgttacagacccacaggccgaattacttgatcctgctgttaagggaacactcaatcttcttggttcatgtgccaaagcaccatcagtaaaacgagttgttttaacatcttccatagctgcagttgcttatagtggtcagcctcggacacctgaggttgtggttgatgagagctggtggaccagtccagactactgcaaagaaaaacagctctggtatgtcctctcgaagacattggctgaggatgctgcgtggaagtttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="60081" stop="55688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59782" g_stop="59671" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59670" i_stop="58225" i_length="1446">
            <donor d_prob="0.872" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58224" g_stop="58055" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="282" r_length="170" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58054" i_stop="57019" i_length="1036">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57018" g_stop="56827" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="474" r_length="192" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56826" i_stop="56042" i_length="785">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56041" g_stop="55988" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="528" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E441114" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59782" e_stop="59671"/>
          <exon e_start="58224" e_stop="58055"/>
          <exon e_start="57018" e_stop="56827"/>
          <exon e_start="56041" e_stop="55988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACAGCGAAAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATAGTGGTTACAATGTGAAGGCTTCTGTTCGTGATCCAAGTTTGTACCTTTTTTTTCTCTTTTTATTTTAGGAAAATGTGGGTTTTTTGTGGGTTATTTGGGGTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTGATTTTCTTTTGTGGGTATTGATTCTTGGATTTGGATTTTGAAAAAAAAAGGTGTTTTGTGTGTGTCATGCAGTTCAAATACTTGGAAAATGAGTGTTTTTTTGTGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTGATTTTCTTTTGTGGGTATTGATTCTTGGATTTGAATTTTGAAAAAAAAAATGGTGTTTTTGTGTGTGTCATGTAGTTGATATACTTGGAAAATGAGTGTTTTTTTGTGGGTTATTTGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTTATTTTTTTATGTGGGTATTGATTCTTGGAAAAAAAAAGTGGTACAAAAAAATTGGTTTTTTTGTGTGTCATGATTGGTTTTTTTGTGCGTCATGTAATTGATTTGTTGTACTTTATGATGGTGTTGGGTTGTTTGGATCTTGGAATATTAGGTTATGAAGATCATATGCTTTGATTGTTTGTTGGATTATGTTGATCGTCTTATCTAAAAGCTTAAACTATTAGGGGTTTGTTTGGAATGTGGAATGGTGGTTGTGATTATGGTGGACTGATTTTGCTAGTTCACCATAATCACAACAGATTTTCAATTTGGTATATTAGTGATGTTGTGATTATGGTGAACTGCCTTTGCCATGTAAAGCCACCACTCATGTATTCATTTTCATAGGAAATGAGGAAATCCACCTGGTTGGGCAGAAAAGCAAAATCATCTGCTGAGAGTTCTCATTAAATTAGCCGAATCCCTGCACCCGTATCTGTACCTAGATTCATACCCCCGAATTTTTTTAATTTAGATTATGAAGGATGCGTCCTCTAGATTCATACACTCTTCTTTTTTTAGTTTTTTACTTTGAGACTTTATACTCAATAGATAATCTTTTGACGTCCAGTAAAAATACATCTTAGAGCAAACCAACTCGCAAGCAGTTCCATAGGTTACAGTTAATCAATTAACCACAACTCGCTCTTGAACCAAGTGATATGGTGCCTATGCAGATCCCTTTCTTCCATTATATTGTGTTCTTAGCTATGTCTGTCTTGAATCAAGGGAGATTTTAGATCTTTTGAGACAATCACATCATGTGATAGAGTGTACTTTTCTCTTTTTACCACACTTATCAAATAAATTCAGTGTAGTAAAGAAAAAAAATCATAAGGTTGATCTTGTTTCACTCATCACTGTGACTTAAACTTTCAGCTCTCCGCTTATTTTATAATTTGGACAACAGAAAAACTAGATATTTCATTCTTCGCCCGTGCTATAGGTCATGTTTACTGCTTATGTGTTGAATGCGTTATGATATTTTCGTGCAGATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAGGTTCTTTCCGTTCTTGTAAATCTGATTTTACTTACCTTCATTCTAGGTAGTGTAATGGCAGTTTCTATGTATTGATAAAAGTATTGCGGTCAGCATCTTTATTAGCTTAATATCAAGTAACTTTAGTTATCAATGACAAGTATTCAGATCAGATGACACAAGTGACAAATGAACCATCTGGTACATTAAAGGAGCTAGATGCTATGCTGATGAACCATAACATGAGTCCTGTTTCTTTGAATCAGATACTATACAATTTCCATTTACTCTGCTCCTGGTTATTTTACCATTTGCCTGGCCCGATTTGTATATCTTTCTCTTTCTTTTTGAAGTTTCATTATTCTTTCAAGTTCCTTTTGTATGCTTGGCTGTTTGGTAAATAAATCTAAGACTGTGTAATACGATTGAAAGATGTAACAGTTTAGTTTCAAGATATCCTTTCATCATTGTTACTTCTCCCCTCTTGTAAATTAAGTTAGTTACATCCTACTAGAGTGAAATTCTCAAATTAATATATTAAGTACCTAACTGAAATAGTGTGAGAAAATTTTGAATTATGTCTGTAAGATAATACTCCTTGACAGTTCACTCTCTGCTTTGGCTCAACTCTTGTTTAATGATTATAAAACTATACGGTTATGGTTGGTCGAGGAAAGTTTACAGTGAGCAGGGTTCACCTCCTTAAAGGACAAGTTGCGACAGTGGCTTGAACATCATGAGAGGATAATTAAATTATAGCATACAGCTATTGGAATTACTATTTTCTCATTTCAATGTACTTGATGTGTTATTATGAAGCTTAAGAATTTTGTAATCTTATTTTGGAGTTTGTTTTATGGACTTTAACTAGTTGATATAGTTCAAATTTGGTAGTCACATGAGATTATTCACGTTCTCTAGAAAATGAAATGTGTGGTAGCCATGTTAAAAACCAACATCCGACTTGTTTTCAATGGTACTTAAAGTAAGTTAGCTTGTTTGTCCTTCTAGAGTTGGCTCCCATTTCAAATCAACTCTACATCTCCCCATATTTCAGGCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAGGTGTGCATGTATTTTCTTCTTTCTTTTTGAGCACATTCAAAGACAAATGAAGGTATTGCCCATTGAAATAGCTAGTATTGAGCTAGTCTTACCATTATTGTATGTTTTGTTATATTCGTGGTCAATGTCTCTCTTGACAAATTACAGTGTGATACTGTTGCATAAATGTGGAGCTGGGAAGGCTAGGGATCTACAGAAGTTGTAACAAAATATACGCTGTATCTAAATTTGTGATGAATTAGACGCACTTTGATTAAAATTACTTTTATCATGGTTTTGTATTGGTATGGATGTAAGAAGGACCAGACACATTTCTCTTATTTAATAATATCAACAAGAGCTCATTAACCGCGGTTCTTGACAACATGACTAGCTGATCCAATTTAAAGAATTTCTGAGTGCTTTAGTCACTGCACTATTTCTTATTAATATCATAAGTTTCTATGTTTGCAGTTATGTCAACTTAAGTTTCTGAGGTGTTCATCCAAACACTTCTCTGGTTGGTGTAGTATTAGGAATACACATTTTTCTTGGAGATGTGTGTTTTAAAGCTAGGCAGTTTCAATAACTTTTTAAGTGTAATGAATCATCTGATCTTGGTCACTTATATCATCTGTTTTATATGTGACATTGACCTGTTATGATTGAAAGCTATGATATTAGTTGCAATGTGTCCTGTTAGTGGCCTTGTTTGTTTGCATGTTTAAATAAAGCATTCACATCCCATTGTTTCTTTCCTAGATTTCAATTGTTAACGTCTCTCTATTTTCTCCTGTTCCTTTTAGCTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTG</genome_strand>
        <mrna_strand>CTGACAGCGTTAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCATTGAGAGGCTTCACTTGATCAAAGCAAACCTGTTAGAAGAAGGTTCATTTGACGCTGTGGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCCGTTACAGACCCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTTGGTTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACATCTTCCATAGCTGCAGTTGCTTATAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTCCTCTCGAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438917" ref_strand="+" ref_description="SGN-E438917 [cSTA-10-A10]">
      <seq>cgaaaacagtgtgtgtaacaggagcttcaggttacatagcttcatggctagtcaaattcttgctacatcgtggttacactgtgaaggcttctgttcgtgatccaaatgatcccaagaaaacgcagcacttgctttctcttggtggggccaaggagaggcttcacttgttcaaagcaaacctgttagaagaaggttcatttgacgctgtggttgatggatgtgaaggtgtattccatacagcatctcctttttactactccgttacagacccacaggccgaattacttgatcctgctgttaagggaacactcaatcttcttggttcatgtgccaaagcaccatcagtaaaacgagttgttttaacatcttccatagctgcagttgcttatagtggtcagcctcggacacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="60075" stop="56584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59775" g_stop="59671" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59670" i_stop="58225" i_length="1446">
            <donor d_prob="0.872" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58224" g_stop="58055" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="275" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58054" i_stop="57019" i_length="1036">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57018" g_stop="56884" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="410" r_length="135" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E438917" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59775" e_stop="59671"/>
          <exon e_start="58224" e_stop="58055"/>
          <exon e_start="57018" e_stop="56884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATAGTGGTTACAATGTGAAGGCTTCTGTTCGTGATCCAAGTTTGTACCTTTTTTTTCTCTTTTTATTTTAGGAAAATGTGGGTTTTTTGTGGGTTATTTGGGGTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTGATTTTCTTTTGTGGGTATTGATTCTTGGATTTGGATTTTGAAAAAAAAAGGTGTTTTGTGTGTGTCATGCAGTTCAAATACTTGGAAAATGAGTGTTTTTTTGTGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTGATTTTCTTTTGTGGGTATTGATTCTTGGATTTGAATTTTGAAAAAAAAAATGGTGTTTTTGTGTGTGTCATGTAGTTGATATACTTGGAAAATGAGTGTTTTTTTGTGGGTTATTTGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTTATTTTTTTATGTGGGTATTGATTCTTGGAAAAAAAAAGTGGTACAAAAAAATTGGTTTTTTTGTGTGTCATGATTGGTTTTTTTGTGCGTCATGTAATTGATTTGTTGTACTTTATGATGGTGTTGGGTTGTTTGGATCTTGGAATATTAGGTTATGAAGATCATATGCTTTGATTGTTTGTTGGATTATGTTGATCGTCTTATCTAAAAGCTTAAACTATTAGGGGTTTGTTTGGAATGTGGAATGGTGGTTGTGATTATGGTGGACTGATTTTGCTAGTTCACCATAATCACAACAGATTTTCAATTTGGTATATTAGTGATGTTGTGATTATGGTGAACTGCCTTTGCCATGTAAAGCCACCACTCATGTATTCATTTTCATAGGAAATGAGGAAATCCACCTGGTTGGGCAGAAAAGCAAAATCATCTGCTGAGAGTTCTCATTAAATTAGCCGAATCCCTGCACCCGTATCTGTACCTAGATTCATACCCCCGAATTTTTTTAATTTAGATTATGAAGGATGCGTCCTCTAGATTCATACACTCTTCTTTTTTTAGTTTTTTACTTTGAGACTTTATACTCAATAGATAATCTTTTGACGTCCAGTAAAAATACATCTTAGAGCAAACCAACTCGCAAGCAGTTCCATAGGTTACAGTTAATCAATTAACCACAACTCGCTCTTGAACCAAGTGATATGGTGCCTATGCAGATCCCTTTCTTCCATTATATTGTGTTCTTAGCTATGTCTGTCTTGAATCAAGGGAGATTTTAGATCTTTTGAGACAATCACATCATGTGATAGAGTGTACTTTTCTCTTTTTACCACACTTATCAAATAAATTCAGTGTAGTAAAGAAAAAAAATCATAAGGTTGATCTTGTTTCACTCATCACTGTGACTTAAACTTTCAGCTCTCCGCTTATTTTATAATTTGGACAACAGAAAAACTAGATATTTCATTCTTCGCCCGTGCTATAGGTCATGTTTACTGCTTATGTGTTGAATGCGTTATGATATTTTCGTGCAGATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAGGTTCTTTCCGTTCTTGTAAATCTGATTTTACTTACCTTCATTCTAGGTAGTGTAATGGCAGTTTCTATGTATTGATAAAAGTATTGCGGTCAGCATCTTTATTAGCTTAATATCAAGTAACTTTAGTTATCAATGACAAGTATTCAGATCAGATGACACAAGTGACAAATGAACCATCTGGTACATTAAAGGAGCTAGATGCTATGCTGATGAACCATAACATGAGTCCTGTTTCTTTGAATCAGATACTATACAATTTCCATTTACTCTGCTCCTGGTTATTTTACCATTTGCCTGGCCCGATTTGTATATCTTTCTCTTTCTTTTTGAAGTTTCATTATTCTTTCAAGTTCCTTTTGTATGCTTGGCTGTTTGGTAAATAAATCTAAGACTGTGTAATACGATTGAAAGATGTAACAGTTTAGTTTCAAGATATCCTTTCATCATTGTTACTTCTCCCCTCTTGTAAATTAAGTTAGTTACATCCTACTAGAGTGAAATTCTCAAATTAATATATTAAGTACCTAACTGAAATAGTGTGAGAAAATTTTGAATTATGTCTGTAAGATAATACTCCTTGACAGTTCACTCTCTGCTTTGGCTCAACTCTTGTTTAATGATTATAAAACTATACGGTTATGGTTGGTCGAGGAAAGTTTACAGTGAGCAGGGTTCACCTCCTTAAAGGACAAGTTGCGACAGTGGCTTGAACATCATGAGAGGATAATTAAATTATAGCATACAGCTATTGGAATTACTATTTTCTCATTTCAATGTACTTGATGTGTTATTATGAAGCTTAAGAATTTTGTAATCTTATTTTGGAGTTTGTTTTATGGACTTTAACTAGTTGATATAGTTCAAATTTGGTAGTCACATGAGATTATTCACGTTCTCTAGAAAATGAAATGTGTGGTAGCCATGTTAAAAACCAACATCCGACTTGTTTTCAATGGTACTTAAAGTAAGTTAGCTTGTTTGTCCTTCTAGAGTTGGCTCCCATTTCAAATCAACTCTACATCTCCCCATATTTCAGGCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCT</genome_strand>
        <mrna_strand>CGAAAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATCGTGGTTACACTGTGAAGGCTTCTGTTCGTGATCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTGTTAGAAGAAGGTTCATTTGACGCTGTGGTTGATGGATGTGAAGGTGTATTCCATACAGCATCTCCTTTTTACTACTCCGTTACAGACCCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTTGGTTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACATCTTCCATAGCTGCAGTTGCTTATAGTGGTCAGCCTCGGACACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219351" ref_strand="+" ref_description="SGN-E219351 [cLEL-11-B23](-)">
      <seq>aaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatccatgtgatcttgtgtttggaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="69959" stop="4548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69826" g_stop="69824" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69657" g_stop="69330" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="331" r_length="328" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69329" i_stop="69035" i_length="295">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69034" g_stop="69011" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="355" r_length="24" r_score="0.458"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E219351" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69826" e_stop="69824"/>
          <exon e_start="69657" e_stop="69330"/>
          <exon e_start="69034" e_stop="69011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTACCAGGATGGTTCTGTATGTTTTTCTTCTCTTTTTGATAATGGTGTAACGGTCGACATGGCCGCATTTCAAGTATTTCACGGGATACCTGCTATCTCAACTGGTATCATATTTCACTTGATAACCCCACATTCTCTCAGAGCTATGGGAAAATTTCATGCATAGCCATTCATAAATAGCCTAATTACTCTTCATTACTATAGTTTGATCATTACAATTCATAGCTACATGTTATAGGGAGGAGAGAGATTAGGAGATAAA</genome_strand>
        <mrna_strand>AAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCCATGTGATCTTGTGTTTGGAA.......................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236270" ref_strand="-" ref_description="SGN-E236270 [cLED-20-G23]">
      <seq>tggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaacacctttcgtcctatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatgcggtcgatgtgatcttgtgtttggaggttccaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="70282" stop="4542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69982" g_stop="69824" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69657" g_stop="69321" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="496" r_length="337" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69320" i_stop="69132" i_length="189">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.452" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69131" g_stop="69100" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="528" r_length="32" r_score="0.375"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E236270" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236270" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69982" e_stop="69824"/>
          <exon e_start="69657" e_stop="69321"/>
          <exon e_start="69131" e_stop="69100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTACCAGGATGGTTCTGTATGTTTTTCTTCTCTTTTTGATAATGGTGTAACGGTCGACATGGCCGCATTTCAAGTATTTCACGGGATACCTGCTATCTCAACTGGTATCATATTTCACTTGATAACCCCACATTCTCTCAGAGCTATGGGAAAATTTCATGCATAGCCATTCA</genome_strand>
        <mrna_strand>TGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAACACCTTTCGTCCTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATGCGGTCGATGTGATCTTGTGTTTGGAGGTTCCAAAA.............................................................................................................................................................................................AAAAAAAAAAAAAAAAACTCGAGACTAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243476" ref_strand="-" ref_description="SGN-E243476 [cLED-34-H11]">
      <seq>ggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcgatgtgatcttgtgtttggaggttacaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="70215" stop="4542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69915" g_stop="69824" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69657" g_stop="69317" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="433" r_length="341" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69316" i_stop="69132" i_length="185">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.452" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69131" g_stop="69102" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="463" r_length="30" r_score="0.433"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E243476" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243476" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69915" e_stop="69824"/>
          <exon e_start="69657" e_stop="69317"/>
          <exon e_start="69131" e_stop="69102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTACCAGGATGGTTCTGTATGTTTTTCTTCTCTTTTTGATAATGGTGTAACGGTCGACATGGCCGCATTTCAAGTATTTCACGGGATACCTGCTATCTCAACTGGTATCATATTTCACTTGATAACCCCACATTCTCTCAGAGCTATGGGAAAATTTCATGCATAGCCATT</genome_strand>
        <mrna_strand>GGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAAAAAAA.........................................................................................................................................................................................AAAAAAAAAAAAAACTCGAGACTAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215606" ref_strand="+" ref_description="SGN-E215606 [cLEL-15-G19](-)">
      <seq>ctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcaagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcgatgtgatcttgtgtttggaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="70220" stop="4548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69920" g_stop="69824" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69657" g_stop="69323" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="432" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69322" i_stop="69132" i_length="191">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.452" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69131" g_stop="69117" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="447" r_length="15" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E215606" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69920" e_stop="69824"/>
          <exon e_start="69657" e_stop="69323"/>
          <exon e_start="69131" e_stop="69117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTACCAGGATGGTTCTGTATGTTTTTCTTCTCTTTTTGATAATGGTGTAACGGTCGACATGGCCGCATTTCAAGTATTTCACGGGATACCTGCTATCTCAACTGGTATCATATTTCACTTGATAACCCCACATTCTCTCAGAGCTATGGGAAAATT</genome_strand>
        <mrna_strand>CTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCAAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTAAAA...............................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350135" ref_strand="+" ref_description="SGN-E350135 [cTOS-4-A19]">
      <seq>tgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcgatgtgatcttgtgtttggaggttacaagtgtttgtgcatttggttttggcttgttgtttatgttatgtgcaagatctgtacccaggatggtctgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="70578" stop="68954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70278" g_stop="70145" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70010" g_stop="69824" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="321" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69657" g_stop="69244" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="735" r_length="414" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E350135" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70278" e_stop="70145"/>
          <exon e_start="70010" e_stop="69824"/>
          <exon e_start="69657" e_stop="69244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTA-CCAGGATGGTTCTGTATGTTTTTCTT</genome_strand>
        <mrna_strand>TGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTACCCAGGATGG-TCTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552004" ref_strand="+" ref_description="SGN-E552004 [cTSB-2-I21]">
      <seq>agttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcgatgtgatcttgtgtttggaggttacaagtgtttgtgcatttggttttggcttggtgtttatgttatgtgcaagatctgtaccaggatggttctgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="71114" stop="68954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70814" g_stop="70727" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="251" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70010" g_stop="69824" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="438" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69657" g_stop="69245" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="851" r_length="413" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E552004" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70814" e_stop="70727"/>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69824"/>
          <exon e_start="69657" e_stop="69245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTACCAGGATGGTTCTGTATGTTTTTCT</genome_strand>
        <mrna_strand>AGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGGTGTTTATGTTATGTGCAAGATCTGTACCAGGATGGTTCTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356180" ref_strand="+" ref_description="SGN-E356180 [cTOS-20-K12]">
      <seq>agaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcgatgtgatcttgtgtttggaggttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="70614" stop="69023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="173" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70010" g_stop="69824" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="360" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69657" g_stop="69312" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="706" r_length="346" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E356180" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69824"/>
          <exon e_start="69657" e_stop="69312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCA</genome_strand>
        <mrna_strand>CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352238" ref_strand="+" ref_description="SGN-E352238 [cTOS-13-P1]">
      <seq>agaatccagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaactttccgtggatgtagttgaatcaaagatacgatcgatgtgatcttngtgtttggaggttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="70611" stop="69023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="172" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70010" g_stop="69824" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="359" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69657" g_stop="69319" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="699" r_length="340" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E352238" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69824"/>
          <exon e_start="69657" e_stop="69319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTT-GTGTTTGGAGGTTACAAGTGT</genome_strand>
        <mrna_strand>CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACTTTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTNGTGTTTGGAGGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219107" ref_strand="+" ref_description="SGN-E219107 [cLEL-11-B24](-)">
      <seq>tagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagaaaaaaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcaatgtgatcttgtgtttggaaaaaccaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="69913" stop="69031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69613" g_stop="69334" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="293" polyA_stop="308"/>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E219107" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69613" e_stop="69334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTT</genome_strand>
        <mrna_strand>TAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAAAAAAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCAATGTGATCTTGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745501" ref_strand="+" ref_description="SGN-E745501 [GI|47105287]">
      <seq>gaggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatgaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73104" stop="69084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72805" g_stop="72660" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="316" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="508" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="671" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70010" g_stop="69824" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="858" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69657" g_stop="69385" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="1131" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1132" polyA_stop="1147"/>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E745501" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1131</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72805" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69824"/>
          <exon e_start="69657" e_stop="69385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAAC</genome_strand>
        <mrna_strand>GAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342141" ref_strand="+" ref_description="SGN-E342141 [cTOF-10-K14]">
      <seq>atgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagaaaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgtttttgtgatccgcaactttaatgggtgtcggttaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="71181" stop="69090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70881" g_stop="70727" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="318" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70010" g_stop="69824" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="505" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69657" g_stop="69390" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="776" r_length="271" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E342141" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70881" e_stop="70727"/>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69824"/>
          <exon e_start="69657" e_stop="69390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCG-TTTTGTGATCCGCAACTTTAAT-GGTGTC-GTTAAGTT</genome_strand>
        <mrna_strand>ATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAAAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTTGTGATCCGCAACTTTAATGGGTGTCGGTTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266462" ref_strand="+" ref_description="SGN-E266462 [cLEI-3-N6]">
      <seq>aagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="71093" stop="69238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70793" g_stop="70727" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="230" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70010" g_stop="69824" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="417" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69657" g_stop="69538" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="537" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E266462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70793" e_stop="70727"/>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69824"/>
          <exon e_start="69657" e_stop="69538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAA</genome_strand>
        <mrna_strand>AAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466900" ref_strand="+" ref_description="SGN-E466900 [cPRO-26-M22]">
      <seq>ttcgcttgttcaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccatggagtcaaggatccacaggcggagttgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttaggagagtggttttgacatcatctgttgctgcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcagtttgttgcaaccaacacttaatacaagtgctgctgccatcttacaattgctaaatggttctgaaacatacccaaattctacacttggttgggttaatgtgaaagatgttgccctcgcgcatattctggcttttgaaaacccttcagctaatggtagatatttgatggtggagtcagttgcacactactctgagatagtaaagatattgcgcgagctttaccctacaatgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgttgaaagatccaaaaaattgggtattgaattcattcccttggctgaaagcctcaaggaaactgctgaaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="71891" stop="69241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71591" g_stop="71476" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="307" r_length="192" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="470" r_length="163" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70010" g_stop="69824" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="657" r_length="187" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69657" g_stop="69541" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="774" r_length="117" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E466900" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71591" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69824"/>
          <exon e_start="69657" e_stop="69541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTT</genome_strand>
        <mrna_strand>TTCGCTTGTTC-AAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCATGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGTTGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGGAGAGTGGTTTTGACATCATCTGTTGCTGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCAGTTTGTTGCAACCAACACTTAATACAAGTGCTGCTGCCATCTTACAATTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACACTTGGTTGGGTTAATGTGAAAGATGTTGCCCTCGCGCATATTCTGGCTTTTGAAAACCCTTCAGCTAATGGTAGATATTTGATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTAAAGATATTGCGCGAGCTTTACCCTACAATGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTTGAAAGATCCAAAAAATTGGGTATTGAATTCATTCCCTTGGCTGAAAGCCTCAAGGAAACTGCTGAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729745" ref_strand="+" ref_description="SGN-E729745 [LA21DH07]">
      <seq>aaagaaagagagagctcacaaaaatggcgatgaaaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgccagctttaccctacactgaaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggctaaccgtacaaagagccaaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73094" stop="69295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72794" g_stop="72660" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="305" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="497" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="660" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70010" g_stop="69824" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="848" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69657" g_stop="69595" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="849" r_stop="912" r_length="64" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E729745" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72794" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69824"/>
          <exon e_start="69657" e_stop="69595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTG-AAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAA-CGTAGAAAGAGCCAAAAAATT</genome_strand>
        <mrna_strand>AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAAAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCCAGCTTTACCCTACACTGAAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGCTAACCGTACAAAGAGCCAAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345295" ref_strand="+" ref_description="SGN-E345295 [cTOF-13-F6]">
      <seq>tgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="71830" stop="69334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71530" g_stop="71476" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="247" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="410" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70010" g_stop="69824" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="597" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69657" g_stop="69634" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="621" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E345295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71530" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69824"/>
          <exon e_start="69657" e_stop="69634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTAC</genome_strand>
        <mrna_strand>TGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238257" ref_strand="+" ref_description="SGN-E238257 [cLED-22-D24]">
      <seq>gaattcggcacgaggttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaggagaaagctttcgatatggttacaataaacccagcagtggttataggcggattgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgctgcccttgcacatatcctggcatttgaaaaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="71175" stop="69625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70881" g_stop="70727" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="318" r_length="163" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70010" g_stop="69925" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="404" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E238257" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70881" e_stop="70727"/>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCT</genome_strand>
        <mrna_strand>GAATTCGGCACGAGGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAGTGGTTATAGGCGGATTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGCTGCCCTTGCACATATCCTGGCATTTGAAAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297788" ref_strand="+" ref_description="SGN-E297788 [cLET-38-O18]">
      <seq>tggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcccccttgcacatattctggcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="71912" stop="69633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71612" g_stop="71476" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="329" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="492" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70010" g_stop="69933" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="570" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E297788" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71612" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTG</genome_strand>
        <mrna_strand>TGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCCCCCTTGCACATATTCTGGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328443" ref_strand="+" ref_description="SGN-E328443 [cTOC-21-D22]">
      <seq>tcttttgtcggcttttacaccactcagtcttctacacagagtgctgttaggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaccaacgcttaaatacagtgctgctgctatcttacaactggctaatgggtctgaaacatacccaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73152" stop="69688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72852" g_stop="72660" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="363" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="555" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="717" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="0.84"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70010" g_stop="69988" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="740" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E328443" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72852" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCT</genome_strand>
        <mrna_strand>TCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGC-ACCAACGCTTAAATACAGTGCTGCTGCTATCTTACAACTGGCTAATG......................................................................................................................................GGTCTGAAACATACCCAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346643" ref_strand="+" ref_description="SGN-E346643 [cTOF-28-C1]">
      <seq>tttttgcttcagcgtggttatactgttaaagccactgttcgcgatctcaaatgatcaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcgggnttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatgggtctgaaacatacccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73008" stop="69691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72708" g_stop="72660" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="220" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="412" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70307" g_stop="70145" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="576" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70010" g_stop="69991" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="596" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E346643" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72708" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70145"/>
          <exon e_start="70010" e_stop="69991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGA-TGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGG-AAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGC-GGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAAT</genome_strand>
        <mrna_strand>TTTTTGCTTCAGCGTGGTTATACTGTTAAAGCCACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATC-AAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGGNTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GGTCTGAAACATACCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292398" ref_strand="+" ref_description="SGN-E292398 [cLET-1-J3]">
      <seq>tgctgttaggtgaaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatgaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattanctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73111" stop="69903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72811" g_stop="72660" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="323" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="515" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70307" g_stop="70203" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="620" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E292398" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72811" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTAGGTGAAAAA-AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGC</genome_strand>
        <mrna_strand>TGCTGTTAGGTGAAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTANCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326551" ref_strand="+" ref_description="SGN-E326551 [cTOC-17-J11]">
      <seq>ctcgtgccgcttttgtcggcttttacaccactcagtcttctacacagagtgctgttaggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatgggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73153" stop="69913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72860" g_stop="72660" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="371" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="564" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70307" g_stop="70213" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="659" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E326551" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72860" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATATCTCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACAT-GGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAAT</genome_strand>
        <mrna_strand>CTCGTGCCGCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585405" ref_strand="+" ref_description="SGN-E585405 [67864]">
      <seq>gctgttaggtgaaaatagatagagagagctcaaaaaaatggcgacgaaaacagtgtgtgtaacaggagcttcaggctacatagcttcatggctagtcaaattcttgcttcagcgtggttatactgtcaaagccactgttcgcgatcccaatgataaaaaaaagacagatcacttgacatcccttgatggagctaaggagagactccacttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttggagtcaaggatccacaggcggagttgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttagaagagtggttttgacatcatctattgctgcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacctggtggtcagatcctgacttttgcagagaatcacagaactggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttaccataaaccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73110" stop="69916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72810" g_stop="72660" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="319" r_length="170" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="511" r_length="192" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70307" g_stop="70216" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="603" r_length="92" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E585405" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72810" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGC</genome_strand>
        <mrna_strand>GCTGTTAGGTG--AAAATAGATAGAGAGAGCTCAAAAAAATGGCGACGAAAACAGTGTGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTCTTGCTTCAGCGTGGTTATACTGTCAAAGCCACTGTTCGCGATCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGACAGATCACTTGACATCCCTTGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGTTGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGAAGAGTGGTTTTGACATCATCTATTGCTGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACCTGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACCATAAACCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279451" ref_strand="+" ref_description="SGN-E279451 [cLER-11-J14]">
      <seq>aagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatgaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73089" stop="69935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72789" g_stop="72660" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="300" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="492" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70307" g_stop="70235" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="565" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E279451" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72789" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATA</genome_strand>
        <mrna_strand>AAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289508" ref_strand="+" ref_description="SGN-E289508 [cLET-3-K11]">
      <seq>aaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatgaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73090" stop="69938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72790" g_stop="72660" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="301" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="493" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70307" g_stop="70238" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="563" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E289508" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72790" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCG</genome_strand>
        <mrna_strand>AAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337348" ref_strand="+" ref_description="SGN-E337348 [cTOE-18-I10]">
      <seq>tcagtcttctacacagagtgctgttaggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73129" stop="69952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72829" g_stop="72660" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="340" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="532" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70307" g_stop="70252" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="588" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E337348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72829" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAA</genome_strand>
        <mrna_strand>TCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465240" ref_strand="+" ref_description="SGN-E465240 [cPRO-20-D3]">
      <seq>tccgcttgttcaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccatggagtcaaggatccacaggcggagttgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttaggagagtggttttgacatcatctgttgctgcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="71891" stop="69952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71591" g_stop="71476" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="307" r_length="192" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70307" g_stop="70252" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="363" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E465240" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71591" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAA</genome_strand>
        <mrna_strand>TCCGCTTGTTC-AAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCATGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGTTGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGGAGAGTGGTTTTGACATCATCTGTTGCTGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329573" ref_strand="+" ref_description="SGN-E329573 [cTOD-11-N17]">
      <seq>aaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73090" stop="69992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72790" g_stop="72660" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="301" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="493" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70307" g_stop="70292" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="509" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E329573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72790" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
          <exon e_start="70307" e_stop="70292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTT</genome_strand>
        <mrna_strand>AAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288582" ref_strand="+" ref_description="SGN-E288582 [cLES-8-N9]">
      <seq>ggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73044" stop="70417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72744" g_stop="72660" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="255" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70727" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="447" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E288582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72744" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG</genome_strand>
        <mrna_strand>GGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366110" ref_strand="+" ref_description="SGN-E366110 [cLPT-15-G24]">
      <seq>aaagatagatagagctcacaaaaatggcgatgaaaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctacttgaagaaggttcatttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73094" stop="70451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72794" g_stop="72660" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="305" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70751" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="473" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E366110" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72794" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGAT</genome_strand>
        <mrna_strand>AAAGATAGATAGAGCTCACAAAAATGGCGATGAAAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTTGAAGAAGGTTCATTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305523" ref_strand="+" ref_description="SGN-E305523 [cLEX-15-P22]">
      <seq>gagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacaacatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcacttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73088" stop="70463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72789" g_stop="72660" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="300" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70763" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="456" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E305523" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72789" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACA</genome_strand>
        <mrna_strand>GAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAACATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCACTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440113" ref_strand="+" ref_description="SGN-E440113 [cSTA-15-G5]">
      <seq>gttttgtgaaaatagatagagagctcacaaaaatggcgacgaaaacagtgtgtgtaactggaggttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgtcaaagccaccgttcgcgatcccaatgataaaaaaaaggtagatcacttaacatcccttgatggagctaaggagagactccacttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttggagtcaaggatccacagacggagatgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttagaagagtggttttgacatcatctattgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73095" stop="70471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72803" g_stop="72660" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="314" r_length="170" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70771" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="462" r_length="148" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E440113" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72803" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTG</genome_strand>
        <mrna_strand>GTTTTGTGAAAATAGATAGAGAGCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACTGGAGGTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTCAAAGCCACCGTTCGCGATCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGGTAGATCACTTAACATCCCTTGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGAAGAGTGGTTTTGACATCATCTATTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472780" ref_strand="+" ref_description="SGN-E472780 [cSTB-29-L12]">
      <seq>gtgtgttgttaggtggaaattgatagagagagctcacaaaaatggcgacgaaaacagtgtgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagccactgttcgcgatcccaatgataaaaaaaagacagatcacttgacatcccttgatggagctaaggagagactccgcttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccatggagtcaaggatccacaggcggagttgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttaggagagtggttttgacatcatctgttgctgcagttgctttcaatggcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73096" stop="70496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72814" g_stop="72660" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="323" r_length="170" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70796" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="446" r_length="123" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E472780" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72814" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAG</genome_strand>
        <mrna_strand>GTGTGTTGTTAGGTG-GA-AATTGATAGAGAGAGCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCCACTGTTCGCGATCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGACAGATCACTTGACATCCCTTGATGGAGCTAAGGAGAGACTCCGCTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCATGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGTTGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGGAGAGTGGTTTTGACATCATCTGTTGCTGCAGTTGCTTTCAATGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338104" ref_strand="+" ref_description="SGN-E338104 [cTOE-13-K7]">
      <seq>aaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73094" stop="70499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72794" g_stop="72660" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="305" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70799" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="425" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E338104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72794" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGC</genome_strand>
        <mrna_strand>AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404069" ref_strand="+" ref_description="SGN-E404069 [PPC-12-H7]">
      <seq>gtgaaaatagatagagacctcacaaaaatggcgacgaaaacagtgtgtgtaactggatcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgtcaaagccactgttcgcgatccaaatgataaaaaaaaggtagatcacttaacatcccttgatggagctaaggagagactccacttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttgaagtcaaggatccagagacggagatgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttagaagagtgggtttgacatcatctgttgcgtcagttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73095" stop="70507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72798" g_stop="72660" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="309" r_length="170" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70807" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="421" r_length="112" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E404069" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72798" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTT</genome_strand>
        <mrna_strand>GTGAAAATAGATAGAGACCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACTGGATCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTCAAAGCCACTGTTCGCGATCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGGTAGATCACTTAACATCCCTTGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGAAGTCAAGGATCCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGAAGAGTGGGTTTGACATCATCTGTTGCGTCAGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470211" ref_strand="+" ref_description="SGN-E470211 [cSTB-17-G16]">
      <seq>agagagctcacaaaaatggcgacgaaaacagtgtgtgtaactggaggttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgtcaaagccaccgttcgcgatcccaatgataaaaaaaaggtagatcacttaacatcccttgatggagctaaggagagactccacttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttggagtcaaggatccacagacggagatgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttagaagagtggttttgacatcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73086" stop="70523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72786" g_stop="72660" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="297" r_length="170" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70822" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="394" r_length="97" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E470211" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72786" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTG</genome_strand>
        <mrna_strand>AGAGAGCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACTGGAGGTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTCAAAGCCACCGTTCGCGATCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGGTAGATCACTTAACATCCCTTGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGAAGAGTGGTTTTGACATCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468351" ref_strand="+" ref_description="SGN-E468351 [cSTB-3-K18]">
      <seq>cacagagtgtgttgttaggtggaaattgatagagagagctcacaaaaatggcgacgaaaacagtgtgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagccactgttcgcgatcccaatgataaaaaaaagacagatcacttgacatcccttgatggagctaaagagagactccgcttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccatggagtcaaggatccacaggcggagttgattgatcctgcactgaaggggacacttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73096" stop="70580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72820" g_stop="72660" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="329" r_length="170" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70880" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="368" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E468351" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72820" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAAT</genome_strand>
        <mrna_strand>CACAGAGTGTGTTGTTAGGTG-GA-AATTGATAGAGAGAGCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCCACTGTTCGCGATCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGACAGATCACTTGACATCCCTTGATGGAGCTAAAGAGAGACTCCGCTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCATGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGTTGATTGATCCTGCACTGAAGGGGACACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477077" ref_strand="+" ref_description="SGN-E477077 [cSTB-47-K23]">
      <seq>cacagagtgtgttgttaggtggaaattgatagagagagctcagaaaaatggcgacgaaaacagtgtgtgtaactggaggttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagccactgttcgcgatcccaatgataaaaaaaagacagatcacttgacatcccttgatggagctaaggagagactgcgcttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttggagtcaaggatccacaggcggagatgattgatcctgctctgaaggggacacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73096" stop="70581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72820" g_stop="72660" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="329" r_length="170" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70881" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="367" r_length="38" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E477077" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72820" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAA</genome_strand>
        <mrna_strand>CACAGAGTGTGTTGTTAGGTG-GA-AATTGATAGAGAGAGCTCAGAAAAATGGCGACGAAAACAGTGTGTGTAACTGGAGGTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCCACTGTTCGCGATCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGACAGATCACTTGACATCCCTTGATGGAGCTAAGGAGAGACTGCGCTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATGATTGATCCTGCTCTGAAGGGGACACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298956" ref_strand="+" ref_description="SGN-E298956 [cLET-42-G6]">
      <seq>tgctgttaggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatgaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctactttttaccttggagtcaaggatccacaggtggagatgattgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73111" stop="70602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72811" g_stop="72660" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="322" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70918" g_stop="70902" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="339" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E298956" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72811" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
          <exon e_start="70918" e_stop="70902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCC</genome_strand>
        <mrna_strand>TGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTACTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559861" ref_strand="+" ref_description="SGN-E559861 [19425]">
      <seq>tacacagagtctgctgtaaggtgaaaatagatagagagctcacaaaaatggcgacgaaaacagtgtgtgtaactggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgtcaaagccactgttcgcgatcccaatgataaaaaaaagacagatcacttgacatcccttgatggagccaaggagagactccacttgttcaaagcaaacctgctggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttggagtcaaggatccacagacggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73095" stop="71176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72822" g_stop="72660" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71476" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="329" r_length="170" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E559861" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72822" e_stop="72660"/>
          <exon e_start="71645" e_stop="71476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG</genome_strand>
        <mrna_strand>TACACAGAGTCTGCTGTAAGGTG-AAAATA-GATAGAGA--GCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACTGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTCAAAGCCACTGTTCGCGATCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGACAGATCACTTGACATCCCTTGATGGAGCCAAGGAGAGACTCCACTTGTTCAAAGCAAACCTGCTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249645" ref_strand="+" ref_description="SGN-E249645 [cLEF-56-D3]">
      <seq>taggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73105" stop="71217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72805" g_stop="72660" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71517" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="275" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E249645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72805" e_stop="72660"/>
          <exon e_start="71645" e_stop="71517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTC</genome_strand>
        <mrna_strand>TAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323916" ref_strand="+" ref_description="SGN-E323916 [cTOC-3-M15]">
      <seq>gagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="73085" stop="71246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72785" g_stop="72660" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71645" g_stop="71546" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="226" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E323916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72785" e_stop="72660"/>
          <exon e_start="71645" e_stop="71546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGC</genome_strand>
        <mrna_strand>GAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391524" ref_strand="+" ref_description="SGN-E391524 [TUS-16-G1](-)">
      <seq>gttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggcaacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacggagcatacatgaaggtcttcactggaatttgaggaagacgcaatcttttgatggccctcgtgagacgtgatcatctttactaaccatttatctggtaaggaaatgagaggttttccgaatatgacttgtttcgaagcagagagatcttgatacatatatacacctatatatatatataagttcaaatgtagaactaactatgaggatgatgagtctcaactttaggtgctttattgttgtttttaacttagacatataattacaataataagaatatagaaggaagtttataccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80380" stop="66619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80080" g_stop="79985" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79581" g_stop="79048" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="630" r_length="534" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79047" i_stop="78798" i_length="250">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78797" g_stop="78785" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="643" r_length="13" r_score="0.462"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E391524" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80080" e_stop="79985"/>
          <exon e_start="79581" e_stop="79048"/>
          <exon e_start="78797" e_stop="78785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCATTTTTTTTGTTTAGTTATTTTTATGCGAAATTTTCGCGTATCGACAGGTGAGTGATAAAAAGATCTATGGGAAGGAATTAGCATACTGACTCGCTTTCATCCTTCGTGTTCAGGGGCGTAGCTATGTTATAGTCAGTGTGTACAATTAGACACCTTTTGTTGAGAAGTATCGTATACATAAGTAAAATGATACATGAAGTGATTAAATAACATAATTTGAATACCTTTCGTGAATCTCTCCTTTTGACAGAATCTCATTAACA</genome_strand>
        <mrna_strand>GTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTTTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCA..........................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376903" ref_strand="+" ref_description="SGN-E376903 [TUS-19-N1](-)">
      <seq>tttcatcatttttaacaaatctaaaatgctattccgataattcttttgttacttgggtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggcaacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacggagcatacatgaaggtcttcactggaatttgaggaagacgcaatcttttgatggccctcgtgagacgtgatcatctctactaaccatttatctggtaaggaaatgagaggttttccgaatatgacttgtttcgaagcagagagatcttgatacatatatacccctatatatatatataagttcaaatgtagaactaactatgaggatgatgagtctcaactttaggtgctttattgttgtttttaacttagacatataattacaataataagaatatagaaggaagtttataccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80427" stop="66617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80127" g_stop="79985" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79581" g_stop="79051" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="674" r_length="531" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79050" i_stop="79001" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79000" g_stop="78974" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="701" r_length="27" r_score="0.407"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E376903" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80127" e_stop="79985"/>
          <exon e_start="79581" e_stop="79051"/>
          <exon e_start="79000" e_stop="78974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCATTTTTTTTGTTTAGTTATTTTTATGCGAAATTTTCGCGTATCGACAGGTGAGTGATAAAAAGATCTATGGGAAG</genome_strand>
        <mrna_strand>TTTCATCATTTTTAACAAATCTAAAATGCTATTCCGATAATTCTTTTGTTACTTGGGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACCCCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATA..................................................CCAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597920" ref_strand="+" ref_description="SGN-E597920 [73586]">
      <seq>gtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacctgcgtacaaggggatggcttaattttgtcgacaacatctggaagcactgcatattctcttgcagctggaggatcaatggtccatcctcaggttcctggcatcctctttacacctatctgcccacattctttatcctttcgtcctctcattttgcccgagtatgtgacaatccgagtacaagtacctttcaacagtagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggctacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacgtagcatacacgaaggtcttcactggaatttgaggaagacgcagtcttttgatggccctcgtgagacatgatcatctgtactaaccgtttatctgataaggaaatgagaggttttccgaatatgtcttatttcaaagcagagagatcatgatacatatatacacctatatatatataagttcaaatgtagacttaactatgaggatgatgagtctcaactttaggtgctttatggtgttgtaacttagacatataatcataataataagaatatagaaggaagtttgtaccaaaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80475" stop="78748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80175" g_stop="79985" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.842" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79581" g_stop="79042" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="727" r_length="536" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E597920" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80175" e_stop="79985"/>
          <exon e_start="79581" e_stop="79042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCATTTTTT</genome_strand>
        <mrna_strand>GTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACCTGCGTACAAGGGGATGGCTTAATTTTGTCGACAACATCTGGAAGCACTGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGTCCTCTCATTTTGCCCGAGTATGTGACAATCCGAGTACAAGTACCTTTCAACAGTAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCTACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGTAGCATACACGAAGGTCTTCACTGGAATTTGAGGAAGACGCAGTCTTTTGATGGCCCTCGTGAGACATGATCATCTGTACTAACCGTTTATCTGATAAGGAAATGAGAGGTTTTCCGAATATGTCTTATTTCAAAGCAGAGAGATCATGATACATATATACACC--TATATATATATAAGTTCAAATGTAGACTTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTA-TGGTG-TTGTAACTTAGACATATAATCATAATAATAAGAATATAGAAGGAAGTTTGTACCAAAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553629" ref_strand="-" ref_description="SGN-E553629 [cTSC-1-L2]">
      <seq>acaaggaatatctcgattcaattcttcgtggtcccataagcataacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggcaacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacggagcatacatgaaggtcttcactggaatttgaggaagacgcaatcttttgatggccctcgtgagacgtgatcatctctactaaccatttatctggtaaggaaatgagaggttttccgaatatgacttgtttcgaagcagagagatcttgatacatatatacacctatatatatatataagttcaaatgtagaactaactatgaggatgatgagtctcaactttaggtgctttattgttgtttttaacttagacatataattacaataataagaatatagaaggaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80580" stop="78754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80280" g_stop="79985" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79581" g_stop="79054" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="824" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E553629" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553629" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80280" e_stop="79985"/>
          <exon e_start="79581" e_stop="79054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTT</genome_strand>
        <mrna_strand>ACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATAACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415292" ref_strand="+" ref_description="SGN-E415292 [STM-21-G13]">
      <seq>aacttccttctatatttttattattatgattatatgtctaagttacaaacaacaataaagcacctaaagttgagactcatcatcctcatagttaattctacatttgaacttatatatatataggtgtatatatgtatcatgatccctctgcttcgaaacaagacatattcggaaaacctctcatttccttatcagataaacggttagaacatatgatcatgtctctcgagggccatcaaaagattgcgtcttcctcaaattccagtgaagaccttcgtgtatgctgcgtaaaaagtcactggtggaatcagcttgacatgcagttggtacaggccaagtagccattgctacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="+" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="78755" stop="79709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79055" g_stop="79409" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="+" ref_id="SGN-E415292" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79055" e_stop="79409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCCTTCTATATTCTTATTATTGTAATTATATGTCTAAGTTAAAAACAACAATAAAGCACCTAAAGTTGAGACTCATCATCCTCATAGTTAGTTCTACATTTGAACTTATATATATATATAGGTGTATATATGTATCAAGATCTCTCTGCTTCGAAACAAGTCATATTCGGAAAACCTCTCATTTCCTTACCAGATAAATGGTTAGTAGAGATGATCACGTCTCACGAGGGCCATCAAAAGATTGCGTCTTCCTCAAATTCCAGTGAAGACCTTCATGTATGCTCCGTAAAAAGTCACTGGTGGAATCAGCTTGACATGCAGTTGGTACAGGCCAAGTTGCCA-TGCTACAAA</genome_strand>
        <mrna_strand>AACTTCCTTCTATATTTTTATTATTATGATTATATGTCTAAGTTACAAACAACAATAAAGCACCTAAAGTTGAGACTCATCATCCTCATAGTTAATTCTACATTTGAACTTATATATATAT--AGGTGTATATATGTATCATGATCCCTCTGCTTCGAAACAAGACATATTCGGAAAACCTCTCATTTCCTTATCAGATAAACGGTTAGAACATATGATCATGTCTCTCGAGGGCCATCAAAAGATTGCGTCTTCCTCAAATTCCAGTGAAGACCTTCGTGTATGCTGCGTAAAAAGTCACTGGTGGAATCAGCTTGACATGCAGTTGGTACAGGCCAAGTAGCCATTGCTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376904" ref_strand="+" ref_description="SGN-E376904 [TUS-19-N1]">
      <seq>ttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggcaacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacggagcatacatgaaggtcttcactggaatttgaggaagacgcaatcttttgatggccctcgtgagacgtgatcatctctactaaccatttatcttgtaaggaaatgagaggtttttcgaatatgacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80556" stop="78914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80256" g_stop="79985" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79581" g_stop="79214" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="640" r_length="368" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E376904" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80256" e_stop="79985"/>
          <exon e_start="79581" e_stop="79214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGT</genome_strand>
        <mrna_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTTGTAAGGAAATGAGAGGTTTTTCGAATATGACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232956" ref_strand="+" ref_description="SGN-E232956 [cLED-6-A24]">
      <seq>ttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggcaacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacggagcatacatgaaggtcttcactggaatttgaggaagacgcaatcttttgatggccctcgtgagacgtgatcatctctactaaccatttatctggtaaggaaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80556" stop="78936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80256" g_stop="79985" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79581" g_stop="79236" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="618" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E232956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80256" e_stop="79985"/>
          <exon e_start="79581" e_stop="79236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAG</genome_strand>
        <mrna_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241387" ref_strand="+" ref_description="SGN-E241387 [cLED-28-L5]">
      <seq>caaaggtccagttcctccggttgttccattttctttaggttctcttggcttcatgaccccgttttatagtgagcgttacaaggaatatctcgattcaattcttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80859" stop="79100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80559" g_stop="80495" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80494" i_stop="80293" i_length="202">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80292" g_stop="79985" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="373" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79581" g_stop="79400" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="555" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E241387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80559" e_stop="80495"/>
          <exon e_start="80292" e_stop="79985"/>
          <exon e_start="79581" e_stop="79400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAAAGATTTTCGTTCATATATGTGGTATACGTAGGCTACAATGTGCTACTCTAATTACATCATTACATGGAAATAAAAGAAATGAAACCGAACTCCTATCGATAGATATATAAACCTGTCTTTAAAACATACAACACAGAAGCATGATTATTACTCTTCTCTGTTTAGCTTTAACATTTCCAGATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCAT</genome_strand>
        <mrna_strand>CAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT..........................................................................................................................................................................................................ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203626" ref_strand="+" ref_description="SGN-E203626 [cLEC-15-D24]">
      <seq>tccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgcgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80520" stop="79101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80220" g_stop="79985" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79581" g_stop="79401" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="417" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E203626" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80220" e_stop="79985"/>
          <exon e_start="79581" e_stop="79401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCA</genome_strand>
        <mrna_strand>TCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGCGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205099" ref_strand="+" ref_description="SGN-E205099 [cLEC-16-I5]">
      <seq>tccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80520" stop="79113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80220" g_stop="79985" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79581" g_stop="79413" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="405" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E205099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80220" e_stop="79985"/>
          <exon e_start="79581" e_stop="79413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCC</genome_strand>
        <mrna_strand>TCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240235" ref_strand="+" ref_description="SGN-E240235 [cLED-25-D13]">
      <seq>ttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80556" stop="79118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80256" g_stop="79985" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79581" g_stop="79418" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="436" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E240235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80256" e_stop="79985"/>
          <exon e_start="79581" e_stop="79418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGA</genome_strand>
        <mrna_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241806" ref_strand="+" ref_description="SGN-E241806 [cLED-27-E3]">
      <seq>cctttgggcagcttcaatgttcaaaggtccagttcctccggttgttccattttctttaggttctcttggcttcatgaccccgttttatagtgagcgttacaaggaatatctcgattcaattcttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcgtattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacaccgatctgcccacattgtgtatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80874" stop="79126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80696" g_stop="80690" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80689" i_stop="80574" i_length="116">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80573" g_stop="80495" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80494" i_stop="80293" i_length="202">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80292" g_stop="79985" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="394" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.842" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79581" g_stop="79426" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="550" r_length="156" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E241806" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80696" e_stop="80690"/>
          <exon e_start="80573" e_stop="80495"/>
          <exon e_start="80292" e_stop="79985"/>
          <exon e_start="79581" e_stop="79426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGGGTACGTAGCTAGTTTTGTCTTTTTCTTAACTAGAATTTTATATTCTACCATGTGGTTTTGATAAACATTTCATGGCGGGAGAGTGCTTAATAATTGCAACATATTTTATATTGCAGGCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAAAGATTTTCGTTCATATATGTGGTATACGTAGGCTACAATGTGCTACTCTAATTACATCATTACATGGAAATAAAAGAAATGAAACCGAACTCCTATCGATAGATATATAAACCTGTCTTTAAAACATACAACACAGAAGCATGATTATTACTCTTCTCTGTTTAGCTTTAACATTTCCAGATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCA</genome_strand>
        <mrna_strand>CCTTTGG....................................................................................................................GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT..........................................................................................................................................................................................................ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCGTATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCGATCTGCCCACATTGTGTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233419" ref_strand="+" ref_description="SGN-E233419 [cLED-9-H13]">
      <seq>cctttgggcagcttcaatgttcaaaggtccagttcctccggttgttccattttctttaggttctcttggcttcatgaccccgttttatagtgagcgttacaaggaatatctcgattcaattcttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80874" stop="79155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80696" g_stop="80690" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80689" i_stop="80574" i_length="116">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80573" g_stop="80495" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80494" i_stop="80293" i_length="202">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80292" g_stop="79985" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="394" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79581" g_stop="79455" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="521" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E233419" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80696" e_stop="80690"/>
          <exon e_start="80573" e_stop="80495"/>
          <exon e_start="80292" e_stop="79985"/>
          <exon e_start="79581" e_stop="79455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGGGTACGTAGCTAGTTTTGTCTTTTTCTTAACTAGAATTTTATATTCTACCATGTGGTTTTGATAAACATTTCATGGCGGGAGAGTGCTTAATAATTGCAACATATTTTATATTGCAGGCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAAAGATTTTCGTTCATATATGTGGTATACGTAGGCTACAATGTGCTACTCTAATTACATCATTACATGGAAATAAAAGAAATGAAACCGAACTCCTATCGATAGATATATAAACCTGTCTTTAAAACATACAACACAGAAGCATGATTATTACTCTTCTCTGTTTAGCTTTAACATTTCCAGATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCAT</genome_strand>
        <mrna_strand>CCTTTGG....................................................................................................................GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT..........................................................................................................................................................................................................ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307953" ref_strand="+" ref_description="SGN-E307953 [cLEZ-7-P4]">
      <seq>ggaatatctcgattcaattcttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaagggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80576" stop="79179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80276" g_stop="79985" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79581" g_stop="79479" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="395" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E307953" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80276" e_stop="79985"/>
          <exon e_start="79581" e_stop="79479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACA</genome_strand>
        <mrna_strand>GGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAAGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240116" ref_strand="+" ref_description="SGN-E240116 [cLED-32-M6]">
      <seq>cctttgggcagcttcaatgttcaaaggtccagttcctccggttgttccattttctttaggttctcttggcttcatgaccccgttttatagtgagcgttacaaggaatatctcgattcaattcttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0262O22-YHjxw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0262O22.1" temp_strand="-" temp_description="C01HBa0262O22.1  AC225025.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0262O22 upload_account_name:manual">
        <position start="80874" stop="79695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80696" g_stop="80690" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80689" i_stop="80574" i_length="116">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80573" g_stop="80495" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80494" i_stop="80293" i_length="202">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80292" g_stop="79995" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="384" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0262O22.1" gen_strand="-" ref_id="SGN-E240116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0262O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80696" e_stop="80690"/>
          <exon e_start="80573" e_stop="80495"/>
          <exon e_start="80292" e_stop="79995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGGGTACGTAGCTAGTTTTGTCTTTTTCTTAACTAGAATTTTATATTCTACCATGTGGTTTTGATAAACATTTCATGGCGGGAGAGTGCTTAATAATTGCAACATATTTTATATTGCAGGCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAAAGATTTTCGTTCATATATGTGGTATACGTAGGCTACAATGTGCTACTCTAATTACATCATTACATGGAAATAAAAGAAATGAAACCGAACTCCTATCGATAGATATATAAACCTGTCTTTAAAACATACAACACAGAAGCATGATTATTACTCTTCTCTGTTTAGCTTTAACATTTCCAGATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGT</genome_strand>
        <mrna_strand>CCTTTGG....................................................................................................................GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT..........................................................................................................................................................................................................ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>78</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4722" PGL_stop="9883"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4722" e_stop="4764"/>
            <exon e_start="6426" e_stop="6702"/>
            <exon e_start="7408" e_stop="7529"/>
            <exon e_start="7636" e_stop="7704"/>
            <exon e_start="8468" e_stop="8632"/>
            <exon e_start="9165" e_stop="9883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.907"/>
          <exon-intron don_prob="1.000" acc_prob="0.942" e_score="0.968"/>
          <exon-intron don_prob="0.751" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.175" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.949" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="4722" e_stop="4764" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4765" i_stop="6425" i_length="1661"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="6426" e_stop="6702" e_length="277"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.942">
            <gDNA_intron_boundary i_start="6703" i_stop="7407" i_length="705"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7408" e_stop="7529" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.751" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7530" i_stop="7635" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7636" e_stop="7704" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.175">
            <gDNA_intron_boundary i_start="7705" i_stop="8467" i_length="763"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8468" e_stop="8632" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.949">
            <gDNA_intron_boundary i_start="8633" i_stop="9164" i_length="532"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="9165" e_stop="9883" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4722" stop="4764"/>
              <exon start="6426" stop="6702"/>
              <exon start="7408" stop="7529"/>
              <exon start="7636" stop="7704"/>
              <exon start="8468" stop="8632"/>
              <exon start="9165" stop="9231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6582" stop="6702"/>
              <exon start="7408" stop="7529"/>
              <exon start="7636" stop="7704"/>
              <exon start="8468" stop="8632"/>
              <exon start="9165" stop="9550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8478" stop="8632"/>
              <exon start="9165" stop="9825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9268" stop="9828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9529" stop="9883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGTTCACTCTACTCTCTCTTCTGCCTCTTCCCTTTCACCTG : AACTAAACTTACTAGAACTAGAGAAGCATGCAATCAGAGTCCAAAAGTGCAAATTGTGGGGAAGCCAGAACTTATAATGTTCCTAATTCCACTTTAGAACCTTGGTGGAATACTGCTGGTAATAATCCTGTTTCTCTTGGACTGATGCGGGGAAGTCCATCAGATTCACCATCACCCGAACAAGCTGTGGATGGCCTATCACAGTCTGATGGTGGATCCAACGAGGAAGCTGATGATACTCCTGAAAAATCACAAAGTACCATACCTAAGCATTCAG : AGTTAGATGGGAGTTATGTGCAAGTAGATCAGAATTTACAGCCAATGGCATCTGCCATACCTCCAAAGGGTGATGGGTGCATAACACAACCCCCACAGTTTGAACTTGTTGCGCACTCCATG : GCATGTGCTCCAAATCTGTATGTTGACCCATACTATGGTGGAATACTGGCACCTTTTGGTCAGCCTATG : GTCCCTCCTCATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAG : CCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTCCAGAGTGGCACAAGGATAGAAGTTTGGCTGAGCATCAGAATTCTTACTCGAATGGTAATGGTTATGGAAAACAAATCAGCTTTCAGGAATCGAAATATCAGGCTCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATAACACCTTTTAGTACCTCTGGTCCAAGCCTGGTGGCAATTCATCCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGACTAGGACTAGAGTTGAAAAAGAAGAATTCAGTGAGCATATGGCTAGCTGTTTAGTCTAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATCATATACTTGTCAAACATTTCCTTTGTATTGCTGTATTTTAGGATCTTGATTCTGTGAAACTTCGAATTTGTTGTTTAATTCGATGACAGTGGTTGTAATGTCCTATTTCTTGTGAATTTGTTGATCCAAGTACAACACATTGTGACGAA</gDNA_template>
            <first_frame> T  V  H  S  T  L  S  S  A  S  S  L  S  P   : E  L  N  L  L  E  L  E  K  H  A  I  R  V  Q  K  C  K  L  W  G  S  Q  N  L  *  C  S  *  F  H  F  R  T  L  V  E  Y  C  W  *  *  S  C  F  S  W  T  D  A  G  K  S  I  R  F  T  I  T  R  T  S  C  G  W  P  I  T  V  *  W  W  I  Q  R  G  S  *  *  Y  S  *  K  I  T  K  Y  H  T  *  A  F  R :   V  R  W  E  L  C  A  S  R  S  E  F  T  A  N  G  I  C  H  T  S  K  G  *  W  V  H  N  T  T  P  T  V  *  T  C  C  A  L  H   : G  M  C  S  K  S  V  C  *  P  I  L  W  W  N  T  G  T  F  W  S  A  Y   : G  P  S  S  C  T  *  Y  A  S  S  E  D  A  F  A  S  *  N  G  S  R  A  C  L  C  Q  C  Q  A  V  S  W  Y  F  A  A  K  R  V  T  C  E  S  R  T  *  K  E  A  D  K  S  E  K   : A  I  S  S  R  V  E  T  S  A  C  L  E  K  G  K  S  F  W  R  A  F  C  K  K  V  R  C  W  Y  F  K  G  R  W  F  W  F  C  C  S  F  A  V  C  A  F  I  R  F  *  T  F  T  V  Q  C  C  *  C  S  R  V  A  Q  G  *  K  F  G  *  A  S  E  F  L  L  E  W  *  W  L  W  K  T  N  Q  L  S  G  I  E  I  S  G  S  V  C  S  G  R  G  R  R  F  F  R  P  A  M  V  E  T  S  H  N  T  F  *  Y  L  W  S  K  P  G  G  N  S  S  L  A  F  Y  F  N  V  M  E  K  R  G  H  A  P  S  R  F  D  S  S  F  L  Y  I  K  K  G  L  G  L  E  L  K  K  K  N  S  V  S  I  W  L  A  V  *  S  K  L  *  S  Y  R  Y  E  K  L  *  V  D  H  I  L  V  K  H  F  L  C  I  A  V  F  *  D  L  D  S  V  K  L  R  I  C  C  L  I  R  *  Q  W  L  *  C  P  I  S  C  E  F  V  D  P  S  T  T  H  C  D  E </first_frame>
            <second_frame>  L  F  T  L  L  S  L  L  P  L  P  F  H  L  :  N  *  T  Y  *  N  *  R  S  M  Q  S  E  S  K  S  A  N  C  G  E  A  R  T  Y  N  V  P  N  S  T  L  E  P  W  W  N  T  A  G  N  N  P  V  S  L  G  L  M  R  G  S  P  S  D  S  P  S  P  E  Q  A  V  D  G  L  S  Q  S  D  G  G  S  N  E  E  A  D  D  T  P  E  K  S  Q  S  T  I  P  K  H  S   : E  L  D  G  S  Y  V  Q  V  D  Q  N  L  Q  P  M  A  S  A  I  P  P  K  G  D  G  C  I  T  Q  P  P  Q  F  E  L  V  A  H  S  M  :  A  C  A  P  N  L  Y  V  D  P  Y  Y  G  G  I  L  A  P  F  G  Q  P  M  :  V  P  P  H  V  L  D  M  H  H  P  R  M  P  L  P  H  E  M  A  Q  E  P  V  Y  V  N  A  K  Q  Y  H  G  I  L  R  R  R  E  S  R  A  K  A  E  L  E  K  K  L  I  K  V  R  K  :  P  Y  L  H  E  S  R  H  Q  H  A  L  K  R  A  R  A  S  G  G  R  F  A  K  K  S  D  A  G  T  S  K  G  D  G  S  G  S  A  V  P  L  Q  S  V  H  S  S  G  S  E  P  L  L  S  N  A  A  D  V  P  E  W  H  K  D  R  S  L  A  E  H  Q  N  S  Y  S  N  G  N  G  Y  G  K  Q  I  S  F  Q  E  S  K  Y  Q  A  Q  S  A  Q  V  G  E  G  G  S  S  G  Q  R  W  *  K  H  H  I  T  P  F  S  T  S  G  P  S  L  V  A  I  H  P  W  L  F  I  S  M  L  W  K  R  G  V  M  R  L  V  D  S  I  L  P  F  C  T  *  K  K  D  *  D  *  S  *  K  R  R  I  Q  *  A  Y  G  *  L  F  S  L  N  C  K  V  I  G  M  K  S  C  R  *  I  I  Y  L  S  N  I  S  F  V  L  L  Y  F  R  I  L  I  L  *  N  F  E  F  V  V  *  F  D  D  S  G  C  N  V  L  F  L  V  N  L  L  I  Q  V  Q  H  I  V  T   </second_frame>
            <third_frame>   C  S  L  Y  S  L  F  C  L  F  P  F  T  * :   T  K  L  T  R  T  R  E  A  C  N  Q  S  P  K  V  Q  I  V  G  K  P  E  L  I  M  F  L  I  P  L  *  N  L  G  G  I  L  L  V  I  I  L  F  L  L  D  *  C  G  E  V  H  Q  I  H  H  H  P  N  K  L  W  M  A  Y  H  S  L  M  V  D  P  T  R  K  L  M  I  L  L  K  N  H  K  V  P  Y  L  S  I  Q  :  S  *  M  G  V  M  C  K  *  I  R  I  Y  S  Q  W  H  L  P  Y  L  Q  R  V  M  G  A  *  H  N  P  H  S  L  N  L  L  R  T  P  W :   H  V  L  Q  I  C  M  L  T  H  T  M  V  E  Y  W  H  L  L  V  S  L  W :   S  L  L  M  Y  L  I  C  I  I  R  G  C  L  C  L  M  K  W  L  K  S  L  F  M  S  M  P  S  S  I  M  V  F  C  G  E  E  S  H  V  R  K  Q  N  L  K  R  S  *  *  K  *  E  S :   H  I  F  T  S  R  D  I  S  M  P  *  K  G  Q  E  L  L  E  G  V  L  Q  K  S  Q  M  L  V  L  Q  R  E  M  V  L  V  L  L  F  L  C  S  L  C  I  H  Q  V  L  N  L  Y  C  P  M  L  L  M  F  Q  S  G  T  R  I  E  V  W  L  S  I  R  I  L  T  R  M  V  M  V  M  E  N  K  S  A  F  R  N  R  N  I  R  L  S  L  L  R  *  G  K  E  V  L  P  A  S  D  G  R  N  I  T  *  H  L  L  V  P  L  V  Q  A  W  W  Q  F  I  L  G  F  L  F  Q  C  Y  G  K  E  G  S  C  A  *  *  I  R  F  F  L  S  V  H  K  K  R  T  R  T  R  V  E  K  E  E  F  S  E  H  M  A  S  C  L  V  *  T  V  K  L  *  V  *  K  V  V  G  R  S  Y  T  C  Q  T  F  P  L  Y  C  C  I  L  G  S  *  F  C  E  T  S  N  L  L  F  N  S  M  T  V  V  V  M  S  Y  F  L  *  I  C  *  S  K  Y  N  T  L  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6447" stop="6702"/>
                    <exon start="7408" stop="7529"/>
                    <exon start="7636" stop="7704"/>
                    <exon start="8468" stop="8632"/>
                    <exon start="9165" stop="9497"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSMQSESKSANCGEARTYNVPNSTLEPWWNTAGNNPVSLGLMRGSPSDSPSPEQAVDGLSQSDGGSNEEADDTPEKSQSTIPKHSELDGSYVQVDQNLQPMASAIPPKGDGCITQPPQFELVAHSMACAPNLYVDPYYGGILAPFGQPMVPPHVLDMHHPRMPLPHEMAQEPVYVNAKQYHGILRRRESRAKAELEKKLIKVRKPYLHESRHQHALKRARASGGRFAKKSDAGTSKGDGSGSAVPLQSVHSSGSEPLLSNAADVPEWHKDRSLAEHQNSYSNGNGYGKQISFQESKYQAQSAQVGEGGSSGQRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8492" e_stop="9883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="8492" e_stop="9883" e_length="1392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8492" stop="9345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8493" stop="9146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9268" stop="9828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9529" stop="9883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAGGTTAGTATATGCCTCATCCACTGGGCTGCTTGTTGGGTGTTCTTTTCTCCTGTTATCTAAAGAATGCATGATGCACCTTTTTAGCAGCATATTTTTGTTACATGTGCCTGGCTGTTCTGGAGATATTCCGTTGTCCCGGATTGGAGATGTACCCACTCTTTGGCTGAGCTCACTTTTCTTTAAAAAAAATTAAACTGTTAAAGAATTTTATGTTACTTAAGTAGGAGGAAATGAAAGGTAAAATCTGATATTACTTTTATCTGTGTAGAACACGGTCAATTCACCTTTTTAAACTGATCCGTCAAATACACCACTCATAAGTATAATTTGGTGAAAGGAGTTCCTTATGCCAATGTTTGGGCTATTAATAACCAATATCAGTTTCTCCACTGCTATATTTTTATTGTGAAGTCACAGGATTGGCTGACATGATTTTGCACGAATGTTATGCTGATGATATGCAACATATGCTCGGTTTATTCTGCTTACTCATCCTCAGTTGTTGATACTTTCTGTCTTCCTCGTAATACAGCCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTCCAGAGTGGCACAAGGATAGAAGTTTGGCTGAGCATCAGAATTCTTACTCGAATGGTAATGGTTATGGAAAACAAATCAGCTTTCAGGAATCGAAATATCAGGCTCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATAACACCTTTTAGTACCTCTGGTCCAAGCCTGGTGGCAATTCATCCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGACTAGGACTAGAGTTGAAAAAGAAGAATTCAGTGAGCATATGGCTAGCTGTTTAGTCTAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATCATATACTTGTCAAACATTTCCTTTGTATTGCTGTATTTTAGGATCTTGATTCTGTGAAACTTCGAATTTGTTGTTTAATTCGATGACAGTGGTTGTAATGTCCTATTTCTTGTGAATTTGTTGATCCAAGTACAACACATTGTGACGAA</gDNA_template>
            <first_frame> H  H  P  R  M  P  L  P  H  E  M  A  Q  E  P  V  Y  V  N  A  K  Q  Y  H  G  I  L  R  R  R  E  S  R  A  K  A  E  L  E  K  K  L  I  K  V  R  K  V  S  I  C  L  I  H  W  A  A  C  W  V  F  F  S  P  V  I  *  R  M  H  D  A  P  F  *  Q  H  I  F  V  T  C  A  W  L  F  W  R  Y  S  V  V  P  D  W  R  C  T  H  S  L  A  E  L  T  F  L  *  K  K  L  N  C  *  R  I  L  C  Y  L  S  R  R  K  *  K  V  K  S  D  I  T  F  I  C  V  E  H  G  Q  F  T  F  L  N  *  S  V  K  Y  T  T  H  K  Y  N  L  V  K  G  V  P  Y  A  N  V  W  A  I  N  N  Q  Y  Q  F  L  H  C  Y  I  F  I  V  K  S  Q  D  W  L  T  *  F  C  T  N  V  M  L  M  I  C  N  I  C  S  V  Y  S  A  Y  S  S  S  V  V  D  T  F  C  L  P  R  N  T  A  I  S  S  R  V  E  T  S  A  C  L  E  K  G  K  S  F  W  R  A  F  C  K  K  V  R  C  W  Y  F  K  G  R  W  F  W  F  C  C  S  F  A  V  C  A  F  I  R  F  *  T  F  T  V  Q  C  C  *  C  S  R  V  A  Q  G  *  K  F  G  *  A  S  E  F  L  L  E  W  *  W  L  W  K  T  N  Q  L  S  G  I  E  I  S  G  S  V  C  S  G  R  G  R  R  F  F  R  P  A  M  V  E  T  S  H  N  T  F  *  Y  L  W  S  K  P  G  G  N  S  S  L  A  F  Y  F  N  V  M  E  K  R  G  H  A  P  S  R  F  D  S  S  F  L  Y  I  K  K  G  L  G  L  E  L  K  K  K  N  S  V  S  I  W  L  A  V  *  S  K  L  *  S  Y  R  Y  E  K  L  *  V  D  H  I  L  V  K  H  F  L  C  I  A  V  F  *  D  L  D  S  V  K  L  R  I  C  C  L  I  R  *  Q  W  L  *  C  P  I  S  C  E  F  V  D  P  S  T  T  H  C  D  E </first_frame>
            <second_frame>  I  I  R  G  C  L  C  L  M  K  W  L  K  S  L  F  M  S  M  P  S  S  I  M  V  F  C  G  E  E  S  H  V  R  K  Q  N  L  K  R  S  *  *  K  *  E  R  L  V  Y  A  S  S  T  G  L  L  V  G  C  S  F  L  L  L  S  K  E  C  M  M  H  L  F  S  S  I  F  L  L  H  V  P  G  C  S  G  D  I  P  L  S  R  I  G  D  V  P  T  L  W  L  S  S  L  F  F  K  K  N  *  T  V  K  E  F  Y  V  T  *  V  G  G  N  E  R  *  N  L  I  L  L  L  S  V  *  N  T  V  N  S  P  F  *  T  D  P  S  N  T  P  L  I  S  I  I  W  *  K  E  F  L  M  P  M  F  G  L  L  I  T  N  I  S  F  S  T  A  I  F  L  L  *  S  H  R  I  G  *  H  D  F  A  R  M  L  C  *  *  Y  A  T  Y  A  R  F  I  L  L  T  H  P  Q  L  L  I  L  S  V  F  L  V  I  Q  P  Y  L  H  E  S  R  H  Q  H  A  L  K  R  A  R  A  S  G  G  R  F  A  K  K  S  D  A  G  T  S  K  G  D  G  S  G  S  A  V  P  L  Q  S  V  H  S  S  G  S  E  P  L  L  S  N  A  A  D  V  P  E  W  H  K  D  R  S  L  A  E  H  Q  N  S  Y  S  N  G  N  G  Y  G  K  Q  I  S  F  Q  E  S  K  Y  Q  A  Q  S  A  Q  V  G  E  G  G  S  S  G  Q  R  W  *  K  H  H  I  T  P  F  S  T  S  G  P  S  L  V  A  I  H  P  W  L  F  I  S  M  L  W  K  R  G  V  M  R  L  V  D  S  I  L  P  F  C  T  *  K  K  D  *  D  *  S  *  K  R  R  I  Q  *  A  Y  G  *  L  F  S  L  N  C  K  V  I  G  M  K  S  C  R  *  I  I  Y  L  S  N  I  S  F  V  L  L  Y  F  R  I  L  I  L  *  N  F  E  F  V  V  *  F  D  D  S  G  C  N  V  L  F  L  V  N  L  L  I  Q  V  Q  H  I  V  T   </second_frame>
            <third_frame>   S  S  E  D  A  F  A  S  *  N  G  S  R  A  C  L  C  Q  C  Q  A  V  S  W  Y  F  A  A  K  R  V  T  C  E  S  R  T  *  K  E  A  D  K  S  E  K  G  *  Y  M  P  H  P  L  G  C  L  L  G  V  L  F  S  C  Y  L  K  N  A  *  C  T  F  L  A  A  Y  F  C  Y  M  C  L  A  V  L  E  I  F  R  C  P  G  L  E  M  Y  P  L  F  G  *  A  H  F  S  L  K  K  I  K  L  L  K  N  F  M  L  L  K  *  E  E  M  K  G  K  I  *  Y  Y  F  Y  L  C  R  T  R  S  I  H  L  F  K  L  I  R  Q  I  H  H  S  *  V  *  F  G  E  R  S  S  L  C  Q  C  L  G  Y  *  *  P  I  S  V  S  P  L  L  Y  F  Y  C  E  V  T  G  L  A  D  M  I  L  H  E  C  Y  A  D  D  M  Q  H  M  L  G  L  F  C  L  L  I  L  S  C  *  Y  F  L  S  S  S  *  Y  S  H  I  F  T  S  R  D  I  S  M  P  *  K  G  Q  E  L  L  E  G  V  L  Q  K  S  Q  M  L  V  L  Q  R  E  M  V  L  V  L  L  F  L  C  S  L  C  I  H  Q  V  L  N  L  Y  C  P  M  L  L  M  F  Q  S  G  T  R  I  E  V  W  L  S  I  R  I  L  T  R  M  V  M  V  M  E  N  K  S  A  F  R  N  R  N  I  R  L  S  L  L  R  *  G  K  E  V  L  P  A  S  D  G  R  N  I  T  *  H  L  L  V  P  L  V  Q  A  W  W  Q  F  I  L  G  F  L  F  Q  C  Y  G  K  E  G  S  C  A  *  *  I  R  F  F  L  S  V  H  K  K  R  T  R  T  R  V  E  K  E  E  F  S  E  H  M  A  S  C  L  V  *  T  V  K  L  *  V  *  K  V  V  G  R  S  Y  T  C  Q  T  F  P  L  Y  C  C  I  L  G  S  *  F  C  E  T  S  N  L  L  F  N  S  M  T  V  V  V  M  S  Y  F  L  *  I  C  *  S  K  Y  N  T  L  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9090" stop="9497"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YATYARFILLTHPQLLILSVFLVIQPYLHESRHQHALKRARASGGRFAKKSDAGTSKGDGSGSAVPLQSVHSSGSEPLLSNAADVPEWHKDRSLAEHQNSYSNGNGYGKQISFQESKYQAQSAQVGEGGSSGQRW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8492" stop="8692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HHPRMPLPHEMAQEPVYVNAKQYHGILRRRESRAKAELEKKLIKVRKVSICLIHWAACWVFFSPVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4725" e_stop="4764"/>
            <exon e_start="6412" e_stop="6702"/>
            <exon e_start="7414" e_stop="7529"/>
            <exon e_start="7636" e_stop="7704"/>
            <exon e_start="8468" e_stop="8632"/>
            <exon e_start="9165" e_stop="9883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="0.925"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.945"/>
          <exon-intron don_prob="0.751" acc_prob="1.000" e_score="0.905"/>
          <exon-intron don_prob="0.940" acc_prob="0.175" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.949" e_score="0.994"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="4725" e_stop="4764" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="4765" i_stop="6411" i_length="1647"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="6412" e_stop="6702" e_length="291"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6703" i_stop="7413" i_length="711"/>
          </intron>
          <exon e_serial="3" e_score="0.905">
            <gDNA_exon_boundary e_start="7414" e_stop="7529" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.751" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7530" i_stop="7635" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7636" e_stop="7704" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.175">
            <gDNA_intron_boundary i_start="7705" i_stop="8467" i_length="763"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="8468" e_stop="8632" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.949">
            <gDNA_intron_boundary i_start="8633" i_stop="9164" i_length="532"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="9165" e_stop="9883" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4725" stop="4764"/>
              <exon start="6412" stop="6702"/>
              <exon start="7414" stop="7529"/>
              <exon start="7636" stop="7704"/>
              <exon start="8468" stop="8632"/>
              <exon start="9165" stop="9202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8478" stop="8632"/>
              <exon start="9165" stop="9825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9268" stop="9828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9529" stop="9883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCACTCTACTCTCTCTTCTGCCTCTTCCCTTTCACCTG : AACATTGTACGAAGAACTAAACTTACTAGAACTAGAGAAGCATGCAATCAGAGTCCAAAAGTGCAAATTGTGGGGAAGCCAGAACTTATAATGTTCCTAATTCCACTTTAGAACCTTGGTGGAATACTGCTGGTAATAATCCTGTTTCTCTTGGACTGATGCGGGGAAGTCCATCAGATTCACCATCACCCGAACAAGCTGTGGATGGCCTATCACAGTCTGATGGTGGATCCAACGAGGAAGCTGATGATACTCCTGAAAAATCACAAAGTACCATACCTAAGCATTCAG : ATGGGAGTTATGTGCAAGTAGATCAGAATTTACAGCCAATGGCATCTGCCATACCTCCAAAGGGTGATGGGTGCATAACACAACCCCCACAGTTTGAACTTGTTGCGCACTCCATG : GCATGTGCTCCAAATCTGTATGTTGACCCATACTATGGTGGAATACTGGCACCTTTTGGTCAGCCTATG : GTCCCTCCTCATGTACTTGATATGCATCATCCGAGGATGCCTTTGCCTCATGAAATGGCTCAAGAGCCTGTTTATGTCAATGCCAAGCAGTATCATGGTATTTTGCGGCGAAGAGAGTCACGTGCGAAAGCAGAACTTGAAAAGAAGCTGATAAAAGTGAGAAAG : CCATATCTTCACGAGTCGAGACATCAGCATGCCTTGAAAAGGGCAAGAGCTTCTGGAGGGCGTTTTGCAAAAAAGTCAGATGCTGGTACTTCAAAGGGAGATGGTTCTGGTTCTGCTGTTCCTTTGCAGTCTGTGCATTCATCAGGTTCTGAACCTTTACTGTCCAATGCTGCTGATGTTCCAGAGTGGCACAAGGATAGAAGTTTGGCTGAGCATCAGAATTCTTACTCGAATGGTAATGGTTATGGAAAACAAATCAGCTTTCAGGAATCGAAATATCAGGCTCAGTCTGCTCAGGTAGGGGAAGGAGGTTCTTCCGGCCAGCGATGGTAGAAACATCACATAACACCTTTTAGTACCTCTGGTCCAAGCCTGGTGGCAATTCATCCTTGGCTTTTTATTTCAATGTTATGGAAAAGAGGGGTCATGCGCCTAGTAGATTCGATTCTTCCTTTCTGTACATAAAAAAAGGACTAGGACTAGAGTTGAAAAAGAAGAATTCAGTGAGCATATGGCTAGCTGTTTAGTCTAAACTGTAAAGTTATAGGTATGAAAAGTTGTAGGTAGATCATATACTTGTCAAACATTTCCTTTGTATTGCTGTATTTTAGGATCTTGATTCTGTGAAACTTCGAATTTGTTGTTTAATTCGATGACAGTGGTTGTAATGTCCTATTTCTTGTGAATTTGTTGATCCAAGTACAACACATTGTGACGAA</gDNA_template>
            <first_frame> V  H  S  T  L  S  S  A  S  S  L  S  P   : E  H  C  T  K  N  *  T  Y  *  N  *  R  S  M  Q  S  E  S  K  S  A  N  C  G  E  A  R  T  Y  N  V  P  N  S  T  L  E  P  W  W  N  T  A  G  N  N  P  V  S  L  G  L  M  R  G  S  P  S  D  S  P  S  P  E  Q  A  V  D  G  L  S  Q  S  D  G  G  S  N  E  E  A  D  D  T  P  E  K  S  Q  S  T  I  P  K  H  S   : D  G  S  Y  V  Q  V  D  Q  N  L  Q  P  M  A  S  A  I  P  P  K  G  D  G  C  I  T  Q  P  P  Q  F  E  L  V  A  H  S  M  :  A  C  A  P  N  L  Y  V  D  P  Y  Y  G  G  I  L  A  P  F  G  Q  P  M  :  V  P  P  H  V  L  D  M  H  H  P  R  M  P  L  P  H  E  M  A  Q  E  P  V  Y  V  N  A  K  Q  Y  H  G  I  L  R  R  R  E  S  R  A  K  A  E  L  E  K  K  L  I  K  V  R  K  :  P  Y  L  H  E  S  R  H  Q  H  A  L  K  R  A  R  A  S  G  G  R  F  A  K  K  S  D  A  G  T  S  K  G  D  G  S  G  S  A  V  P  L  Q  S  V  H  S  S  G  S  E  P  L  L  S  N  A  A  D  V  P  E  W  H  K  D  R  S  L  A  E  H  Q  N  S  Y  S  N  G  N  G  Y  G  K  Q  I  S  F  Q  E  S  K  Y  Q  A  Q  S  A  Q  V  G  E  G  G  S  S  G  Q  R  W  *  K  H  H  I  T  P  F  S  T  S  G  P  S  L  V  A  I  H  P  W  L  F  I  S  M  L  W  K  R  G  V  M  R  L  V  D  S  I  L  P  F  C  T  *  K  K  D  *  D  *  S  *  K  R  R  I  Q  *  A  Y  G  *  L  F  S  L  N  C  K  V  I  G  M  K  S  C  R  *  I  I  Y  L  S  N  I  S  F  V  L  L  Y  F  R  I  L  I  L  *  N  F  E  F  V  V  *  F  D  D  S  G  C  N  V  L  F  L  V  N  L  L  I  Q  V  Q  H  I  V  T   </first_frame>
            <second_frame>  F  T  L  L  S  L  L  P  L  P  F  H  L  :  N  I  V  R  R  T  K  L  T  R  T  R  E  A  C  N  Q  S  P  K  V  Q  I  V  G  K  P  E  L  I  M  F  L  I  P  L  *  N  L  G  G  I  L  L  V  I  I  L  F  L  L  D  *  C  G  E  V  H  Q  I  H  H  H  P  N  K  L  W  M  A  Y  H  S  L  M  V  D  P  T  R  K  L  M  I  L  L  K  N  H  K  V  P  Y  L  S  I  Q  :  M  G  V  M  C  K  *  I  R  I  Y  S  Q  W  H  L  P  Y  L  Q  R  V  M  G  A  *  H  N  P  H  S  L  N  L  L  R  T  P  W :   H  V  L  Q  I  C  M  L  T  H  T  M  V  E  Y  W  H  L  L  V  S  L  W :   S  L  L  M  Y  L  I  C  I  I  R  G  C  L  C  L  M  K  W  L  K  S  L  F  M  S  M  P  S  S  I  M  V  F  C  G  E  E  S  H  V  R  K  Q  N  L  K  R  S  *  *  K  *  E  S :   H  I  F  T  S  R  D  I  S  M  P  *  K  G  Q  E  L  L  E  G  V  L  Q  K  S  Q  M  L  V  L  Q  R  E  M  V  L  V  L  L  F  L  C  S  L  C  I  H  Q  V  L  N  L  Y  C  P  M  L  L  M  F  Q  S  G  T  R  I  E  V  W  L  S  I  R  I  L  T  R  M  V  M  V  M  E  N  K  S  A  F  R  N  R  N  I  R  L  S  L  L  R  *  G  K  E  V  L  P  A  S  D  G  R  N  I  T  *  H  L  L  V  P  L  V  Q  A  W  W  Q  F  I  L  G  F  L  F  Q  C  Y  G  K  E  G  S  C  A  *  *  I  R  F  F  L  S  V  H  K  K  R  T  R  T  R  V  E  K  E  E  F  S  E  H  M  A  S  C  L  V  *  T  V  K  L  *  V  *  K  V  V  G  R  S  Y  T  C  Q  T  F  P  L  Y  C  C  I  L  G  S  *  F  C  E  T  S  N  L  L  F  N  S  M  T  V  V  V  M  S  Y  F  L  *  I  C  *  S  K  Y  N  T  L  *  R  </second_frame>
            <third_frame>   S  L  Y  S  L  F  C  L  F  P  F  T  * :   T  L  Y  E  E  L  N  L  L  E  L  E  K  H  A  I  R  V  Q  K  C  K  L  W  G  S  Q  N  L  *  C  S  *  F  H  F  R  T  L  V  E  Y  C  W  *  *  S  C  F  S  W  T  D  A  G  K  S  I  R  F  T  I  T  R  T  S  C  G  W  P  I  T  V  *  W  W  I  Q  R  G  S  *  *  Y  S  *  K  I  T  K  Y  H  T  *  A  F  R :   W  E  L  C  A  S  R  S  E  F  T  A  N  G  I  C  H  T  S  K  G  *  W  V  H  N  T  T  P  T  V  *  T  C  C  A  L  H   : G  M  C  S  K  S  V  C  *  P  I  L  W  W  N  T  G  T  F  W  S  A  Y   : G  P  S  S  C  T  *  Y  A  S  S  E  D  A  F  A  S  *  N  G  S  R  A  C  L  C  Q  C  Q  A  V  S  W  Y  F  A  A  K  R  V  T  C  E  S  R  T  *  K  E  A  D  K  S  E  K   : A  I  S  S  R  V  E  T  S  A  C  L  E  K  G  K  S  F  W  R  A  F  C  K  K  V  R  C  W  Y  F  K  G  R  W  F  W  F  C  C  S  F  A  V  C  A  F  I  R  F  *  T  F  T  V  Q  C  C  *  C  S  R  V  A  Q  G  *  K  F  G  *  A  S  E  F  L  L  E  W  *  W  L  W  K  T  N  Q  L  S  G  I  E  I  S  G  S  V  C  S  G  R  G  R  R  F  F  R  P  A  M  V  E  T  S  H  N  T  F  *  Y  L  W  S  K  P  G  G  N  S  S  L  A  F  Y  F  N  V  M  E  K  R  G  H  A  P  S  R  F  D  S  S  F  L  Y  I  K  K  G  L  G  L  E  L  K  K  K  N  S  V  S  I  W  L  A  V  *  S  K  L  *  S  Y  R  Y  E  K  L  *  V  D  H  I  L  V  K  H  F  L  C  I  A  V  F  *  D  L  D  S  V  K  L  R  I  C  C  L  I  R  *  Q  W  L  *  C  P  I  S  C  E  F  V  D  P  S  T  T  H  C  D  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6447" stop="6702"/>
                    <exon start="7414" stop="7529"/>
                    <exon start="7636" stop="7704"/>
                    <exon start="8468" stop="8632"/>
                    <exon start="9165" stop="9497"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>936</number_coding_nucleotides>
                  <number_encoded_amino_acids>312</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSMQSESKSANCGEARTYNVPNSTLEPWWNTAGNNPVSLGLMRGSPSDSPSPEQAVDGLSQSDGGSNEEADDTPEKSQSTIPKHSDGSYVQVDQNLQPMASAIPPKGDGCITQPPQFELVAHSMACAPNLYVDPYYGGILAPFGQPMVPPHVLDMHHPRMPLPHEMAQEPVYVNAKQYHGILRRRESRAKAELEKKLIKVRKPYLHESRHQHALKRARASGGRFAKKSDAGTSKGDGSGSAVPLQSVHSSGSEPLLSNAADVPEWHKDRSLAEHQNSYSNGNGYGKQISFQESKYQAQSAQVGEGGSSGQRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="7842" e_stop="8312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7842" e_stop="8312" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7842" stop="8312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATGTCGTTAGGGATATCTAAACATAGAAAGCTGCTTCATGGTGGTTGTTTGATATATCTTTGGCAGGTGGTTAAACGTAGTCTTTGTATGTGTTGGCTTAACCCTGATATCTTCTTGTAGTTAGCTTTAGTTTAGAGACACTCACTTTCTCTGTATTGCCAACTTCCAGGTGACTTGCTAATTATCCTTCTTGCAATCATACATGTTACAACATTATTGTTCAATTTGGGATGAGTTCTTTCTTCTTTCAATTGAATTAGAATCAGTGGCGTCCAGTGCGCATGTCCCTTTCATTTAAATCATTGATTAGATTTCATAGGACAGCTAGTATAAATAGTACTCCGGATGCAGCTTCTTTTGTTTGTCTTTTAAATGAGCTCTTTTCTGTTTTTTCTATTTCGACTAACAAATAGATACAATCAGTTCCAGAAAGATCTCTTTGCTTGATATGCCTAGGACTCTAGGAAG</gDNA_template>
            <first_frame> I  M  S  L  G  I  S  K  H  R  K  L  L  H  G  G  C  L  I  Y  L  W  Q  V  V  K  R  S  L  C  M  C  W  L  N  P  D  I  F  L  *  L  A  L  V  *  R  H  S  L  S  L  Y  C  Q  L  P  G  D  L  L  I  I  L  L  A  I  I  H  V  T  T  L  L  F  N  L  G  *  V  L  S  S  F  N  *  I  R  I  S  G  V  Q  C  A  C  P  F  H  L  N  H  *  L  D  F  I  G  Q  L  V  *  I  V  L  R  M  Q  L  L  L  F  V  F  *  M  S  S  F  L  F  F  L  F  R  L  T  N  R  Y  N  Q  F  Q  K  D  L  F  A  *  Y  A  *  D  S  R  K </first_frame>
            <second_frame>  L  C  R  *  G  Y  L  N  I  E  S  C  F  M  V  V  V  *  Y  I  F  G  R  W  L  N  V  V  F  V  C  V  G  L  T  L  I  S  S  C  S  *  L  *  F  R  D  T  H  F  L  C  I  A  N  F  Q  V  T  C  *  L  S  F  L  Q  S  Y  M  L  Q  H  Y  C  S  I  W  D  E  F  F  L  L  S  I  E  L  E  S  V  A  S  S  A  H  V  P  F  I  *  I  I  D  *  I  S  *  D  S  *  Y  K  *  Y  S  G  C  S  F  F  C  L  S  F  K  *  A  L  F  C  F  F  Y  F  D  *  Q  I  D  T  I  S  S  R  K  I  S  L  L  D  M  P  R  T  L  G   </second_frame>
            <third_frame>   Y  V  V  R  D  I  *  T  *  K  A  A  S  W  W  L  F  D  I  S  L  A  G  G  *  T  *  S  L  Y  V  L  A  *  P  *  Y  L  L  V  V  S  F  S  L  E  T  L  T  F  S  V  L  P  T  S  R  *  L  A  N  Y  P  S  C  N  H  T  C  Y  N  I  I  V  Q  F  G  M  S  S  F  F  F  Q  L  N  *  N  Q  W  R  P  V  R  M  S  L  S  F  K  S  L  I  R  F  H  R  T  A  S  I  N  S  T  P  D  A  A  S  F  V  C  L  L  N  E  L  F  S  V  F  S  I  S  T  N  K  *  I  Q  S  V  P  E  R  S  L  C  L  I  C  L  G  L  *  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0262O22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="35825" PGL_stop="36376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35825" e_stop="36376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="35825" e_stop="36376" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35825" stop="36376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTTTAGCATTGTGGCAAGAGTCATTCTATTTCCATGCATAGTTGTATTTCTAATGATAGAGTTACGAAGAAGGCATTTGTCGATTTATGATGCAATTGAAAGTTTCCTGCACGGTGAGAACAATTTCACGCCCATTAGATATTCCAACTCCAACATAAGAAAGATGACTAGAAACTTTAAAGAGAAACTAGGCCAAGGAGGTTATGGTTCAGTATATAAAGGCAAGCTTCAAAGTGGTCCTAATGTAGCAGTGAAGATCTTGAGCAAGCCCAAAGCCGATGGACAAGACTTCATCAACGAGGTTGCTACAATCGGGAGGATTCATCATGTTAACATAGTACAACTTATTGGCTATTGTGCTGAGAGATGTAAGCGTGCTCTCGTATATGACTTCATGCCTAAAGGATCACTTGAAAAGTACATCACACCTCGAGAAGGAGGAGCTGAACTATTAAGTTGGAAAAGAAAGTTTGAAATTGCTCTTGGAGTTGCTCGAGGTATTGAATACTTGCATCGAGGTTGTGACATTCAGATTCTACATTTTGACAT</gDNA_template>
            <first_frame> R  V  *  H  C  G  K  S  H  S  I  S  M  H  S  C  I  S  N  D  R  V  T  K  K  A  F  V  D  L  *  C  N  *  K  F  P  A  R  *  E  Q  F  H  A  H  *  I  F  Q  L  Q  H  K  K  D  D  *  K  L  *  R  E  T  R  P  R  R  L  W  F  S  I  *  R  Q  A  S  K  W  S  *  C  S  S  E  D  L  E  Q  A  Q  S  R  W  T  R  L  H  Q  R  G  C  Y  N  R  E  D  S  S  C  *  H  S  T  T  Y  W  L  L  C  *  E  M  *  A  C  S  R  I  *  L  H  A  *  R  I  T  *  K  V  H  H  T  S  R  R  R  S  *  T  I  K  L  E  K  K  V  *  N  C  S  W  S  C  S  R  Y  *  I  L  A  S  R  L  *  H  S  D  S  T  F  *  H </first_frame>
            <second_frame>  G  F  S  I  V  A  R  V  I  L  F  P  C  I  V  V  F  L  M  I  E  L  R  R  R  H  L  S  I  Y  D  A  I  E  S  F  L  H  G  E  N  N  F  T  P  I  R  Y  S  N  S  N  I  R  K  M  T  R  N  F  K  E  K  L  G  Q  G  G  Y  G  S  V  Y  K  G  K  L  Q  S  G  P  N  V  A  V  K  I  L  S  K  P  K  A  D  G  Q  D  F  I  N  E  V  A  T  I  G  R  I  H  H  V  N  I  V  Q  L  I  G  Y  C  A  E  R  C  K  R  A  L  V  Y  D  F  M  P  K  G  S  L  E  K  Y  I  T  P  R  E  G  G  A  E  L  L  S  W  K  R  K  F  E  I  A  L  G  V  A  R  G  I  E  Y  L  H  R  G  C  D  I  Q  I  L  H  F  D   </second_frame>
            <third_frame>   G  L  A  L  W  Q  E  S  F  Y  F  H  A  *  L  Y  F  *  *  *  S  Y  E  E  G  I  C  R  F  M  M  Q  L  K  V  S  C  T  V  R  T  I  S  R  P  L  D  I  P  T  P  T  *  E  R  *  L  E  T  L  K  R  N  *  A  K  E  V  M  V  Q  Y  I  K  A  S  F  K  V  V  L  M  *  Q  *  R  S  *  A  S  P  K  P  M  D  K  T  S  S  T  R  L  L  Q  S  G  G  F  I  M  L  T  *  Y  N  L  L  A  I  V  L  R  D  V  S  V  L  S  Y  M  T  S  C  L  K  D  H  L  K  S  T  S  H  L  E  K  E  E  L  N  Y  *  V  G  K  E  S  L  K  L  L  L  E  L  L  E  V  L  N  T  C  I  E  V  V  T  F  R  F  Y  I  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35826" stop="36374"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSIVARVILFPCIVVFLMIELRRRHLSIYDAIESFLHGENNFTPIRYSNSNIRKMTRNFKEKLGQGGYGSVYKGKLQSGPNVAVKILSKPKADGQDFINEVATIGRIHHVNIVQLIGYCAERCKRALVYDFMPKGSLEKYITPREGGAELLSWKRKFEIALGVARGIEYLHRGCDIQILHFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="36405" PGL_stop="38472"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36405" e_stop="37004"/>
            <exon e_start="37214" e_stop="37224"/>
            <exon e_start="38428" e_stop="38472"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.943"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="0.545"/>
          <exon-only e_score="0.644"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="36405" e_stop="37004" e_length="600"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37005" i_stop="37213" i_length="209"/>
          </intron>
          <exon e_serial="2" e_score="0.545">
            <gDNA_exon_boundary e_start="37214" e_stop="37224" e_length="11"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37225" i_stop="38427" i_length="1203"/>
          </intron>
          <exon e_serial="3" e_score="0.644">
            <gDNA_exon_boundary e_start="38428" e_stop="38472" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36405" stop="37004"/>
              <exon start="37214" stop="37224"/>
              <exon start="38428" stop="38472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415768" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36439" stop="36999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412493" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTCATTCCGAAACTATCTGATTTTGGTCTTGCAAAATCATACCCGACGGATAAGAGCATTGTTACTCTAACAGCAGTCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTGTAAGGCAGATGTTTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGTAGCCAGAGAGGATATGTCAAGCCAATACTTCCCACATTGGATATATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGAAGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCATCCTTCAATGACTAGAGTAGTGGAAATGCTTGAAGGCGATTTACAAGCATTGCAAACGCCTCCTAGGTCCTCTGAATCGCGTGAACCATGTTCGTTGGAGTTCAATTTAACTAGTTCTTCAATGAACTCAACTGAGTCTGTGAAGTTGCTAGAGAGTTGTTCTGATTCTGCAATAATAGATGTAATTGTTGTTTGACATCACACGTTATGTACCTAATTCATGTTGTTTTATGAT : GAGAGATAGAG : TTTATCTGAATTTCTAGCTTACATTCAAAAAAAATAAAAATATAT</gDNA_template>
            <first_frame> N  F  I  P  K  L  S  D  F  G  L  A  K  S  Y  P  T  D  K  S  I  V  T  L  T  A  V  R  G  T  I  G  Y  V  A  P  E  L  I  N  R  S  I  G  P  I  S  C  K  A  D  V  Y  S  F  G  M  L  L  I  D  I  V  G  L  K  T  N  S  V  A  R  E  D  M  S  S  Q  Y  F  P  H  W  I  Y  D  Q  L  D  K  G  K  E  I  E  V  L  D  E  T  H  E  D  V  K  K  L  T  L  V  A  L  W  C  I  Q  M  N  P  L  D  H  P  S  M  T  R  V  V  E  M  L  E  G  D  L  Q  A  L  Q  T  P  P  R  S  S  E  S  R  E  P  C  S  L  E  F  N  L  T  S  S  S  M  N  S  T  E  S  V  K  L  L  E  S  C  S  D  S  A  I  I  D  V  I  V  V  *  H  H  T  L  C  T  *  F  M  L  F  Y  D  :  E  R  *  S :   L  S  E  F  L  A  Y  I  Q  K  K  *  K  Y   </first_frame>
            <second_frame>  I  S  F  R  N  Y  L  I  L  V  L  Q  N  H  T  R  R  I  R  A  L  L  L  *  Q  Q  S  G  E  Q  L  V  M  *  L  Q  S  *  S  T  E  A  L  V  Q  Y  L  V  R  Q  M  F  I  A  L  E  C  Y  S  L  I  S  *  A  *  K  Q  T  R  *  P  E  R  I  C  Q  A  N  T  S  H  I  G  Y  M  I  S  S  T  R  E  R  R  L  K  Y  *  T  R  H  M  K  T  *  R  S  *  L  *  L  L  C  G  A  Y  K  *  I  H  S  I  I  L  Q  *  L  E  *  W  K  C  L  K  A  I  Y  K  H  C  K  R  L  L  G  P  L  N  R  V  N  H  V  R  W  S  S  I  *  L  V  L  Q  *  T  Q  L  S  L  *  S  C  *  R  V  V  L  I  L  Q  *  *  M  *  L  L  F  D  I  T  R  Y  V  P  N  S  C  C  F  M  M :   R  D  R   : V  Y  L  N  F  *  L  T  F  K  K  N  K  N  I  </second_frame>
            <third_frame>   F  H  S  E  T  I  *  F  W  S  C  K  I  I  P  D  G  *  E  H  C  Y  S  N  S  S  Q  G  N  N  W  L  C  S  S  R  V  D  Q  Q  K  H  W  S  N  I  L  *  G  R  C  L  *  L  W  N  V  T  H  *  Y  R  R  L  E  N  K  L  G  S  Q  R  G  Y  V  K  P  I  L  P  T  L  D  I  *  S  A  R  Q  G  K  G  D  *  S  T  R  R  D  T  *  R  R  K  E  A  D  F  S  C  F  V  V  H  T  N  E  S  T  R  S  S  F  N  D  *  S  S  G  N  A  *  R  R  F  T  S  I  A  N  A  S  *  V  L  *  I  A  *  T  M  F  V  G  V  Q  F  N  *  F  F  N  E  L  N  *  V  C  E  V  A  R  E  L  F  *  F  C  N  N  R  C  N  C  C  L  T  S  H  V  M  Y  L  I  H  V  V  L  *   : *  E  I  E  :  F  I  *  I  S  S  L  H  S  K  K  I  K  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36405" stop="36965"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFIPKLSDFGLAKSYPTDKSIVTLTAVRGTIGYVAPELINRSIGPISCKADVYSFGMLLIDIVGLKTNSVAREDMSSQYFPHWIYDQLDKGKEIEVLDETHEDVKKLTLVALWCIQMNPLDHPSMTRVVEMLEGDLQALQTPPRSSESREPCSLEFNLTSSSMNSTESVKLLESCSDSAIIDVIVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36439" e_stop="37004"/>
            <exon e_start="37214" e_stop="37224"/>
            <exon e_start="37895" e_stop="37926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.930"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="0.545"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="36439" e_stop="37004" e_length="566"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37005" i_stop="37213" i_length="209"/>
          </intron>
          <exon e_serial="2" e_score="0.545">
            <gDNA_exon_boundary e_start="37214" e_stop="37224" e_length="11"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37225" i_stop="37894" i_length="670"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="37895" e_stop="37926" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36439" stop="36999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412493" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36457" stop="37004"/>
              <exon start="37214" stop="37224"/>
              <exon start="37895" stop="37926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411585" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATCATACCCGACGGATAAGAGCATTGTTACTCTAACAGCAGTCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTGTAAGGCAGATGTTTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGTAGCCAGAGAGGATATGTCAAGCCAATACTTCCCACATTGGATATATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGAAGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCATCCTTCAATGACTAGAGTAGTGGAAATGCTTGAAGGCGATTTACAAGCATTGCAAACGCCTCCTAGGTCCTCTGAATCGCGTGAACCATGTTCGTTGGAGTTCAATTTAACTAGTTCTTCAATGAACTCAACTGAGTCTGTGAAGTTGCTAGAGAGTTGTTCTGATTCTGCAATAATAGATGTAATTGTTGTTTGACATCACACGTTATGTACCTAATTCATGTTGTTTTATGAT : GAGAGATAGAG : ATCATGACTCATTAATATTAAAAAAAAAAAAG</gDNA_template>
            <first_frame> Q  N  H  T  R  R  I  R  A  L  L  L  *  Q  Q  S  G  E  Q  L  V  M  *  L  Q  S  *  S  T  E  A  L  V  Q  Y  L  V  R  Q  M  F  I  A  L  E  C  Y  S  L  I  S  *  A  *  K  Q  T  R  *  P  E  R  I  C  Q  A  N  T  S  H  I  G  Y  M  I  S  S  T  R  E  R  R  L  K  Y  *  T  R  H  M  K  T  *  R  S  *  L  *  L  L  C  G  A  Y  K  *  I  H  S  I  I  L  Q  *  L  E  *  W  K  C  L  K  A  I  Y  K  H  C  K  R  L  L  G  P  L  N  R  V  N  H  V  R  W  S  S  I  *  L  V  L  Q  *  T  Q  L  S  L  *  S  C  *  R  V  V  L  I  L  Q  *  *  M  *  L  L  F  D  I  T  R  Y  V  P  N  S  C  C  F  M  M :   R  D  R   : D  H  D  S  L  I  L  K  K  K  K </first_frame>
            <second_frame>  K  I  I  P  D  G  *  E  H  C  Y  S  N  S  S  Q  G  N  N  W  L  C  S  S  R  V  D  Q  Q  K  H  W  S  N  I  L  *  G  R  C  L  *  L  W  N  V  T  H  *  Y  R  R  L  E  N  K  L  G  S  Q  R  G  Y  V  K  P  I  L  P  T  L  D  I  *  S  A  R  Q  G  K  G  D  *  S  T  R  R  D  T  *  R  R  K  E  A  D  F  S  C  F  V  V  H  T  N  E  S  T  R  S  S  F  N  D  *  S  S  G  N  A  *  R  R  F  T  S  I  A  N  A  S  *  V  L  *  I  A  *  T  M  F  V  G  V  Q  F  N  *  F  F  N  E  L  N  *  V  C  E  V  A  R  E  L  F  *  F  C  N  N  R  C  N  C  C  L  T  S  H  V  M  Y  L  I  H  V  V  L  *   : *  E  I  E  :  I  M  T  H  *  Y  *  K  K  K   </second_frame>
            <third_frame>   K  S  Y  P  T  D  K  S  I  V  T  L  T  A  V  R  G  T  I  G  Y  V  A  P  E  L  I  N  R  S  I  G  P  I  S  C  K  A  D  V  Y  S  F  G  M  L  L  I  D  I  V  G  L  K  T  N  S  V  A  R  E  D  M  S  S  Q  Y  F  P  H  W  I  Y  D  Q  L  D  K  G  K  E  I  E  V  L  D  E  T  H  E  D  V  K  K  L  T  L  V  A  L  W  C  I  Q  M  N  P  L  D  H  P  S  M  T  R  V  V  E  M  L  E  G  D  L  Q  A  L  Q  T  P  P  R  S  S  E  S  R  E  P  C  S  L  E  F  N  L  T  S  S  S  M  N  S  T  E  S  V  K  L  L  E  S  C  S  D  S  A  I  I  D  V  I  V  V  *  H  H  T  L  C  T  *  F  M  L  F  Y  D  :  E  R  *  R :   S  *  L  I  N  I  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36441" stop="36965"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSYPTDKSIVTLTAVRGTIGYVAPELINRSIGPISCKADVYSFGMLLIDIVGLKTNSVAREDMSSQYFPHWIYDQLDKGKEIEVLDETHEDVKKLTLVALWCIQMNPLDHPSMTRVVEMLEGDLQALQTPPRSSESREPCSLEFNLTSSSMNSTESVKLLESCSDSAIIDVIVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41215" PGL_stop="41708"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41215" e_stop="41708"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41215" e_stop="41708" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41215" stop="41708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41216" stop="41708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41216" stop="41708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</gDNA_template>
            <first_frame> K  I  V  T  K  L  T  P  M  A  S  L  L  M  S  S  S  L  L  A  H  I  E  G  S  N  Y  R  R  T  R  N  E  G  F  S  S  L  S  A  H  S  N  R  R  R  V  L  K  V  N  A  F  T  K  D  E  K  I  V  K  K  K  E  E  K  K  S  I  G  S  R  R  E  W  A  L  A  I  M  A  I  V  A  T  S  S  F  A  S  V  V  M  A  E  E  P  K  A  G  T  L  E  A  K  K  K  Y  A  P  I  C  V  T  M  P  T  A  R  I  C  H  K  *  N  L  D  A  E  S  G  F  K  F  N  R  S  *  L  L  R  F  L  I  I  S  E  V  V  V  M  L  K  L  *  V  Q  V  *  Y  S  L  C  *   </first_frame>
            <second_frame>  K  *  S  Q  N  *  H  Q  W  L  L  Y  *  C  H  L  H  Y  *  P  I  S  K  D  L  T  T  G  E  P  G  T  K  G  F  P  P  S  P  R  I  Q  I  G  E  E  C  *  K  L  M  H  L  L  R  M  K  K  L  *  K  K  R  R  K  K  R  A  L  D  Q  E  G  N  G  L  *  P  *  W  L  *  *  L  Q  V  H  L  Q  V  L  L  W  L  R  N  Q  R  Q  G  H  L  R  Q  R  K  S  M  H  L  F  V  S  Q  C  Q  L  L  E  Y  V  T  S  K  I  *  T  R  N  R  D  L  S  L  I  G  R  N  F  *  D  F  *  L  L  V  K  L  L  *  C  *  N  Y  R  F  R  S  N  I  V  C  V  E  </second_frame>
            <third_frame>   N  S  H  K  T  N  T  N  G  F  F  T  N  V  I  F  I  T  S  P  Y  R  R  I  *  L  Q  E  N  Q  E  R  R  V  F  L  P  L  R  A  F  K  *  E  K  S  A  K  S  *  C  I  Y  *  G  *  K  N  C  E  K  K  G  G  K  K  E  H  W  I  K  K  G  M  G  F  S  H  N  G  Y  S  S  Y  K  F  I  C  K  C  C  Y  G  *  G  T  K  G  R  D  T  *  G  K  E  K  V  C  T  Y  L  C  H  N  A  N  C  *  N  M  S  Q  V  K  F  R  R  G  I  G  I  *  V  *  *  V  V  T  F  K  I  F  N  Y  *  *  S  C  C  N  V  K  I  I  G  S  G  L  I  *  S  V  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41215" stop="41586"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIVTKLTPMASLLMSSSLLAHIEGSNYRRTRNEGFSSLSAHSNRRRVLKVNAFTKDEKIVKKKEEKKSIGSRREWALAIMAIVATSSFASVVMAEEPKAGTLEAKKKYAPICVTMPTARICHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="53988" PGL_stop="53186"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53988" e_stop="53585"/>
            <exon e_start="53198" e_stop="53186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.693" e_score="0.993"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="53988" e_stop="53585" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.693">
            <gDNA_intron_boundary i_start="53584" i_stop="53199" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="0.615">
            <gDNA_exon_boundary e_start="53198" e_stop="53186" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53988" stop="53585"/>
              <exon start="53198" stop="53186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53933" stop="53585"/>
              <exon start="53198" stop="53186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217233" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTACTACCCTTGAAGAAAGCATCAAAGAAACTGTTGAAAGTTTGAAGGAAAAGAAGTTTTTTGGAGGTTCATCTTCTATGTAAAAGGCTTCTCAAAGCTTTTATGGTTTTGTTGAACAATACTACCCACCCCACCCTACCCTACACACTTTTTTTTTTTACTTCTTTTAGCTAATTATAGAATCGAGAAGTCGAATGGTATATCCGTTAATAAATTTCGATCAGATGAGGTTGAAATTTGTTCTATATCTAGAGATTTTTACAGACTGGTTTGATAGAAGAAATTAGAACACTATTGTTGTGTTTTGTTGAGTTTGGTTTGTAGGAGAAAACCAAATGGATTTATTGATATTTGAAGATTTGTGTTGAATCCAAAATTTTCAGGCTCAATATCTAATTAATA : GGAAAAAGGACAA</gDNA_template>
            <first_frame> V  Y  Y  P  *  R  K  H  Q  R  N  C  *  K  F  E  G  K  E  V  F  W  R  F  I  F  Y  V  K  G  F  S  K  L  L  W  F  C  *  T  I  L  P  T  P  P  Y  P  T  H  F  F  F  L  L  L  L  A  N  Y  R  I  E  K  S  N  G  I  S  V  N  K  F  R  S  D  E  V  E  I  C  S  I  S  R  D  F  Y  R  L  V  *  *  K  K  L  E  H  Y  C  C  V  L  L  S  L  V  C  R  R  K  P  N  G  F  I  D  I  *  R  F  V  L  N  P  K  F  S  G  S  I  S  N  *  * :   E  K  G  Q </first_frame>
            <second_frame>  F  T  T  L  E  E  S  I  K  E  T  V  E  S  L  K  E  K  K  F  F  G  G  S  S  S  M  *  K  A  S  Q  S  F  Y  G  F  V  E  Q  Y  Y  P  P  H  P  T  L  H  T  F  F  F  Y  F  F  *  L  I  I  E  S  R  S  R  M  V  Y  P  L  I  N  F  D  Q  M  R  L  K  F  V  L  Y  L  E  I  F  T  D  W  F  D  R  R  N  *  N  T  I  V  V  F  C  *  V  W  F  V  G  E  N  Q  M  D  L  L  I  F  E  D  L  C  *  I  Q  N  F  Q  A  Q  Y  L  I  N   : R  K  K  D   </second_frame>
            <third_frame>   L  L  P  L  K  K  A  S  K  K  L  L  K  V  *  R  K  R  S  F  L  E  V  H  L  L  C  K  R  L  L  K  A  F  M  V  L  L  N  N  T  T  H  P  T  L  P  Y  T  L  F  F  F  T  S  F  S  *  L  *  N  R  E  V  E  W  Y  I  R  *  *  I  S  I  R  *  G  *  N  L  F  Y  I  *  R  F  L  Q  T  G  L  I  E  E  I  R  T  L  L  L  C  F  V  E  F  G  L  *  E  K  T  K  W  I  Y  *  Y  L  K  I  C  V  E  S  K  I  F  R  L  N  I  *  L  I  :  G  K  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0262O22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="59782" PGL_stop="55894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59782" e_stop="59671"/>
            <exon e_start="58224" e_stop="58055"/>
            <exon e_start="57018" e_stop="56827"/>
            <exon e_start="56041" e_stop="55894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59782" e_stop="59671" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59670" i_stop="58225" i_length="1446"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58224" e_stop="58055" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.892" acc_prob="0.921">
            <gDNA_intron_boundary i_start="58054" i_stop="57019" i_length="1036"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57018" e_stop="56827" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.974">
            <gDNA_intron_boundary i_start="56826" i_stop="56042" i_length="785"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56041" e_stop="55894" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59782" stop="59671"/>
              <exon start="58224" stop="58055"/>
              <exon start="57018" stop="56827"/>
              <exon start="56041" stop="55969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59782" stop="59671"/>
              <exon start="58224" stop="58055"/>
              <exon start="57018" stop="56827"/>
              <exon start="56041" stop="55988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59780" stop="59671"/>
              <exon start="58224" stop="58055"/>
              <exon start="57018" stop="56827"/>
              <exon start="56041" stop="55894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59775" stop="59671"/>
              <exon start="58224" stop="58055"/>
              <exon start="57018" stop="56884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGACAGCGAAAACAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATAGTGGTTACAATGTGAAGGCTTCTGTTCGTGATCCAA : ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAG : GCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAG : CTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGCATTGATATGGTTGTAGTAAACCCTGCTATGGTTATTGGTCCTCTGTTACAGCCTACACTTAATACCAGTTCTGCTGCAGTCT</gDNA_template>
            <first_frame> V  T  A  K  T  V  C  V  T  G  A  S  G  Y  I  A  S  W  L  V  K  F  L  L  H  S  G  Y  N  V  K  A  S  V  R  D  P   : N  D  P  K  K  T  Q  H  L  L  S  L  G  G  A  K  E  R  L  H  L  F  K  A  N  L  L  E  E  G  S  F  D  A  V  V  D  G  C  E  G  V  F  H  T  A  S  P  F  Y  Y  S  V  T  D  P  Q  :  A  E  L  L  D  P  A  V  K  G  T  L  N  L  L  G  S  C  A  K  A  P  S  V  K  R  V  V  L  T  S  S  I  A  A  V  A  Y  S  G  Q  P  R  T  P  E  V  V  V  D  E  S  W  W  T  S  P  D  Y  C  K  E  K  Q  :  L  W  Y  V  L  S  K  T  L  A  E  D  A  A  W  K  F  V  K  E  K  G  I  D  M  V  V  V  N  P  A  M  V  I  G  P  L  L  Q  P  T  L  N  T  S  S  A  A  V  </first_frame>
            <second_frame>  *  Q  R  K  Q  C  V  *  Q  E  L  Q  V  T  *  L  H  G  *  S  N  S  C  Y  I  V  V  T  M  *  R  L  L  F  V  I  Q  :  M  I  P  R  K  R  S  T  C  F  L  L  V  G  P  R  R  G  F  T  C  S  K  Q  T  Y  *  K  K  V  H  L  M  L  *  L  M  D  V  K  V  Y  S  I  Q  R  L  L  F  T  T  L  L  Q  T  H  R :   L  N  Y  L  I  L  L  L  R  E  H  S  I  F  S  G  H  V  P  K  H  H  Q  *  N  E  L  F  *  R  L  P  *  L  Q  L  L  T  V  V  S  L  G  H  L  R  L  W  L  M  R  A  G  G  P  V  Q  T  T  A  K  K  N  S :   S  G  M  S  S  Q  R  H  W  L  R  M  L  R  G  S  L  *  R  R  K  A  L  I  W  L  *  *  T  L  L  W  L  L  V  L  C  Y  S  L  H  L  I  P  V  L  L  Q  S </second_frame>
            <third_frame>   D  S  E  N  S  V  C  N  R  S  F  R  L  H  S  F  M  A  S  Q  I  L  A  T  *  W  L  Q  C  E  G  F  C  S  *  S  K :   *  S  Q  E  N  A  A  L  A  F  S  W  W  G  Q  G  E  A  S  L  V  Q  S  K  P  I  R  R  R  F  I  *  C  C  S  *  W  M  *  R  C  I  P  Y  S  V  S  F  L  L  L  C  Y  R  P  T   : G  *  I  T  *  S  C  C  *  G  N  T  Q  S  S  R  V  M  C  Q  S  T  I  S  K  T  S  C  F  N  V  F  H  S  C  S  C  L  Q  W  S  A  S  D  T  *  G  C  G  *  *  E  L  V  D  Q  S  R  L  L  Q  R  K  T   : A  L  V  C  P  L  K  D  I  G  *  G  C  C  V  E  V  C  E  G  E  R  H  *  Y  G  C  S  K  P  C  Y  G  Y  W  S  S  V  T  A  Y  T  *  Y  Q  F  C  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59782" stop="59671"/>
                    <exon start="58224" stop="58055"/>
                    <exon start="57018" stop="56827"/>
                    <exon start="56041" stop="55895"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTAKTVCVTGASGYIASWLVKFLLHSGYNVKASVRDPNDPKKTQHLLSLGGAKERLHLFKANLLEEGSFDAVVDGCEGVFHTASPFYYSVTDPQAELLDPAVKGTLNLLGSCAKAPSVKRVVLTSSIAAVAYSGQPRTPEVVVDESWWTSPDYCKEKQLWYVLSKTLAEDAAWKFVKEKGIDMVVVNPAMVIGPLLQPTLNTSSAAV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="72860" PGL_stop="69011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72860" e_stop="72660"/>
            <exon e_start="71645" e_stop="71476"/>
            <exon e_start="70918" e_stop="70727"/>
            <exon e_start="70307" e_stop="70145"/>
            <exon e_start="70010" e_stop="69824"/>
            <exon e_start="69657" e_stop="69244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.862" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72860" e_stop="72660" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.862" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71645" e_stop="71476" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70918" e_stop="70727" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70307" e_stop="70145" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70010" e_stop="69824" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="69657" e_stop="69244" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72860" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72852" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72829" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72822" stop="72660"/>
              <exon start="71645" stop="71476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72820" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72820" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72814" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72810" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72805" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72805" stop="72660"/>
              <exon start="71645" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72803" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72798" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72790" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72790" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72789" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72789" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72786" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72785" stop="72660"/>
              <exon start="71645" stop="71546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72744" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72708" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71612" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71591" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71591" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71530" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70881" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70881" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70814" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70793" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70278" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69613" stop="69334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATATCTCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA : ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG : GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG : CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG : GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA : GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTACCAGGATGGTTCTGTATGTTTTTCTT</gDNA_template>
            <first_frame> C  I  S  L  L  S  A  F  T  P  L  S  L  L  H  R  V  L  L  G  E  K  K  E  R  E  S  S  Q  K  W  R  *  E  Q  Y  V  *  Q  E  L  Q  A  T  *  L  H  G  *  S  N  F  C  F  S  V  V  I  L  L  K  L  L  F  A  I  S  :  M  I  K  K  R  *  I  T  *  H  P  W  M  E  L  R  R  D  S  T  C  S  K  R  T  Y  W  K  K  V  P  L  M  L  L  L  R  G  V  K  A  C  F  I  Q  H  L  L  F  T  L  E  S  R  I  H  R :   W  R  *  L  I  L  H  *  R  G  H  L  M  F  L  D  Q  L  Q  R  H  H  L  L  E  E  W  S  *  H  H  L  L  Q  Q  L  L  S  M  A  S  Q  E  P  L  K  W  W  L  M  K  H  G  G  Q  I  L  T  F  A  E  N  H  S :   S  G  M  C  F  R  R  H  *  L  R  M  L  R  G  S  L  *  K  R  K  L  S  I  W  L  Q  *  T  Q  Q  W  L  *  A  V  C  C  N  Q  R  L  I  Q  V  L  L  L  S  Y  N  C  *  M  :  V  L  K  H  T  Q  I  L  H  L  V  G  L  T  *  K  M  S  P  L  H  I  F  W  H  L  K  T  L  Q  L  M  V  D  I  *  W  W  S  Q  L  H  T  T  L  R  *  L  R  Y  Y  A  S  F  T  L  H  *  S  F  Q  K   : S  V  L  M  I  S  H  L  R  Q  R  T  R  L  T  *  K  E  P  K  N  W  V  L  N  S  F  L  W  R  K  A  S  R  K  Q  L  K  A  *  K  R  R  S  F  T  E  M  L  S  L  I  V  N  E  S  G  N  C  R  E  H  A  Y  V  H  L  H  V  L  L  K  P  F  V  L  C  R  F  V  I  R  N  F  N  G  V  V  K  F  K  H  S  V  D  V  V  E  S  K  I  R  S  M  *  S  C  V  W  R  L  Q  V  F  V  H  L  V  L  A  C  C  L  C  Y  V  Q  D  L  Y  Q  D  G  S  V  C  F  S  </first_frame>
            <second_frame>  V  Y  L  F  C  R  L  L  H  H  S  V  F  Y  T  E  C  C  *  V  K  K  K  K  E  R  A  H  K  N  G  D  E  N  S  M  C  N  R  S  F  R  L  H  S  F  M  A  S  Q  I  F  A  S  A  W  L  Y  C  *  S  Y  C  S  R  S  Q :   *  S  K  K  G  R  S  L  D  I  P  G  W  S  *  G  E  T  P  L  V  Q  S  G  P  T  G  R  R  F  L  *  C  C  C  *  G  V  *  R  R  V  S  Y  S  I  S  F  L  P  W  S  Q  G  S  T   : G  G  D  D  *  S  C  T  E  G  D  T  *  C  S  W  I  S  C  K  D  T  I  C  *  K  S  G  L  D  I  I  C  C  S  S  C  F  Q  W  Q  A  K  N  P  *  S  G  G  *  *  N  M  V  V  R  S  *  L  L  Q  R  I  T   : A  L  V  C  A  F  E  D  I  S  *  G  C  C  V  E  V  C  E  R  E  S  F  R  Y  G  Y  N  K  P  S  N  G  Y  R  R  F  V  A  T  N  A  *  Y  K  C  C  C  Y  L  T  T  A  K  W :   F  *  N  I  P  K  F  Y  I  W  L  G  *  R  E  R  C  R  P  C  T  Y  S  G  I  *  K  P  F  S  *  W  *  I  F  N  G  G  V  S  C  T  L  L  *  D  S  *  D  I  T  R  A  L  P  Y  T  E  A  S  R  K  :  V  C  *  *  *  A  I  Y  A  N  V  P  G  *  R  R  K  S  Q  K  I  G  Y  *  I  H  S  F  G  G  K  R  Q  G  N  S  *  K  L  E  R  E  E  V  L  L  K  C  L  A  L  L  *  M  N  L  E  I  V  E  N  M  L  M  Y  T  F  M  F  Y  *  N  L  S  Y  Y  V  V  L  *  S  A  T  L  M  V  S  L  S  L  N  I  P  W  M  *  L  N  Q  R  Y  D  R  C  D  L  V  F  G  G  Y  K  C  L  C  I  W  F  W  L  V  V  Y  V  M  C  K  I  C  T  R  M  V  L  Y  V  F  L </second_frame>
            <third_frame>   Y  I  S  F  V  G  F  Y  T  T  Q  S  S  T  Q  S  A  V  R  *  K  K  R  K  R  E  L  T  K  M  A  M  R  T  V  C  V  T  G  A  S  G  Y  I  A  S  W  L  V  K  F  L  L  Q  R  G  Y  T  V  K  A  T  V  R  D  L   : N  D  Q  K  K  V  D  H  L  T  S  L  D  G  A  K  E  R  L  H  L  F  K  A  D  L  L  E  E  G  S  F  D  A  V  V  E  G  C  E  G  V  F  H  T  A  S  P  F  Y  L  G  V  K  D  P  Q  :  V  E  M  I  D  P  A  L  K  G  T  L  N  V  L  G  S  V  A  K  T  P  S  V  R  R  V  V  L  T  S  S  V  A  A  V  A  F  N  G  K  P  R  T  P  E  V  V  V  D  E  T  W  W  S  D  P  D  F  C  R  E  S  Q  :  L  W  Y  V  L  S  K  T  L  A  E  D  A  A  W  K  F  V  K  E  K  A  F  D  M  V  T  I  N  P  A  M  V  I  G  G  L  L  Q  P  T  L  N  T  S  A  A  A  I  L  Q  L  L  N   : G  S  E  T  Y  P  N  S  T  F  G  W  V  N  V  K  D  V  A  L  A  H  I  L  A  F  E  N  P  S  A  N  G  R  Y  L  M  V  E  S  V  A  H  Y  S  E  I  V  K  I  L  R  E  L  Y  P  T  L  K  L  P  E  K :   C  A  D  D  K  P  F  T  P  T  Y  Q  V  N  V  E  R  A  K  K  L  G  I  E  F  I  P  L  A  E  S  V  K  E  T  A  E  S  L  K  E  K  K  F  Y  *  N  A  *  P  Y  C  E  *  I  W  K  L  *  R  T  C  L  C  T  P  S  C  F  T  K  T  F  R  I  M  S  F  C  D  P  Q  L  *  W  C  R  *  V  *  T  F  R  G  C  S  *  I  K  D  T  I  D  V  I  L  C  L  E  V  T  S  V  C  A  F  G  F  G  L  L  F  M  L  C  A  R  S  V  P  G  W  F  C  M  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72798" stop="72660"/>
                    <exon start="71645" stop="71476"/>
                    <exon start="70918" stop="70727"/>
                    <exon start="70307" stop="70145"/>
                    <exon start="70010" stop="69824"/>
                    <exon start="69657" stop="69519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRKRELTKMAMRTVCVTGASGYIASWLVKFLLQRGYTVKATVRDLNDQKKVDHLTSLDGAKERLHLFKADLLEEGSFDAVVEGCEGVFHTASPFYLGVKDPQVEMIDPALKGTLNVLGSVAKTPSVRRVVLTSSVAAVAFNGKPRTPEVVVDETWWSDPDFCRESQLWYVLSKTLAEDAAWKFVKEKAFDMVTINPAMVIGGLLQPTLNTSAAAILQLLNGSETYPNSTFGWVNVKDVALAHILAFENPSANGRYLMVESVAHYSEIVKILRELYPTLKLPEKCADDKPFTPTYQVNVERAKKLGIEFIPLAESVKETAESLKEKKFY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69538" stop="69344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRSFTEMLSLIVNESGNCREHAYVHLHVLLKPFVLCRFVIRNFNGVVKFKHSVDVVESKIRSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72860" e_stop="72660"/>
            <exon e_start="71645" e_stop="71476"/>
            <exon e_start="70918" e_stop="70727"/>
            <exon e_start="70307" e_stop="70145"/>
            <exon e_start="70010" e_stop="69824"/>
            <exon e_start="69657" e_stop="69317"/>
            <exon e_start="69131" e_stop="69102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.862" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.452" e_score="0.982"/>
          <exon-only e_score="0.433"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72860" e_stop="72660" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.862" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71645" e_stop="71476" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70918" e_stop="70727" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70307" e_stop="70145" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70010" e_stop="69824" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="69657" e_stop="69317" e_length="341"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.452">
            <gDNA_intron_boundary i_start="69316" i_stop="69132" i_length="185"/>
          </intron>
          <exon e_serial="7" e_score="0.433">
            <gDNA_exon_boundary e_start="69131" e_stop="69102" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72860" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72852" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72829" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72822" stop="72660"/>
              <exon start="71645" stop="71476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72820" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72820" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72814" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72810" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72805" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72805" stop="72660"/>
              <exon start="71645" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72803" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72798" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72790" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72790" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72789" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72789" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72786" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72785" stop="72660"/>
              <exon start="71645" stop="71546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72744" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72708" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71612" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71591" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71591" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71530" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70881" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70881" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70793" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69915" stop="69824"/>
              <exon start="69657" stop="69317"/>
              <exon start="69131" stop="69102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243476" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69613" stop="69334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATATCTCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA : ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG : GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG : CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG : GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA : GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTT : AGCTATGGGAAAATTTCATGCATAGCCATT</gDNA_template>
            <first_frame> C  I  S  L  L  S  A  F  T  P  L  S  L  L  H  R  V  L  L  G  E  K  K  E  R  E  S  S  Q  K  W  R  *  E  Q  Y  V  *  Q  E  L  Q  A  T  *  L  H  G  *  S  N  F  C  F  S  V  V  I  L  L  K  L  L  F  A  I  S  :  M  I  K  K  R  *  I  T  *  H  P  W  M  E  L  R  R  D  S  T  C  S  K  R  T  Y  W  K  K  V  P  L  M  L  L  L  R  G  V  K  A  C  F  I  Q  H  L  L  F  T  L  E  S  R  I  H  R :   W  R  *  L  I  L  H  *  R  G  H  L  M  F  L  D  Q  L  Q  R  H  H  L  L  E  E  W  S  *  H  H  L  L  Q  Q  L  L  S  M  A  S  Q  E  P  L  K  W  W  L  M  K  H  G  G  Q  I  L  T  F  A  E  N  H  S :   S  G  M  C  F  R  R  H  *  L  R  M  L  R  G  S  L  *  K  R  K  L  S  I  W  L  Q  *  T  Q  Q  W  L  *  A  V  C  C  N  Q  R  L  I  Q  V  L  L  L  S  Y  N  C  *  M  :  V  L  K  H  T  Q  I  L  H  L  V  G  L  T  *  K  M  S  P  L  H  I  F  W  H  L  K  T  L  Q  L  M  V  D  I  *  W  W  S  Q  L  H  T  T  L  R  *  L  R  Y  Y  A  S  F  T  L  H  *  S  F  Q  K   : S  V  L  M  I  S  H  L  R  Q  R  T  R  L  T  *  K  E  P  K  N  W  V  L  N  S  F  L  W  R  K  A  S  R  K  Q  L  K  A  *  K  R  R  S  F  T  E  M  L  S  L  I  V  N  E  S  G  N  C  R  E  H  A  Y  V  H  L  H  V  L  L  K  P  F  V  L  C  R  F  V  I  R  N  F  N  G  V  V  K  F  K  H  S  V  D  V  V  E  S  K  I  R  S  M  *  S  C  V  W  R  L  Q  V  F  :  S  Y  G  K  I  S  C  I  A  I </first_frame>
            <second_frame>  V  Y  L  F  C  R  L  L  H  H  S  V  F  Y  T  E  C  C  *  V  K  K  K  K  E  R  A  H  K  N  G  D  E  N  S  M  C  N  R  S  F  R  L  H  S  F  M  A  S  Q  I  F  A  S  A  W  L  Y  C  *  S  Y  C  S  R  S  Q :   *  S  K  K  G  R  S  L  D  I  P  G  W  S  *  G  E  T  P  L  V  Q  S  G  P  T  G  R  R  F  L  *  C  C  C  *  G  V  *  R  R  V  S  Y  S  I  S  F  L  P  W  S  Q  G  S  T   : G  G  D  D  *  S  C  T  E  G  D  T  *  C  S  W  I  S  C  K  D  T  I  C  *  K  S  G  L  D  I  I  C  C  S  S  C  F  Q  W  Q  A  K  N  P  *  S  G  G  *  *  N  M  V  V  R  S  *  L  L  Q  R  I  T   : A  L  V  C  A  F  E  D  I  S  *  G  C  C  V  E  V  C  E  R  E  S  F  R  Y  G  Y  N  K  P  S  N  G  Y  R  R  F  V  A  T  N  A  *  Y  K  C  C  C  Y  L  T  T  A  K  W :   F  *  N  I  P  K  F  Y  I  W  L  G  *  R  E  R  C  R  P  C  T  Y  S  G  I  *  K  P  F  S  *  W  *  I  F  N  G  G  V  S  C  T  L  L  *  D  S  *  D  I  T  R  A  L  P  Y  T  E  A  S  R  K  :  V  C  *  *  *  A  I  Y  A  N  V  P  G  *  R  R  K  S  Q  K  I  G  Y  *  I  H  S  F  G  G  K  R  Q  G  N  S  *  K  L  E  R  E  E  V  L  L  K  C  L  A  L  L  *  M  N  L  E  I  V  E  N  M  L  M  Y  T  F  M  F  Y  *  N  L  S  Y  Y  V  V  L  *  S  A  T  L  M  V  S  L  S  L  N  I  P  W  M  *  L  N  Q  R  Y  D  R  C  D  L  V  F  G  G  Y  K  C  L :   A  M  G  K  F  H  A  *  P   </second_frame>
            <third_frame>   Y  I  S  F  V  G  F  Y  T  T  Q  S  S  T  Q  S  A  V  R  *  K  K  R  K  R  E  L  T  K  M  A  M  R  T  V  C  V  T  G  A  S  G  Y  I  A  S  W  L  V  K  F  L  L  Q  R  G  Y  T  V  K  A  T  V  R  D  L   : N  D  Q  K  K  V  D  H  L  T  S  L  D  G  A  K  E  R  L  H  L  F  K  A  D  L  L  E  E  G  S  F  D  A  V  V  E  G  C  E  G  V  F  H  T  A  S  P  F  Y  L  G  V  K  D  P  Q  :  V  E  M  I  D  P  A  L  K  G  T  L  N  V  L  G  S  V  A  K  T  P  S  V  R  R  V  V  L  T  S  S  V  A  A  V  A  F  N  G  K  P  R  T  P  E  V  V  V  D  E  T  W  W  S  D  P  D  F  C  R  E  S  Q  :  L  W  Y  V  L  S  K  T  L  A  E  D  A  A  W  K  F  V  K  E  K  A  F  D  M  V  T  I  N  P  A  M  V  I  G  G  L  L  Q  P  T  L  N  T  S  A  A  A  I  L  Q  L  L  N   : G  S  E  T  Y  P  N  S  T  F  G  W  V  N  V  K  D  V  A  L  A  H  I  L  A  F  E  N  P  S  A  N  G  R  Y  L  M  V  E  S  V  A  H  Y  S  E  I  V  K  I  L  R  E  L  Y  P  T  L  K  L  P  E  K :   C  A  D  D  K  P  F  T  P  T  Y  Q  V  N  V  E  R  A  K  K  L  G  I  E  F  I  P  L  A  E  S  V  K  E  T  A  E  S  L  K  E  K  K  F  Y  *  N  A  *  P  Y  C  E  *  I  W  K  L  *  R  T  C  L  C  T  P  S  C  F  T  K  T  F  R  I  M  S  F  C  D  P  Q  L  *  W  C  R  *  V  *  T  F  R  G  C  S  *  I  K  D  T  I  D  V  I  L  C  L  E  V  T  S  V   : *  L  W  E  N  F  M  H  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72798" stop="72660"/>
                    <exon start="71645" stop="71476"/>
                    <exon start="70918" stop="70727"/>
                    <exon start="70307" stop="70145"/>
                    <exon start="70010" stop="69824"/>
                    <exon start="69657" stop="69519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRKRELTKMAMRTVCVTGASGYIASWLVKFLLQRGYTVKATVRDLNDQKKVDHLTSLDGAKERLHLFKADLLEEGSFDAVVEGCEGVFHTASPFYLGVKDPQVEMIDPALKGTLNVLGSVAKTPSVRRVVLTSSVAAVAFNGKPRTPEVVVDETWWSDPDFCRESQLWYVLSKTLAEDAAWKFVKEKAFDMVTINPAMVIGGLLQPTLNTSAAAILQLLNGSETYPNSTFGWVNVKDVALAHILAFENPSANGRYLMVESVAHYSEIVKILRELYPTLKLPEKCADDKPFTPTYQVNVERAKKLGIEFIPLAESVKETAESLKEKKFY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69538" stop="69344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRSFTEMLSLIVNESGNCREHAYVHLHVLLKPFVLCRFVIRNFNGVVKFKHSVDVVESKIRSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="72860" e_stop="72660"/>
            <exon e_start="71645" e_stop="71476"/>
            <exon e_start="70918" e_stop="70727"/>
            <exon e_start="70307" e_stop="70145"/>
            <exon e_start="70010" e_stop="69824"/>
            <exon e_start="69657" e_stop="69330"/>
            <exon e_start="69034" e_stop="69011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.862" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.994"/>
          <exon-only e_score="0.458"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72860" e_stop="72660" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.862" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71645" e_stop="71476" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70918" e_stop="70727" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70307" e_stop="70145" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70010" e_stop="69824" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="69657" e_stop="69330" e_length="328"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69329" i_stop="69035" i_length="295"/>
          </intron>
          <exon e_serial="7" e_score="0.458">
            <gDNA_exon_boundary e_start="69034" e_stop="69011" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72860" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72852" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72829" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72822" stop="72660"/>
              <exon start="71645" stop="71476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72820" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72820" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72814" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72810" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72805" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72805" stop="72660"/>
              <exon start="71645" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72803" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72798" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72790" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72790" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72789" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72789" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72786" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72785" stop="72660"/>
              <exon start="71645" stop="71546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72744" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72708" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71612" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71591" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71591" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71530" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70881" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70881" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70793" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69826" stop="69824"/>
              <exon start="69657" stop="69330"/>
              <exon start="69034" stop="69011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69613" stop="69334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATATCTCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA : ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG : GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG : CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG : GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA : GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAG : GGAGGAGAGAGATTAGGAGATAAA</gDNA_template>
            <first_frame> C  I  S  L  L  S  A  F  T  P  L  S  L  L  H  R  V  L  L  G  E  K  K  E  R  E  S  S  Q  K  W  R  *  E  Q  Y  V  *  Q  E  L  Q  A  T  *  L  H  G  *  S  N  F  C  F  S  V  V  I  L  L  K  L  L  F  A  I  S  :  M  I  K  K  R  *  I  T  *  H  P  W  M  E  L  R  R  D  S  T  C  S  K  R  T  Y  W  K  K  V  P  L  M  L  L  L  R  G  V  K  A  C  F  I  Q  H  L  L  F  T  L  E  S  R  I  H  R :   W  R  *  L  I  L  H  *  R  G  H  L  M  F  L  D  Q  L  Q  R  H  H  L  L  E  E  W  S  *  H  H  L  L  Q  Q  L  L  S  M  A  S  Q  E  P  L  K  W  W  L  M  K  H  G  G  Q  I  L  T  F  A  E  N  H  S :   S  G  M  C  F  R  R  H  *  L  R  M  L  R  G  S  L  *  K  R  K  L  S  I  W  L  Q  *  T  Q  Q  W  L  *  A  V  C  C  N  Q  R  L  I  Q  V  L  L  L  S  Y  N  C  *  M  :  V  L  K  H  T  Q  I  L  H  L  V  G  L  T  *  K  M  S  P  L  H  I  F  W  H  L  K  T  L  Q  L  M  V  D  I  *  W  W  S  Q  L  H  T  T  L  R  *  L  R  Y  Y  A  S  F  T  L  H  *  S  F  Q  K   : S  V  L  M  I  S  H  L  R  Q  R  T  R  L  T  *  K  E  P  K  N  W  V  L  N  S  F  L  W  R  K  A  S  R  K  Q  L  K  A  *  K  R  R  S  F  T  E  M  L  S  L  I  V  N  E  S  G  N  C  R  E  H  A  Y  V  H  L  H  V  L  L  K  P  F  V  L  C  R  F  V  I  R  N  F  N  G  V  V  K  F  K  H  S  V  D  V  V  E  S  K  I  R  S  M  *  S  C  V  W  R :   E  E  R  D  *  E  I   </first_frame>
            <second_frame>  V  Y  L  F  C  R  L  L  H  H  S  V  F  Y  T  E  C  C  *  V  K  K  K  K  E  R  A  H  K  N  G  D  E  N  S  M  C  N  R  S  F  R  L  H  S  F  M  A  S  Q  I  F  A  S  A  W  L  Y  C  *  S  Y  C  S  R  S  Q :   *  S  K  K  G  R  S  L  D  I  P  G  W  S  *  G  E  T  P  L  V  Q  S  G  P  T  G  R  R  F  L  *  C  C  C  *  G  V  *  R  R  V  S  Y  S  I  S  F  L  P  W  S  Q  G  S  T   : G  G  D  D  *  S  C  T  E  G  D  T  *  C  S  W  I  S  C  K  D  T  I  C  *  K  S  G  L  D  I  I  C  C  S  S  C  F  Q  W  Q  A  K  N  P  *  S  G  G  *  *  N  M  V  V  R  S  *  L  L  Q  R  I  T   : A  L  V  C  A  F  E  D  I  S  *  G  C  C  V  E  V  C  E  R  E  S  F  R  Y  G  Y  N  K  P  S  N  G  Y  R  R  F  V  A  T  N  A  *  Y  K  C  C  C  Y  L  T  T  A  K  W :   F  *  N  I  P  K  F  Y  I  W  L  G  *  R  E  R  C  R  P  C  T  Y  S  G  I  *  K  P  F  S  *  W  *  I  F  N  G  G  V  S  C  T  L  L  *  D  S  *  D  I  T  R  A  L  P  Y  T  E  A  S  R  K  :  V  C  *  *  *  A  I  Y  A  N  V  P  G  *  R  R  K  S  Q  K  I  G  Y  *  I  H  S  F  G  G  K  R  Q  G  N  S  *  K  L  E  R  E  E  V  L  L  K  C  L  A  L  L  *  M  N  L  E  I  V  E  N  M  L  M  Y  T  F  M  F  Y  *  N  L  S  Y  Y  V  V  L  *  S  A  T  L  M  V  S  L  S  L  N  I  P  W  M  *  L  N  Q  R  Y  D  R  C  D  L  V  F  G   : G  R  R  E  I  R  R  *  </second_frame>
            <third_frame>   Y  I  S  F  V  G  F  Y  T  T  Q  S  S  T  Q  S  A  V  R  *  K  K  R  K  R  E  L  T  K  M  A  M  R  T  V  C  V  T  G  A  S  G  Y  I  A  S  W  L  V  K  F  L  L  Q  R  G  Y  T  V  K  A  T  V  R  D  L   : N  D  Q  K  K  V  D  H  L  T  S  L  D  G  A  K  E  R  L  H  L  F  K  A  D  L  L  E  E  G  S  F  D  A  V  V  E  G  C  E  G  V  F  H  T  A  S  P  F  Y  L  G  V  K  D  P  Q  :  V  E  M  I  D  P  A  L  K  G  T  L  N  V  L  G  S  V  A  K  T  P  S  V  R  R  V  V  L  T  S  S  V  A  A  V  A  F  N  G  K  P  R  T  P  E  V  V  V  D  E  T  W  W  S  D  P  D  F  C  R  E  S  Q  :  L  W  Y  V  L  S  K  T  L  A  E  D  A  A  W  K  F  V  K  E  K  A  F  D  M  V  T  I  N  P  A  M  V  I  G  G  L  L  Q  P  T  L  N  T  S  A  A  A  I  L  Q  L  L  N   : G  S  E  T  Y  P  N  S  T  F  G  W  V  N  V  K  D  V  A  L  A  H  I  L  A  F  E  N  P  S  A  N  G  R  Y  L  M  V  E  S  V  A  H  Y  S  E  I  V  K  I  L  R  E  L  Y  P  T  L  K  L  P  E  K :   C  A  D  D  K  P  F  T  P  T  Y  Q  V  N  V  E  R  A  K  K  L  G  I  E  F  I  P  L  A  E  S  V  K  E  T  A  E  S  L  K  E  K  K  F  Y  *  N  A  *  P  Y  C  E  *  I  W  K  L  *  R  T  C  L  C  T  P  S  C  F  T  K  T  F  R  I  M  S  F  C  D  P  Q  L  *  W  C  R  *  V  *  T  F  R  G  C  S  *  I  K  D  T  I  D  V  I  L  C  L  E  :  G  G  E  R  L  G  D  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72798" stop="72660"/>
                    <exon start="71645" stop="71476"/>
                    <exon start="70918" stop="70727"/>
                    <exon start="70307" stop="70145"/>
                    <exon start="70010" stop="69824"/>
                    <exon start="69657" stop="69519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRKRELTKMAMRTVCVTGASGYIASWLVKFLLQRGYTVKATVRDLNDQKKVDHLTSLDGAKERLHLFKADLLEEGSFDAVVEGCEGVFHTASPFYLGVKDPQVEMIDPALKGTLNVLGSVAKTPSVRRVVLTSSVAAVAFNGKPRTPEVVVDETWWSDPDFCRESQLWYVLSKTLAEDAAWKFVKEKAFDMVTINPAMVIGGLLQPTLNTSAAAILQLLNGSETYPNSTFGWVNVKDVALAHILAFENPSANGRYLMVESVAHYSEIVKILRELYPTLKLPEKCADDKPFTPTYQVNVERAKKLGIEFIPLAESVKETAESLKEKKFY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69538" stop="69344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRSFTEMLSLIVNESGNCREHAYVHLHVLLKPFVLCRFVIRNFNGVVKFKHSVDVVESKIRSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="72860" e_stop="72660"/>
            <exon e_start="71645" e_stop="71476"/>
            <exon e_start="70918" e_stop="70727"/>
            <exon e_start="70307" e_stop="70145"/>
            <exon e_start="70010" e_stop="69824"/>
            <exon e_start="69657" e_stop="69323"/>
            <exon e_start="69131" e_stop="69117"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.862" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.452" e_score="0.997"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72860" e_stop="72660" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.862" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71645" e_stop="71476" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70918" e_stop="70727" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70307" e_stop="70145" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70010" e_stop="69824" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="69657" e_stop="69323" e_length="335"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.452">
            <gDNA_intron_boundary i_start="69322" i_stop="69132" i_length="191"/>
          </intron>
          <exon e_serial="7" e_score="0.400">
            <gDNA_exon_boundary e_start="69131" e_stop="69117" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72860" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72852" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72829" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72822" stop="72660"/>
              <exon start="71645" stop="71476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72820" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72820" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72814" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72810" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72805" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72805" stop="72660"/>
              <exon start="71645" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72803" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72798" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72790" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72790" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72789" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72789" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72786" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72785" stop="72660"/>
              <exon start="71645" stop="71546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72744" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72708" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71612" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71591" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71591" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71530" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70881" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70881" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70793" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69920" stop="69824"/>
              <exon start="69657" stop="69323"/>
              <exon start="69131" stop="69117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69613" stop="69334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATATCTCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA : ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG : GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG : CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG : GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA : GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAA : AGCTATGGGAAAATT</gDNA_template>
            <first_frame> C  I  S  L  L  S  A  F  T  P  L  S  L  L  H  R  V  L  L  G  E  K  K  E  R  E  S  S  Q  K  W  R  *  E  Q  Y  V  *  Q  E  L  Q  A  T  *  L  H  G  *  S  N  F  C  F  S  V  V  I  L  L  K  L  L  F  A  I  S  :  M  I  K  K  R  *  I  T  *  H  P  W  M  E  L  R  R  D  S  T  C  S  K  R  T  Y  W  K  K  V  P  L  M  L  L  L  R  G  V  K  A  C  F  I  Q  H  L  L  F  T  L  E  S  R  I  H  R :   W  R  *  L  I  L  H  *  R  G  H  L  M  F  L  D  Q  L  Q  R  H  H  L  L  E  E  W  S  *  H  H  L  L  Q  Q  L  L  S  M  A  S  Q  E  P  L  K  W  W  L  M  K  H  G  G  Q  I  L  T  F  A  E  N  H  S :   S  G  M  C  F  R  R  H  *  L  R  M  L  R  G  S  L  *  K  R  K  L  S  I  W  L  Q  *  T  Q  Q  W  L  *  A  V  C  C  N  Q  R  L  I  Q  V  L  L  L  S  Y  N  C  *  M  :  V  L  K  H  T  Q  I  L  H  L  V  G  L  T  *  K  M  S  P  L  H  I  F  W  H  L  K  T  L  Q  L  M  V  D  I  *  W  W  S  Q  L  H  T  T  L  R  *  L  R  Y  Y  A  S  F  T  L  H  *  S  F  Q  K   : S  V  L  M  I  S  H  L  R  Q  R  T  R  L  T  *  K  E  P  K  N  W  V  L  N  S  F  L  W  R  K  A  S  R  K  Q  L  K  A  *  K  R  R  S  F  T  E  M  L  S  L  I  V  N  E  S  G  N  C  R  E  H  A  Y  V  H  L  H  V  L  L  K  P  F  V  L  C  R  F  V  I  R  N  F  N  G  V  V  K  F  K  H  S  V  D  V  V  E  S  K  I  R  S  M  *  S  C  V  W  R  L  Q  :  S  Y  G  K  I </first_frame>
            <second_frame>  V  Y  L  F  C  R  L  L  H  H  S  V  F  Y  T  E  C  C  *  V  K  K  K  K  E  R  A  H  K  N  G  D  E  N  S  M  C  N  R  S  F  R  L  H  S  F  M  A  S  Q  I  F  A  S  A  W  L  Y  C  *  S  Y  C  S  R  S  Q :   *  S  K  K  G  R  S  L  D  I  P  G  W  S  *  G  E  T  P  L  V  Q  S  G  P  T  G  R  R  F  L  *  C  C  C  *  G  V  *  R  R  V  S  Y  S  I  S  F  L  P  W  S  Q  G  S  T   : G  G  D  D  *  S  C  T  E  G  D  T  *  C  S  W  I  S  C  K  D  T  I  C  *  K  S  G  L  D  I  I  C  C  S  S  C  F  Q  W  Q  A  K  N  P  *  S  G  G  *  *  N  M  V  V  R  S  *  L  L  Q  R  I  T   : A  L  V  C  A  F  E  D  I  S  *  G  C  C  V  E  V  C  E  R  E  S  F  R  Y  G  Y  N  K  P  S  N  G  Y  R  R  F  V  A  T  N  A  *  Y  K  C  C  C  Y  L  T  T  A  K  W :   F  *  N  I  P  K  F  Y  I  W  L  G  *  R  E  R  C  R  P  C  T  Y  S  G  I  *  K  P  F  S  *  W  *  I  F  N  G  G  V  S  C  T  L  L  *  D  S  *  D  I  T  R  A  L  P  Y  T  E  A  S  R  K  :  V  C  *  *  *  A  I  Y  A  N  V  P  G  *  R  R  K  S  Q  K  I  G  Y  *  I  H  S  F  G  G  K  R  Q  G  N  S  *  K  L  E  R  E  E  V  L  L  K  C  L  A  L  L  *  M  N  L  E  I  V  E  N  M  L  M  Y  T  F  M  F  Y  *  N  L  S  Y  Y  V  V  L  *  S  A  T  L  M  V  S  L  S  L  N  I  P  W  M  *  L  N  Q  R  Y  D  R  C  D  L  V  F  G  G  Y  K :   A  M  G  K   </second_frame>
            <third_frame>   Y  I  S  F  V  G  F  Y  T  T  Q  S  S  T  Q  S  A  V  R  *  K  K  R  K  R  E  L  T  K  M  A  M  R  T  V  C  V  T  G  A  S  G  Y  I  A  S  W  L  V  K  F  L  L  Q  R  G  Y  T  V  K  A  T  V  R  D  L   : N  D  Q  K  K  V  D  H  L  T  S  L  D  G  A  K  E  R  L  H  L  F  K  A  D  L  L  E  E  G  S  F  D  A  V  V  E  G  C  E  G  V  F  H  T  A  S  P  F  Y  L  G  V  K  D  P  Q  :  V  E  M  I  D  P  A  L  K  G  T  L  N  V  L  G  S  V  A  K  T  P  S  V  R  R  V  V  L  T  S  S  V  A  A  V  A  F  N  G  K  P  R  T  P  E  V  V  V  D  E  T  W  W  S  D  P  D  F  C  R  E  S  Q  :  L  W  Y  V  L  S  K  T  L  A  E  D  A  A  W  K  F  V  K  E  K  A  F  D  M  V  T  I  N  P  A  M  V  I  G  G  L  L  Q  P  T  L  N  T  S  A  A  A  I  L  Q  L  L  N   : G  S  E  T  Y  P  N  S  T  F  G  W  V  N  V  K  D  V  A  L  A  H  I  L  A  F  E  N  P  S  A  N  G  R  Y  L  M  V  E  S  V  A  H  Y  S  E  I  V  K  I  L  R  E  L  Y  P  T  L  K  L  P  E  K :   C  A  D  D  K  P  F  T  P  T  Y  Q  V  N  V  E  R  A  K  K  L  G  I  E  F  I  P  L  A  E  S  V  K  E  T  A  E  S  L  K  E  K  K  F  Y  *  N  A  *  P  Y  C  E  *  I  W  K  L  *  R  T  C  L  C  T  P  S  C  F  T  K  T  F  R  I  M  S  F  C  D  P  Q  L  *  W  C  R  *  V  *  T  F  R  G  C  S  *  I  K  D  T  I  D  V  I  L  C  L  E  V  T   : K  L  W  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72798" stop="72660"/>
                    <exon start="71645" stop="71476"/>
                    <exon start="70918" stop="70727"/>
                    <exon start="70307" stop="70145"/>
                    <exon start="70010" stop="69824"/>
                    <exon start="69657" stop="69519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRKRELTKMAMRTVCVTGASGYIASWLVKFLLQRGYTVKATVRDLNDQKKVDHLTSLDGAKERLHLFKADLLEEGSFDAVVEGCEGVFHTASPFYLGVKDPQVEMIDPALKGTLNVLGSVAKTPSVRRVVLTSSVAAVAFNGKPRTPEVVVDETWWSDPDFCRESQLWYVLSKTLAEDAAWKFVKEKAFDMVTINPAMVIGGLLQPTLNTSAAAILQLLNGSETYPNSTFGWVNVKDVALAHILAFENPSANGRYLMVESVAHYSEIVKILRELYPTLKLPEKCADDKPFTPTYQVNVERAKKLGIEFIPLAESVKETAESLKEKKFY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69538" stop="69344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRSFTEMLSLIVNESGNCREHAYVHLHVLLKPFVLCRFVIRNFNGVVKFKHSVDVVESKIRSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="72860" e_stop="72660"/>
            <exon e_start="71645" e_stop="71476"/>
            <exon e_start="70918" e_stop="70727"/>
            <exon e_start="70307" e_stop="70145"/>
            <exon e_start="70010" e_stop="69824"/>
            <exon e_start="69657" e_stop="69321"/>
            <exon e_start="69131" e_stop="69100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.862" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.452" e_score="0.976"/>
          <exon-only e_score="0.375"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72860" e_stop="72660" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.862" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72659" i_stop="71646" i_length="1014"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71645" e_stop="71476" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71475" i_stop="70919" i_length="557"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70918" e_stop="70727" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="70726" i_stop="70308" i_length="419"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70307" e_stop="70145" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="70144" i_stop="70011" i_length="134"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70010" e_stop="69824" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="69823" i_stop="69658" i_length="166"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="69657" e_stop="69321" e_length="337"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.452">
            <gDNA_intron_boundary i_start="69320" i_stop="69132" i_length="189"/>
          </intron>
          <exon e_serial="7" e_score="0.375">
            <gDNA_exon_boundary e_start="69131" e_stop="69100" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72860" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72852" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72829" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72822" stop="72660"/>
              <exon start="71645" stop="71476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72820" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72820" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72814" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72810" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72805" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72805" stop="72660"/>
              <exon start="71645" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72803" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72798" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72794" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72790" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72790" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72789" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72789" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72786" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72785" stop="72660"/>
              <exon start="71645" stop="71546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72744" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72708" stop="72660"/>
              <exon start="71645" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71612" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71591" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71591" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71530" stop="71476"/>
              <exon start="70918" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70881" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70881" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70793" stop="70727"/>
              <exon start="70307" stop="70145"/>
              <exon start="70010" stop="69824"/>
              <exon start="69657" stop="69538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69982" stop="69824"/>
              <exon start="69657" stop="69321"/>
              <exon start="69131" stop="69100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236270" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69613" stop="69334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATATCTCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA : ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG : GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG : CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG : GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA : GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGT : AGCTATGGGAAAATTTCATGCATAGCCATTCA</gDNA_template>
            <first_frame> C  I  S  L  L  S  A  F  T  P  L  S  L  L  H  R  V  L  L  G  E  K  K  E  R  E  S  S  Q  K  W  R  *  E  Q  Y  V  *  Q  E  L  Q  A  T  *  L  H  G  *  S  N  F  C  F  S  V  V  I  L  L  K  L  L  F  A  I  S  :  M  I  K  K  R  *  I  T  *  H  P  W  M  E  L  R  R  D  S  T  C  S  K  R  T  Y  W  K  K  V  P  L  M  L  L  L  R  G  V  K  A  C  F  I  Q  H  L  L  F  T  L  E  S  R  I  H  R :   W  R  *  L  I  L  H  *  R  G  H  L  M  F  L  D  Q  L  Q  R  H  H  L  L  E  E  W  S  *  H  H  L  L  Q  Q  L  L  S  M  A  S  Q  E  P  L  K  W  W  L  M  K  H  G  G  Q  I  L  T  F  A  E  N  H  S :   S  G  M  C  F  R  R  H  *  L  R  M  L  R  G  S  L  *  K  R  K  L  S  I  W  L  Q  *  T  Q  Q  W  L  *  A  V  C  C  N  Q  R  L  I  Q  V  L  L  L  S  Y  N  C  *  M  :  V  L  K  H  T  Q  I  L  H  L  V  G  L  T  *  K  M  S  P  L  H  I  F  W  H  L  K  T  L  Q  L  M  V  D  I  *  W  W  S  Q  L  H  T  T  L  R  *  L  R  Y  Y  A  S  F  T  L  H  *  S  F  Q  K   : S  V  L  M  I  S  H  L  R  Q  R  T  R  L  T  *  K  E  P  K  N  W  V  L  N  S  F  L  W  R  K  A  S  R  K  Q  L  K  A  *  K  R  R  S  F  T  E  M  L  S  L  I  V  N  E  S  G  N  C  R  E  H  A  Y  V  H  L  H  V  L  L  K  P  F  V  L  C  R  F  V  I  R  N  F  N  G  V  V  K  F  K  H  S  V  D  V  V  E  S  K  I  R  S  M  *  S  C  V  W  R  L  Q  V :   A  M  G  K  F  H  A  *  P  F  </first_frame>
            <second_frame>  V  Y  L  F  C  R  L  L  H  H  S  V  F  Y  T  E  C  C  *  V  K  K  K  K  E  R  A  H  K  N  G  D  E  N  S  M  C  N  R  S  F  R  L  H  S  F  M  A  S  Q  I  F  A  S  A  W  L  Y  C  *  S  Y  C  S  R  S  Q :   *  S  K  K  G  R  S  L  D  I  P  G  W  S  *  G  E  T  P  L  V  Q  S  G  P  T  G  R  R  F  L  *  C  C  C  *  G  V  *  R  R  V  S  Y  S  I  S  F  L  P  W  S  Q  G  S  T   : G  G  D  D  *  S  C  T  E  G  D  T  *  C  S  W  I  S  C  K  D  T  I  C  *  K  S  G  L  D  I  I  C  C  S  S  C  F  Q  W  Q  A  K  N  P  *  S  G  G  *  *  N  M  V  V  R  S  *  L  L  Q  R  I  T   : A  L  V  C  A  F  E  D  I  S  *  G  C  C  V  E  V  C  E  R  E  S  F  R  Y  G  Y  N  K  P  S  N  G  Y  R  R  F  V  A  T  N  A  *  Y  K  C  C  C  Y  L  T  T  A  K  W :   F  *  N  I  P  K  F  Y  I  W  L  G  *  R  E  R  C  R  P  C  T  Y  S  G  I  *  K  P  F  S  *  W  *  I  F  N  G  G  V  S  C  T  L  L  *  D  S  *  D  I  T  R  A  L  P  Y  T  E  A  S  R  K  :  V  C  *  *  *  A  I  Y  A  N  V  P  G  *  R  R  K  S  Q  K  I  G  Y  *  I  H  S  F  G  G  K  R  Q  G  N  S  *  K  L  E  R  E  E  V  L  L  K  C  L  A  L  L  *  M  N  L  E  I  V  E  N  M  L  M  Y  T  F  M  F  Y  *  N  L  S  Y  Y  V  V  L  *  S  A  T  L  M  V  S  L  S  L  N  I  P  W  M  *  L  N  Q  R  Y  D  R  C  D  L  V  F  G  G  Y  K   : *  L  W  E  N  F  M  H  S  H  S </second_frame>
            <third_frame>   Y  I  S  F  V  G  F  Y  T  T  Q  S  S  T  Q  S  A  V  R  *  K  K  R  K  R  E  L  T  K  M  A  M  R  T  V  C  V  T  G  A  S  G  Y  I  A  S  W  L  V  K  F  L  L  Q  R  G  Y  T  V  K  A  T  V  R  D  L   : N  D  Q  K  K  V  D  H  L  T  S  L  D  G  A  K  E  R  L  H  L  F  K  A  D  L  L  E  E  G  S  F  D  A  V  V  E  G  C  E  G  V  F  H  T  A  S  P  F  Y  L  G  V  K  D  P  Q  :  V  E  M  I  D  P  A  L  K  G  T  L  N  V  L  G  S  V  A  K  T  P  S  V  R  R  V  V  L  T  S  S  V  A  A  V  A  F  N  G  K  P  R  T  P  E  V  V  V  D  E  T  W  W  S  D  P  D  F  C  R  E  S  Q  :  L  W  Y  V  L  S  K  T  L  A  E  D  A  A  W  K  F  V  K  E  K  A  F  D  M  V  T  I  N  P  A  M  V  I  G  G  L  L  Q  P  T  L  N  T  S  A  A  A  I  L  Q  L  L  N   : G  S  E  T  Y  P  N  S  T  F  G  W  V  N  V  K  D  V  A  L  A  H  I  L  A  F  E  N  P  S  A  N  G  R  Y  L  M  V  E  S  V  A  H  Y  S  E  I  V  K  I  L  R  E  L  Y  P  T  L  K  L  P  E  K :   C  A  D  D  K  P  F  T  P  T  Y  Q  V  N  V  E  R  A  K  K  L  G  I  E  F  I  P  L  A  E  S  V  K  E  T  A  E  S  L  K  E  K  K  F  Y  *  N  A  *  P  Y  C  E  *  I  W  K  L  *  R  T  C  L  C  T  P  S  C  F  T  K  T  F  R  I  M  S  F  C  D  P  Q  L  *  W  C  R  *  V  *  T  F  R  G  C  S  *  I  K  D  T  I  D  V  I  L  C  L  E  V  T  S  :  S  Y  G  K  I  S  C  I  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72798" stop="72660"/>
                    <exon start="71645" stop="71476"/>
                    <exon start="70918" stop="70727"/>
                    <exon start="70307" stop="70145"/>
                    <exon start="70010" stop="69824"/>
                    <exon start="69657" stop="69519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRKRELTKMAMRTVCVTGASGYIASWLVKFLLQRGYTVKATVRDLNDQKKVDHLTSLDGAKERLHLFKADLLEEGSFDAVVEGCEGVFHTASPFYLGVKDPQVEMIDPALKGTLNVLGSVAKTPSVRRVVLTSSVAAVAFNGKPRTPEVVVDETWWSDPDFCRESQLWYVLSKTLAEDAAWKFVKEKAFDMVTINPAMVIGGLLQPTLNTSAAAILQLLNGSETYPNSTFGWVNVKDVALAHILAFENPSANGRYLMVESVAHYSEIVKILRELYPTLKLPEKCADDKPFTPTYQVNVERAKKLGIEFIPLAESVKETAESLKEKKFY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69538" stop="69344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRSFTEMLSLIVNESGNCREHAYVHLHVLLKPFVLCRFVIRNFNGVVKFKHSVDVVESKIRSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="80696" PGL_stop="78785"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80696" e_stop="80690"/>
            <exon e_start="80573" e_stop="80495"/>
            <exon e_start="80292" e_stop="79985"/>
            <exon e_start="79581" e_stop="79042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.824" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.842" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80696" e_stop="80690" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80689" i_stop="80574" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80573" e_stop="80495" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.824">
            <gDNA_intron_boundary i_start="80494" i_stop="80293" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80292" e_stop="79985" e_length="308"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.842">
            <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79581" e_stop="79042" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80696" stop="80690"/>
              <exon start="80573" stop="80495"/>
              <exon start="80292" stop="79985"/>
              <exon start="79581" stop="79426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80696" stop="80690"/>
              <exon start="80573" stop="80495"/>
              <exon start="80292" stop="79985"/>
              <exon start="79581" stop="79455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80696" stop="80690"/>
              <exon start="80573" stop="80495"/>
              <exon start="80292" stop="79995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80559" stop="80495"/>
              <exon start="80292" stop="79985"/>
              <exon start="79581" stop="79400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80280" stop="79985"/>
              <exon start="79581" stop="79054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80276" stop="79985"/>
              <exon start="79581" stop="79479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80256" stop="79985"/>
              <exon start="79581" stop="79214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80256" stop="79985"/>
              <exon start="79581" stop="79236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80256" stop="79985"/>
              <exon start="79581" stop="79418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80220" stop="79985"/>
              <exon start="79581" stop="79401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80220" stop="79985"/>
              <exon start="79581" stop="79413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80175" stop="79985"/>
              <exon start="79581" stop="79042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTGG : GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT : ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG : GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCATTTTTT</gDNA_template>
            <first_frame> P  L   : G  S  F  N  V  Q  R  S  S  S  S  G  C  S  I  F  F  R  F  S  W  L  H  D  P  V  L :   *  *  A  L  Q  G  I  S  R  F  N  S  S  W  S  H  K  H  Y  T  E  A  S  S  P  V  S  R  D  *  R  F  S  *  K  *  S  G  *  *  R  A  H  T  C  S  Q  R  S  H  N  *  P  W  D  F  I  I  F  N  K  S  R  M  L  L  R  *  F  F  C  Y  L  R  T  R  G  W  L  N  F  I  D  N  I  W  K  H  S  I  F  S  C  S  W  R  I  N  G  P  S  S   : G  S  R  H  P  L  Y  T  Y  L  P  T  F  F  I  L  S  P  S  H  F  A  R  V  C  D  N  T  S  T  S  T  F  Q  Q  Q  R  S  C  M  G  V  I  *  W  K  R  Q  E  K  V  S  T  G  R  R  P  C  L  *  H  G  N  L  A  C  T  N  C  M  S  S  *  F  H  Q  *  L  F  T  E  H  T  *  R  S  S  L  E  F  E  E  D  A  I  F  *  W  P  S  *  D  V  I  I  S  T  N  H  L  S  G  K  E  M  R  G  F  P  N  M  T  C  F  E  A  E  R  S  *  Y  I  Y  T  P  I  Y  I  Y  K  F  K  C  R  T  N  Y  E  D  D  E  S  Q  L  *  V  L  Y  C  C  F  *  L  R  H  I  I  T  I  I  R  I  *  K  E  V  Y  T  I  F  </first_frame>
            <second_frame>  L  W  :  A  A  S  M  F  K  G  P  V  P  P  V  V  P  F  S  L  G  S  L  G  F  M  T  P  F   : Y  S  E  R  Y  K  E  Y  L  D  S  I  L  R  G  P  I  S  I  T  L  R  H  R  L  Q  C  H  V  I  R  D  S  A  K  S  D  L  D  S  E  E  P  I  L  V  L  N  E  V  T  I  D  R  G  I  S  S  F  L  T  N  L  E  C  Y  C  D  N  S  F  V  T  C  V  Q  G  D  G  L  I  L  S  T  T  S  G  S  T  A  Y  S  L  A  A  G  G  S  M  V  H  P  Q  :  V  P  G  I  L  F  T  P  I  C  P  H  S  L  S  F  R  P  L  I  L  P  E  Y  V  T  I  R  V  Q  V  P  F  N  S  R  G  H  A  W  A  S  F  D  G  K  D  R  K  K  L  A  P  G  D  A  L  V  C  S  M  A  T  W  P  V  P  T  A  C  Q  A  D  S  T  S  D  F  L  R  S  I  H  E  G  L  H  W  N  L  R  K  T  Q  S  F  D  G  P  R  E  T  *  S  S  L  L  T  I  Y  L  V  R  K  *  E  V  F  R  I  *  L  V  S  K  Q  R  D  L  D  T  Y  I  H  L  Y  I  Y  I  S  S  N  V  E  L  T  M  R  M  M  S  L  N  F  R  C  F  I  V  V  F  N  L  D  I  *  L  Q  *  *  E  Y  R  R  K  F  I  P  F  F </second_frame>
            <third_frame>   F  G :   Q  L  Q  C  S  K  V  Q  F  L  R  L  F  H  F  L  *  V  L  L  A  S  *  P  R  F  :  I  V  S  V  T  R  N  I  S  I  Q  F  F  V  V  P  *  A  L  H  *  G  I  V  S  S  V  T  *  L  E  I  Q  L  K  V  I  W  I  V  K  S  P  Y  L  F  S  T  K  S  Q  L  T  V  G  F  H  H  F  *  Q  I  *  N  A  I  A  I  I  L  L  L  L  A  Y  K  G  M  A  *  F  Y  R  Q  H  L  E  A  Q  H  I  L  L  Q  L  E  D  Q  W  S  I  L  R :   F  P  A  S  S  L  H  L  S  A  H  I  L  Y  P  F  A  L  S  F  C  P  S  M  *  Q  Y  E  Y  K  Y  L  S  T  A  E  V  M  H  G  R  H  L  M  E  K  T  G  K  S  *  H  R  E  T  P  L  F  V  A  W  Q  L  G  L  Y  Q  L  H  V  K  L  I  P  P  V  T  F  Y  G  A  Y  M  K  V  F  T  G  I  *  G  R  R  N  L  L  M  A  L  V  R  R  D  H  L  Y  *  P  F  I  W  *  G  N  E  R  F  S  E  Y  D  L  F  R  S  R  E  I  L  I  H  I  Y  T  Y  I  Y  I  *  V  Q  M  *  N  *  L  *  G  *  *  V  S  T  L  G  A  L  L  L  F  L  T  *  T  Y  N  Y  N  N  K  N  I  E  G  S  L  Y  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80695" stop="80690"/>
                    <exon start="80573" stop="80495"/>
                    <exon start="80292" stop="79985"/>
                    <exon start="79581" stop="79273"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWAASMFKGPVPPVVPFSLGSLGFMTPFYSERYKEYLDSILRGPISITLRHRLQCHVIRDSAKSDLDSEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTIRVQVPFNSRGHAWASFDGKDRKKLAPGDALVCSMATWPVPTACQADSTSDFLRSIHEGLHWNLRKTQSFDGPRET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80696" e_stop="80690"/>
            <exon e_start="80573" e_stop="80495"/>
            <exon e_start="80292" e_stop="79985"/>
            <exon e_start="79581" e_stop="79048"/>
            <exon e_start="78797" e_stop="78785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.824" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.758" e_score="1.000"/>
          <exon-only e_score="0.462"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80696" e_stop="80690" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80689" i_stop="80574" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80573" e_stop="80495" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.824">
            <gDNA_intron_boundary i_start="80494" i_stop="80293" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80292" e_stop="79985" e_length="308"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.842">
            <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79581" e_stop="79048" e_length="534"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.758">
            <gDNA_intron_boundary i_start="79047" i_stop="78798" i_length="250"/>
          </intron>
          <exon e_serial="5" e_score="0.462">
            <gDNA_exon_boundary e_start="78797" e_stop="78785" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80696" stop="80690"/>
              <exon start="80573" stop="80495"/>
              <exon start="80292" stop="79985"/>
              <exon start="79581" stop="79426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80696" stop="80690"/>
              <exon start="80573" stop="80495"/>
              <exon start="80292" stop="79985"/>
              <exon start="79581" stop="79455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80696" stop="80690"/>
              <exon start="80573" stop="80495"/>
              <exon start="80292" stop="79995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80559" stop="80495"/>
              <exon start="80292" stop="79985"/>
              <exon start="79581" stop="79400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80280" stop="79985"/>
              <exon start="79581" stop="79054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80276" stop="79985"/>
              <exon start="79581" stop="79479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80256" stop="79985"/>
              <exon start="79581" stop="79214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80256" stop="79985"/>
              <exon start="79581" stop="79236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80256" stop="79985"/>
              <exon start="79581" stop="79418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80220" stop="79985"/>
              <exon start="79581" stop="79401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80220" stop="79985"/>
              <exon start="79581" stop="79413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80080" stop="79985"/>
              <exon start="79581" stop="79048"/>
              <exon start="78797" stop="78785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTGG : GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT : ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG : GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCA : AATCTCATTAACA</gDNA_template>
            <first_frame> P  L   : G  S  F  N  V  Q  R  S  S  S  S  G  C  S  I  F  F  R  F  S  W  L  H  D  P  V  L :   *  *  A  L  Q  G  I  S  R  F  N  S  S  W  S  H  K  H  Y  T  E  A  S  S  P  V  S  R  D  *  R  F  S  *  K  *  S  G  *  *  R  A  H  T  C  S  Q  R  S  H  N  *  P  W  D  F  I  I  F  N  K  S  R  M  L  L  R  *  F  F  C  Y  L  R  T  R  G  W  L  N  F  I  D  N  I  W  K  H  S  I  F  S  C  S  W  R  I  N  G  P  S  S   : G  S  R  H  P  L  Y  T  Y  L  P  T  F  F  I  L  S  P  S  H  F  A  R  V  C  D  N  T  S  T  S  T  F  Q  Q  Q  R  S  C  M  G  V  I  *  W  K  R  Q  E  K  V  S  T  G  R  R  P  C  L  *  H  G  N  L  A  C  T  N  C  M  S  S  *  F  H  Q  *  L  F  T  E  H  T  *  R  S  S  L  E  F  E  E  D  A  I  F  *  W  P  S  *  D  V  I  I  S  T  N  H  L  S  G  K  E  M  R  G  F  P  N  M  T  C  F  E  A  E  R  S  *  Y  I  Y  T  P  I  Y  I  Y  K  F  K  C  R  T  N  Y  E  D  D  E  S  Q  L  *  V  L  Y  C  C  F  *  L  R  H  I  I  T  I  I  R  I  *  K  E  V  Y  T   : K  S  H  *   </first_frame>
            <second_frame>  L  W  :  A  A  S  M  F  K  G  P  V  P  P  V  V  P  F  S  L  G  S  L  G  F  M  T  P  F   : Y  S  E  R  Y  K  E  Y  L  D  S  I  L  R  G  P  I  S  I  T  L  R  H  R  L  Q  C  H  V  I  R  D  S  A  K  S  D  L  D  S  E  E  P  I  L  V  L  N  E  V  T  I  D  R  G  I  S  S  F  L  T  N  L  E  C  Y  C  D  N  S  F  V  T  C  V  Q  G  D  G  L  I  L  S  T  T  S  G  S  T  A  Y  S  L  A  A  G  G  S  M  V  H  P  Q  :  V  P  G  I  L  F  T  P  I  C  P  H  S  L  S  F  R  P  L  I  L  P  E  Y  V  T  I  R  V  Q  V  P  F  N  S  R  G  H  A  W  A  S  F  D  G  K  D  R  K  K  L  A  P  G  D  A  L  V  C  S  M  A  T  W  P  V  P  T  A  C  Q  A  D  S  T  S  D  F  L  R  S  I  H  E  G  L  H  W  N  L  R  K  T  Q  S  F  D  G  P  R  E  T  *  S  S  L  L  T  I  Y  L  V  R  K  *  E  V  F  R  I  *  L  V  S  K  Q  R  D  L  D  T  Y  I  H  L  Y  I  Y  I  S  S  N  V  E  L  T  M  R  M  M  S  L  N  F  R  C  F  I  V  V  F  N  L  D  I  *  L  Q  *  *  E  Y  R  R  K  F  I  P  :  N  L  I  N  </second_frame>
            <third_frame>   F  G :   Q  L  Q  C  S  K  V  Q  F  L  R  L  F  H  F  L  *  V  L  L  A  S  *  P  R  F  :  I  V  S  V  T  R  N  I  S  I  Q  F  F  V  V  P  *  A  L  H  *  G  I  V  S  S  V  T  *  L  E  I  Q  L  K  V  I  W  I  V  K  S  P  Y  L  F  S  T  K  S  Q  L  T  V  G  F  H  H  F  *  Q  I  *  N  A  I  A  I  I  L  L  L  L  A  Y  K  G  M  A  *  F  Y  R  Q  H  L  E  A  Q  H  I  L  L  Q  L  E  D  Q  W  S  I  L  R :   F  P  A  S  S  L  H  L  S  A  H  I  L  Y  P  F  A  L  S  F  C  P  S  M  *  Q  Y  E  Y  K  Y  L  S  T  A  E  V  M  H  G  R  H  L  M  E  K  T  G  K  S  *  H  R  E  T  P  L  F  V  A  W  Q  L  G  L  Y  Q  L  H  V  K  L  I  P  P  V  T  F  Y  G  A  Y  M  K  V  F  T  G  I  *  G  R  R  N  L  L  M  A  L  V  R  R  D  H  L  Y  *  P  F  I  W  *  G  N  E  R  F  S  E  Y  D  L  F  R  S  R  E  I  L  I  H  I  Y  T  Y  I  Y  I  *  V  Q  M  *  N  *  L  *  G  *  *  V  S  T  L  G  A  L  L  L  F  L  T  *  T  Y  N  Y  N  N  K  N  I  E  G  S  L  Y  Q :   I  S  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80695" stop="80690"/>
                    <exon start="80573" stop="80495"/>
                    <exon start="80292" stop="79985"/>
                    <exon start="79581" stop="79273"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWAASMFKGPVPPVVPFSLGSLGFMTPFYSERYKEYLDSILRGPISITLRHRLQCHVIRDSAKSDLDSEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTIRVQVPFNSRGHAWASFDGKDRKKLAPGDALVCSMATWPVPTACQADSTSDFLRSIHEGLHWNLRKTQSFDGPRET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="80696" e_stop="80690"/>
            <exon e_start="80573" e_stop="80495"/>
            <exon e_start="80292" e_stop="79985"/>
            <exon e_start="79581" e_stop="79051"/>
            <exon e_start="79000" e_stop="78974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.824" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.407"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80696" e_stop="80690" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80689" i_stop="80574" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80573" e_stop="80495" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.824">
            <gDNA_intron_boundary i_start="80494" i_stop="80293" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80292" e_stop="79985" e_length="308"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.842">
            <gDNA_intron_boundary i_start="79984" i_stop="79582" i_length="403"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79581" e_stop="79051" e_length="531"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="79050" i_stop="79001" i_length="50"/>
          </intron>
          <exon e_serial="5" e_score="0.407">
            <gDNA_exon_boundary e_start="79000" e_stop="78974" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80696" stop="80690"/>
              <exon start="80573" stop="80495"/>
              <exon start="80292" stop="79985"/>
              <exon start="79581" stop="79426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80696" stop="80690"/>
              <exon start="80573" stop="80495"/>
              <exon start="80292" stop="79985"/>
              <exon start="79581" stop="79455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80696" stop="80690"/>
              <exon start="80573" stop="80495"/>
              <exon start="80292" stop="79995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80559" stop="80495"/>
              <exon start="80292" stop="79985"/>
              <exon start="79581" stop="79400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80280" stop="79985"/>
              <exon start="79581" stop="79054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80276" stop="79985"/>
              <exon start="79581" stop="79479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80256" stop="79985"/>
              <exon start="79581" stop="79214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80256" stop="79985"/>
              <exon start="79581" stop="79236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80256" stop="79985"/>
              <exon start="79581" stop="79418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80220" stop="79985"/>
              <exon start="79581" stop="79401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80220" stop="79985"/>
              <exon start="79581" stop="79413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80127" stop="79985"/>
              <exon start="79581" stop="79051"/>
              <exon start="79000" stop="78974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTGG : GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT : ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG : GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATA : GTGAGTGATAAAAAGATCTATGGGAAG</gDNA_template>
            <first_frame> P  L   : G  S  F  N  V  Q  R  S  S  S  S  G  C  S  I  F  F  R  F  S  W  L  H  D  P  V  L :   *  *  A  L  Q  G  I  S  R  F  N  S  S  W  S  H  K  H  Y  T  E  A  S  S  P  V  S  R  D  *  R  F  S  *  K  *  S  G  *  *  R  A  H  T  C  S  Q  R  S  H  N  *  P  W  D  F  I  I  F  N  K  S  R  M  L  L  R  *  F  F  C  Y  L  R  T  R  G  W  L  N  F  I  D  N  I  W  K  H  S  I  F  S  C  S  W  R  I  N  G  P  S  S   : G  S  R  H  P  L  Y  T  Y  L  P  T  F  F  I  L  S  P  S  H  F  A  R  V  C  D  N  T  S  T  S  T  F  Q  Q  Q  R  S  C  M  G  V  I  *  W  K  R  Q  E  K  V  S  T  G  R  R  P  C  L  *  H  G  N  L  A  C  T  N  C  M  S  S  *  F  H  Q  *  L  F  T  E  H  T  *  R  S  S  L  E  F  E  E  D  A  I  F  *  W  P  S  *  D  V  I  I  S  T  N  H  L  S  G  K  E  M  R  G  F  P  N  M  T  C  F  E  A  E  R  S  *  Y  I  Y  T  P  I  Y  I  Y  K  F  K  C  R  T  N  Y  E  D  D  E  S  Q  L  *  V  L  Y  C  C  F  *  L  R  H  I  I  T  I  I  R  I  *  K  E  V  Y   : S  E  *  *  K  D  L  W  E  </first_frame>
            <second_frame>  L  W  :  A  A  S  M  F  K  G  P  V  P  P  V  V  P  F  S  L  G  S  L  G  F  M  T  P  F   : Y  S  E  R  Y  K  E  Y  L  D  S  I  L  R  G  P  I  S  I  T  L  R  H  R  L  Q  C  H  V  I  R  D  S  A  K  S  D  L  D  S  E  E  P  I  L  V  L  N  E  V  T  I  D  R  G  I  S  S  F  L  T  N  L  E  C  Y  C  D  N  S  F  V  T  C  V  Q  G  D  G  L  I  L  S  T  T  S  G  S  T  A  Y  S  L  A  A  G  G  S  M  V  H  P  Q  :  V  P  G  I  L  F  T  P  I  C  P  H  S  L  S  F  R  P  L  I  L  P  E  Y  V  T  I  R  V  Q  V  P  F  N  S  R  G  H  A  W  A  S  F  D  G  K  D  R  K  K  L  A  P  G  D  A  L  V  C  S  M  A  T  W  P  V  P  T  A  C  Q  A  D  S  T  S  D  F  L  R  S  I  H  E  G  L  H  W  N  L  R  K  T  Q  S  F  D  G  P  R  E  T  *  S  S  L  L  T  I  Y  L  V  R  K  *  E  V  F  R  I  *  L  V  S  K  Q  R  D  L  D  T  Y  I  H  L  Y  I  Y  I  S  S  N  V  E  L  T  M  R  M  M  S  L  N  F  R  C  F  I  V  V  F  N  L  D  I  *  L  Q  *  *  E  Y  R  R  K  F  I  :  V  S  D  K  K  I  Y  G  K </second_frame>
            <third_frame>   F  G :   Q  L  Q  C  S  K  V  Q  F  L  R  L  F  H  F  L  *  V  L  L  A  S  *  P  R  F  :  I  V  S  V  T  R  N  I  S  I  Q  F  F  V  V  P  *  A  L  H  *  G  I  V  S  S  V  T  *  L  E  I  Q  L  K  V  I  W  I  V  K  S  P  Y  L  F  S  T  K  S  Q  L  T  V  G  F  H  H  F  *  Q  I  *  N  A  I  A  I  I  L  L  L  L  A  Y  K  G  M  A  *  F  Y  R  Q  H  L  E  A  Q  H  I  L  L  Q  L  E  D  Q  W  S  I  L  R :   F  P  A  S  S  L  H  L  S  A  H  I  L  Y  P  F  A  L  S  F  C  P  S  M  *  Q  Y  E  Y  K  Y  L  S  T  A  E  V  M  H  G  R  H  L  M  E  K  T  G  K  S  *  H  R  E  T  P  L  F  V  A  W  Q  L  G  L  Y  Q  L  H  V  K  L  I  P  P  V  T  F  Y  G  A  Y  M  K  V  F  T  G  I  *  G  R  R  N  L  L  M  A  L  V  R  R  D  H  L  Y  *  P  F  I  W  *  G  N  E  R  F  S  E  Y  D  L  F  R  S  R  E  I  L  I  H  I  Y  T  Y  I  Y  I  *  V  Q  M  *  N  *  L  *  G  *  *  V  S  T  L  G  A  L  L  L  F  L  T  *  T  Y  N  Y  N  N  K  N  I  E  G  S  L  * :   *  V  I  K  R  S  M  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80695" stop="80690"/>
                    <exon start="80573" stop="80495"/>
                    <exon start="80292" stop="79985"/>
                    <exon start="79581" stop="79273"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWAASMFKGPVPPVVPFSLGSLGFMTPFYSERYKEYLDSILRGPISITLRHRLQCHVIRDSAKSDLDSEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTIRVQVPFNSRGHAWASFDGKDRKKLAPGDALVCSMATWPVPTACQADSTSDFLRSIHEGLHWNLRKTQSFDGPRET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="79055" PGL_stop="79409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79055" e_stop="79409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="79055" e_stop="79409" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79055" stop="79409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTTCCTTCTATATTCTTATTATTGTAATTATATGTCTAAGTTAAAAACAACAATAAAGCACCTAAAGTTGAGACTCATCATCCTCATAGTTAGTTCTACATTTGAACTTATATATATATATAGGTGTATATATGTATCAAGATCTCTCTGCTTCGAAACAAGTCATATTCGGAAAACCTCTCATTTCCTTACCAGATAAATGGTTAGTAGAGATGATCACGTCTCACGAGGGCCATCAAAAGATTGCGTCTTCCTCAAATTCCAGTGAAGACCTTCATGTATGCTCCGTAAAAAGTCACTGGTGGAATCAGCTTGACATGCAGTTGGTACAGGCCAAGTTGCCATGCTACAAA</gDNA_template>
            <first_frame> N  F  L  L  Y  S  Y  Y  C  N  Y  M  S  K  L  K  T  T  I  K  H  L  K  L  R  L  I  I  L  I  V  S  S  T  F  E  L  I  Y  I  Y  R  C  I  Y  V  S  R  S  L  C  F  E  T  S  H  I  R  K  T  S  H  F  L  T  R  *  M  V  S  R  D  D  H  V  S  R  G  P  S  K  D  C  V  F  L  K  F  Q  *  R  P  S  C  M  L  R  K  K  S  L  V  E  S  A  *  H  A  V  G  T  G  Q  V  A  M  L  Q  </first_frame>
            <second_frame>  T  S  F  Y  I  L  I  I  V  I  I  C  L  S  *  K  Q  Q  *  S  T  *  S  *  D  S  S  S  S  *  L  V  L  H  L  N  L  Y  I  Y  I  G  V  Y  M  Y  Q  D  L  S  A  S  K  Q  V  I  F  G  K  P  L  I  S  L  P  D  K  W  L  V  E  M  I  T  S  H  E  G  H  Q  K  I  A  S  S  S  N  S  S  E  D  L  H  V  C  S  V  K  S  H  W  W  N  Q  L  D  M  Q  L  V  Q  A  K  L  P  C  Y  K </second_frame>
            <third_frame>   L  P  S  I  F  L  L  L  *  L  Y  V  *  V  K  N  N  N  K  A  P  K  V  E  T  H  H  P  H  S  *  F  Y  I  *  T  Y  I  Y  I  *  V  Y  I  C  I  K  I  S  L  L  R  N  K  S  Y  S  E  N  L  S  F  P  Y  Q  I  N  G  *  *  R  *  S  R  L  T  R  A  I  K  R  L  R  L  P  Q  I  P  V  K  T  F  M  Y  A  P  *  K  V  T  G  G  I  S  L  T  C  S  W  Y  R  P  S  C  H  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79146" stop="79409"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLHLNLYIYIGVYMYQDLSASKQVIFGKPLISLPDKWLVEMITSHEGHQKIASSSNSSEDLHVCSVKSHWWNQLDMQLVQAKLPCYK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0262O22.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79055" stop="79255"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFLLYSYYCNYMSKLKTTIKHLKLRLIILIVSSTFELIYIYRCIYVSRSLCFETSHIRKTSHFLTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 122 chains have been computed
$ 
$ memory statistics:
$ 1064304 bytes spliced alignments in total
$ 78 spliced alignments have been stored
$ 13644 bytes was the average size of a spliced alignment
$ 19400 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 2155 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 139 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:50:30
-->
