<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:39:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325158" ref_strand="+" ref_description="SGN-E325158 [cTOC-13-N21]">
      <seq>aatccctacacaatccttatgagggagacaagtatatgaagcgtttaaacgaactaaagaaagaagtgaagaagatgatgatgacggtggagggatcacatgatgaagagttagagaagttggagttgattgataatttagagaggctcggagtgagttaccactttaaagatgaaattatgcaaatattgaggagcattaatattaatattaatatagccccaccagattcattatataccacatctttgaaatttagactcttgagacaacatggttttcatatctcacaagatgtattgaaagatttcaaagacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="7878" stop="6699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7578" g_stop="7556" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7555" i_stop="7479" i_length="77">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7478" g_stop="7208" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="294" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7207" i_stop="7025" i_length="183">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7024" g_stop="6999" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="320" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E325158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7578" e_stop="7556"/>
          <exon e_start="7478" e_stop="7208"/>
          <exon e_start="7024" e_stop="6999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCTACACAATCCTTATGAGGTACATGTACATACATTTTCTATACATTATATTCACGTCACACTTTTATTCATTTAATTTGTAAATGTGTTGCATAGGGAGACAAGTATATGAAGCGTTTAAACGAACTAAAGAAAGAAGTGAAGAAGATGATGATGACGGTGGAGGGATCACATGATGAAGAGTTAGAGAAGTTGGAGTTGATTGATAATTTAGAGAGGCTCGGAGTGAGTTACCACTTTAAAGATGAAATTATGCAAATATTGAGGAGCATTAATATTAATATTAATATAGCCCCACCAGATTCATTATATACCACATCTTTGAAATTTAGACTCTTGAGACAACATGGTTTTCATATCTCACAAGGTATAATAATACTATATTAACTGTTATTTCCTGTTCATTCATGTTTTGCTCTACGTACGCAGTCTATTTTATTGAGCCGCCCTTCATTAAATCTAAGTAATTTTTCAAAAAAATTAGCTACAATATTGTAAGAAATAGAATCTAAAGCAACTCTTACATATTTTTTTTTCTTCTTGTTTCTAGATGTATTGAAAGATTTCAAAGACGAG</genome_strand>
        <mrna_strand>AATCCCTACACAATCCTTATGAG.............................................................................GGAGACAAGTATATGAAGCGTTTAAACGAACTAAAGAAAGAAGTGAAGAAGATGATGATGACGGTGGAGGGATCACATGATGAAGAGTTAGAGAAGTTGGAGTTGATTGATAATTTAGAGAGGCTCGGAGTGAGTTACCACTTTAAAGATGAAATTATGCAAATATTGAGGAGCATTAATATTAATATTAATATAGCCCCACCAGATTCATTATATACCACATCTTTGAAATTTAGACTCTTGAGACAACATGGTTTTCATATCTCACAAG.......................................................................................................................................................................................ATGTATTGAAAGATTTCAAAGACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301762" ref_strand="+" ref_description="SGN-E301762 [cLEX-9-P14]">
      <seq>acaatgtctattagcaaatcaaatttaatttcgaaattagaggttccaaaatcctgcatttctaacgtgccaattcgacgatctggaaactatcaaccttctatttgggactataatcatattcaatcactgaagaatcattattcagacgagaaattcatgagacgccgcaatgagctgaagatggaagtgaagattatgctcagtgatcgtaacatgaagcaattggaacagttggagattattgataatttgcaaaggcttggattgtcttatcactttgaagatgaaatatacagtattttgaataacttaagtgacaaaggtagcaaaagagatcacttgtatgctaaagctcttgaattcaggctcttgagacaacatggatttaacattgtttcacaagaaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="12481" stop="11393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12182" g_stop="12036" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12035" i_stop="11952" i_length="84">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11951" g_stop="11693" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="406" r_length="259" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E301762" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12182" e_stop="12036"/>
          <exon e_start="11951" e_stop="11693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGTTTATTAGCAAACCAAATTTAATTTCGAAATTTGAGGTTTCAAAATCCTGCATATCTAATTCCCCAATTAGACGATCTGGAAATTATCAACCTTCTATACGGGACTATAATCATATTCAATCACTAAAGAATCATTATTCTGTTATTAGCAACTTATTCAACAAAACTTTGTATTACATATTTTACATCTTTTAATTTATTTTTTACCCTAATCTATTTATGTAGGACGAGAAATTCATTAGAAGCCGCAATGAGCTGAAGATGGAAGTCAAGATTATGCTTAGTGATCGTAACATGAAGCAATTGGAGCAGTTGGAGATTATTGATAATCTGCAAAGGCTTGGATTATCTTATCACTTTGAAGATGAAATTTCCAGTATTCTGAATAATTTAAGTGACAAAGATAGCAAAAGAGATCACTTGTATGCTAAAGCTCTCGAATTTAGGCTCTTGAGATAACATGGATTTAACATTGTTTCACAAG</genome_strand>
        <mrna_strand>ACAATGTCTATTAGCAAATCAAATTTAATTTCGAAATTAGAGGTTCCAAAATCCTGCATTTCTAACGTGCCAATTCGACGATCTGGAAACTATCAACCTTCTATTTGGGACTATAATCATATTCAATCACTGAAGAATCATTATTCA....................................................................................GACGAGAAATTCATGAGACGCCGCAATGAGCTGAAGATGGAAGTGAAGATTATGCTCAGTGATCGTAACATGAAGCAATTGGAACAGTTGGAGATTATTGATAATTTGCAAAGGCTTGGATTGTCTTATCACTTTGAAGATGAAATATACAGTATTTTGAATAACTTAAGTGACAAAGGTAGCAAAAGAGATCACTTGTATGCTAAAGCTCTTGAATTCAGGCTCTTGAGACAACATGGATTTAACATTGTTTCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375077" ref_strand="+" ref_description="SGN-E375077 [TUS-36-E21]">
      <seq>accacttcccatgaatttcaaaaagaattatgtgcatttatatgtaaatgtttatgtgcctacgtgtgaactaaatcttttaaatcatttttcaaaacataactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgataaataatatcgtggcatcatacctataaagaaacaaacatttttttaaaataaaaattcctattcaaaacttatcaattttcaaactttattttcgcacatattaattgcttaatatttgccaattttgtttataacatagtgtcgtatgtcaaaataaataaaatgagcttaattgtttatttattgccatcacctagctttacatatctaaataaataagaataatagtcttaattgtttcgtatttgttatcacttagtaagattaaataaattaataaacgaccttgattgctacttgtaccctcacatagattgcatgagatatggtcgggacccacacttgtgggcctcgagggatgtctaacaccttcccctcgaggtaatttgaacccttaccctaattctctggctcgttgaccttagttagacatagttaggttagataggtgccttaacgcgccttaatttgttaggtggcgactccaaaactcaaaaatcccagaaaagttgttaggttgtgcacaaaacccgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="15071" stop="13821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14771" g_stop="14074" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E375077" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14771" e_stop="14074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTTCCCATGAACTTCAAAAAGAATTATGTGCATTTATATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAAT-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTT-TAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAA-TCTCTGGCCCTTTGACTTTAGTTAGACTTAGTTAGGTTAGATAGGTGCCCTAACGCGCCTTAATTCGTTAGGTGGCGACTCCAAAAAACTCGAAATCCCAAAAGAGTTGTTAGGTCGCGCACAAAACCCGTTT</genome_strand>
        <mrna_strand>ACCACTTCCCATGAATTTCAAAAAGAATTATGTGCATTTATATGTAAATGTTTATGTGCCTACGTGTGAACTAAATCTTTTAAATCATTT-TTCAAAACATAACTATTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATAAATAATATCGTGGCATCATACCTATAAAGAAACAAACATTTTT---TTAAAATAAAAATTCCTATTCA-AAACTTATCAATTTTCAAACTTTATTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTGTTTATAACATAGTGTCGTATGTC-AAAATAAATAAAATGAGCTTAATTGTTTATTTATTGCCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCTCACATAGATTGCATGAGATATGGTCGGGACCCACACTTGTGGGCCTCGAGGGATGTCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATTCTCTGGCTCGTTGACCTTAGTTAGACATAGTTAGGTTAGATAGGTGCCTTAACGCGCCTTAATTTGTTAGGTGGCGACTCCAAAACTC-AAAAATCCCAGAAAAGTTGTTAGGTTGTGCACAAAACCCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231645" ref_strand="+" ref_description="SGN-E231645 [cLED-4-M9]">
      <seq>accacttcccatgaatttcaaaaagaattatgtgcatttatatgtaaatgtttatgtgcctacgtgtgaactaaatcttttaaatcatttttcaaaacataactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgataaataatatcgtggcatcatacctataaagaaacaaacatttttttaaaataaaaattcctattcaaaacttatcaattttcaaactttattttcgcacatattaattgcttaatatttgccaattttgtttataacatagtgtcgtatgtcaaaataaataaaatgagcttaattgtttatttattgccatcacctagctttacatatctaaataaataagaataatagtcttaattgtttcgtatttgttatcacttagtaagattaaataaattaataaacgaccttgattgctacttgtaccctcacatagattgcatgagatatggtcgggacccacacttgtgggcctcgagggatgtctaacaccttcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="15071" stop="13933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14771" g_stop="14233" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E231645" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14771" e_stop="14233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTTCCCATGAACTTCAAAAAGAATTATGTGCATTTATATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAAT-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTT-TAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCT</genome_strand>
        <mrna_strand>ACCACTTCCCATGAATTTCAAAAAGAATTATGTGCATTTATATGTAAATGTTTATGTGCCTACGTGTGAACTAAATCTTTTAAATCATTT-TTCAAAACATAACTATTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATAAATAATATCGTGGCATCATACCTATAAAGAAACAAACATTTTT---TTAAAATAAAAATTCCTATTCA-AAACTTATCAATTTTCAAACTTTATTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTGTTTATAACATAGTGTCGTATGTC-AAAATAAATAAAATGAGCTTAATTGTTTATTTATTGCCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCTCACATAGATTGCATGAGATATGGTCGGGACCCACACTTGTGGGCCTCGAGGGATGTCTAACACCTTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236361" ref_strand="+" ref_description="SGN-E236361 [cLED-13-O11]">
      <seq>accacttcccatgaatttcaaaaagaattatgtgcatttatatgtaaatgtttatgtgcctacgtgtgaactaaatcttttaaatcatttttcaaaacataactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgataaataatatcgtggcatcatacctataaagaaacaaacatttttttaaaataaaaattcctattcaaaacttatcaattttcaaactttattttcgcacatattaattgcttaatatttgccaattttgtttataacatagtgtcgtatgtcaaaataaataaaatgagcttaattgtttatttattgccatcacctagctttacatatctaaataaataagaataatagtcttaattgtttcgtatttggtatcacttagtaagattaaataaattaataaacgaccttgattgctacttgtaccctcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="15071" stop="13999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14771" g_stop="14299" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E236361" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14771" e_stop="14299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTTCCCATGAACTTCAAAAAGAATTATGTGCATTTATATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAAT-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTT-TAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCCCACAT</genome_strand>
        <mrna_strand>ACCACTTCCCATGAATTTCAAAAAGAATTATGTGCATTTATATGTAAATGTTTATGTGCCTACGTGTGAACTAAATCTTTTAAATCATTT-TTCAAAACATAACTATTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATAAATAATATCGTGGCATCATACCTATAAAGAAACAAACATTTTT---TTAAAATAAAAATTCCTATTCA-AAACTTATCAATTTTCAAACTTTATTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTGTTTATAACATAGTGTCGTATGTC-AAAATAAATAAAATGAGCTTAATTGTTTATTTATTGCCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGGTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231013" ref_strand="+" ref_description="SGN-E231013 [cLED-5-I16]">
      <seq>tatgtaaatgtttatgtgcctacgtgtgaactaaatcttttaaatcatttttcaaaacataactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgataaataatatcgtggcatcatacctataaagaaacaaacatttttttaaaataaaaattcctattcaaaacttatcaattttcaaactttattttcgcacatattaattgcttaatatttgccaattttgtttataacatagtgtcgtatgtcaaaataaataaaatgagcttaattgtttatttattgccatcacctagctttacatatctaaataaataagaataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="15031" stop="14083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14731" g_stop="14383" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E231013" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14731" e_stop="14383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAAT-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTT-TAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATA</genome_strand>
        <mrna_strand>TATGTAAATGTTTATGTGCCTACGTGTGAACTAAATCTTTTAAATCATTT-TTCAAAACATAACTATTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATAAATAATATCGTGGCATCATACCTATAAAGAAACAAACATTTTT---TTAAAATAAAAATTCCTATTCA-AAACTTATCAATTTTCAAACTTTATTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTGTTTATAACATAGTGTCGTATGTC-AAAATAAATAAAATGAGCTTAATTGTTTATTTATTGCCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577845" ref_strand="+" ref_description="SGN-E577845 [LE08AD04]">
      <seq>actcctttatttgaattaaaacttgatagaaaaacatcttccaaggctacccagatactcgacaaggtctggatggagtcgaggtccagttgctgacgctgatctttgcctccttgcttccactagggccccctttctcctcctcgttgatcacgacgttgcaaactttcccttcttctttggttagcgataaccccttcaagtcgtctgagatctcatcaatattgtctcccatgaaacctgctaatcgaaatgattgatacaatggcggtatgggtttcttcaatggatagtagtacccatctctaggtggtcgccaatcgagccattcttcggtggtgtatttataacccaaaccaaaagtggtggaatgtcgaacaggctgtataggttcgactatcccttgtaatttagcccccaaacctttcccaagctcgaaaccgaaccaggccatcatatctatgattttttggctgaaccaaggttgcaactcaatattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="22632" stop="21533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22332" g_stop="21831" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E577845" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22332" e_stop="21831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTTATTTGAATTAAAATTTGATAGAAAAACATCTTCCAAAGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCTTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</genome_strand>
        <mrna_strand>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATACTCGACAAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTAATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276019" ref_strand="+" ref_description="SGN-E276019 [cLEN-12-G17]">
      <seq>aaaacaaaattgagaaaaatctccatctctctctagacctttctctagagagagaatctatatctatctatatatatatatatatatatatcagtgagtgagaggatttaagaagatttcttcttctttatttctgaaaaatctgtaattaattaataatggaaggaaaaaaatttgcagttctattatgtgcagaggattcagaatacgtgaagaagaaatacgggggttatttcggggttttcgtgagaatgctggcggaggaaggggaaacgtgggactttttccgggtggctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggttgggacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27560" stop="30693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27860" g_stop="28326" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="618" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E276019" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27860" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAATTGAGAAAAATCTCCATCTCTCTCTAGACCTTTCTCTAGAGAGAGAATCTATATCTATCTATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTC-AAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG</genome_strand>
        <mrna_strand>AAAACAAAATTGAGAAAAATCTCCATCTCTCTCTAGACCTTTCTCTAGAGAGAGAATCTATATCTATCTATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232741" ref_strand="+" ref_description="SGN-E232741 [cLED-8-A6]">
      <seq>aaagcaaaattgagaaaaatctccatctctctctagacctttctctagagagagaatctatatctatctatatatatatatatatatatatcagtgagtgagaggatttaagaagatttcttcttctttatttctgaaaaatctgtaattaattaataatggaaggaaaaaaatttgcagctctattatgtgcagaggattcagaatacgtgaagaagaaatacgggggttatttccgggttttcgtgagaatgctggcggacgaaggggaaacgtgggactatttccgggtggctcatggcgagtcaccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27561" stop="28534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27860" g_stop="28234" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E232741" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27860" e_stop="28234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAATTGAGAAAAATCTCCATCTCTCTCTAGACCTTTCTCTAGAGAGAGAATCTATATCTATCTATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATG</genome_strand>
        <mrna_strand>AAAGCAAAATTGAGAAAAATCTCCATCTCTCTCTAGACCTTTCTCTAGAGAGAGAATCTATATCTATCTATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGCTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCCGGGTTTTCGTGAGAATGCTGGCGGACGAAGGGGAAACGTGGGACTATTTCCGGGTGGCTCATGGCGAGTCACCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247799" ref_strand="+" ref_description="SGN-E247799 [cLEF-42-L8]">
      <seq>aaaatctccatctctctctagacctttctctagagagagaatctatatctatctatatatatatatatatatatatcagtgagtgagaggatttaagaagatttcttcttctttatttctgaaaaatctgtaattaattaataatggaaggaaaaaaatttgcagttctattatgtgcagaggattcagaatacgtgaagaagaaatacgggggttatttcggggttttcgtgagaatgctggcggaggaaggggaaacgtgggactttttccgggtggctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggttgggacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27575" stop="30695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27875" g_stop="28326" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="602" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E247799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27875" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCCATCTCTCTCTAGACCTTTCTCTAGAGAGAGAATCTATATCTATCTATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG</genome_strand>
        <mrna_strand>AAAATCTCCATCTCTCTCTAGACCTTTCTCTAGAGAGAGAATCTATATCTATCTATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692526" ref_strand="+" ref_description="SGN-E692526 [LH_Ea08P04]">
      <seq>ccgtatttatatatacagatatcagtgagtgagaagatttaagcaagatttcttcttctttatatctgaaaaatctgtaattaattaataatggaaggaaaaaaatttgcagttctattatgtgcagaggattcagaatacgtgaagaagaaatacggtggttatttcggggttttcgtgagaatgctggcggaggaaggggaaacctgggactttttccgggtggctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgttatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggatgggacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgagatccgtgaacttccaccaaaagcagaggtaatggcatggtccaacaaaactggaattgaaatgtttagatttggtgatcatataatgggcattcaaggtcaccctgaatacaccaaagacattcttctccatctcatcgatcgtcttcttcaacacaaccttattgaggagagcatggctgatgtggccaaggcaaaggttgaagagtgtgaaccagacagggagcaatggaagaaattatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27632" stop="31276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27929" g_stop="28326" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="549" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30475" g_stop="30642" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="717" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30643" i_stop="30900" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30901" g_stop="30976" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="793" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E692526" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27929" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
          <exon e_start="30475" e_stop="30642"/>
          <exon e_start="30901" e_stop="30976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAG-AAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAGGTTTGTATCAAATTCCTCTCTAGTTGAATACTAGTTTAGTACAAAAATTTTCTAAAAATGTGTAGGTTGTTTTGGAATTAGATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAGGTAAATCTAAGGGCAGAAGTTACAGTTCTGTTTGCAAAATGATTTTCATCTACAACACAATAAGTTGTCTTTTAGACTATTCAAAATCCATGTCATTATATCATATACTTTGTCTAGCTGACCTACTAGTAGGTGTGCCAAATGACATCTTCAACAGTGAGTGTGCCACATGTTTAGAATGTGTGCTATGATTGATTGATATTATTAAAAATTTCATGTGAAATATGTCAGTTATAAAGCTTGACTTTTTTGTTGTAGGAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCA</genome_strand>
        <mrna_strand>CCGTATTTATATATACAGATATCAGTGAGTGAGAAGATTTAAGCAAGATTTCTTCTTCTTTATATCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGTGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACCTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTTATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGATGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG.................................................................................ATCCGTGAACTTCCACCAAAAGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATTTGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAG..................................................................................................................................................................................................................................................................GAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551579" ref_strand="+" ref_description="SGN-E551579 [cTSB-1-C8]">
      <seq>tatatatatatatatatcagtgagtgagaggatttaagaagatttcttcttctttatttctgaaaaatctgtaattaattaataatggaaggaaaaaaatttgcagttctattatgtgcagaggattcagaatacgtgaagaagaaatacgggggttatttcggggttttcgtgagaatgctggcggaggaaggggaaacgtgggactttttccgggtggctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggttgggacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgagatccgtgaacttccaccaaaggcagaggtaatggcatggtccaacaaaactggaattgaaatgtttagatatggtgatcatataatgggcattcaaggtcaccctgaatacaccaaagacattcttctccatctcatcgatcgtcttcttcaacacaaccttattgaggagagcatggctgatgtggccaaggcaaaggttgaagagtgtgaaccagacagggagcaatggaagaaattatgcattagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27634" stop="31285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27934" g_stop="28326" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="543" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30475" g_stop="30642" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="711" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30643" i_stop="30900" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30901" g_stop="30985" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="796" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E551579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27934" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
          <exon e_start="30475" e_stop="30642"/>
          <exon e_start="30901" e_stop="30985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAGGTTTGTATCAAATTCCTCTCTAGTTGAATACTAGTTTAGTACAAAAATTTTCTAAAAATGTGTAGGTTGTTTTGGAATTAGATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAGGTAAATCTAAGGGCAGAAGTTACAGTTCTGTTTGCAAAATGATTTTCATCTACAACACAATAAGTTGTCTTTTAGACTATTCAAAATCCATGTCATTATATCATATACTTTGTCTAGCTGACCTACTAGTAGGTGTGCCAAATGACATCTTCAACAGTGAGTGTGCCACATGTTTAGAATGTGTGCTATGATTGATTGATATTATTAAAAATTTCATGTGAAATATGTCAGTTATAAAGCTTGACTTTTTTGTTGTAGGAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTC</genome_strand>
        <mrna_strand>TATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG.................................................................................ATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAG..................................................................................................................................................................................................................................................................GAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239901" ref_strand="+" ref_description="SGN-E239901 [cLED-29-C17]">
      <seq>tatcattgagtgagaggatttaagaagatttcttcttctttatttctgaaaaatctgtaattaattaataatggaaggaaaaaaatttgcagttctattatgtgcagaggattcagaatacgtgaagaagaaatacgggggttatttcggggttttcgtgagaatgctggcggaggaaggggaaacgtgggactttttccgggtggctcatggcgagtttccgaccgatgatgagatcggagaattccatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgcggatctgcaagttactcaatctgctcaaaaaaattgattccatgaagaagaaagttttgggtatttgctttggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27648" stop="28623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27948" g_stop="28323" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E239901" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27948" e_stop="28323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACAC</genome_strand>
        <mrna_strand>TATCATTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACCGATGATGAGATCGGAGAATTCCATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGCGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCCATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371162" ref_strand="+" ref_description="SGN-E371162 [TUS-28-P1]">
      <seq>aggatttaagaagatttcttcttctttatttctgaaaaatctgtaattaattaataatggaaggaaaaaaatttgcagttctattatgtgcagaggattcagaatacgtgaagaagaaatacgggggttatttcggggttttcgtgagaatgctggcggaggaaggggaaacgtgggactttttccgggtggctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggttgggacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgagatccgtgaacttccaccaaaggcagaggtaatggcatggtccaacaaaactgaaattgaaatgtttagatatggtgatcatataatgggcattcaaggtcacccttgatacacccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27662" stop="30891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27962" g_stop="28326" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="515" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30475" g_stop="30592" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="633" r_length="118" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E371162" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27962" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
          <exon e_start="30475" e_stop="30592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAGGTTTGTATCAAATTCCTCTCTAGTTGAATACTAGTTTAGTACAAAAATTTTCTAAAAATGTGTAGGTTGTTTTGGAATTAGATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAG</genome_strand>
        <mrna_strand>AGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG.................................................................................ATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGAAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTTGATACACCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271908" ref_strand="+" ref_description="SGN-E271908 [cLEM-8-L22]">
      <seq>gatttaagaagatttcttcttctttatttctgaaaaatctgtaattaattaataatggaaggaaaaaaatttgcagttctattatgtgcagaggattcagaatacgtgaagaagaaatacgggggttatttcggggttttcgtgagaatgctggcggaggaaggggaaacgtgggactttttccgggtggctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggttgggacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgagatccgtgaacttccaccaaaggcagaggtaatggcatggtccaacaaaactgaaattgaaatgtttagatatggtgatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27664" stop="30856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27964" g_stop="28326" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="513" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30475" g_stop="30556" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="595" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E271908" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27964" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
          <exon e_start="30475" e_stop="30556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAGGTTTGTATCAAATTCCTCTCTAGTTGAATACTAGTTTAGTACAAAAATTTTCTAAAAATGTGTAGGTTGTTTTGGAATTAGATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATA</genome_strand>
        <mrna_strand>GATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG.................................................................................ATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGAAATTGAAATGTTTAGATATGGTGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233493" ref_strand="+" ref_description="SGN-E233493 [cLED-9-G17]">
      <seq>ttcttctttatttctgaaaaatctgtaattaattaataatggaaggaaaaaaatttgcagttctattatgtgcagaggattcagaatacgtgaagaagaaatacgggggttatttcggggttttcgtgagaatgctggcggaggaaggggaaacgtgggactttttccgggtggctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccaggtatttcttttaatttactattttactcatcagcaattctatttctaatcgtaagttctttttatttattttactagattcattacatgatatgtctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27680" stop="28727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27980" g_stop="28427" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E233493" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27980" e_stop="28427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAA</genome_strand>
        <mrna_strand>TTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTCTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696366" ref_strand="+" ref_description="SGN-E696366 [LH_Ea08P04](-)">
      <seq>tgaagaagaaatacggtggttatttcggggttttcgtgagaatgctggcggaggaaggggaaacctgggactttttccgggtggctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgttatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggatgggacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgagatccgtgaacttccaccaaaagcagaggtaatggcatggtccaacaaaactggaattgaaatgtttagatttggtgatcatataatgggcattcaaggtcaccctgaatacaccaaagacattcttctccatctcatcgatcgttttcttcaacacaaccttattgaggagagcatggctgatgtggccaaggcaaaggttgaagagtgtgaaccagacagggagcaatggaagaaattatgcattagctttctcaagggtaaattgtgattggaatttattggaattggtcaaaaagtgtaaataggagatgatggtgttagatgaatttttagactgtttttggacttttgaacttattagacatccattacatgtcattatcaacaatgttatattaaacttttaactatgaaatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27770" stop="31454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28070" g_stop="28326" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="407" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30475" g_stop="30642" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="575" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30643" i_stop="30900" i_length="258">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30901" g_stop="31156" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="837" r_length="262" r_score="0.859"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E696366" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28070" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
          <exon e_start="30475" e_stop="30642"/>
          <exon e_start="30901" e_stop="31156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAGGTTTGTATCAAATTCCTCTCTAGTTGAATACTAGTTTAGTACAAAAATTTTCTAAAAATGTGTAGGTTGTTTTGGAATTAGATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAGGTAAATCTAAGGGCAGAAGTTACAGTTCTGTTTGCAAAATGATTTTCATCTACAACACAATAAGTTGTCTTTTAGACTATTCAAAATCCATGTCATTATATCATATACTTTGTCTAGCTGACCTACTAGTAGGTGTGCCAAATGACATCTTCAACAGTGAGTGTGCCACATGTTTAGAATGTGTGCTATGATTGATTGATATTATTAAAAATTTCATGTGAAATATGTCAGTTATAAAGCTTGACTTTTTTGTTGTAGGAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTCTCAAGGGTAAA-T-TG--T-G-----ATTGCAATTGGTCAAAAAGTGTAAATAGGAGATGATATGGTGTTAGATGAACTTTTAGACTGTTTTGGGACTTTTGAACTTATTAGACATCCATTACATGTCCTTATCAACAATCTTATATTAAACTTTTTAACTATTGAAATTGATAACTAAGT</genome_strand>
        <mrna_strand>TGAAGAAGAAATACGGTGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACCTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTTATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGATGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG.................................................................................ATCCGTGAACTTCCACCAAAAGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATTTGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTTTTCTTCAACACAACCTTATTGAG..................................................................................................................................................................................................................................................................GAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTCTCAAGGGTAAATTGTGATTGGAATTTATTGGAATTGGTCAAAAAGTGTAAATAGGAGATG--ATGGTGTTAGATGAATTTTTAGACTGTTTTTGGACTTTTGAACTTATTAGACATCCATTACATGTCATTATCAACAATGTTATATTAAAC-TTTTAACTA-TGAAATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357016" ref_strand="+" ref_description="SGN-E357016 [cTOS-22-M17]">
      <seq>gactttttccgggtggctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggttgggacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgagatccgtgaacttccaccaaaggcagaggtaatggcatggtccaacaaaactggaattgaaatgtttagatatggtgatcatataatgggcattcaaggtcaccctgaatacaccaaagacattcttctccatctcatcgatcgtcttcttcaacacaaccttattgaggagagcatggctgatgtggccaaggcaaaggttgaagagtgtgaaccagacagggagcaatggaagaaattatgcattagctttctcaagggtaaattgtgattgcaattggtcaaaaagtgtaaataggagatgatatggtgttagatgaacttttagactgttttgggacttttgaacttattagacatccattacatgtccttatncacaatcttatatttaacttttaactattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27838" stop="31442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28138" g_stop="28326" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="339" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30475" g_stop="30642" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="507" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30643" i_stop="30900" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30901" g_stop="31142" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="748" r_length="241" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E357016" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28138" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
          <exon e_start="30475" e_stop="30642"/>
          <exon e_start="30901" e_stop="31142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAGGTTTGTATCAAATTCCTCTCTAGTTGAATACTAGTTTAGTACAAAAATTTTCTAAAAATGTGTAGGTTGTTTTGGAATTAGATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAGGTAAATCTAAGGGCAGAAGTTACAGTTCTGTTTGCAAAATGATTTTCATCTACAACACAATAAGTTGTCTTTTAGACTATTCAAAATCCATGTCATTATATCATATACTTTGTCTAGCTGACCTACTAGTAGGTGTGCCAAATGACATCTTCAACAGTGAGTGTGCCACATGTTTAGAATGTGTGCTATGATTGATTGATATTATTAAAAATTTCATGTGAAATATGTCAGTTATAAAGCTTGACTTTTTTGTTGTAGGAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTCTCAAGGGTAAATTGTGATTGCAATTGGTCAAAAAGTGTAAATAGGAGATGATATGGTGTTAGATGAACTTTTAGACTGTTTTGGGACTTTTGAACTTATTAGACATCCATTACATGTCCTTATCAACAATCTTATATTAAACTTTTTAACTATTGAA</genome_strand>
        <mrna_strand>GACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG.................................................................................ATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAG..................................................................................................................................................................................................................................................................GAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTCTCAAGGGTAAATTGTGATTGCAATTGGTCAAAAAGTGTAAATAGGAGATGATATGGTGTTAGATGAACTTTTAGACTGTTTTGGGACTTTTGAACTTATTAGACATCCATTACATGTCCTTATNCACAATCTTATATTTAAC-TTTTAACTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240341" ref_strand="+" ref_description="SGN-E240341 [cLED-25-C20]">
      <seq>ctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggttgggacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgagatccgtgaacttccaccaaaggcagaggtaatggcatggtccaacaaaactggaattgaaatgtttagatatggtgatcatataatgggcattcaaggtcaccctgaatacaccaaagacattcttctgcatctcatcgatcgtcttcttcaacacaaccttattgaggagagcatggctgatgtggccaaggcaaaggttgaagagtgtgaaccagacagggagcaatggaagaaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27854" stop="31274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28154" g_stop="28326" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="323" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30475" g_stop="30642" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="491" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30643" i_stop="30900" i_length="258">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30901" g_stop="30974" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="565" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E240341" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28154" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
          <exon e_start="30475" e_stop="30642"/>
          <exon e_start="30901" e_stop="30974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAGGTTTGTATCAAATTCCTCTCTAGTTGAATACTAGTTTAGTACAAAAATTTTCTAAAAATGTGTAGGTTGTTTTGGAATTAGATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAGGTAAATCTAAGGGCAGAAGTTACAGTTCTGTTTGCAAAATGATTTTCATCTACAACACAATAAGTTGTCTTTTAGACTATTCAAAATCCATGTCATTATATCATATACTTTGTCTAGCTGACCTACTAGTAGGTGTGCCAAATGACATCTTCAACAGTGAGTGTGCCACATGTTTAGAATGTGTGCTATGATTGATTGATATTATTAAAAATTTCATGTGAAATATGTCAGTTATAAAGCTTGACTTTTTTGTTGTAGGAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATG</genome_strand>
        <mrna_strand>CTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG.................................................................................ATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTGCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAG..................................................................................................................................................................................................................................................................GAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241615" ref_strand="+" ref_description="SGN-E241615 [cLED-36-B11]">
      <seq>ctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggttgggacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgagatccgtgaacttccaccaaaggcagaggtaatggcatggtccaacaaaactggaattgaaatgtttagatatggtgatcatataatgggcattcaaggtcaccctgaatacaccaaagacattcttctccatctcatcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27854" stop="30916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28154" g_stop="28326" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="323" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30475" g_stop="30616" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="465" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E241615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28154" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
          <exon e_start="30475" e_stop="30616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAGGTTTGTATCAAATTCCTCTCTAGTTGAATACTAGTTTAGTACAAAAATTTTCTAAAAATGTGTAGGTTGTTTTGGAATTAGATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATC</genome_strand>
        <mrna_strand>CTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG.................................................................................ATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241720" ref_strand="+" ref_description="SGN-E241720 [cLED-36-N1]">
      <seq>ctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggttgggacattggtgtgactactgttaatttatcaacgtcaaagcaattgaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgagatccgtgaacttccaccaaaggcagaggtaatggcatggtccaacaaaactggaattgaaatgtttagatatggtgatcatataatgggcattcaaggtcaccctgaatacaccaaagacattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27854" stop="30901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28154" g_stop="28326" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="323" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30475" g_stop="30601" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="450" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E241720" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28154" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
          <exon e_start="30475" e_stop="30601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAGGTTTGTATCAAATTCCTCTCTAGTTGAATACTAGTTTAGTACAAAAATTTTCTAAAAATGTGTAGGTTGTTTTGGAATTAGATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTC</genome_strand>
        <mrna_strand>CTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTGAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG.................................................................................ATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577807" ref_strand="+" ref_description="SGN-E577807 [LE15DG07]">
      <seq>tcttacgtacattaatggaaatttcaatttaggtaattgttattttgtaaaactcttttctgtgctatgcgactgtttactagttgggacattactattttatatgaaaatctgctaacatatttggacaaatattattctaatagttgcaatttccgtgttacgaagttatgtcttaattcatctctcccatatgttggaaaaaataaaattttcctttgtttttttttctggcataatacataaatatcattcataacttgttttatctataaaatcgaataaatagataaatttatcctgtgttttacatgtatattataccgtgtaggatatatatgtgtacttattctattttgcacaagtttaagtatttaaatgtcaactaaagtcaagttaaaaaaaatgtatatttgtgtattacttccaatccattttacttgttattatccttaaaaaataaaattaaaatttgggaggattacatgagaggaccctagtggtccaaaagcaaaaagaggtgtgagtgagatttgggaccatatgccaaaaactgagtgagaagttggaactattctgggttagagttagtgaattttggattttggtcccctcacactttcaaattaataattatagacagcccatatattttgggattctatttggatggattcttgtcacgtgttcctctttaatttttcaccagtagtagtagtagccttttgtcatatacttacttcacctaactatgtactatatgantaatgcccgtccattcaaaaaataaaataaaaatcactcgttaaaactaaaactaattaagcatcttctagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="28569" stop="30008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28869" g_stop="29708" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E577807" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28869" e_stop="29708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGC</genome_strand>
        <mrna_strand>TCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGANTAATGCCCGTCCATTC-AAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232187" ref_strand="+" ref_description="SGN-E232187 [cLEL-5-M5](-)">
      <seq>ttccagttttgttggaccatgccattacctctgcctttggtggaagttcacggatctaattccaaaacaacctacacatttttagaaaatttttgtactaaactagtattcaactagagaggaatttgatacaaacctcatcgcgatgacactcgataatttgcaaaaatgcaggtaatttgagagagttgaattgctttgacgttgataaattaacagtagtcacaccaatgtcccaaccataagtagctctctctatagtgccacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="30829" stop="29959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30529" g_stop="30259" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E232187" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30529" e_stop="30259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGTTTTGTTGGACCATGCCATTACCTCTGCCTTTGGTGGAAGTTCACGGATCTAATTCCAAAACAACCTACACATTTTTAGAAAATTTTTGTACTAAACTAGTATTCAACTAGAGAGGAATTTGATACAAACCTCATCGCGATGACACTCGATAATTTGCAAAAATGCAGGTAATTTGAGAGAGTTGAATTGCTTTGACGTTGATAAATTAACAGTAGTCACACCAATGTCCCAACCATTAGTAGCTCTCTCTATAGTGCCACCCAA</genome_strand>
        <mrna_strand>TTCCAGTTTTGTTGGACCATGCCATTACCTCTGCCTTTGGTGGAAGTTCACGGATCTAATTCCAAAACAACCTACACATTTTTAGAAAATTTTTGTACTAAACTAGTATTCAACTAGAGAGGAATTTGATACAAACCTCATCGCGATGACACTCGATAATTTGCAAAAATGCAGGTAATTTGAGAGAGTTGAATTGCTTTGACGTTGATAAATTAACAGTAGTCACACCAATGTCCCAACCATAAGTAGCTCTCTCTATAGTGCCACCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221006" ref_strand="+" ref_description="SGN-E221006 [cLEL-22-J8](-)">
      <seq>tctcattgctctcttgctactttaaacaatatattaatatttcggcaaatattcaagtgcttttctccgctattttcctgctttgttcgagtacaaggtgaatcattttgttttgtttaacaggtttcatatttgaagttccagttgaagattaactgaaaaaggatttgtttatttgtttgaatgtatatatgtctatatattttattttttccgctattttatttattcgaatgttgtaacaattgtaaccctaagatcatataataaagttatttgggggtcgtctaggggagggggatttatatgcttacttgctcattatttttttttttagaaatcatgcctataggtttgtctttaaccacctagatttgatatttgtaggtgttataatctaatcaattttcaatttgcttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="47535" stop="105920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47835" g_stop="48252" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48253" i_stop="49137" i_length="885">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49138" g_stop="49153" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="438" r_length="16" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E221006" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47835" e_stop="48252"/>
          <exon e_start="49138" e_stop="49153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATTGCTCTCTTGCTACTTT-AACAATATATTAATATTTCGGCAAATATTCAAGTGCTTTTCTCCGCTATTTTCCTGCTTTGTTCGAGTACAAGGTGAATCATTTTGTTTTGTTTAACAGGTTTCATATTTGAAGTTCAAGTTGAAGATTAACTGAAGAAGGATTTGTTTATTTGTTTGAATGTATATATGTCTATATATTTTATTTTTTCCGCTATTTTATTTATTCGAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCTTACTTGCTCATTA---TTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGACGTTTTTGTTAACAAGCCTTAAAAAAATAAGAACTAGAGTCCATTAATTTTTAAATGTTAAAATCATATCCTAATAAATCTAGTAGGTTGTTAGATGTTAAAAATATATTTTAAATTCTCATTTGTCTTATCACGTAGAAACTATGCCTAAGTATTAAATTGTTCATATCATTTACAAAATCATGCATATATGTGTTACTCCTTTTAAACACCTAGAAATTCATGTCTATAGGCTTGAAATAACTTTTAACATATCCGTAAAAATAAAATTTATTTGTGTCCTTCCCCATAAAATGGTCAATATTAATTCTATTTGTCTTCCTCATTCATGATGCAATATGTTTTTTTTTAATAATACTAATTTAGAATCATTTTATGCATTTAACTTGGCTTTAAAAATATTTCATATCAAAACCTTGTAACATAATTTTCTTAAAAAGTCATTATTTAAACTTTGAATTGATTTTGACATTGTTTATTTTGAAAATAAATTATAAGTACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTATGAGGTCTAGTTCCAATTTTTTAAACCTGACGCATCCTCGGAAGTACCACCTACCCATGAATTTCAAAAAGAATTATGTGCATTTATGTGTAATGTTTATGTGCATGTGTGTGAACTAAATCTTTTAAATCATTTTTCAAAAACATAAACTATTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGGCATCATCCCTACAAAGAAACAAACATTTTTAAATAAAAATTCCTACTCAAAGCTTATCAATTTTCAAACTTTATTTTTGCACATATTAATTGCTTAATATTTGCCAATTTTGTATGTTAAATAAATAAATAAAAAATAATAAA</genome_strand>
        <mrna_strand>TCTCATTGCTCTCTTGCTACTTTAAACAATATATTAATATTTCGGCAAATATTCAAGTGCTTTTCTCCGCTATTTTCCTGCTTTGTTCGAGTACAAGGTGAATCATTTTGTTTTGTTTAACAGGTTTCATATTTGAAGTTCCAGTTGAAGATTAACTGAAAAAGGATTTGTTTATTTGTTTGAATGTATATATGTCTATATATTTTATTTTTTCCGCTATTTTATTTATTCGAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCTTACTTGCTCATTATTTTTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220877" ref_strand="+" ref_description="SGN-E220877 [cLEL-22-L24](-)">
      <seq>tttattttttccgctattttatttaatcaaaatgttgtaacaattgtaaccctaagatcatataataaagttatttgggggtcgtctaggggaaagggatttatatgcttacctgctcattatttttttttttagaaatcatgcctataggtttgtctttaaccacctagatttgatatttgtaggtgttataatctaatcaattttcaatttgcttgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="47737" stop="105920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48037" g_stop="48252" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48253" i_stop="49136" i_length="884">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49137" g_stop="49153" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="236" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E220877" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48037" e_stop="48252"/>
          <exon e_start="49137" e_stop="49153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTTTCCGCTATTTTATTTATTC-GAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCTTACTTGCTCATTA---TTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGACGTTTTTGTTAACAAGCCTTAAAAAAATAAGAACTAGAGTCCATTAATTTTTAAATGTTAAAATCATATCCTAATAAATCTAGTAGGTTGTTAGATGTTAAAAATATATTTTAAATTCTCATTTGTCTTATCACGTAGAAACTATGCCTAAGTATTAAATTGTTCATATCATTTACAAAATCATGCATATATGTGTTACTCCTTTTAAACACCTAGAAATTCATGTCTATAGGCTTGAAATAACTTTTAACATATCCGTAAAAATAAAATTTATTTGTGTCCTTCCCCATAAAATGGTCAATATTAATTCTATTTGTCTTCCTCATTCATGATGCAATATGTTTTTTTTTAATAATACTAATTTAGAATCATTTTATGCATTTAACTTGGCTTTAAAAATATTTCATATCAAAACCTTGTAACATAATTTTCTTAAAAAGTCATTATTTAAACTTTGAATTGATTTTGACATTGTTTATTTTGAAAATAAATTATAAGTACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTATGAGGTCTAGTTCCAATTTTTTAAACCTGACGCATCCTCGGAAGTACCACCTACCCATGAATTTCAAAAAGAATTATGTGCATTTATGTGTAATGTTTATGTGCATGTGTGTGAACTAAATCTTTTAAATCATTTTTCAAAAACATAAACTATTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGGCATCATCCCTACAAAGAAACAAACATTTTTAAATAAAAATTCCTACTCAAAGCTTATCAATTTTCAAACTTTATTTTTGCACATATTAATTGCTTAATATTTGCCAATTTTGTATGTTAAATAAATAAATAAAAAATAATAAA</genome_strand>
        <mrna_strand>TTTATTTTTTCCGCTATTTTATTTAATCAAAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAAAGGGATTTATATGCTTACCTGCTCATTATTTTTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTG-C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256788" ref_strand="+" ref_description="SGN-E256788 [cLEG-40-A22]">
      <seq>ttttgtctataacatagcctcgtatgttaaataaataaaaaataaacttgattgtttattattgctgtcatctagcctcgcatgtttaaattaataaaatagccttaattgttttatacttgttatcacttagcaaagcacattaatgaataataatgaagtgaccttgattgctacttgtaacccccacatagattgcatgagatacggccgggacccacacttgtggacctcgaggcatgcctaacaccttcccctcgaggtaatttgaacccttaccctaatctctggctcgttgaccttagttagacttaattaggttagataggtgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="48836" stop="49741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49136" g_stop="49441" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="335" r_length="308" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E256788" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49136" e_stop="49441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATAAA-AAATAATAAACTTGGTTGTTTATTATTGCTGTCTTCTAGCCTCGCATATTTAAATTAATAAAATAGCCTTAATTGTTTTATACTTGTTATCACTTAGC-AAGCATATTAATGAATAATAATAAAGTGACCTTGATTGCTACTTGTAA-CCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATTCTCTGGCTCGTTGACCTTAGTTAGACTTAGTTAGGTTAGATAGGTGCCCT</genome_strand>
        <mrna_strand>TAAATAAATAAAAAATAAACTTGATTGTTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGTTTTATACTTGTTATCACTTAGCAAAGCACATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGCATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAA-TCTCTGGCTCGTTGACCTTAGTTAGACTTAATTAGGTTAGATAGGTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730464" ref_strand="+" ref_description="SGN-E730464 [LA24AH04]">
      <seq>cacccctttatgtacggacgggagacgatgaacgctgcacttcaccaagatagacaccagcaaactcagatcgacgacgacgatgatgacgacgtcgtcgctgctgtcggtggcggtggcagtggtgggggaggaatagagtctatggacaaccctactcctcacattcgctacgaccaacatcatcactctcattctcacgcgcttcacaacggcggcgccggcggttctatggagatgaatggtgtggaaggtgtttctcataacgccttgtatggtcctccttccgaaattgttcctactgctggtagtggagcttccgatcagcttacgctgtcgtttcaaggcgaagtgtacgtttttgatgccgtttcacctgaaaaggttcaggcggtgctgttactgttggggggatacgaagtccctcctggtatccctgctgtaaatgtggttccccaaagtcagagggcttcaggtgactttcctggaagattaaatcaaccggaaagagctgcttctttaaatcgttttagggaaaagaggaaagaacggtgttttgataaaaagatccgctatactgtgcggaaggaagttgcgatgacgatgcagcgcaagaaaggtcagtttacatctgccaagtcaatacctgacgaagtaggttcttctgcagattggaatgaaggctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="55050" stop="59276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55340" g_stop="55724" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55725" i_stop="56668" i_length="944">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56669" g_stop="56752" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="468" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56753" i_stop="56838" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.065" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56839" g_stop="56972" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="602" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56973" i_stop="58890" i_length="1918">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58891" g_stop="58976" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="688" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E730464" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55340" e_stop="55724"/>
          <exon e_start="56669" e_stop="56752"/>
          <exon e_start="56839" e_stop="56972"/>
          <exon e_start="58891" e_stop="58976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCTAACATGTACGGACGGGAGACGATGAACGCTGCACTTCACCAAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAGGTATTTCTTTTACTTTGACCTCTCTTTTTGTGCTTACTAAAAATGTTTGCCCTCTAATTTGTGCATCTTGCTCGTTCTTGTGTAGTGTGTTCTTTTATAAGTTTAGCTGAAAAGGTGTTTCTTTTAATTAGCGAGATTGGTCTGCATTTAATTTTTTTGTGTTGCTTGGATTCTTGCTTTTTTTGTGTCTGTCTACAAGAGATTGAGTGACTTAGGGGGAAGGATTTTCAATTTTAGAGATGGGGATAATTCTGTATTTGGCCAAAAGTTCTTGCCTCACTCTCACTCGACTTTTGGAGTTGTTGAGGTATTTCAAGACTCCGAAACTGGTCGTTTCTGAGATTAGATTGTATTTGATTGGCGAATTGGTTAGTGTGTACGGTGAATTGTTTGATATTGATCAAATTATGAAGCAAAGAGGCCATGCTGATCTTTTTTATCTTCCACGAGTAAGAGTGATTCTCACTGGCACGATTTTAGTATCACTGTAATTAAAATCTATGCACCGATGCTGAGTGAGGGGTTATCGCTCATAGGTGAAGTCATGCACTTCATAGAAGTGTTAAAAATGATGCACAGAGTGATCCAAATAAGAAGTCGTTGATGCTCTGAATCTCAACTTAGAAGAGTAAGATTTATGGATACTGAAATTAGTTCGTTTTATTGCAATCTGATCGTTACAGTGCTAAATTCACATACTTAAGAATTTTTTTTGACGTTGAGAATTGTGTGTTTCACTTCAAATGTGTGTGCTGTTTACTTCTCACTTTTCGCTTCAAGCTCCATGGTCCTTATTGCTTTTTTTTGCTCTTTTAGAAAAACTGTTTAGTATATGTATCAGGTAGTGGAATTTGATTCACAATTAGTGGATTTAAAACTTCATTTTGATATTTACAATAATCTTAATAGGGGTAAATTCTGTTTTTATGTTTATTGAGTTTTAGGTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTGCTGTAAATGTGGTTCCCCAAAGTCAGAGGGTATTCATCTTTATCTTCCCCTTACATTTTTTTACCAGACTGGTGGTTTATAATCAGTTATGGCACTTCCGCGGCAATATTCACAGGCTTCAGGTGACTTTCCTGGAAGATTAAATCAACCGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAGGTAATAAAACTGTAGTTTTTAATGCATGATGTTGTTTTGTCTGCTTGTTTGAACCATATTCGGAACTAGGTGGAGATAATGTGCAAATTGATGTCTGTTGCGATAGATGTCCCATCTGTAATTGTCCATTCGCTGTGCTAATGATTGATAGGACTAATTCACCCTTCTAAATTAAGTTGACAATAAGAGTAGGAAAGACATTTGCAAATTGTTATACACGAGGGGCGTCTAGCTCTGCGGCAGATGCTTTATATCAGCTTTATGCATTGCTTGAACTATTTGACTGGAATGGTGTAGGAGGTGTTTTGAAGGCAAAAGGAGCATTTATCTTAAAGCAACATTATTTTCAACTGGCTGACCTGCTGGACTTGGCGAATGCTACGAGTCAACTCCAACTTTTTGTAATTTTCTACAGAATTACCTGAAAAAGTAAAAAAGAGTGGAGTATGTCATGACTGAAATATGGCAGGATCACCTGAGGTGCATCTTACTTTATCTTTAAAAAGCAGAGTGCCCCCGAGCTGCACACACTTATTTCATATCTAAGACATTGTTTGAATGTGAATATGTAATTTCTAAATGACCTGACTGCTAAAAAACAGTTGCCGTGAGACAAAATTCTCACTTCCTCTTTACCTTAGGTTTGTGTATAAGAAAAGGTCAACTACAGCATTTTAAGGAATGAGGTAGAACTAACTAAAGAATGCTATAGCGAGGACATTGTAGTGCACTAGGTTGACATTGGAAATATAATAGGATAATTAGTGGTGAAAACATTATCCTATAAGAGGGAAGGGAGGTGTAATAGTATTTAAAGGATGAGACATGACCTCCTACTGAGCGCCTTATATTCTATCAATGCAAATGTCCCATAGTTTTGTGGACTTCGGAGCATTGGTACAACTGGCGCTAAAGTAGTGCACTTCATTATATGAAAACTTGAAATTATTGTCCCCCAATCCTTGCTCTAGTGATAAGAACACAGTCTGTGATGTGGGGGTTAGGCGCACTCCACAAATTTAACCCTACCACAAACAAAAGTGTGGTATTTAAATGGAGAATGGTAAATGCGCAGGCCTCTTTCCACCGAGTTTCAAGCTGTTCGCCTTGGTCTTGGGGATTTCTCAATTATCAAATAGCCCATTGGCATAATATATTAAAACTGAAAAAGCACATAAATACTACTACTAAAAATGGTCTGAGTTACAAAACTGTGGATAAATGACAATAATTAAAGCAAGTACGAGAAGATGTAAGAGCACTCCCATTTCCAATTTAGTGTAGCTGAATTATTATTTTATTCATTTATTAGAAGCCTTTTTTAAAAAAAAAGAAGGGGAAAATGGCCCATTAACTTTTGATGGACAATTTGGTTATTCAACTTTAGAGTTGAGGTCTTTCCACATTTAGTATAAAATATAATAATGATTTTTGCATAATATCGAAGACCACATTATGCAATAGAGCACCAAGACTTGTTTTAGTTCCATTACTTTATTGACTACTGACTATGCCATACCCTCGGGTGCAAGAACGGATATTTTACTAGCTCCTCTCATGTGGCCATGCATCAATCTTCAACTGCGGAATATTTTAATTATAGGCAACTGCTTCCAACCCATGCAAGTGAAACGACTTTTGCTAAAGGATGTCTATAGTGACATCTGACCATGCAATTTGTGCAGGTATCCTTAGATGTTATGCTAGTTCTTTCTCTAGTCAATATGATTTAATTTTATTTTCTCTTACTTCATTCTTCTAGAGGGAGGGGTTATGGGTCCCTGTTAGGTTTTTGAAGTTATTAATTTCAGTCCTTGTCTATATTTTCATCAGTCTTGTAGTTGAAGTTCATGGTTTAGACTAGGTCCTTTTATTTGTTCTTTTCAGTTGTCTCATCTGATCTATGTTATATTTTCAGGATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTG</genome_strand>
        <mrna_strand>CACCCCT-TTATGTACGGACGGGAGACGATGAACGCTGCACTTCACCAAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTGCTGTAAATGTGGTTCCCCAAAGTCAGAGG......................................................................................GCTTCAGGTGACTTTCCTGGAAGATTAAATCAACCGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726833" ref_strand="+" ref_description="SGN-E726833 [LA12DG09]">
      <seq>ctaacatgtacggacgggagacgatgaacgctgcacttcaccaagatagacaccagcaaactcagatcgacgacgacgatgatgacgacgtcgtcgctgctgtcggtggcggtggcagtggtgggggaggaatagagtctatggacaaccctactcctcacattcgctacgaccaacatcatcactctcattctcacgcgcttcacaacggcggcgccggcggttctatggagatgaatggtgtggaaggtgtttctcataacgccttgtatggtcctccttccgaaattgttcctactgctggtagtggagcttccgatcagcttacgctgtcgtttcaaggcgaagtgtacgtttttgatgccgtttcacctgaaaaggttcaggcggtgctgttactgttggggggatacgaagtccctcctggtatccctgctgtaaatgtggttccccaaagtcagagggcttcaggtgactttcctggaagattaaatcaaccggaaagagctgcttctttaaatcgttttagggaaaagaggaaagaacggtgttttgataaaaagatccgctatactgtgcggaaggaagttgcgatgaggatgcagcgcaagaaaggtcagtttacatctgccaagtcaatacctgacgaagtaggttcttctgcagattggaatgaaggctctggtcaagaagagcaggaaacatcatgtagacattgcaatattagttcgaaatccactcctatgatgcgtcggggaccagctggcccaaggtctctttgtaatgcatgtggactcaagtgggccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="55045" stop="59762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55345" g_stop="55724" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55725" i_stop="56668" i_length="944">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56669" g_stop="56752" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="464" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56753" i_stop="56838" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.065" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56839" g_stop="56972" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="598" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56973" i_stop="58890" i_length="1918">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58891" g_stop="58998" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="706" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58999" i_stop="59359" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59360" g_stop="59462" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="809" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E726833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55345" e_stop="55724"/>
          <exon e_start="56669" e_stop="56752"/>
          <exon e_start="56839" e_stop="56972"/>
          <exon e_start="58891" e_stop="58998"/>
          <exon e_start="59360" e_stop="59462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACATGTACGGACGGGAGACGATGAACGCTGCACTTCACCAAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAGGTATTTCTTTTACTTTGACCTCTCTTTTTGTGCTTACTAAAAATGTTTGCCCTCTAATTTGTGCATCTTGCTCGTTCTTGTGTAGTGTGTTCTTTTATAAGTTTAGCTGAAAAGGTGTTTCTTTTAATTAGCGAGATTGGTCTGCATTTAATTTTTTTGTGTTGCTTGGATTCTTGCTTTTTTTGTGTCTGTCTACAAGAGATTGAGTGACTTAGGGGGAAGGATTTTCAATTTTAGAGATGGGGATAATTCTGTATTTGGCCAAAAGTTCTTGCCTCACTCTCACTCGACTTTTGGAGTTGTTGAGGTATTTCAAGACTCCGAAACTGGTCGTTTCTGAGATTAGATTGTATTTGATTGGCGAATTGGTTAGTGTGTACGGTGAATTGTTTGATATTGATCAAATTATGAAGCAAAGAGGCCATGCTGATCTTTTTTATCTTCCACGAGTAAGAGTGATTCTCACTGGCACGATTTTAGTATCACTGTAATTAAAATCTATGCACCGATGCTGAGTGAGGGGTTATCGCTCATAGGTGAAGTCATGCACTTCATAGAAGTGTTAAAAATGATGCACAGAGTGATCCAAATAAGAAGTCGTTGATGCTCTGAATCTCAACTTAGAAGAGTAAGATTTATGGATACTGAAATTAGTTCGTTTTATTGCAATCTGATCGTTACAGTGCTAAATTCACATACTTAAGAATTTTTTTTGACGTTGAGAATTGTGTGTTTCACTTCAAATGTGTGTGCTGTTTACTTCTCACTTTTCGCTTCAAGCTCCATGGTCCTTATTGCTTTTTTTTGCTCTTTTAGAAAAACTGTTTAGTATATGTATCAGGTAGTGGAATTTGATTCACAATTAGTGGATTTAAAACTTCATTTTGATATTTACAATAATCTTAATAGGGGTAAATTCTGTTTTTATGTTTATTGAGTTTTAGGTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTGCTGTAAATGTGGTTCCCCAAAGTCAGAGGGTATTCATCTTTATCTTCCCCTTACATTTTTTTACCAGACTGGTGGTTTATAATCAGTTATGGCACTTCCGCGGCAATATTCACAGGCTTCAGGTGACTTTCCTGGAAGATTAAATCAACCGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAGGTAATAAAACTGTAGTTTTTAATGCATGATGTTGTTTTGTCTGCTTGTTTGAACCATATTCGGAACTAGGTGGAGATAATGTGCAAATTGATGTCTGTTGCGATAGATGTCCCATCTGTAATTGTCCATTCGCTGTGCTAATGATTGATAGGACTAATTCACCCTTCTAAATTAAGTTGACAATAAGAGTAGGAAAGACATTTGCAAATTGTTATACACGAGGGGCGTCTAGCTCTGCGGCAGATGCTTTATATCAGCTTTATGCATTGCTTGAACTATTTGACTGGAATGGTGTAGGAGGTGTTTTGAAGGCAAAAGGAGCATTTATCTTAAAGCAACATTATTTTCAACTGGCTGACCTGCTGGACTTGGCGAATGCTACGAGTCAACTCCAACTTTTTGTAATTTTCTACAGAATTACCTGAAAAAGTAAAAAAGAGTGGAGTATGTCATGACTGAAATATGGCAGGATCACCTGAGGTGCATCTTACTTTATCTTTAAAAAGCAGAGTGCCCCCGAGCTGCACACACTTATTTCATATCTAAGACATTGTTTGAATGTGAATATGTAATTTCTAAATGACCTGACTGCTAAAAAACAGTTGCCGTGAGACAAAATTCTCACTTCCTCTTTACCTTAGGTTTGTGTATAAGAAAAGGTCAACTACAGCATTTTAAGGAATGAGGTAGAACTAACTAAAGAATGCTATAGCGAGGACATTGTAGTGCACTAGGTTGACATTGGAAATATAATAGGATAATTAGTGGTGAAAACATTATCCTATAAGAGGGAAGGGAGGTGTAATAGTATTTAAAGGATGAGACATGACCTCCTACTGAGCGCCTTATATTCTATCAATGCAAATGTCCCATAGTTTTGTGGACTTCGGAGCATTGGTACAACTGGCGCTAAAGTAGTGCACTTCATTATATGAAAACTTGAAATTATTGTCCCCCAATCCTTGCTCTAGTGATAAGAACACAGTCTGTGATGTGGGGGTTAGGCGCACTCCACAAATTTAACCCTACCACAAACAAAAGTGTGGTATTTAAATGGAGAATGGTAAATGCGCAGGCCTCTTTCCACCGAGTTTCAAGCTGTTCGCCTTGGTCTTGGGGATTTCTCAATTATCAAATAGCCCATTGGCATAATATATTAAAACTGAAAAAGCACATAAATACTACTACTAAAAATGGTCTGAGTTACAAAACTGTGGATAAATGACAATAATTAAAGCAAGTACGAGAAGATGTAAGAGCACTCCCATTTCCAATTTAGTGTAGCTGAATTATTATTTTATTCATTTATTAGAAGCCTTTTTTAAAAAAAAAGAAGGGGAAAATGGCCCATTAACTTTTGATGGACAATTTGGTTATTCAACTTTAGAGTTGAGGTCTTTCCACATTTAGTATAAAATATAATAATGATTTTTGCATAATATCGAAGACCACATTATGCAATAGAGCACCAAGACTTGTTTTAGTTCCATTACTTTATTGACTACTGACTATGCCATACCCTCGGGTGCAAGAACGGATATTTTACTAGCTCCTCTCATGTGGCCATGCATCAATCTTCAACTGCGGAATATTTTAATTATAGGCAACTGCTTCCAACCCATGCAAGTGAAACGACTTTTGCTAAAGGATGTCTATAGTGACATCTGACCATGCAATTTGTGCAGGTATCCTTAGATGTTATGCTAGTTCTTTCTCTAGTCAATATGATTTAATTTTATTTTCTCTTACTTCATTCTTCTAGAGGGAGGGGTTATGGGTCCCTGTTAGGTTTTTGAAGTTATTAATTTCAGTCCTTGTCTATATTTTCATCAGTCTTGTAGTTGAAGTTCATGGTTTAGACTAGGTCCTTTTATTTGTTCTTTTCAGTTGTCTCATCTGATCTATGTTATATTTTCAGGATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTGGTCAAGAAGAGCAGGAAACATCGTGAGTTCCATTTTCTGTAGTAGTTGATTTTCCTTTTTTCAAGTTATAATATGTTTACCACCCCCAAAAATTCCCCTTGACTAGAACAATTAAAAAATTCCCCTTAGGAGCCAACAGTGGCATTTCACACTTTTGTCCCTTAGTCACTCGAACGCCCTGACTTCACGGTTGGAGGTGTAGGACACTAGGCTATACCTCCCTTCTCTGTAGTTGTTCTGTCTTCCGTCATTGAATTTGATGTAAATCTGTGGTCATTTTACAGCAGATTCAATTTTACATGGTCTCGAGGTTCAGAGGTTACCGATCACTTTAAATACAATTGACATCTTTCTGAGAAGTTTCTCTTTCCATTTCTCAACAGATGTAGACATTGCAATATTAGTTCGAAATCCACTCCTATGATGCGTCGGGGACCAGCTGGCCCAAGGTCTCTTTGTAATGCATGTGGACTCAAGTGGGCCAAT</genome_strand>
        <mrna_strand>CTAACATGTACGGACGGGAGACGATGAACGCTGCACTTCACCAAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTGCTGTAAATGTGGTTCCCCAAAGTCAGAGG......................................................................................GCTTCAGGTGACTTTCCTGGAAGATTAAATCAACCGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTGGTCAAGAAGAGCAGGAAACATC.........................................................................................................................................................................................................................................................................................................................................................................ATGTAGACATTGCAATATTAGTTCGAAATCCACTCCTATGATGCGTCGGGGACCAGCTGGCCCAAGGTCTCTTTGTAATGCATGTGGACTCAAGTGGGCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689250" ref_strand="+" ref_description="SGN-E689250 [t3_tus_80_L20]">
      <seq>ccgttatgtacggacgggagacgatgaacgctgcacttcacttagatagacaccagcaaactcagatcgacgacgacgatgatgacgacgtcgtcgctgctgtcggtggcggtggcagtggtgggggaggaatagagtctatggacaaccctactcctcacattcgctacgaccaacatcatcactctcattctcacgcgcttcacaacggcggcgccggcggttctatggagatgaatggtgtggaaggtgtttctcataacgccttgtatggtcctccttccgaaattgttcctactgctggtagtggagcttccgatcagcttacgctgtcgtttcaaggcgaagtgtacgtttttgatgccgtttcacctgaaaaggttcaggcggtgctgttactgttggggggatacgaagtccctcctggtatccctgctgtaaatgtggttccccaaagtcagagggcttcaggtgactttcctggaagattaaatcaaccggaaagagctgcttctttaaatcgttttagggaaaagaggaaagaacggtgttttgataaaaagatccgctatactgtgcggaaggaagttgcgatgaggatgcagcgcaagaaaggtcagtttacatctgccaagtcaatacctgacgaagtaggttcttctgcagattggaatgaaggctctggtcaagaagagcaggaaacatcatgtagacattgcaatattagttcgaaatcccctcctatgatgcgtcggggaccagctggcccagggtctctttgtaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="55050" stop="59740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55345" g_stop="55724" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55725" i_stop="56668" i_length="944">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56669" g_stop="56752" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="464" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56753" i_stop="56838" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.065" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56839" g_stop="56972" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="598" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56973" i_stop="58890" i_length="1918">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58891" g_stop="58998" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="706" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58999" i_stop="59359" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59360" g_stop="59440" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="787" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E689250" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55345" e_stop="55724"/>
          <exon e_start="56669" e_stop="56752"/>
          <exon e_start="56839" e_stop="56972"/>
          <exon e_start="58891" e_stop="58998"/>
          <exon e_start="59360" e_stop="59440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACATGTACGGACGGGAGACGATGAACGCTGCACTTCACCAAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAGGTATTTCTTTTACTTTGACCTCTCTTTTTGTGCTTACTAAAAATGTTTGCCCTCTAATTTGTGCATCTTGCTCGTTCTTGTGTAGTGTGTTCTTTTATAAGTTTAGCTGAAAAGGTGTTTCTTTTAATTAGCGAGATTGGTCTGCATTTAATTTTTTTGTGTTGCTTGGATTCTTGCTTTTTTTGTGTCTGTCTACAAGAGATTGAGTGACTTAGGGGGAAGGATTTTCAATTTTAGAGATGGGGATAATTCTGTATTTGGCCAAAAGTTCTTGCCTCACTCTCACTCGACTTTTGGAGTTGTTGAGGTATTTCAAGACTCCGAAACTGGTCGTTTCTGAGATTAGATTGTATTTGATTGGCGAATTGGTTAGTGTGTACGGTGAATTGTTTGATATTGATCAAATTATGAAGCAAAGAGGCCATGCTGATCTTTTTTATCTTCCACGAGTAAGAGTGATTCTCACTGGCACGATTTTAGTATCACTGTAATTAAAATCTATGCACCGATGCTGAGTGAGGGGTTATCGCTCATAGGTGAAGTCATGCACTTCATAGAAGTGTTAAAAATGATGCACAGAGTGATCCAAATAAGAAGTCGTTGATGCTCTGAATCTCAACTTAGAAGAGTAAGATTTATGGATACTGAAATTAGTTCGTTTTATTGCAATCTGATCGTTACAGTGCTAAATTCACATACTTAAGAATTTTTTTTGACGTTGAGAATTGTGTGTTTCACTTCAAATGTGTGTGCTGTTTACTTCTCACTTTTCGCTTCAAGCTCCATGGTCCTTATTGCTTTTTTTTGCTCTTTTAGAAAAACTGTTTAGTATATGTATCAGGTAGTGGAATTTGATTCACAATTAGTGGATTTAAAACTTCATTTTGATATTTACAATAATCTTAATAGGGGTAAATTCTGTTTTTATGTTTATTGAGTTTTAGGTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTGCTGTAAATGTGGTTCCCCAAAGTCAGAGGGTATTCATCTTTATCTTCCCCTTACATTTTTTTACCAGACTGGTGGTTTATAATCAGTTATGGCACTTCCGCGGCAATATTCACAGGCTTCAGGTGACTTTCCTGGAAGATTAAATCAACCGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAGGTAATAAAACTGTAGTTTTTAATGCATGATGTTGTTTTGTCTGCTTGTTTGAACCATATTCGGAACTAGGTGGAGATAATGTGCAAATTGATGTCTGTTGCGATAGATGTCCCATCTGTAATTGTCCATTCGCTGTGCTAATGATTGATAGGACTAATTCACCCTTCTAAATTAAGTTGACAATAAGAGTAGGAAAGACATTTGCAAATTGTTATACACGAGGGGCGTCTAGCTCTGCGGCAGATGCTTTATATCAGCTTTATGCATTGCTTGAACTATTTGACTGGAATGGTGTAGGAGGTGTTTTGAAGGCAAAAGGAGCATTTATCTTAAAGCAACATTATTTTCAACTGGCTGACCTGCTGGACTTGGCGAATGCTACGAGTCAACTCCAACTTTTTGTAATTTTCTACAGAATTACCTGAAAAAGTAAAAAAGAGTGGAGTATGTCATGACTGAAATATGGCAGGATCACCTGAGGTGCATCTTACTTTATCTTTAAAAAGCAGAGTGCCCCCGAGCTGCACACACTTATTTCATATCTAAGACATTGTTTGAATGTGAATATGTAATTTCTAAATGACCTGACTGCTAAAAAACAGTTGCCGTGAGACAAAATTCTCACTTCCTCTTTACCTTAGGTTTGTGTATAAGAAAAGGTCAACTACAGCATTTTAAGGAATGAGGTAGAACTAACTAAAGAATGCTATAGCGAGGACATTGTAGTGCACTAGGTTGACATTGGAAATATAATAGGATAATTAGTGGTGAAAACATTATCCTATAAGAGGGAAGGGAGGTGTAATAGTATTTAAAGGATGAGACATGACCTCCTACTGAGCGCCTTATATTCTATCAATGCAAATGTCCCATAGTTTTGTGGACTTCGGAGCATTGGTACAACTGGCGCTAAAGTAGTGCACTTCATTATATGAAAACTTGAAATTATTGTCCCCCAATCCTTGCTCTAGTGATAAGAACACAGTCTGTGATGTGGGGGTTAGGCGCACTCCACAAATTTAACCCTACCACAAACAAAAGTGTGGTATTTAAATGGAGAATGGTAAATGCGCAGGCCTCTTTCCACCGAGTTTCAAGCTGTTCGCCTTGGTCTTGGGGATTTCTCAATTATCAAATAGCCCATTGGCATAATATATTAAAACTGAAAAAGCACATAAATACTACTACTAAAAATGGTCTGAGTTACAAAACTGTGGATAAATGACAATAATTAAAGCAAGTACGAGAAGATGTAAGAGCACTCCCATTTCCAATTTAGTGTAGCTGAATTATTATTTTATTCATTTATTAGAAGCCTTTTTTAAAAAAAAAGAAGGGGAAAATGGCCCATTAACTTTTGATGGACAATTTGGTTATTCAACTTTAGAGTTGAGGTCTTTCCACATTTAGTATAAAATATAATAATGATTTTTGCATAATATCGAAGACCACATTATGCAATAGAGCACCAAGACTTGTTTTAGTTCCATTACTTTATTGACTACTGACTATGCCATACCCTCGGGTGCAAGAACGGATATTTTACTAGCTCCTCTCATGTGGCCATGCATCAATCTTCAACTGCGGAATATTTTAATTATAGGCAACTGCTTCCAACCCATGCAAGTGAAACGACTTTTGCTAAAGGATGTCTATAGTGACATCTGACCATGCAATTTGTGCAGGTATCCTTAGATGTTATGCTAGTTCTTTCTCTAGTCAATATGATTTAATTTTATTTTCTCTTACTTCATTCTTCTAGAGGGAGGGGTTATGGGTCCCTGTTAGGTTTTTGAAGTTATTAATTTCAGTCCTTGTCTATATTTTCATCAGTCTTGTAGTTGAAGTTCATGGTTTAGACTAGGTCCTTTTATTTGTTCTTTTCAGTTGTCTCATCTGATCTATGTTATATTTTCAGGATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTGGTCAAGAAGAGCAGGAAACATCGTGAGTTCCATTTTCTGTAGTAGTTGATTTTCCTTTTTTCAAGTTATAATATGTTTACCACCCCCAAAAATTCCCCTTGACTAGAACAATTAAAAAATTCCCCTTAGGAGCCAACAGTGGCATTTCACACTTTTGTCCCTTAGTCACTCGAACGCCCTGACTTCACGGTTGGAGGTGTAGGACACTAGGCTATACCTCCCTTCTCTGTAGTTGTTCTGTCTTCCGTCATTGAATTTGATGTAAATCTGTGGTCATTTTACAGCAGATTCAATTTTACATGGTCTCGAGGTTCAGAGGTTACCGATCACTTTAAATACAATTGACATCTTTCTGAGAAGTTTCTCTTTCCATTTCTCAACAGATGTAGACATTGCAATATTAGTTCGAAATCCACTCCTATGATGCGTCGGGGACCAGCTGGCCCAAGGTCTCTTTGTAATGC</genome_strand>
        <mrna_strand>CCGTTATGTACGGACGGGAGACGATGAACGCTGCACTTCACTTAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTGCTGTAAATGTGGTTCCCCAAAGTCAGAGG......................................................................................GCTTCAGGTGACTTTCCTGGAAGATTAAATCAACCGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTGGTCAAGAAGAGCAGGAAACATC.........................................................................................................................................................................................................................................................................................................................................................................ATGTAGACATTGCAATATTAGTTCGAAATCCCCTCCTATGATGCGTCGGGGACCAGCTGGCCCAGGGTCTCTTTGTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325112" ref_strand="+" ref_description="SGN-E325112 [cTOC-13-G19]">
      <seq>catgtactgacgggagacgatgaacgctgcgcttcaccgagatagacaccagcaaactcagatcgacgacgacgatgatgacgacgtcgtcgctgctgtcggtggcggtggcagtggtgggggaggaatagagtctatggacaaccctactcctcacattcgctacgaccaacatcatcactctcattctcacgcgcttcacaacggcggcgccggcggttctatggagatgaatggtgtggaaggtgtttctcataacgccttgtatggtcctccttccgaaattgttcctactgctggtagtggagcttccgatcagcttacgctgtcgtttcaaggcgaagtgtacgtttttgatgccgtttcacctgaaaaggttcaagcggtgctgttactgttggggggatacgaagtccctcctggtatccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="55049" stop="57023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55349" g_stop="55724" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55725" i_stop="56668" i_length="944">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56669" g_stop="56723" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="431" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E325112" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55349" e_stop="55724"/>
          <exon e_start="56669" e_stop="56723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTACGGACGGGAGACGATGAACGCTGCACTTCACCAAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAGGTATTTCTTTTACTTTGACCTCTCTTTTTGTGCTTACTAAAAATGTTTGCCCTCTAATTTGTGCATCTTGCTCGTTCTTGTGTAGTGTGTTCTTTTATAAGTTTAGCTGAAAAGGTGTTTCTTTTAATTAGCGAGATTGGTCTGCATTTAATTTTTTTGTGTTGCTTGGATTCTTGCTTTTTTTGTGTCTGTCTACAAGAGATTGAGTGACTTAGGGGGAAGGATTTTCAATTTTAGAGATGGGGATAATTCTGTATTTGGCCAAAAGTTCTTGCCTCACTCTCACTCGACTTTTGGAGTTGTTGAGGTATTTCAAGACTCCGAAACTGGTCGTTTCTGAGATTAGATTGTATTTGATTGGCGAATTGGTTAGTGTGTACGGTGAATTGTTTGATATTGATCAAATTATGAAGCAAAGAGGCCATGCTGATCTTTTTTATCTTCCACGAGTAAGAGTGATTCTCACTGGCACGATTTTAGTATCACTGTAATTAAAATCTATGCACCGATGCTGAGTGAGGGGTTATCGCTCATAGGTGAAGTCATGCACTTCATAGAAGTGTTAAAAATGATGCACAGAGTGATCCAAATAAGAAGTCGTTGATGCTCTGAATCTCAACTTAGAAGAGTAAGATTTATGGATACTGAAATTAGTTCGTTTTATTGCAATCTGATCGTTACAGTGCTAAATTCACATACTTAAGAATTTTTTTTGACGTTGAGAATTGTGTGTTTCACTTCAAATGTGTGTGCTGTTTACTTCTCACTTTTCGCTTCAAGCTCCATGGTCCTTATTGCTTTTTTTTGCTCTTTTAGAAAAACTGTTTAGTATATGTATCAGGTAGTGGAATTTGATTCACAATTAGTGGATTTAAAACTTCATTTTGATATTTACAATAATCTTAATAGGGGTAAATTCTGTTTTTATGTTTATTGAGTTTTAGGTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTG</genome_strand>
        <mrna_strand>CATGTACTGACGGGAGACGATGAACGCTGCGCTTCACCGAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209744" ref_strand="+" ref_description="SGN-E209744 [cLEC-52-I8]">
      <seq>cggaaagagctgcttctttaaatcgttttagggaaaagaggaaagaacggtgttttgataaaaagatccgctatactgtgcggaaggaagttgcgatgaggatgcagcgcaagaaaggtcagtttacatctgccaagtcaatacctgacgaagtaggttcttctgcagattggaatgaaggctctggtcaagaagagcaggaaacatcatgtagacattgcaatattagttcgaaatccactcctatgatgcgtcggggaccagctggcccaaggtctctttgtaatgcatgtggactcaagtgggccaataagggaattttaagagatctttctaaagttccagctcctggaactcaggaccaaactgcgaaacctggtgaacagagccatggtgaacctaatggctcggatgacatggctgctatcatcactccggatgacaacaacccagtggggtgaccgcttgaactgtgagggagaatccttctctgcaattattgtggtggcagttgatgttgaagtgagatgaataattgaaattcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="56573" stop="62067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56873" g_stop="56972" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56973" i_stop="58890" i_length="1918">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58891" g_stop="58998" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="208" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58999" i_stop="59359" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59360" g_stop="59465" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="314" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59466" i_stop="61407" i_length="1942">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61408" g_stop="61479" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="386" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61480" i_stop="61606" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61607" g_stop="61768" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="548" r_length="162" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E209744" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56873" e_stop="56972"/>
          <exon e_start="58891" e_stop="58998"/>
          <exon e_start="59360" e_stop="59465"/>
          <exon e_start="61408" e_stop="61479"/>
          <exon e_start="61607" e_stop="61768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAGGTAATAAAACTGTAGTTTTTAATGCATGATGTTGTTTTGTCTGCTTGTTTGAACCATATTCGGAACTAGGTGGAGATAATGTGCAAATTGATGTCTGTTGCGATAGATGTCCCATCTGTAATTGTCCATTCGCTGTGCTAATGATTGATAGGACTAATTCACCCTTCTAAATTAAGTTGACAATAAGAGTAGGAAAGACATTTGCAAATTGTTATACACGAGGGGCGTCTAGCTCTGCGGCAGATGCTTTATATCAGCTTTATGCATTGCTTGAACTATTTGACTGGAATGGTGTAGGAGGTGTTTTGAAGGCAAAAGGAGCATTTATCTTAAAGCAACATTATTTTCAACTGGCTGACCTGCTGGACTTGGCGAATGCTACGAGTCAACTCCAACTTTTTGTAATTTTCTACAGAATTACCTGAAAAAGTAAAAAAGAGTGGAGTATGTCATGACTGAAATATGGCAGGATCACCTGAGGTGCATCTTACTTTATCTTTAAAAAGCAGAGTGCCCCCGAGCTGCACACACTTATTTCATATCTAAGACATTGTTTGAATGTGAATATGTAATTTCTAAATGACCTGACTGCTAAAAAACAGTTGCCGTGAGACAAAATTCTCACTTCCTCTTTACCTTAGGTTTGTGTATAAGAAAAGGTCAACTACAGCATTTTAAGGAATGAGGTAGAACTAACTAAAGAATGCTATAGCGAGGACATTGTAGTGCACTAGGTTGACATTGGAAATATAATAGGATAATTAGTGGTGAAAACATTATCCTATAAGAGGGAAGGGAGGTGTAATAGTATTTAAAGGATGAGACATGACCTCCTACTGAGCGCCTTATATTCTATCAATGCAAATGTCCCATAGTTTTGTGGACTTCGGAGCATTGGTACAACTGGCGCTAAAGTAGTGCACTTCATTATATGAAAACTTGAAATTATTGTCCCCCAATCCTTGCTCTAGTGATAAGAACACAGTCTGTGATGTGGGGGTTAGGCGCACTCCACAAATTTAACCCTACCACAAACAAAAGTGTGGTATTTAAATGGAGAATGGTAAATGCGCAGGCCTCTTTCCACCGAGTTTCAAGCTGTTCGCCTTGGTCTTGGGGATTTCTCAATTATCAAATAGCCCATTGGCATAATATATTAAAACTGAAAAAGCACATAAATACTACTACTAAAAATGGTCTGAGTTACAAAACTGTGGATAAATGACAATAATTAAAGCAAGTACGAGAAGATGTAAGAGCACTCCCATTTCCAATTTAGTGTAGCTGAATTATTATTTTATTCATTTATTAGAAGCCTTTTTTAAAAAAAAAGAAGGGGAAAATGGCCCATTAACTTTTGATGGACAATTTGGTTATTCAACTTTAGAGTTGAGGTCTTTCCACATTTAGTATAAAATATAATAATGATTTTTGCATAATATCGAAGACCACATTATGCAATAGAGCACCAAGACTTGTTTTAGTTCCATTACTTTATTGACTACTGACTATGCCATACCCTCGGGTGCAAGAACGGATATTTTACTAGCTCCTCTCATGTGGCCATGCATCAATCTTCAACTGCGGAATATTTTAATTATAGGCAACTGCTTCCAACCCATGCAAGTGAAACGACTTTTGCTAAAGGATGTCTATAGTGACATCTGACCATGCAATTTGTGCAGGTATCCTTAGATGTTATGCTAGTTCTTTCTCTAGTCAATATGATTTAATTTTATTTTCTCTTACTTCATTCTTCTAGAGGGAGGGGTTATGGGTCCCTGTTAGGTTTTTGAAGTTATTAATTTCAGTCCTTGTCTATATTTTCATCAGTCTTGTAGTTGAAGTTCATGGTTTAGACTAGGTCCTTTTATTTGTTCTTTTCAGTTGTCTCATCTGATCTATGTTATATTTTCAGGATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTGGTCAAGAAGAGCAGGAAACATCGTGAGTTCCATTTTCTGTAGTAGTTGATTTTCCTTTTTTCAAGTTATAATATGTTTACCACCCCCAAAAATTCCCCTTGACTAGAACAATTAAAAAATTCCCCTTAGGAGCCAACAGTGGCATTTCACACTTTTGTCCCTTAGTCACTCGAACGCCCTGACTTCACGGTTGGAGGTGTAGGACACTAGGCTATACCTCCCTTCTCTGTAGTTGTTCTGTCTTCCGTCATTGAATTTGATGTAAATCTGTGGTCATTTTACAGCAGATTCAATTTTACATGGTCTCGAGGTTCAGAGGTTACCGATCACTTTAAATACAATTGACATCTTTCTGAGAAGTTTCTCTTTCCATTTCTCAACAGATGTAGACATTGCAATATTAGTTCGAAATCCACTCCTATGATGCGTCGGGGACCAGCTGGCCCAAGGTCTCTTTGTAATGCATGTGGACTCAAGTGGGCCAATAAGGTTAGTATTGAGTTGAAAATTTTACTCATTTCCATGGTTTTTATTTGAATAGGCATAAATGCCTCGTGATGATTTGCTCCATGATCAATATTACTTATTATTAGTTCCCACCCATTCACATTTTCATTGTTTGAGAACGAGATGTATAAGTAGAGAATTCTAGGGAAAGATATGGTTCGGACGTTCGGTGCAAATAGCATGCATTGATGACTAGGATATCATGTGTGCTCCAATAGTTGAAGAAAAAATATTCTGCTCAAGTATATATACTTTTATCTCCTTCAAATGATTTTTCGCTCTCATTATTGTCCACATTCGCTGATCCATTTTTTAAGCTTCCCCTCAAAACTTCCACTCTATAATACAGAAAAAACTACTCCCTTTGTCCAACAATAGTTGTCCACTATACTAATTTGGGATGTCCAACAATACTTGTCCACTTTATGAAATCAGTGGATTATTTTACACTTCTTTTCTAATTTACCTACTTATAATCATTTCTCTGTGACATTTTTCAACACATTGTATTTATTATATTCAATAGTGAACAAGAATTGTTGGACAGAGGGAGTAAAAAATAGGATGGTTTTGCCTATACCCTGCAACGCCTGCTGAAGTCCGAATATATTCCTCAATTAACAATAAACGCAAATCATACAGTTGTAACAACAAATGTTTGACATGCTTTCCCGTCTTCTTGTACATGAGCGTTTAGTGATATGGATTATTTCCCTTCCTCTCAAATCGATGCTGTTAGAACTGCTCCATATATAGCTTTCCATACAAAGAAATACAGATTTCGACATTTCGTGGTTCAAAAGTGGGAGAAGTCCATATTCTCTCTTATAAGTAGCCTGCTATTAATCTTTATCCAGAAAATATGAGGAGCCTGCTGTTAATCTTTATCCAGAAAACAAAAGGAGCCTGCTATTGATCTTCTTTTTTCAAATCAGTATACAATGTTCTTGAGAGTTATTCTTCTTTCTTTTCTTTTTTTGGTAAAAAGATCTTTGGTTCATTCACCATGGCTTGTAACTGTTGCAATACCTCAAGAACATTATGCACCTTTTATTGCATTTTTCTTTCCAAGTAACTTTGTTTTTTTAAAAAGAAAAAACTTTCTATCTTGTTGTGTGTACAGCTTTCTTTGGCAATTCTACTTGTGTGACTTCCGTCGCAGTATTTGCTTCTCCTGTTCATCATGTGCAGGATAAAGACAAAACACGTTGCTCTTTTGTTTTGGATGATTAACTTCATAATTAACAAGATACATACTTGGCCAGTACCACACTATTAACAGATTCTAACTTTCAATGAAATGCACTCTACATTTTGATACTTATACAAACTTTAATGTTAGCTTTTTAAATAGATTGAAATAAGTATGCGAACTCCTTGGTCATTTCAAAAAATGATCTCAAATGTGACCTTTACTTTGTTCTCTCACAAATCAAGCTTCCGGAGGTTATCATCTTAGAACTGGGTGTTATTAGTTTACAGGTTTTCTGGAGTTGTTATCTCTACCATATTCATTTGTGTTTGAACTCCTACTTGCAACAGTTAAATAATGGAAGTCTATCGGAGCAATGAAATTTTTATCCCAACTTTGTTTTTTTCCCTATTTGAAGTATTTGCACCTAAGATCTACTACCTTTTGGACTTTTTCTTCAATATAATCCTCTGTTAGCTCGCCGGACAGGCCTTTGGTATTGATTAACCTGATATGGGCCCAGTATGTATTTTTCACATTGATGTCTGATAAAGTTCACGACACACTATTCTTTTTGCTTTTGACATCAAATTCTCCTTCACCTTCATTGTTAAGTTCAAAGAAATTTCCGGTCTCGTCATCATTCAACAATCATTTCATTCACTTGCAATTTGTTAAATGGTTTTGGTGAGTGGGAATGCTGCTTTACTCTCCTTTGATCTGTCTCTGCAGGGAATTTTAAGAGATCTTTCTAAAGTTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAGGTACAAAATCTCCACTTTCTTTTTACCATCATTGGGATAGTTTGTAGAACTTGACAAAAAATAAAAAGGTTGATTTTTTAGTTTATTTACTAAAGCTGATTGTCTGTTATACAATTCTCTCCGGTAGAGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCT</genome_strand>
        <mrna_strand>CGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTGGTCAAGAAGAGCAGGAAACATC.........................................................................................................................................................................................................................................................................................................................................................................ATGTAGACATTGCAATATTAGTTCGAAATCCACTCCTATGATGCGTCGGGGACCAGCTGGCCCAAGGTCTCTTTGTAATGCATGTGGACTCAAGTGGGCCAATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATTTTAAGAGATCTTTCTAAAGTTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAG...............................................................................................................................AGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241699" ref_strand="-" ref_description="SGN-E241699 [cLED-36-F7]">
      <seq>agttccagctcctggaactcaggaccaaactgcgaaacctggtgaacagagccatggtgaacctaatggctcggatgacatggctgctatcatcactccggatgacaacaacccagtggggtgaccgcttgaactgtgagggagaatccttctctgcaattattgtggtggcagttgatgttgaagtgagatgaataattgaaattcatctgttgtactatccgccaaaattagattgtaaatagtaaaatattgtactcttaggcatccgacattgtttctcggagttttagtgttttattctggtgttcaaatgtataattgaaatctgaaacttgtcccacgaatcgatacatgcaggcttaaaagtatctttaaatagtttttgtttgctatatgactacaaaggtggaagagcatactgtctttgcattcttatctctattttataaaaatatacgtaaattttacttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="61131" stop="105920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61431" g_stop="61479" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61480" i_stop="61606" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61607" g_stop="62032" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="475" r_length="426" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62033" i_stop="62776" i_length="744">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62777" g_stop="62794" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="493" r_length="18" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E241699" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241699" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61431" e_stop="61479"/>
          <exon e_start="61607" e_stop="62032"/>
          <exon e_start="62777" e_stop="62794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAGGTACAAAATCTCCACTTTCTTTTTACCATCATTGGGATAGTTTGTAGAACTTGACAAAAAATAAAAAGGTTGATTTTTTAGTTTATTTACTAAAGCTGATTGTCTGTTATACAATTCTCTCCGGTAGAGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCTGTTGTACTATCCGCCAAAATTAGATTGTAAATAGTAAAATATTGTACTCTTAGGCATCCGACATTGTTTCTCGGAGTTTTAGTGTTTTATTCTGGTGTTCAAATGTATAATTGAAATCTGAAACTTGTCCCACGAATCGATACATGCAGGCTTAAAAGTATCTTTAAATAGTTTTTGTTTGCTATATGACTACAAAGGTGGAAGAGCATACTGTCTTTGCATTCTTATCTCTATTTTATAAAAATATACGTAAATTTTACTTTTATCTTGCGGCATATCCTCCCCTTTTGTTTCTTTGAGCTAGTTGATTGCCTACCAAAATTATTCATTAGTGAAGAGCACTTGGGAGCTAGTGATATTAATATTAGTTGGACATAACTAACAACTGTCTCAAGTGTTTCGACTATCATAACACTTTGTTTGGATGGTTGTTCCGTATTATTTTATAATGTATCATATTATTATATTAAGTTGTATTGTTTTAATATATAAAATGTTGGATAAATCATTCTCCATCACATCCATAAATTGAATGATAAACCTACAGAAAAAATAGGTTATCAGATAGAGAGCTTTTATGAAAAGTTAGGATAAAACATAAAATATAATAAAGATAAAATGAGAAGAAAATAGTAAGACAACGATGTGTGATCGATACGTTATATAAAATGGGTCTTTATTGTTATCTAACGATGAATTTAAATGGTAATACAATAAAATTTAAATAACAATCTATGCAACGTGTAATAACTATCCAAACAGAGGGGTAAAGGTAGGTTTAAGTAATATCTGCAAGTAAGTTTATGTTTTATAATTTTAAAATTATAGTAACAGATTATATAATTCGATAAGTAGTATTAATCTACTTACATTAACACTGATTATATCATTAAGTCAAATTATGCGTTCATGAAAAGAAATTACTATAGTCTATAAACTTATTATACCGAATCAAATTTAACATCATAATTTTTTTAATTATACAATTTTTTTTCTCATAAAAATAATATTTAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>AGTTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAG...............................................................................................................................AGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCTGTTGTACTATCCGCCAAAATTAGATTGTAAATAGTAAAATATTGTACTCTTAGGCATCCGACATTGTTTCTCGGAGTTTTAGTGTTTTATTCTGGTGTTCAAATGTATAATTGAAATCTGAAACTTGTCCCACGAATCGATACATGCAGGCTTAAAAGTATCTTTAAATAGTTTTTGTTTGCTATATGACTACAAAGGTGGAAGAGCATACTGTCTTTGCATTCTTATCTCTATTTTATAAAAATATACGTAAATTTTACTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258471" ref_strand="+" ref_description="SGN-E258471 [cLEG-47-P23]">
      <seq>ttccagctcctggaactcaggaccaaactgcgaaacctggtgaacagagccatggtgaacctaatggctcggatgacatggctgctatcatcactccggatgacaacaacccagtggggtgaccgcttgaactgtgagggagaatccttctctgcaattattgtggtggcagttgatgttgaagtgagatgaataattgaaattcatctgttgtactatccgccaaaattagattgtaaatagtaaaatattgtactcttaggcatccgacattgtttctcggagttttagtgttttattctggtgttcaaatgtataattgaaatctgaaacttgtcccacgaatcgatacatgcaggcttaaaagtatctttaaataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="61133" stop="105924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61433" g_stop="61479" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61480" i_stop="61606" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61607" g_stop="61938" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="379" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61939" i_stop="62776" i_length="838">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62777" g_stop="62795" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="398" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E258471" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61433" e_stop="61479"/>
          <exon e_start="61607" e_stop="61938"/>
          <exon e_start="62777" e_stop="62795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAGGTACAAAATCTCCACTTTCTTTTTACCATCATTGGGATAGTTTGTAGAACTTGACAAAAAATAAAAAGGTTGATTTTTTAGTTTATTTACTAAAGCTGATTGTCTGTTATACAATTCTCTCCGGTAGAGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCTGTTGTACTATCCGCCAAAATTAGATTGTAAATAGTAAAATATTGTACTCTTAGGCATCCGACATTGTTTCTCGGAGTTTTAGTGTTTTATTCTGGTGTTCAAATGTATAATTGAAATCTGAAACTTGTCCCACGAATCGATACATGCAGGCTTAAAAGTATCTTTAAATAGTTTTTGTTTGCTATATGACTACAAAGGTGGAAGAGCATACTGTCTTTGCATTCTTATCTCTATTTTATAAAAATATACGTAAATTTTACTTTTATCTTGCGGCATATCCTCCCCTTTTGTTTCTTTGAGCTAGTTGATTGCCTACCAAAATTATTCATTAGTGAAGAGCACTTGGGAGCTAGTGATATTAATATTAGTTGGACATAACTAACAACTGTCTCAAGTGTTTCGACTATCATAACACTTTGTTTGGATGGTTGTTCCGTATTATTTTATAATGTATCATATTATTATATTAAGTTGTATTGTTTTAATATATAAAATGTTGGATAAATCATTCTCCATCACATCCATAAATTGAATGATAAACCTACAGAAAAAATAGGTTATCAGATAGAGAGCTTTTATGAAAAGTTAGGATAAAACATAAAATATAATAAAGATAAAATGAGAAGAAAATAGTAAGACAACGATGTGTGATCGATACGTTATATAAAATGGGTCTTTATTGTTATCTAACGATGAATTTAAATGGTAATACAATAAAATTTAAATAACAATCTATGCAACGTGTAATAACTATCCAAACAGAGGGGTAAAGGTAGGTTTAAGTAATATCTGCAAGTAAGTTTATGTTTTATAATTTTAAAATTATAGTAACAGATTATATAATTCGATAAGTAGTATTAATCTACTTACATTAACACTGATTATATCATTAAGTCAAATTATGCGTTCATGAAAAGAAATTACTATAGTCTATAAACTTATTATACCGAATCAAATTTAACATCATAATTTTTTTAATTATACAATTTTTTTTCTCATAAAAATAATATTTAAAAAAAAAAAAAAG</genome_strand>
        <mrna_strand>TTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAG...............................................................................................................................AGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCTGTTGTACTATCCGCCAAAATTAGATTGTAAATAGTAAAATATTGTACTCTTAGGCATCCGACATTGTTTCTCGGAGTTTTAGTGTTTTATTCTGGTGTTCAAATGTATAATTGAAATCTGAAACTTGTCCCACGAATCGATACATGCAGGCTTAAAAGTATCTTTAAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253924" ref_strand="+" ref_description="SGN-E253924 [cLEG-28-B9]">
      <seq>ttccagctcctggaactcaggaccaaactgcgaaacctggtgaacagagccatggtgaacctaatggctcggatgacatggctgctatcatcactccggatgacaacaacccagtggggtgaccgcttgaactgtgagggagaatccttctctgcaattattgtggtggcagttgatgttgaagtgagatgaataattgaaattcatctgttgtactatccgccaaaattagattgtaaatagtaaaatattgtactcttaggcatccgacattgtttctcggagttttagtgttttattctggtgttcaaatgtataattgaaatctgaaacttgtcccacgaatcgatacatgcaggcttaaaagtatctttaaattaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="61133" stop="62237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61433" g_stop="61479" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61480" i_stop="61606" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61607" g_stop="61925" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="366" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="390"/>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E253924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61433" e_stop="61479"/>
          <exon e_start="61607" e_stop="61925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAGGTACAAAATCTCCACTTTCTTTTTACCATCATTGGGATAGTTTGTAGAACTTGACAAAAAATAAAAAGGTTGATTTTTTAGTTTATTTACTAAAGCTGATTGTCTGTTATACAATTCTCTCCGGTAGAGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCTGTTGTACTATCCGCCAAAATTAGATTGTAAATAGTAAAATATTGTACTCTTAGGCATCCGACATTGTTTCTCGGAGTTTTAGTGTTTTATTCTGGTGTTCAAATGTATAATTGAAATCTGAAACTTGTCCCACGAATCGATACATGCAGGCTTAAAA</genome_strand>
        <mrna_strand>TTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAG...............................................................................................................................AGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCTGTTGTACTATCCGCCAAAATTAGATTGTAAATAGTAAAATATTGTACTCTTAGGCATCCGACATTGTTTCTCGGAGTTTTAGTGTTTTATTCTGGTGTTCAAATGTATAATTGAAATCTGAAACTTGTCCCACGAATCGATACATGCAGGCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239588" ref_strand="+" ref_description="SGN-E239588 [cLED-23-H3]">
      <seq>ttttttttttttttttttaaaagtaaaatttacgtatatttttataaaatagagataagaatgcaaagacagtatgctcttccacctttgtagtcatatagcaaacaaaaactatttaaagatacttttaagcctgcatgtatcgattcgtgggacaagtttcagatttcaattatacatttgaacaccagaataaaacactaaaactccgagaaacaatgtcggatgcctaagagtacaatattttactatttacaatctaattttggcggatagtacaacagatgaatttcaattattcatctcacttcaacatcaactgccaccacaataattgcagagaaggattctccctcacagttcaagcggtcaccccactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="105920" stop="61369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62794" g_stop="62779" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62778" i_stop="62035" i_length="744">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62034" g_stop="61669" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="382" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E239588" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62794" e_stop="62779"/>
          <exon e_start="62034" e_stop="61669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTTAAATATTATTTTTATGAGAAAAAAAATTGTATAATTAAAAAAATTATGATGTTAAATTTGATTCGGTATAATAAGTTTATAGACTATAGTAATTTCTTTTCATGAACGCATAATTTGACTTAATGATATAATCAGTGTTAATGTAAGTAGATTAATACTACTTATCGAATTATATAATCTGTTACTATAATTTTAAAATTATAAAACATAAACTTACTTGCAGATATTACTTAAACCTACCTTTACCCCTCTGTTTGGATAGTTATTACACGTTGCATAGATTGTTATTTAAATTTTATTGTATTACCATTTAAATTCATCGTTAGATAACAATAAAGACCCATTTTATATAACGTATCGATCACACATCGTTGTCTTACTATTTTCTTCTCATTTTATCTTTATTATATTTTATGTTTTATCCTAACTTTTCATAAAAGCTCTCTATCTGATAACCTATTTTTTCTGTAGGTTTATCATTCAATTTATGGATGTGATGGAGAATGATTTATCCAACATTTTATATATTAAAACAATACAACTTAATATAATAATATGATACATTATAAAATAATACGGAACAACCATCCAAACAAAGTGTTATGATAGTCGAAACACTTGAGACAGTTGTTAGTTATGTCCAACTAATATTAATATCACTAGCTCCCAAGTGCTCTTCACTAATGAATAATTTTGGTAGGCAATCAACTAGCTCAAAGAAACAAAAGGGGAGGATATGCCGCAAGATAAAAGTAAAATTTACGTATATTTTTATAAAATAGAGATAAGAATGCAAAGACAGTATGCTCTTCCACCTTTGTAGTCATATAGCAAACAAAAACTATTTAAAGATACTTTTAAGCCTGCATGTATCGATTCGTGGGACAAGTTTCAGATTTCAATTATACATTTGAACACCAGAATAAAACACTAAAACTCCGAGAAACAATGTCGGATGCCTAAGAGTACAATATTTTACTATTTACAATCTAATTTTGGCGGATAGTACAACAGATGAATTTCAATTATTCATCTCACTTCAACATCAACTGCCACCACAATAATTGCAGAGAAGGATTCTCCCTCACAGTTCAAGCGGTCACCCCACTGGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAGTAAAATTTACGTATATTTTTATAAAATAGAGATAAGAATGCAAAGACAGTATGCTCTTCCACCTTTGTAGTCATATAGCAAACAAAAACTATTTAAAGATACTTTTAAGCCTGCATGTATCGATTCGTGGGACAAGTTTCAGATTTCAATTATACATTTGAACACCAGAATAAAACACTAAAACTCCGAGAAACAATGTCGGATGCCTAAGAGTACAATATTTTACTATTTACAATCTAATTTTGGCGGATAGTACAACAGATGAATTTCAATTATTCATCTCACTTCAACATCAACTGCCACCACAATAATTGCAGAGAAGGATTCTCCCTCACAGTTCAAGCGGTCACCCCACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236297" ref_strand="+" ref_description="SGN-E236297 [cLED-20-D11]">
      <seq>ttttttttttttttaaaagtaaaatttacgtatatttttataaaatagagataagaatgcaaagacagtatgctcttccacctttgtaggcatatagcaaacaaaaactatttaaagatacttttaagcctgcatgtatcgattcgtgggacaagtttcagatttcaattatacatttgaacaccagaataaaacacttaaactccgagaaacaatgtcggatgcctaagagtacaatattttactatttacaatctaattttggcggatagtacaacagatgaatttcaattattcatctcacttcaacatcaactgccaccacaataattgcagagaaggattctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="63094" stop="61397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62046" g_stop="61697" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E236297" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62046" e_stop="61697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGCCGCAAGATAAAAGTAAAATTTACGTATATTTTTATAAAATAGAGATAAGAATGCAAAGACAGTATGCTCTTCCACCTTTGTAGTCATATAGCAAACAAAAACTATTTAAAGATACTTTTAAGCCTGCATGTATCGATTCGTGGGACAAGTTTCAGATTTCAATTATACATTTGAACACCAGAATAAAACACTAAAACTCCGAGAAACAATGTCGGATGCCTAAGAGTACAATATTTTACTATTTACAATCTAATTTTGGCGGATAGTACAACAGATGAATTTCAATTATTCATCTCACTTCAACATCAACTGCCACCACAATAATTGCAGAGAAGGATTCTCCC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTAAAAGTAAAATTTACGTATATTTTTATAAAATAGAGATAAGAATGCAAAGACAGTATGCTCTTCCACCTTTGTAGGCATATAGCAAACAAAAACTATTTAAAGATACTTTTAAGCCTGCATGTATCGATTCGTGGGACAAGTTTCAGATTTCAATTATACATTTGAACACCAGAATAAAACACTTAAACTCCGAGAAACAATGTCGGATGCCTAAGAGTACAATATTTTACTATTTACAATCTAATTTTGGCGGATAGTACAACAGATGAATTTCAATTATTCATCTCACTTCAACATCAACTGCCACCACAATAATTGCAGAGAAGGATTCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543856" ref_strand="+" ref_description="SGN-E543856 [TUS-65-O6](-)">
      <seq>catcaagaaactctacagagaaaacctcctcgaagaaatgttgcaagaacctgatgagatagccatgaagagaaagcgtacacgtgagacacttcgtgttcttcagcaagctttcaagacattggaggagttaccacttgatgctgagacagttgaaaggggttatagcttgggtactgatctgacaggccttccaaagattcacgggcttccatcatcatcaatgtacactacaagcagtggctcaactggttcacataccagttctccaaagagctctagattgcgcaatgcatcccattcaggtgagctacagttaccaatgtatggtggtgtagattcaaacggtggtgggcataatgctggtatttatccaacagtaggtgtataagagactcaatagatgcagggtttgatcattcacgagtaatttatttgctctctccaccatcattgcaaaacccgtctctggtgcagtggagtgctactattttttgtcatgggcaatgttttgctgagctgatcgctattggcttttacccacttactgtctatttctatgtcaactataaattcattgttcgtagaagctgtacgaaataagaggggacttttcgtctttataggaagaggctagttttgttgcctttcgttatgatagttggcaatttattttctagccgccaatttttgagttcgatacttcatttgctttctcaattttgtcaaatgtgatagtaggaaatatcatcacttgtgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="70789" stop="68875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70489" g_stop="70472" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213">
            <donor d_prob="0.792" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70258" g_stop="70159" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="118" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69822" g_stop="69181" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="760" r_length="642" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="761" polyA_stop="774"/>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E543856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70489" e_stop="70472"/>
          <exon e_start="70258" e_stop="70159"/>
          <exon e_start="69822" e_stop="69181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGAAACTCTACAGGTATTGGAAGTGGAATTTCTTTTTTACCAAGATACTTTGCCAGGATAGTGGGCTATAGTGGCTAATTGATCCTTCATTGGCTTAGCAGCATGAGTTTTATGTGCTTATGTACTTGTATGTTGTTTCTAGCACCTGGCTGCTCAGCCAATCAAGTGCTACACATTTTTCCTGTACTCGTTGTTCTTATCAGTGGTGCTTGTTATTTTGTTGCAGAGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAGGTCAAATCACTACCATTTTCACTCTTGAGTATATTTTTGCATATATATACATTTCAAGGCTCACTACACTAAGCTTTATGATAGAATGTTAATGGTTTTGATAACTAGAATCTTATTTTAAGCTTTATTTTAGGAACTAAGGAGAAAAGTTTGTTCAAGTTGGGAAGAAGTATCAGAACATGAACTCCTAATGTACTTTGCCTTCTCATTTTCATTGTACTCATGAAATCAGTTCTGCCAGAATGTTATGTTTGTCATCATTCTCTAGGTTTCCTTGGCTTATGACTTCACTTACGGAGTACCATTCAGCTGGAACTAATGTTTTCTGGTTCGCAGACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATTTTTTGTCATGGGCAATGTTTTGCTGAGCTGATCGCTATTGGCTTTTACCCACTTACTGTCTATTTCTATGTCAACTATAAATTCATTGTTCGTAGAAGCTGTACGAAATAAGAGGGGACTTTTCGTCTTTATAGGAAGAGGCTAGTTTTGTTGCCTTTCGTTATGATAGTTGGCAATTTATTTTCTAGCCGCCAATTTTTGAGTTCGATACTTCATTTGCTTTCTCAATTTTGTCAAATGTGATAGTAGGAAATATCATCACTTGTGT</genome_strand>
        <mrna_strand>CATCAAGAAACTCTACAG.....................................................................................................................................................................................................................AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG................................................................................................................................................................................................................................................................................................................................................ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATTTTTTGTCATGGGCAATGTTTTGCTGAGCTGATCGCTATTGGCTTTTACCCACTTACTGTCTATTTCTATGTCAACTATAAATTCATTGTTCGTAGAAGCTGTACGAAATAAGAGGGGACTTTTCGTCTTTATAGGAAGAGGCTAGTTTTGTTGCCTTTCGTTATGATAGTTGGCAATTTATTTTCTAGCCGCCAATTTTTGAGTTCGATACTTCATTTGCTTTCTCAATTTTGTCAAATGTGATAGTAGGAAATATCATCACTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379144" ref_strand="+" ref_description="SGN-E379144 [TUS-3-K4](-)">
      <seq>agcaatcatgcattttctggtaaatcacaccaaaagagatcttcacaatgtgttcatcaagaaactctacagagaaaacctcctcgaagaaatgttgcaagaacctgatgagatagccatgaagagaaagcgtacacgtgagacacttcgtgttcttcagcaagctttcaagacattggaggagttaccacttgatgctgagacagttgaaaggggttatagcttgggtactgatctgacaggccttccaaagattcacgggcttccatcatcatcaatgtacactacaagcagtggctcaactggttcacataccagttctccaaagagctctagattgcgcaatgcatcccattcaggtgagctacagttaccaatgtatggtggtgtagattcaaacggtggtgggcataatgctggtatttatccaacagtaggtgtataagagactcaatagatgcagggtttgatcattcacgagtaatttatttgctctctccaccatcattgcaaaacccgtctctggtgcagtggagtgctactattttttgtcatgggcaatgttttgctgagctgatcgctattggcttttacccacttactgtctatttctatgtcaactataaattcattgttcgtagaagctgtacgaaataagagggggattttcgtctttataggtttcggctagttgaatacctttcgttatgatagtggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="70839" stop="68972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70524" g_stop="70472" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="72" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70258" g_stop="70159" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="172" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69822" g_stop="69272" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="721" r_length="549" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E379144" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70524" e_stop="70472"/>
          <exon e_start="70258" e_stop="70159"/>
          <exon e_start="69822" e_stop="69272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAGGTATTGGAAGTGGAATTTCTTTTTTACCAAGATACTTTGCCAGGATAGTGGGCTATAGTGGCTAATTGATCCTTCATTGGCTTAGCAGCATGAGTTTTATGTGCTTATGTACTTGTATGTTGTTTCTAGCACCTGGCTGCTCAGCCAATCAAGTGCTACACATTTTTCCTGTACTCGTTGTTCTTATCAGTGGTGCTTGTTATTTTGTTGCAGAGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAGGTCAAATCACTACCATTTTCACTCTTGAGTATATTTTTGCATATATATACATTTCAAGGCTCACTACACTAAGCTTTATGATAGAATGTTAATGGTTTTGATAACTAGAATCTTATTTTAAGCTTTATTTTAGGAACTAAGGAGAAAAGTTTGTTCAAGTTGGGAAGAAGTATCAGAACATGAACTCCTAATGTACTTTGCCTTCTCATTTTCATTGTACTCATGAAATCAGTTCTGCCAGAATGTTATGTTTGTCATCATTCTCTAGGTTTCCTTGGCTTATGACTTCACTTACGGAGTACCATTCAGCTGGAACTAATGTTTTCTGGTTCGCAGACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATTTTTTGTCATGGGCAATGTTTTGCTGAGCTGATCGCTATTGGCTTTTACCCACTTACTGTCTATTTCTATGTCAACTATAAATTCATTGTTCGTAGAAGCTGTACGAAATAAGAGGGGACTTTTCGTCTTTATAGGAAGAGGCTAGTTTTGTTGCCTTTCGTTATGATAGTTGGCAAT</genome_strand>
        <mrna_strand>GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG.....................................................................................................................................................................................................................AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG................................................................................................................................................................................................................................................................................................................................................ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATTTTTTGTCATGGGCAATGTTTTGCTGAGCTGATCGCTATTGGCTTTTACCCACTTACTGTCTATTTCTATGTCAACTATAAATTCATTGTTCGTAGAAGCTGTACGAAATAAGAGGGGGATTTTCGTCTTTATAGGTTTCGGCTAG-TTGAATACCTTTCGTTATGATAG-TGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368705" ref_strand="+" ref_description="SGN-E368705 [TUS-22-B12]">
      <seq>tttcaagacattggaggagttaccagttgatgctgagacagttgaaaggggttatagcttgggtactgatctgacaggccttccaaagattcacgggcttccatcatcatcaatgtacactacaagcagtggctcaactggttcacataccagttctccaaagagctctagattgcgcaatgcatcccattcaggtgagctacagttaccaatgtatggtggtgtagattcaaacggtggtgggcataatgctggtatttatccaacagtaggtgtataagagactcaatagatgcagggtttgatcattcacgagtaatttatttgctctctccatcatgattgtaaaacccgtctatggtgcagtggagtgctactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="70124" stop="69149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69897" g_stop="69891" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69890" i_stop="69823" i_length="68">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69822" g_stop="69449" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="381" r_length="374" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E368705" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69897" e_stop="69891"/>
          <exon e_start="69822" e_stop="69449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTAGGTTTCCTTGGCTTATGACTTCACTTACGGAGTACCATTCAGCTGGAACTAATGTTTTCTGGTTCGCAGACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATT</genome_strand>
        <mrna_strand>TTTCAAG....................................................................ACATTGGAGGAGTTACCAGTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCATCATGATTGTAAAACCCGTCTATGGTGCAGTGGAGTGCTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238304" ref_strand="+" ref_description="SGN-E238304 [cLED-17-C19]">
      <seq>tttcaagacattggaggagttaccacttgatgctgagacagttgaaaggggttatagcttgggtactgatctgacaggccttccaaagattcacgggcttccatcatcatcaatgtacactacaagcagtggctcaactggttcacataccagttctccaaagagctctagattgcgcaatgcatcccattcaggtgagctacagttaccaatgtatggtggtgtagattcaaacggtggtgggcataatgctggtatttatccaacagtaggtgtataagagactcaatagatgcagggtttgatcattcacgagtaatttatttgctctctccaccatcattgcaaaacccgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="70124" stop="69172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69897" g_stop="69891" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69890" i_stop="69823" i_length="68">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69822" g_stop="69472" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="358" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E238304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69897" e_stop="69891"/>
          <exon e_start="69822" e_stop="69472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTAGGTTTCCTTGGCTTATGACTTCACTTACGGAGTACCATTCAGCTGGAACTAATGTTTTCTGGTTCGCAGACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTC</genome_strand>
        <mrna_strand>TTTCAAG....................................................................ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300066" ref_strand="+" ref_description="SGN-E300066 [cLEW-11-O13]">
      <seq>ttattgcggctanactttgacgttgtcaggaagaatattgaagactcggtacctaaagcaatcatgcattttctggtaaatcacaccaaaagagatcttcacaatgtgttcatcaagaaactctacagagaaaacctcctcgaagaaatgttgcaagaacctgatgagatagccatgaagagaaagcgtacacgtgagacacttcgtgttcttcagcaagctttcaagacattggaggagttaccacttgatgctgagacagttgaaaggggttatagcttgggtactgatctgacaggccttccaaagattcacgggcttccatcatcatcaatgtacactacaagcagtggctcaactggttcacataccagttctccaaagagctctagattgcgcaatgcatcccattcaggtgagctacagttaccaatgtatggtggtgtagattcaaacggtggtgggcataatgctggtatttatccaacagtaggtgtataagagactcaatagatgcagggtttgatcattcacgagtaatttatttgctctctccaccatcattgcaaaacccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="71661" stop="69174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71361" g_stop="71287" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70472" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="128" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70258" g_stop="70159" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="228" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69822" g_stop="69474" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="577" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E300066" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71361" e_stop="71287"/>
          <exon e_start="70524" e_stop="70472"/>
          <exon e_start="70258" e_stop="70159"/>
          <exon e_start="69822" e_stop="69474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTGGTAATTCTGAATAGAAATGACTTGGTCCTTCACATATTTCATGCTTTGATGTTTTTGACCTCTATGCAAGTGGCCTTTCAATGTACTTATGCTTAGGGATTCTCCATTTATTGGCAGTCTTGAGGATTCCTAAATCTACTCTTCTAGCACTTTCTGTGTGCTGATTTAATGATGATAGAAGTTCTTCCCATCTCGTTGCGTTCTCTTATTTCCTTCTTATGGATGTTCTCTTTCAGTTAGAATTTTCAGCACTAGAAGACACTGACCCTAGAATATGTAGTAATATGCCAACATGGGATTTTAGACAACCTGGGGGCAGAATGGATGAAACAAGCACAGTAATCTGCTTTCTTTTATTTTCTTAAAGCACAGGGGAATAGTGGCACTGTTTGGTTTTCTGCTAACAGTTCAGAGGCTAACTTTTATCTGGGGAAAGTAATTTTCTCTATTCTACCTTCAGCTAACTTAGTATTGTGTCATAGTGTCGATCTGTCAAGTGTATTTCTTCAATTGCTGATTTTGTGAAAATTGTGAAGTTCTTTATTTTATCTGGTGAAAATTTCTGTATTGTTGGAACTGTCGACTACTTTCTGTTGATAATTTTTTCTAATTAGCCAATATGAGGGAAATGATATCTGGTGTCTGTTAACTTCATTTAGACTCTGGGTGTTGTGTTTTCAGTTTTTTTAGTAAGAATGCTAATGTGATCTTCATTTTCGATTTCTTTATTGTTGACAAAAATGGTTTTAATCCTTTCTCCAGGTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAGGTATTGGAAGTGGAATTTCTTTTTTACCAAGATACTTTGCCAGGATAGTGGGCTATAGTGGCTAATTGATCCTTCATTGGCTTAGCAGCATGAGTTTTATGTGCTTATGTACTTGTATGTTGTTTCTAGCACCTGGCTGCTCAGCCAATCAAGTGCTACACATTTTTCCTGTACTCGTTGTTCTTATCAGTGGTGCTTGTTATTTTGTTGCAGAGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAGGTCAAATCACTACCATTTTCACTCTTGAGTATATTTTTGCATATATATACATTTCAAGGCTCACTACACTAAGCTTTATGATAGAATGTTAATGGTTTTGATAACTAGAATCTTATTTTAAGCTTTATTTTAGGAACTAAGGAGAAAAGTTTGTTCAAGTTGGGAAGAAGTATCAGAACATGAACTCCTAATGTACTTTGCCTTCTCATTTTCATTGTACTCATGAAATCAGTTCTGCCAGAATGTTATGTTTGTCATCATTCTCTAGGTTTCCTTGGCTTATGACTTCACTTACGGAGTACCATTCAGCTGGAACTAATGTTTTCTGGTTCGCAGACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTC</genome_strand>
        <mrna_strand>TTATTGCGGCTANACTTTGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG.....................................................................................................................................................................................................................AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG................................................................................................................................................................................................................................................................................................................................................ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304744" ref_strand="+" ref_description="SGN-E304744 [cLEX-11-F8]">
      <seq>actattgaaattgccattacaaaactgttattgcggtcatactatgacgttgtcaggaagaatattgaagactcggtacctaaagcaatcatgcattttctggtaaatcacaccaaaagagatcttcacaatgtgttcatcaagaaactctacagagaaaacctcctcgaagaaatgttgcaagaacctgatgagatagccatgaagagaaagcgtacacgtgagacacttcgtgttcttcagcaagctttcaagacattggaggagttaccacttgatgctgagacagttgaaaggggttatagcttgggtactgatctgacaggccttccaaagattcacgggcttccatcatcatcaatgtacactacaagcagtggctcaactggttcacatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="71688" stop="69379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71388" g_stop="71287" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70472" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="155" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70258" g_stop="70159" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="255" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69822" g_stop="69679" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="399" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E304744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71388" e_stop="71287"/>
          <exon e_start="70524" e_stop="70472"/>
          <exon e_start="70258" e_stop="70159"/>
          <exon e_start="69822" e_stop="69679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTGGTAATTCTGAATAGAAATGACTTGGTCCTTCACATATTTCATGCTTTGATGTTTTTGACCTCTATGCAAGTGGCCTTTCAATGTACTTATGCTTAGGGATTCTCCATTTATTGGCAGTCTTGAGGATTCCTAAATCTACTCTTCTAGCACTTTCTGTGTGCTGATTTAATGATGATAGAAGTTCTTCCCATCTCGTTGCGTTCTCTTATTTCCTTCTTATGGATGTTCTCTTTCAGTTAGAATTTTCAGCACTAGAAGACACTGACCCTAGAATATGTAGTAATATGCCAACATGGGATTTTAGACAACCTGGGGGCAGAATGGATGAAACAAGCACAGTAATCTGCTTTCTTTTATTTTCTTAAAGCACAGGGGAATAGTGGCACTGTTTGGTTTTCTGCTAACAGTTCAGAGGCTAACTTTTATCTGGGGAAAGTAATTTTCTCTATTCTACCTTCAGCTAACTTAGTATTGTGTCATAGTGTCGATCTGTCAAGTGTATTTCTTCAATTGCTGATTTTGTGAAAATTGTGAAGTTCTTTATTTTATCTGGTGAAAATTTCTGTATTGTTGGAACTGTCGACTACTTTCTGTTGATAATTTTTTCTAATTAGCCAATATGAGGGAAATGATATCTGGTGTCTGTTAACTTCATTTAGACTCTGGGTGTTGTGTTTTCAGTTTTTTTAGTAAGAATGCTAATGTGATCTTCATTTTCGATTTCTTTATTGTTGACAAAAATGGTTTTAATCCTTTCTCCAGGTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAGGTATTGGAAGTGGAATTTCTTTTTTACCAAGATACTTTGCCAGGATAGTGGGCTATAGTGGCTAATTGATCCTTCATTGGCTTAGCAGCATGAGTTTTATGTGCTTATGTACTTGTATGTTGTTTCTAGCACCTGGCTGCTCAGCCAATCAAGTGCTACACATTTTTCCTGTACTCGTTGTTCTTATCAGTGGTGCTTGTTATTTTGTTGCAGAGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAGGTCAAATCACTACCATTTTCACTCTTGAGTATATTTTTGCATATATATACATTTCAAGGCTCACTACACTAAGCTTTATGATAGAATGTTAATGGTTTTGATAACTAGAATCTTATTTTAAGCTTTATTTTAGGAACTAAGGAGAAAAGTTTGTTCAAGTTGGGAAGAAGTATCAGAACATGAACTCCTAATGTACTTTGCCTTCTCATTTTCATTGTACTCATGAAATCAGTTCTGCCAGAATGTTATGTTTGTCATCATTCTCTAGGTTTCCTTGGCTTATGACTTCACTTACGGAGTACCATTCAGCTGGAACTAATGTTTTCTGGTTCGCAGACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACC</genome_strand>
        <mrna_strand>ACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG.....................................................................................................................................................................................................................AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG................................................................................................................................................................................................................................................................................................................................................ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700093" ref_strand="+" ref_description="SGN-E700093 [FA12AD11]">
      <seq>caagccattcagtgatactgcactgagcatggatcatgctttctcaatgatccacttgagagagcccccaagtgtcttgaggccttcagaaactcattcagatcaggaaaccattgaaattgccattacaaaactgttattgcggtcatactatgacgttgtcaggaagaatattgaagactcggtacctaaagcaatcatgcattttctggtaaatcacaccaaaagagatcttcacaatgtgtatcatcaagaaactctacagagaaaacctcctcgaagaaatgttgcaagaacctgatgacatagccatgaagagaaagcgtacacgtgacacacttcgtgttcttcagcaagctttcaagacattggaggagttaccacttgatgctgacacagctgaaaggggttatagcttgggtactgatctgacaggccttctaaagattcacgggcttccatcatcatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="71893" stop="69416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71593" g_stop="71530" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71433" g_stop="71287" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="211" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70472" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="265" r_length="54" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213">
            <donor d_prob="0.792" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70258" g_stop="70159" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="365" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69822" g_stop="69716" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="472" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E700093" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71593" e_stop="71530"/>
          <exon e_start="71433" e_stop="71287"/>
          <exon e_start="70524" e_stop="70472"/>
          <exon e_start="70258" e_stop="70159"/>
          <exon e_start="69822" e_stop="69716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAGGTATCAGTTTTGAAGGCCCTCTCTGCTGTATGATTACTTTATAGATTAGGTTGGTGATTAAACCAAACATGACATCTCTATGTGTTCTGCTTGAAGCCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTGGTAATTCTGAATAGAAATGACTTGGTCCTTCACATATTTCATGCTTTGATGTTTTTGACCTCTATGCAAGTGGCCTTTCAATGTACTTATGCTTAGGGATTCTCCATTTATTGGCAGTCTTGAGGATTCCTAAATCTACTCTTCTAGCACTTTCTGTGTGCTGATTTAATGATGATAGAAGTTCTTCCCATCTCGTTGCGTTCTCTTATTTCCTTCTTATGGATGTTCTCTTTCAGTTAGAATTTTCAGCACTAGAAGACACTGACCCTAGAATATGTAGTAATATGCCAACATGGGATTTTAGACAACCTGGGGGCAGAATGGATGAAACAAGCACAGTAATCTGCTTTCTTTTATTTTCTTAAAGCACAGGGGAATAGTGGCACTGTTTGGTTTTCTGCTAACAGTTCAGAGGCTAACTTTTATCTGGGGAAAGTAATTTTCTCTATTCTACCTTCAGCTAACTTAGTATTGTGTCATAGTGTCGATCTGTCAAGTGTATTTCTTCAATTGCTGATTTTGTGAAAATTGTGAAGTTCTTTATTTTATCTGGTGAAAATTTCTGTATTGTTGGAACTGTCGACTACTTTCTGTTGATAATTTTTTCTAATTAGCCAATATGAGGGAAATGATATCTGGTGTCTGTTAACTTCATTTAGACTCTGGGTGTTGTGTTTTCAGTTTTTTTAGTAAGAATGCTAATGTGATCTTCATTTTCGATTTCTTTATTGTTGACAAAAATGGTTTTAATCCTTTCTCCAGGTAAATCACACCAAAAGAGATCTTCACAATGTGT-TCATCAAGAAACTCTACAGGTATTGGAAGTGGAATTTCTTTTTTACCAAGATACTTTGCCAGGATAGTGGGCTATAGTGGCTAATTGATCCTTCATTGGCTTAGCAGCATGAGTTTTATGTGCTTATGTACTTGTATGTTGTTTCTAGCACCTGGCTGCTCAGCCAATCAAGTGCTACACATTTTTCCTGTACTCGTTGTTCTTATCAGTGGTGCTTGTTATTTTGTTGCAGAGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAGGTCAAATCACTACCATTTTCACTCTTGAGTATATTTTTGCATATATATACATTTCAAGGCTCACTACACTAAGCTTTATGATAGAATGTTAATGGTTTTGATAACTAGAATCTTATTTTAAGCTTTATTTTAGGAACTAAGGAGAAAAGTTTGTTCAAGTTGGGAAGAAGTATCAGAACATGAACTCCTAATGTACTTTGCCTTCTCATTTTCATTGTACTCATGAAATCAGTTCTGCCAGAATGTTATGTTTGTCATCATTCTCTAGGTTTCCTTGGCTTATGACTTCACTTACGGAGTACCATTCAGCTGGAACTAATGTTTTCTGGTTCGCAGACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAAT</genome_strand>
        <mrna_strand>CAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG................................................................................................CCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACCATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCACACCAAAAGAGATCTTCACAATGTGTATCATCAAGAAACTCTACAG.....................................................................................................................................................................................................................AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGACATAGCCATGAAGAGAAAGCGTACACGTGACACACTTCGTGTTCTTCAGCAAGCTTTCAAG................................................................................................................................................................................................................................................................................................................................................ACATTGGAGGAGTTACCACTTGATGCTGACACAGCTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCTAAAGATTCACGGGCTTCCATCATCATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302075" ref_strand="+" ref_description="SGN-E302075 [cLEW-19-I3]">
      <seq>agaaaactacagcatcaggatcaaatgttggttcaagttggggaatatcatcaatatttggtggctcggacaatcgtgcatctgtaaaagacaatttcattaacaagccattcagtgatactgcactgagcatggatcatgctttctcaatgatccacttgagagagcctccaagtgtcttgaggccttcagaaactcattcagatcaggaaactattgaaattgccattacaaaactgttattgcggtcatactatgacgttgtcaggaagaatattgaagactcggtacctaaagcaatcatgcattttctggtaaatcacaccaaaagagatcttcacaatgtgttcatcaagaaactctacagagaaaacctcctcgaagaaatgttgcaagaacctgatgagatagccatgaagagaaagcgtacacgtgagacacttcgtgttcttcagcaagctttcaagacattggaggagttaccacttgatgctgagacagttgaaaggggttatagcctgggtactgatctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="71995" stop="69455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71678" g_stop="71530" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="167" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71433" g_stop="71287" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="314" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70472" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="367" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70258" g_stop="70159" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="467" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69822" g_stop="69755" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="535" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E302075" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71678" e_stop="71530"/>
          <exon e_start="71433" e_stop="71287"/>
          <exon e_start="70524" e_stop="70472"/>
          <exon e_start="70258" e_stop="70159"/>
          <exon e_start="69822" e_stop="69755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAGGTATCAGTTTTGAAGGCCCTCTCTGCTGTATGATTACTTTATAGATTAGGTTGGTGATTAAACCAAACATGACATCTCTATGTGTTCTGCTTGAAGCCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTGGTAATTCTGAATAGAAATGACTTGGTCCTTCACATATTTCATGCTTTGATGTTTTTGACCTCTATGCAAGTGGCCTTTCAATGTACTTATGCTTAGGGATTCTCCATTTATTGGCAGTCTTGAGGATTCCTAAATCTACTCTTCTAGCACTTTCTGTGTGCTGATTTAATGATGATAGAAGTTCTTCCCATCTCGTTGCGTTCTCTTATTTCCTTCTTATGGATGTTCTCTTTCAGTTAGAATTTTCAGCACTAGAAGACACTGACCCTAGAATATGTAGTAATATGCCAACATGGGATTTTAGACAACCTGGGGGCAGAATGGATGAAACAAGCACAGTAATCTGCTTTCTTTTATTTTCTTAAAGCACAGGGGAATAGTGGCACTGTTTGGTTTTCTGCTAACAGTTCAGAGGCTAACTTTTATCTGGGGAAAGTAATTTTCTCTATTCTACCTTCAGCTAACTTAGTATTGTGTCATAGTGTCGATCTGTCAAGTGTATTTCTTCAATTGCTGATTTTGTGAAAATTGTGAAGTTCTTTATTTTATCTGGTGAAAATTTCTGTATTGTTGGAACTGTCGACTACTTTCTGTTGATAATTTTTTCTAATTAGCCAATATGAGGGAAATGATATCTGGTGTCTGTTAACTTCATTTAGACTCTGGGTGTTGTGTTTTCAGTTTTTTTAGTAAGAATGCTAATGTGATCTTCATTTTCGATTTCTTTATTGTTGACAAAAATGGTTTTAATCCTTTCTCCAGGTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAGGTATTGGAAGTGGAATTTCTTTTTTACCAAGATACTTTGCCAGGATAGTGGGCTATAGTGGCTAATTGATCCTTCATTGGCTTAGCAGCATGAGTTTTATGTGCTTATGTACTTGTATGTTGTTTCTAGCACCTGGCTGCTCAGCCAATCAAGTGCTACACATTTTTCCTGTACTCGTTGTTCTTATCAGTGGTGCTTGTTATTTTGTTGCAGAGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAGGTCAAATCACTACCATTTTCACTCTTGAGTATATTTTTGCATATATATACATTTCAAGGCTCACTACACTAAGCTTTATGATAGAATGTTAATGGTTTTGATAACTAGAATCTTATTTTAAGCTTTATTTTAGGAACTAAGGAGAAAAGTTTGTTCAAGTTGGGAAGAAGTATCAGAACATGAACTCCTAATGTACTTTGCCTTCTCATTTTCATTGTACTCATGAAATCAGTTCTGCCAGAATGTTATGTTTGTCATCATTCTCTAGGTTTCCTTGGCTTATGACTTCACTTACGGAGTACCATTCAGCTGGAACTAATGTTTTCTGGTTCGCAGACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGAC</genome_strand>
        <mrna_strand>GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG................................................................................................CCTCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG.....................................................................................................................................................................................................................AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG................................................................................................................................................................................................................................................................................................................................................ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCCTGGGTACTGATCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697614" ref_strand="+" ref_description="SGN-E697614 [FA03CD03]">
      <seq>cgccttattgagatggagatggattacataaatacttcacatccaaattttattggtgggactaaagctcatgagatggcattacagcaggtcaagtcctctaggattgctgcaccgaatccgaggcagaaagatggcgtagatttagaaaaagcaccaacctctgaaagaagtctaaaatcacgtgctatacttgccagatcagttggtggttttgtccctgatcaggttgttcggcctgctccagaagttgagaaaactacagcatcaggatcaaatgttggttcaagttggggaatatcatcaatatttggtggctcggacaatcgtgcatctgtaaaagacaatttcattaacaagccattcagtgatactgcactgagcatggatcatgctttctcaatgatccacttgagagagcccccaagtgtcttgaggccttcagaaactcattcagatcaggaaactattgaaattgccattacaaaactgttattgcggtcatactatgacgttgtcaggaagaatattgaagactcggtacctaaagcaatcatgcattttctggtaaatcacaccaaaagagatcttcacaatgtgttcatcaagaaactctacagagaaaacctcctcgaagacatgttgcaagaacctgatgagatacccatgaagagaaagcgtacccgtgagacacttcgtgttcttcagcaagctttcaagacattggaggagttaccacttgatgctgaaacagttgaaaggggttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="73247" stop="69475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72947" g_stop="72930" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72555" i_length="375">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72554" g_stop="72441" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="132" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72440" i_stop="72307" i_length="134">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72306" g_stop="72211" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="228" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72210" i_stop="72075" i_length="136">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72074" g_stop="72032" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="271" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72031" i_stop="71679" i_length="353">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71678" g_stop="71530" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="420" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71433" g_stop="71287" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="567" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70524" g_stop="70472" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="620" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70258" g_stop="70159" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="720" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="69822" g_stop="69775" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="768" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E697614" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72947" e_stop="72930"/>
          <exon e_start="72554" e_stop="72441"/>
          <exon e_start="72306" e_stop="72211"/>
          <exon e_start="72074" e_stop="72032"/>
          <exon e_start="71678" e_stop="71530"/>
          <exon e_start="71433" e_stop="71287"/>
          <exon e_start="70524" e_stop="70472"/>
          <exon e_start="70258" e_stop="70159"/>
          <exon e_start="69822" e_stop="69775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTTATTGAGATGGAGGTATGTCAAAATGTTGGGTGTTTTGTTTGGTTTTGCTTATACCTAACACAATAAACACATTTGGTGTTTAAGTTTATTGAATTGATTGATAAGTGTCAACTATTTGTGAAATATTATGCTAGAATTTCAATCTGTTCTTTCTGTACATATCACAATCAAATTTTACGATTGTTGTATTGCCCTGCAGTTGTAATTAACTAATGGTATCAGGGTCTATGCTCAGCTGACATCTCAGATAAAAACTAGCTCATTTGATAGATGCCAAGATCTTGATGTAAAAGTTCGTGAATTGCTTTAGCAAATCACTAAAATTCTTAGGACTCTTTTGCTGTTAAAGTTTTTATATTGTTCAACTTAATTGTTTTTCTGTTGCAGATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCTGTTCGTATACTTTTTGCAATTGGTCTTGCAAATTATATCATACTGACCTTATCAAAAGAAAAAAATATATCATACTGATATTTTAATTTTAATTTTTTTTGCTTATTGCTATTCAGGATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAGGTTGGCCTTTTCTGCATCATCTCCAAGTTTAGTTTCGTCATCGTCTCCCTGATCAACATTGCACAGCTTTCAAATTTCAAGTGCAAGGCACTGAAGTTAATCACACTGATTAATGTTCTTTTTTGACTGGGAACAGGTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAGGTGTGTTTCCATCTGGCGATACATGATGTGTTCATTTATGCCAGACGTTTGTTAATTGGAAGTACATAATTAATTGGTTATTTTTTGAGAATTGGTAGCAAAAATAACTATTAAATGAGTTATTAGTTATTTTCACAAGTTGAATATTGTATATAAGGATTAGCCATTTGCCAAATGCGGCTTTATGAAGAAGTCCTTACTTAAGTACCTTGTGGTACACTTAAGCTCAAAAACTCCATGAACTTTTATGTTGCTTGTATTATGAATTGATGTCCTTCTCCTTATAATCTTTAGAAAATATTTTGTTTGCTCGGTGTTATTGCCAAGCCATTGCTGATATATCTCTTCATTAGGATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAGGTATCAGTTTTGAAGGCCCTCTCTGCTGTATGATTACTTTATAGATTAGGTTGGTGATTAAACCAAACATGACATCTCTATGTGTTCTGCTTGAAGCCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTGGTAATTCTGAATAGAAATGACTTGGTCCTTCACATATTTCATGCTTTGATGTTTTTGACCTCTATGCAAGTGGCCTTTCAATGTACTTATGCTTAGGGATTCTCCATTTATTGGCAGTCTTGAGGATTCCTAAATCTACTCTTCTAGCACTTTCTGTGTGCTGATTTAATGATGATAGAAGTTCTTCCCATCTCGTTGCGTTCTCTTATTTCCTTCTTATGGATGTTCTCTTTCAGTTAGAATTTTCAGCACTAGAAGACACTGACCCTAGAATATGTAGTAATATGCCAACATGGGATTTTAGACAACCTGGGGGCAGAATGGATGAAACAAGCACAGTAATCTGCTTTCTTTTATTTTCTTAAAGCACAGGGGAATAGTGGCACTGTTTGGTTTTCTGCTAACAGTTCAGAGGCTAACTTTTATCTGGGGAAAGTAATTTTCTCTATTCTACCTTCAGCTAACTTAGTATTGTGTCATAGTGTCGATCTGTCAAGTGTATTTCTTCAATTGCTGATTTTGTGAAAATTGTGAAGTTCTTTATTTTATCTGGTGAAAATTTCTGTATTGTTGGAACTGTCGACTACTTTCTGTTGATAATTTTTTCTAATTAGCCAATATGAGGGAAATGATATCTGGTGTCTGTTAACTTCATTTAGACTCTGGGTGTTGTGTTTTCAGTTTTTTTAGTAAGAATGCTAATGTGATCTTCATTTTCGATTTCTTTATTGTTGACAAAAATGGTTTTAATCCTTTCTCCAGGTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAGGTATTGGAAGTGGAATTTCTTTTTTACCAAGATACTTTGCCAGGATAGTGGGCTATAGTGGCTAATTGATCCTTCATTGGCTTAGCAGCATGAGTTTTATGTGCTTATGTACTTGTATGTTGTTTCTAGCACCTGGCTGCTCAGCCAATCAAGTGCTACACATTTTTCCTGTACTCGTTGTTCTTATCAGTGGTGCTTGTTATTTTGTTGCAGAGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAGGTCAAATCACTACCATTTTCACTCTTGAGTATATTTTTGCATATATATACATTTCAAGGCTCACTACACTAAGCTTTATGATAGAATGTTAATGGTTTTGATAACTAGAATCTTATTTTAAGCTTTATTTTAGGAACTAAGGAGAAAAGTTTGTTCAAGTTGGGAAGAAGTATCAGAACATGAACTCCTAATGTACTTTGCCTTCTCATTTTCATTGTACTCATGAAATCAGTTCTGCCAGAATGTTATGTTTGTCATCATTCTCTAGGTTTCCTTGGCTTATGACTTCACTTACGGAGTACCATTCAGCTGGAACTAATGTTTTCTGGTTCGCAGACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTAT</genome_strand>
        <mrna_strand>CGCCTTATTGAGATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAA......................................................................................................................................GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAG........................................................................................................................................GTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAG.................................................................................................................................................................................................................................................................................................................................................................GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG................................................................................................CCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG.....................................................................................................................................................................................................................AGAAAACCTCCTCGAAGACATGTTGCAAGAACCTGATGAGATACCCATGAAGAGAAAGCGTACCCGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG................................................................................................................................................................................................................................................................................................................................................ACATTGGAGGAGTTACCACTTGATGCTGAAACAGTTGAAAGGGGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313158" ref_strand="+" ref_description="SGN-E313158 [cTOA-18-K20]">
      <seq>atcaggatcaaatgttggttcaagtgggggaatatcaggaagattaggtggctcggacaatccagcatgcgtaaaagacaatttcattaacaggccattcagtgatactgcactgagcatggatcatgctttctcaatgatccacttgagagagccaccaagtgaataagaggccttgagaaactcattcagatcaggaaactattgaaattgccattacaaaactggtattgcggtcatactatgacgatgccaagaagaatatcgaagactcggtgcctgaagcaatcatgcattttctggtaaatcacaccaaaggagatcttcacaatgtgtgcatcaagagactctacagagaaaacctcctctaagaaatgttgcaagaacctgatgagatagccatgaagagaaagcggacacgtgagacactttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="71983" stop="69881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71683" g_stop="71530" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71433" g_stop="71287" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="302" r_length="148" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762">
            <donor d_prob="0.926" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70472" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="355" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213">
            <donor d_prob="0.792" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70258" g_stop="70180" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="434" r_length="79" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E313158" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71683" e_stop="71530"/>
          <exon e_start="71433" e_stop="71287"/>
          <exon e_start="70524" e_stop="70472"/>
          <exon e_start="70258" e_stop="70180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAGGTATCAGTTTTGAAGGCCCTCTCTGCTGTATGATTACTTTATAGATTAGGTTGGTGATTAAACCAAACATGACATCTCTATGTGTTCTGCTTGAAGCCCCCAAGTGTCT-TGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTGGTAATTCTGAATAGAAATGACTTGGTCCTTCACATATTTCATGCTTTGATGTTTTTGACCTCTATGCAAGTGGCCTTTCAATGTACTTATGCTTAGGGATTCTCCATTTATTGGCAGTCTTGAGGATTCCTAAATCTACTCTTCTAGCACTTTCTGTGTGCTGATTTAATGATGATAGAAGTTCTTCCCATCTCGTTGCGTTCTCTTATTTCCTTCTTATGGATGTTCTCTTTCAGTTAGAATTTTCAGCACTAGAAGACACTGACCCTAGAATATGTAGTAATATGCCAACATGGGATTTTAGACAACCTGGGGGCAGAATGGATGAAACAAGCACAGTAATCTGCTTTCTTTTATTTTCTTAAAGCACAGGGGAATAGTGGCACTGTTTGGTTTTCTGCTAACAGTTCAGAGGCTAACTTTTATCTGGGGAAAGTAATTTTCTCTATTCTACCTTCAGCTAACTTAGTATTGTGTCATAGTGTCGATCTGTCAAGTGTATTTCTTCAATTGCTGATTTTGTGAAAATTGTGAAGTTCTTTATTTTATCTGGTGAAAATTTCTGTATTGTTGGAACTGTCGACTACTTTCTGTTGATAATTTTTTCTAATTAGCCAATATGAGGGAAATGATATCTGGTGTCTGTTAACTTCATTTAGACTCTGGGTGTTGTGTTTTCAGTTTTTTTAGTAAGAATGCTAATGTGATCTTCATTTTCGATTTCTTTATTGTTGACAAAAATGGTTTTAATCCTTTCTCCAGGTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAGGTATTGGAAGTGGAATTTCTTTTTTACCAAGATACTTTGCCAGGATAGTGGGCTATAGTGGCTAATTGATCCTTCATTGGCTTAGCAGCATGAGTTTTATGTGCTTATGTACTTGTATGTTGTTTCTAGCACCTGGCTGCTCAGCCAATCAAGTGCTACACATTTTTCCTGTACTCGTTGTTCTTATCAGTGGTGCTTGTTATTTTGTTGCAGAGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGT</genome_strand>
        <mrna_strand>ATCAGGATCAAATGTTGGTTCAAGTGGGGGAATATCAGGAAGATTAGGTGGCTCGGACAATCCAGCATGCGTAAAAGACAATTTCATTAACAGGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG................................................................................................CCACCAAGTGAATAAGAGGCCTTGAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGGTATTGCGGTCATACTATGACGATGCCAAGAAGAATATCGAAGACTCGGTGCCTGAAGCAATCATGCATTTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCACACCAAAGGAGATCTTCACAATGTGTGCATCAAGAGACTCTACAG.....................................................................................................................................................................................................................AGAAAACCTCCTCTAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGGACACGTGAGACACTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244620" ref_strand="+" ref_description="SGN-E244620 [cLED-38-J20]">
      <seq>aaactacagcatcaggatcaaatgttggttcaagttggggaatatcatcaatatttggtggctcggacaatcgtgcatctgtaaaagacaatttcattaacaagccattcagtgatactgcactgagcatggatcatgctttctcaatgatccacttgagagagcccccaagtgtcttgaggccttcagaaactcattcagatcaggaaactattgaaattgccattacaaaactgttattgcggtcatactatgacgttgtcaggaagaatattgaagactcggtacctaaagcaatcatgcattttctggtaaatcacaccaaaagagatcttcacaatgtgttcatcaagaaactctacagagaaaacctcctcgaagaaatgttgcaagaacctgatgagatagccatgaagagaaagcgtacacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="71991" stop="69891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71678" g_stop="71530" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="164" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71433" g_stop="71287" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="311" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70472" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="364" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70258" g_stop="70191" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="432" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E244620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71678" e_stop="71530"/>
          <exon e_start="71433" e_stop="71287"/>
          <exon e_start="70524" e_stop="70472"/>
          <exon e_start="70258" e_stop="70191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAGGTATCAGTTTTGAAGGCCCTCTCTGCTGTATGATTACTTTATAGATTAGGTTGGTGATTAAACCAAACATGACATCTCTATGTGTTCTGCTTGAAGCCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTGGTAATTCTGAATAGAAATGACTTGGTCCTTCACATATTTCATGCTTTGATGTTTTTGACCTCTATGCAAGTGGCCTTTCAATGTACTTATGCTTAGGGATTCTCCATTTATTGGCAGTCTTGAGGATTCCTAAATCTACTCTTCTAGCACTTTCTGTGTGCTGATTTAATGATGATAGAAGTTCTTCCCATCTCGTTGCGTTCTCTTATTTCCTTCTTATGGATGTTCTCTTTCAGTTAGAATTTTCAGCACTAGAAGACACTGACCCTAGAATATGTAGTAATATGCCAACATGGGATTTTAGACAACCTGGGGGCAGAATGGATGAAACAAGCACAGTAATCTGCTTTCTTTTATTTTCTTAAAGCACAGGGGAATAGTGGCACTGTTTGGTTTTCTGCTAACAGTTCAGAGGCTAACTTTTATCTGGGGAAAGTAATTTTCTCTATTCTACCTTCAGCTAACTTAGTATTGTGTCATAGTGTCGATCTGTCAAGTGTATTTCTTCAATTGCTGATTTTGTGAAAATTGTGAAGTTCTTTATTTTATCTGGTGAAAATTTCTGTATTGTTGGAACTGTCGACTACTTTCTGTTGATAATTTTTTCTAATTAGCCAATATGAGGGAAATGATATCTGGTGTCTGTTAACTTCATTTAGACTCTGGGTGTTGTGTTTTCAGTTTTTTTAGTAAGAATGCTAATGTGATCTTCATTTTCGATTTCTTTATTGTTGACAAAAATGGTTTTAATCCTTTCTCCAGGTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAGGTATTGGAAGTGGAATTTCTTTTTTACCAAGATACTTTGCCAGGATAGTGGGCTATAGTGGCTAATTGATCCTTCATTGGCTTAGCAGCATGAGTTTTATGTGCTTATGTACTTGTATGTTGTTTCTAGCACCTGGCTGCTCAGCCAATCAAGTGCTACACATTTTTCCTGTACTCGTTGTTCTTATCAGTGGTGCTTGTTATTTTGTTGCAGAGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTG</genome_strand>
        <mrna_strand>GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG................................................................................................CCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG.....................................................................................................................................................................................................................AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543857" ref_strand="+" ref_description="SGN-E543857 [TUS-65-O6]">
      <seq>ccttattgagatggagttgtaattaactaatggtatcagggtctatgctcagctgacatctcagataaaaactagctcatttgatagatgccaagatcttgatatggattacataaatacttcacatccaaattttattggtgggactaaagctcatgagatggcattacagcaggtcaagtcctctaggattgctgcaccgaatccgaggcagaaagatggcgtagatttagaaaaagcaccaacctctgaaagaagtctaaaatcacgtgctatacttgccagatcagttggtggttttgtccctgatcaggttgttcggcctgctccagaagttgagaaaactacagcatcaggatcaaatgttggttcaagttggggaatatcatcaatatttggtggctcggacaatcgtgcatctgtaaaagacaatttcattaacaagccattcagtgatactgcactgagcatggatcatgctttctcaatgatccacttgagagagcccccaagtgtcttgaggccttcagaaactcattcagatcaggaaactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="73245" stop="71083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72945" g_stop="72930" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72743" i_length="187">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72742" g_stop="72656" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="103" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72655" i_stop="72555" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72554" g_stop="72441" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="217" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72440" i_stop="72307" i_length="134">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72306" g_stop="72211" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="313" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72210" i_stop="72075" i_length="136">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72074" g_stop="72032" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="356" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72031" i_stop="71679" i_length="353">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71678" g_stop="71530" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="505" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71433" g_stop="71383" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="556" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E543857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72945" e_stop="72930"/>
          <exon e_start="72742" e_stop="72656"/>
          <exon e_start="72554" e_stop="72441"/>
          <exon e_start="72306" e_stop="72211"/>
          <exon e_start="72074" e_stop="72032"/>
          <exon e_start="71678" e_stop="71530"/>
          <exon e_start="71433" e_stop="71383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTGAGATGGAGGTATGTCAAAATGTTGGGTGTTTTGTTTGGTTTTGCTTATACCTAACACAATAAACACATTTGGTGTTTAAGTTTATTGAATTGATTGATAAGTGTCAACTATTTGTGAAATATTATGCTAGAATTTCAATCTGTTCTTTCTGTACATATCACAATCAAATTTTACGATTGTTGTATTGCCCTGCAGTTGTAATTAACTAATGGTATCAGGGTCTATGCTCAGCTGACATCTCAGATAAAAACTAGCTCATTTGATAGATGCCAAGATCTTGATGTAAAAGTTCGTGAATTGCTTTAGCAAATCACTAAAATTCTTAGGACTCTTTTGCTGTTAAAGTTTTTATATTGTTCAACTTAATTGTTTTTCTGTTGCAGATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCTGTTCGTATACTTTTTGCAATTGGTCTTGCAAATTATATCATACTGACCTTATCAAAAGAAAAAAATATATCATACTGATATTTTAATTTTAATTTTTTTTGCTTATTGCTATTCAGGATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAGGTTGGCCTTTTCTGCATCATCTCCAAGTTTAGTTTCGTCATCGTCTCCCTGATCAACATTGCACAGCTTTCAAATTTCAAGTGCAAGGCACTGAAGTTAATCACACTGATTAATGTTCTTTTTTGACTGGGAACAGGTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAGGTGTGTTTCCATCTGGCGATACATGATGTGTTCATTTATGCCAGACGTTTGTTAATTGGAAGTACATAATTAATTGGTTATTTTTTGAGAATTGGTAGCAAAAATAACTATTAAATGAGTTATTAGTTATTTTCACAAGTTGAATATTGTATATAAGGATTAGCCATTTGCCAAATGCGGCTTTATGAAGAAGTCCTTACTTAAGTACCTTGTGGTACACTTAAGCTCAAAAACTCCATGAACTTTTATGTTGCTTGTATTATGAATTGATGTCCTTCTCCTTATAATCTTTAGAAAATATTTTGTTTGCTCGGTGTTATTGCCAAGCCATTGCTGATATATCTCTTCATTAGGATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAGGTATCAGTTTTGAAGGCCCTCTCTGCTGTATGATTACTTTATAGATTAGGTTGGTGATTAAACCAAACATGACATCTCTATGTGTTCTGCTTGAAGCCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATT</genome_strand>
        <mrna_strand>CCTTATTGAGATGGAG...........................................................................................................................................................................................TTGTAATTAACTAATGGTATCAGGGTCTATGCTCAGCTGACATCTCAGATAAAAACTAGCTCATTTGATAGATGCCAAGATCTTGAT.....................................................................................................ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAA......................................................................................................................................GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAG........................................................................................................................................GTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAG.................................................................................................................................................................................................................................................................................................................................................................GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG................................................................................................CCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379531" ref_strand="+" ref_description="SGN-E379531 [TUS-3-K4]">
      <seq>caaatctgcattatttgtgccagaggtcccttttgaagttctcatccgaaggcaaatagcacgattaatggacccgagttttcaatgtgcacgatttatatatgatgagctggttaaaatgagccatcgttgtatggtcaatgagttgcaacgttttccaattttgagaaagcgcatggatgaggttattggaaattttttgcgtgaaggactgggaccttcagaagtaatgattggacaccttattgagatggagatggattacataaatacttcacatccaaattttattggtgggactaaagctcatgagatggcattacagcaggtcaagtcctctaggattgctgcaccgaatccgaggcagaaagtaaaattttcatttgctgatggcgtagatttagaaaaagcaccaacctctgaaagaagtctaaaatcacgtgctatacttgccagatcagttggtggttttgtccctgatcaggttgttcggcctgctccagaagttgagaaaactacagcatcaggatcaaatgttggttcaagttggggaatatcatcaatatttggtggctcggacaatcgtgcatctgtaaaagacaatttcattaacaagccattcagtgatactgcactgagcatggatcatgctttctncatgatccacttgagagacccccccagtgtcttgaagccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="73689" stop="71231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73389" g_stop="73365" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73364" i_stop="73241" i_length="124">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73240" g_stop="73148" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="118" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73147" i_stop="73068" i_length="80">
            <donor d_prob="0.161" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73067" g_stop="72930" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="256" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72929" i_stop="72555" i_length="375">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72554" g_stop="72423" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="388" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72422" i_stop="72307" i_length="116">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72306" g_stop="72211" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="484" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72210" i_stop="72075" i_length="136">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72074" g_stop="72032" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="527" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="72031" i_stop="71679" i_length="353">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71678" g_stop="71530" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="676" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.751" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71433" g_stop="71411" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="699" r_length="23" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E379531" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73389" e_stop="73365"/>
          <exon e_start="73240" e_stop="73148"/>
          <exon e_start="73067" e_stop="72930"/>
          <exon e_start="72554" e_stop="72423"/>
          <exon e_start="72306" e_stop="72211"/>
          <exon e_start="72074" e_stop="72032"/>
          <exon e_start="71678" e_stop="71530"/>
          <exon e_start="71433" e_stop="71411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTGCATTATTTGTGCCAGAGGTAACTCCAAAGGATTTAACCTGTTCATTGCTTTTGAGCAAATATTTCAACGGTTTATTGAATAATTCCTGTAGTATTTATGACAATTGGTTGGTCGCATCGTAATTATTGTGTAAATATGCAGGTCCCTTTTGAAGTTCTCATCCGAAGGCAAATAGCACGATTAATGGACCCGAGTTTTCAATGTGCACGATTTATATATGATGAGCTGGTTAAAGTAGGCCAATGTTGACAACCTTCTTATTCTTGTTATGCATTTTTATAATTGCTGTTCTAACTTGAATGATTTCTTCGTAGATGAGCCATCGTTGTATGGTCAATGAGTTGCAACGTTTTCCAATTTTGAGAAAGCGCATGGATGAGGTTATTGGAAATTTTTTGCGTGAAGGACTGGGACCTTCAGAAGTAATGATTGGACACCTTATTGAGATGGAGGTATGTCAAAATGTTGGGTGTTTTGTTTGGTTTTGCTTATACCTAACACAATAAACACATTTGGTGTTTAAGTTTATTGAATTGATTGATAAGTGTCAACTATTTGTGAAATATTATGCTAGAATTTCAATCTGTTCTTTCTGTACATATCACAATCAAATTTTACGATTGTTGTATTGCCCTGCAGTTGTAATTAACTAATGGTATCAGGGTCTATGCTCAGCTGACATCTCAGATAAAAACTAGCTCATTTGATAGATGCCAAGATCTTGATGTAAAAGTTCGTGAATTGCTTTAGCAAATCACTAAAATTCTTAGGACTCTTTTGCTGTTAAAGTTTTTATATTGTTCAACTTAATTGTTTTTCTGTTGCAGATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCTGTTCGTATACTTTTTGCAATTGGTCTTGCAAATTATATCATACTGACCTTATCAAAAGAAAAAAATATATCATACTGATATTTTAATTTTAATTTTTTTTGCTTATTGCTATTCAGGATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAGGTTGGCCTTTTCTGCATCATCTCCAAGTTTAGTTTCGTCATCGTCTCCCTGATCAACATTGCACAGCTTTCAAATTTCAAGTGCAAGGCACTGAAGTTAATCACACTGATTAATGTTCTTTTTTGACTGGGAACAGGTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAGGTGTGTTTCCATCTGGCGATACATGATGTGTTCATTTATGCCAGACGTTTGTTAATTGGAAGTACATAATTAATTGGTTATTTTTTGAGAATTGGTAGCAAAAATAACTATTAAATGAGTTATTAGTTATTTTCACAAGTTGAATATTGTATATAAGGATTAGCCATTTGCCAAATGCGGCTTTATGAAGAAGTCCTTACTTAAGTACCTTGTGGTACACTTAAGCTCAAAAACTCCATGAACTTTTATGTTGCTTGTATTATGAATTGATGTCCTTCTCCTTATAATCTTTAGAAAATATTTTGTTTGCTCGGTGTTATTGCCAAGCCATTGCTGATATATCTCTTCATTAGGATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAGGTATCAGTTTTGAAGGCCCTCTCTGCTGTATGATTACTTTATAGATTAGGTTGGTGATTAAACCAAACATGACATCTCTATGTGTTCTGCTTGAAGCCCCCAAGTGTCTTGAGGCCTTC</genome_strand>
        <mrna_strand>CAAATCTGCATTATTTGTGCCAGAG............................................................................................................................GTCCCTTTTGAAGTTCTCATCCGAAGGCAAATAGCACGATTAATGGACCCGAGTTTTCAATGTGCACGATTTATATATGATGAGCTGGTTAAA................................................................................ATGAGCCATCGTTGTATGGTCAATGAGTTGCAACGTTTTCCAATTTTGAGAAAGCGCATGGATGAGGTTATTGGAAATTTTTTGCGTGAAGGACTGGGACCTTCAGAAGTAATGATTGGACACCTTATTGAGATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCT....................................................................................................................GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAG........................................................................................................................................GTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAG.................................................................................................................................................................................................................................................................................................................................................................GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTNCATGATCCACTTGAGAGAC................................................................................................CCCCCCAGTGTCTTGAAGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305841" ref_strand="+" ref_description="SGN-E305841 [cLEX-14-D12]">
      <seq>cttattgagatggagttgtaattaactaatggtatcagggtctatgctcagctgacatctcagataaaaactagctcatttgatagatgccaagatcttgatatggattacataaatacttcacatccaaattttattggtgggactaaagctcatgagatggcattacagcaggtcaagtcctctaggattgctgcaccgaatccgaggcagaaagatggcgtagatttagaaaaagcaccaacctctgaaagaagtctaaaatcacgtgctatacttgccagatcagttggtggttttgtccctgatcaggttgttcggcctgctccagaagttgagaaaactacagcatcaggatcaaatgttggttcaagttggggaatatcatcaatatttggtggctcggacaatcgtgcatctgtaaaagacaatttcattaacaagccattcagtgatactgcactgagcatggatcatgctttctcaatgatccacttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="73047" stop="71234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72944" g_stop="72930" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72743" i_length="187">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72742" g_stop="72656" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="102" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72655" i_stop="72555" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72554" g_stop="72441" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="216" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72440" i_stop="72307" i_length="134">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72306" g_stop="72211" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="312" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72210" i_stop="72075" i_length="136">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72074" g_stop="72032" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="355" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72031" i_stop="71679" i_length="353">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71678" g_stop="71534" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="500" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E305841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72944" e_stop="72930"/>
          <exon e_start="72742" e_stop="72656"/>
          <exon e_start="72554" e_stop="72441"/>
          <exon e_start="72306" e_stop="72211"/>
          <exon e_start="72074" e_stop="72032"/>
          <exon e_start="71678" e_stop="71534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTGAGATGGAGGTATGTCAAAATGTTGGGTGTTTTGTTTGGTTTTGCTTATACCTAACACAATAAACACATTTGGTGTTTAAGTTTATTGAATTGATTGATAAGTGTCAACTATTTGTGAAATATTATGCTAGAATTTCAATCTGTTCTTTCTGTACATATCACAATCAAATTTTACGATTGTTGTATTGCCCTGCAGTTGTAATTAACTAATGGTATCAGGGTCTATGCTCAGCTGACATCTCAGATAAAAACTAGCTCATTTGATAGATGCCAAGATCTTGATGTAAAAGTTCGTGAATTGCTTTAGCAAATCACTAAAATTCTTAGGACTCTTTTGCTGTTAAAGTTTTTATATTGTTCAACTTAATTGTTTTTCTGTTGCAGATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCTGTTCGTATACTTTTTGCAATTGGTCTTGCAAATTATATCATACTGACCTTATCAAAAGAAAAAAATATATCATACTGATATTTTAATTTTAATTTTTTTTGCTTATTGCTATTCAGGATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAGGTTGGCCTTTTCTGCATCATCTCCAAGTTTAGTTTCGTCATCGTCTCCCTGATCAACATTGCACAGCTTTCAAATTTCAAGTGCAAGGCACTGAAGTTAATCACACTGATTAATGTTCTTTTTTGACTGGGAACAGGTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAGGTGTGTTTCCATCTGGCGATACATGATGTGTTCATTTATGCCAGACGTTTGTTAATTGGAAGTACATAATTAATTGGTTATTTTTTGAGAATTGGTAGCAAAAATAACTATTAAATGAGTTATTAGTTATTTTCACAAGTTGAATATTGTATATAAGGATTAGCCATTTGCCAAATGCGGCTTTATGAAGAAGTCCTTACTTAAGTACCTTGTGGTACACTTAAGCTCAAAAACTCCATGAACTTTTATGTTGCTTGTATTATGAATTGATGTCCTTCTCCTTATAATCTTTAGAAAATATTTTGTTTGCTCGGTGTTATTGCCAAGCCATTGCTGATATATCTCTTCATTAGGATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAG</genome_strand>
        <mrna_strand>CTTATTGAGATGGAG...........................................................................................................................................................................................TTGTAATTAACTAATGGTATCAGGGTCTATGCTCAGCTGACATCTCAGATAAAAACTAGCTCATTTGATAGATGCCAAGATCTTGAT.....................................................................................................ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAA......................................................................................................................................GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAG........................................................................................................................................GTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAG.................................................................................................................................................................................................................................................................................................................................................................GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208150" ref_strand="+" ref_description="SGN-E208150 [cLEC-37-A9]">
      <seq>caaatctgcattatttgtgccagaggtcccttttgaagttctcatccgaaggcaaatagcacgattaatggacccgagttttcaatgtgcacgatttatatatgatgagctggttaaaatgagccatcgctgtatggtcaatgagttgcaacgttttccaattttgagaaagcgcatggatgaggttattggaaattttttgcgtgaaggactgggaccttcacaagtaatgattggacaccttattgagatggagatggattacataaatacttcacatccaaattttattggtgggactaaagctcatgagatggcattacagcaggtcaagtcctctaggattgctgcaccgaatccgaggcagaaagtaaaattttcatttgctgatggcgtagatttagaaaaagcaccaacctctgaaagaagtctaaaatcacgtgctatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="73689" stop="71944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73389" g_stop="73365" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73364" i_stop="73241" i_length="124">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73240" g_stop="73148" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="118" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73147" i_stop="73068" i_length="80">
            <donor d_prob="0.161" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73067" g_stop="72930" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="256" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72929" i_stop="72555" i_length="375">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72554" g_stop="72423" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="388" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72422" i_stop="72307" i_length="116">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72306" g_stop="72244" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="451" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E208150" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73389" e_stop="73365"/>
          <exon e_start="73240" e_stop="73148"/>
          <exon e_start="73067" e_stop="72930"/>
          <exon e_start="72554" e_stop="72423"/>
          <exon e_start="72306" e_stop="72244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTGCATTATTTGTGCCAGAGGTAACTCCAAAGGATTTAACCTGTTCATTGCTTTTGAGCAAATATTTCAACGGTTTATTGAATAATTCCTGTAGTATTTATGACAATTGGTTGGTCGCATCGTAATTATTGTGTAAATATGCAGGTCCCTTTTGAAGTTCTCATCCGAAGGCAAATAGCACGATTAATGGACCCGAGTTTTCAATGTGCACGATTTATATATGATGAGCTGGTTAAAGTAGGCCAATGTTGACAACCTTCTTATTCTTGTTATGCATTTTTATAATTGCTGTTCTAACTTGAATGATTTCTTCGTAGATGAGCCATCGTTGTATGGTCAATGAGTTGCAACGTTTTCCAATTTTGAGAAAGCGCATGGATGAGGTTATTGGAAATTTTTTGCGTGAAGGACTGGGACCTTCAGAAGTAATGATTGGACACCTTATTGAGATGGAGGTATGTCAAAATGTTGGGTGTTTTGTTTGGTTTTGCTTATACCTAACACAATAAACACATTTGGTGTTTAAGTTTATTGAATTGATTGATAAGTGTCAACTATTTGTGAAATATTATGCTAGAATTTCAATCTGTTCTTTCTGTACATATCACAATCAAATTTTACGATTGTTGTATTGCCCTGCAGTTGTAATTAACTAATGGTATCAGGGTCTATGCTCAGCTGACATCTCAGATAAAAACTAGCTCATTTGATAGATGCCAAGATCTTGATGTAAAAGTTCGTGAATTGCTTTAGCAAATCACTAAAATTCTTAGGACTCTTTTGCTGTTAAAGTTTTTATATTGTTCAACTTAATTGTTTTTCTGTTGCAGATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCTGTTCGTATACTTTTTGCAATTGGTCTTGCAAATTATATCATACTGACCTTATCAAAAGAAAAAAATATATCATACTGATATTTTAATTTTAATTTTTTTTGCTTATTGCTATTCAGGATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTT</genome_strand>
        <mrna_strand>CAAATCTGCATTATTTGTGCCAGAG............................................................................................................................GTCCCTTTTGAAGTTCTCATCCGAAGGCAAATAGCACGATTAATGGACCCGAGTTTTCAATGTGCACGATTTATATATGATGAGCTGGTTAAA................................................................................ATGAGCCATCGCTGTATGGTCAATGAGTTGCAACGTTTTCCAATTTTGAGAAAGCGCATGGATGAGGTTATTGGAAATTTTTTGCGTGAAGGACTGGGACCTTCACAAGTAATGATTGGACACCTTATTGAGATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCT....................................................................................................................GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210718" ref_strand="+" ref_description="SGN-E210718 [cLEC-68-L24]">
      <seq>caattcagacttagccaactcagatgctcttcagattgctgggaatgctgaccctgatggttatcgaactattggcgtcatcacaaagttggacatcatggataggggtactgatgctcgtaactttttacttggaaaagtgattccccttcgccttggttatgttggaatagtgaatcgtaatcaggaggatattacgatgaatcggagtattaaggatgcacttgtagctgaggagaagttcttccgcaaccgtcctgtatatagtgatcttgctgatcgctgtggtgtacctcaattggctaaaaagttgaaccagattttggtgcaacacatcaaaaaactccttccaggattgaaatcacgcattagtgctggacttgtgtctgtcgcaaaggagcatgctatctatggggagatcaccgagtcaaaggctggtatgggtgctctccttctgaacattctttccaagtacagtgaagcattctcttcaatgatagaaggcaaaaatgaagaaatgtcaacttctgagctttctggtggagcaaggattcattacatttttcagaacatatttgtgaaaagtttggaggaaattgatccttgtgaagatttaagcgatgatgacctccgaactgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="78664" stop="73108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78364" g_stop="78306" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78305" i_stop="78225" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78224" g_stop="78196" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="88" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78195" i_stop="78103" i_length="93">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78102" g_stop="78001" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="190" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78000" i_stop="75745" i_length="2256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75744" g_stop="75676" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="259" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75675" i_stop="75592" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75591" g_stop="75532" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="319" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75531" i_stop="74660" i_length="872">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74659" g_stop="74546" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="433" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74545" i_stop="74363" i_length="183">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74362" g_stop="74314" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="482" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74313" i_stop="74150" i_length="164">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74149" g_stop="74040" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="592" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74039" i_stop="73458" i_length="582">
            <donor d_prob="0.729" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="73457" g_stop="73408" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="642" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E210718" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78364" e_stop="78306"/>
          <exon e_start="78224" e_stop="78196"/>
          <exon e_start="78102" e_stop="78001"/>
          <exon e_start="75744" e_stop="75676"/>
          <exon e_start="75591" e_stop="75532"/>
          <exon e_start="74659" e_stop="74546"/>
          <exon e_start="74362" e_stop="74314"/>
          <exon e_start="74149" e_stop="74040"/>
          <exon e_start="73457" e_stop="73408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCAGACTTAGCCAACTCAGATGCTCTTCAGATTGCTGGGAATGCTGACCCTGATGGTATGTTGCAACAATATATTCTATGCCGGGGAGTTTACTTGCTTTTTAGGTGCTTTCTTACATGAGAGATTCTTCTTGCAGGTTATCGAACTATTGGCGTCATCACAAAGGTCAGTGTGAAAGGACATCAATTTCATCCTTATGTTGATAATATTATTTCTCCGAATTGTTTTGAAGTGGTTGTGTTTCCATTGTTTTCACAGTTGGACATCATGGATAGGGGTACTGATGCTCGTAACTTTTTACTTGGAAAAGTGATTCCCCTTCGCCTTGGTTATGTTGGAATAGTGAATCGTAATCAGGAGGTAATACATCCATTTTTTCTTTTTACCTTTTCTTTTACGGAAAATGGTTTAAAATACCCTTGAAGTATTGGAAATGGTATAAAATTACTCTTCATCCACCTATTGGCTCCAAAATGCCCTTGTCATCCACTTTTGAGTTCAAAATTGACCACTTATTTAATGATTTTAACTATTTAAATATTTTTAAAATACTTGATGTTCAACTATTGGTTATAATTTGATTTATTTGTATTATTTATAAACCAACCCACTACCCACCCATTACTAACTAAACCCCACCCAATTAATAATCCAACTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTAATGAAAATGACATTCAAAATTATTCGAGTCCAAATCGAAGCCCCAATTAAATTTATGTTGAGCCGCTTATTTAGGAGGATACTTTCAATTTGATTCTCTTTCAAGATTGAATTAGAAAGTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTAATTCATGCACTTTTTTAAAATATAATTTTATAAATATTTATGATTTGTTTGAAAACCTTTTATATATTATTTTGAAAAAAAGTTACCTATAAAGTAACATCAGATAATTGAGACGTAAGAATAATTAAGATGAACATAGTCAAACTTTTAAGTTTATCGGTAATTTAGACACTTGAATGTATGATAATTTATTCCTATAGATATTTTCATCTCAAATTTTTAAAAACACTCAATTGGCAGTAGTTTTTTTGTTGTTGCATTAATAATGTGAGTGATTTATTAATTTAGAGGGTTTAATTAGTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAATTATAACAAATAGTTGAGCGCCACGTATTTAAAAAAATATTTAAATAGTTTAAATGTAAAACCGTTAAATAAGTGGTCAATTTCGAACAAAAAGGTGGATGACAAGGTTATTTTGGACCAAATAGGTAGGTGAGAAGGGTATTTTGGAGCCAATAGGTGGATGGAGAGTAATTTTGTACCATGTCCAATACTTTGAGGGTATTTTAGACCCTTTTTCGTTTCTTTTAAGAGGTAATACATCTAGCTACACATCTGGTGGAGGATATCGTTTCTCACGAGTTTTTGTTTATTTCTTGAGTTGGGCTCATTTGAATCATATGTATGTTTTGGAGTTGTATATGAGGTTACCATGTTTCTTTTAAAAAATCATTTATTCTTCGTAGGTATGTTATGAAGGGTGTAGAACCAAAAATGAAAAATTGTCCACTTTCTTCATGGATATCTACAGTCTTTAGGTCTCTGAGAGGCACCTCTACCAAGTTCTCTTTTCTTGGGAGTGTTTTGTTTATTTATTTCTATTTTATTCTGACTAAATTTTAACTGATACCTTTAGACATATGTGGTTTTGATCATTGTTGTGGTCATCTTGCAACAACTTCTTTCGGACAAGAAATTCTGTTGCGCGGGCAATACTTATTTTTCAAATACTGTGCGATAGATTGCATATTTACCTTCATGTCTGGATAATGGGATACATTTCAGGTTGTTTCCCTCTAAATATCTTGGGTGCTAAATTGGTATTTGGCTGCTAACTTTTTATTTGTTGTGTGATTTTCTTTTTAGCACACAAAGTAATCTTTATTGATACCCCAAGACAATGTTTTATTTTGAATCCTTATACATTACAATTATTTTAAGGATAATTTAAAACAGTAATAGGGCACCATAACCAAAATATACAAGGAAGTATCTACAATCAAGTCTATGATGGGTCAATAGAGGTAATAAACTGTTCAAGCTTTATGATTCCTCTCTGCTCTCTTTCTTTTATTGCCAAAAGAGGAGTCTGAGATATTATGGCACCCTATAACAGTTCCAAAGGACAGATGGATGATAAGAGAAAGTTGTAACCATTGAGAACCAGAACGAGTGTCAAGATCCACTGCAACTTTATAGTAGTGAAAGAACTTGGAAATCTCTAAAATTGTATTCATCTACGGAAAATCTTAGCAGCCAATGCATATTATACAACAAACCTACTTGTGTACTGCTTGTAGTAGTCTGGATTTATTAGTTTATCCAAGTACAAGGTAAGGATTTAGTTTATCAGAGAGAAAACCATTGGGTAACAAGATAACAGTGTGCTACATATGAGCAACAGTATCTGTGTGCATAGATTCAGAAATATACGTATATTGCTTTGTAAGTCTTTAATCCTATAGCTCGATTATGCAAAACAGGATATTACGATGAATCGGAGTATTAAGGATGCACTTGTAGCTGAGGAGAAGTTCTTCCGCAACCGTCCTGTATGTTTTCTACCATCTCTTATGTAGTTGATTTCATGTTTACATCCGTGAACAATCTTCTGCTTTATCTATTTTTTCTCGAAGGTATATAGTGATCTTGCTGATCGCTGTGGTGTACCTCAATTGGCTAAAAAGTTGAACCAGGTAATCTATGCTGGTCAAAGTAACAGTGATTCTTCTTTTATTGGGTTGCCACATTGCTCACATTACATCCTTGTAGGACTAAATATTTATAAAAAATGTGAACCATAATAATGTCAAACATTATATTTATTATTTTCCTGTCATTATAGAAGTATCTCCAAATCAATTAATAAATTATAAGCTTCATCCTCTACAGTTATTTTTGCATTTTCAAATGTAATTGACACGTTGAATTCGAAAAAAAAAGCGCTTTGCTCATGTTTTGTGTTATACTTAGACATGCTTACCCTGTCACTGGTGGTTGTAATTTTTTTTTTTTTTAAACACAGTGATCATGTTATGGCACACGAGAAACACAATATGAACATTTGTACATGTAGTGGCCTGTGTTTTACCTTTCTTTTTTTGGTTTCCAGCATCTGTGATCAGGGATTTACCAAGCAGTTTATTTTTTCTTGAAAATAAACATCATAATCTGGACACTCTTTCTGACAAATTCGATGGTCATGTTCTCTATGTGTCAATCTGGTCTCTAATGCATACCTTGCTGTTTTTTGGATGAGAGTAATATCTTCCTTGTTATTTTCTTGTGTATGGGGATATTTTCTCTAATGACATGTTAAGGCTGTCTTTCCTGTTTACTGTTGCACCTATTTTAACTTGCATTTGTGCAACAGATACCTGTTCTGCTCTTAGTGTTTTCCACATCAATTGGATGATTGGCTATCACCCACCTTCAGCCCAATCCCATTGTCCTGTTCCAAAGGAAATGCAAATTTTCCAAGCGTGCTGTTTGCTTTCCAGTTGCGGATGGGACATCTTGTTGCTTTGGAATCAGATACTACTAACATGAATTTTATTGTTTAATGCAGATTTTGGTGCAACACATCAAAAAACTCCTTCCAGGATTGAAATCACGCATTAGTGCTGGACTTGTGTCTGTCGCAAAGGAGCATGCTAGCTATGGGGAGATCACCGAGTCAAAGGTAACTTCTTTTGTGTTCCCCATGCTTTACTAAGCACTGGACTGAAGTTCTGGGGATATTTTTGTCATAGTACTACCAATTGTTGAGCTCTGGAGGGTTTCTTTCTGCTAGGTTTATTGTAGTTTCTCAGCTAATGTTTTTGAACTATTTATTGACATCATTGTATTAATCCGCTGAATCTAGGCTGGTATGGGTGCTCTCCTTCTGAACATTCTTTCCAAGTACAGTGAAGGTAATGTGGCCTAAACCTTGCAATATTTGATAGTAGTCCTCTACTGGATTTGATCTCCTATATCTAATGTTGCTTTCTAGTATAAATTTCATATTAATTGACCATTTACACATCCTAACCTTATTACCAGTTTGTATTTTTTGTTTTCTTTGGGTCGAGAGCAGCATTCTCTTCAATGATAGAAGGCAAAAATGAAGAAATGTCAACTTCTGAGCTTTCTGGTGGAGCAAGGATTCATTACATTTTTCAGAACATATTTGTGAAAAGTTTGGAGGTCTACTTCTTTTCGTATTAACTTTTTTTTATGGGTAAAAGTTTCTGAAGTTTCATATTGCAATGCCTACTTTATTTTTTTATTGCTTGGAGAACTGAAATTCATCTGTAGACTTGCTCATGTTTTCAGATAAATGATACTGATGCTATTTTGTCAATAGATAGCTAGTATGTATGCTTTCATTGGTATGGTCAACTCTGAATGGCTTATAATGCTTTTATTGGGCATTAACTTTTTTATCAGTAAGGTCTTCATAAATTGTTGCTAAGGTTGTGGTGCACATGTACATAAGCCATTCATCTATTGTCCTGGTTTTCATCCACTTACATAGTGGCATAATTGAAGTCTATCTTCCATTTTGAATAGTCTTTTATTGACTAGCTCCTTCCGTCGATAAACCACAATTTTTTACAATAAGGTTTCACATACAAGTATTTTAAATCTTCAAGGCTGTAAAAATTGTGAATGACAGACAAAAGAACTTTTCAGTAACTTTGCATAATTAGTATGTTGATGTGTATAATTGGAATGTATAACCTAGGTTTAGTAGCTTACCAAGTCAGATTTCTCTTTCTCCTGCAGGAAGTTGATCCTTGTGAAGATTTAAGCGATGATGACATCCGAACTGCCAT</genome_strand>
        <mrna_strand>CAATTCAGACTTAGCCAACTCAGATGCTCTTCAGATTGCTGGGAATGCTGACCCTGATG.................................................................................GTTATCGAACTATTGGCGTCATCACAAAG.............................................................................................TTGGACATCATGGATAGGGGTACTGATGCTCGTAACTTTTTACTTGGAAAAGTGATTCCCCTTCGCCTTGGTTATGTTGGAATAGTGAATCGTAATCAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTACGATGAATCGGAGTATTAAGGATGCACTTGTAGCTGAGGAGAAGTTCTTCCGCAACCGTCCT....................................................................................GTATATAGTGATCTTGCTGATCGCTGTGGTGTACCTCAATTGGCTAAAAAGTTGAACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGTGCAACACATCAAAAAACTCCTTCCAGGATTGAAATCACGCATTAGTGCTGGACTTGTGTCTGTCGCAAAGGAGCATGCTATCTATGGGGAGATCACCGAGTCAAAG.......................................................................................................................................................................................GCTGGTATGGGTGCTCTCCTTCTGAACATTCTTTCCAAGTACAGTGAAG....................................................................................................................................................................CATTCTCTTCAATGATAGAAGGCAAAAATGAAGAAATGTCAACTTCTGAGCTTTCTGGTGGAGCAAGGATTCATTACATTTTTCAGAACATATTTGTGAAAAGTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGATCCTTGTGAAGATTTAAGCGATGATGACCTCCGAACTGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281074" ref_strand="+" ref_description="SGN-E281074 [cLER-7-G13]">
      <seq>ttgaatccttatacattacaattattttaaggataatttaaaacagtaatagggcaccataaccaaaatatacaaggaagtatctacaatcaagtctatgatgggtcaatagaggatattacgatgaatcggagtattaaggatgcacttgtagctgaggagaagttcttccgcaaccgtcctgtatatagtgatcttgctgatcgctgtggtgtacctcaattggctaaaaagttgaaccagattttggtgcaacacatcaaaaaactccttccaggattgaaatcacgcattagtgctggacttgtgtctgtcgcaaaggagcatgctagctatggggagatcaccgagtcaaaggctggtatgggtgctctccttctgaacattctttccaagtacagtgaagcattctcttcaatgatagaaggcaaaaatgaagaaatgtcaacttctgagctttctggtggagcaaggattcattacatttttcagaacatatttgtgaaaagtttggagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="76617" stop="73739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76317" g_stop="76204" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76203" i_stop="75745" i_length="459">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75744" g_stop="75676" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="183" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75675" i_stop="75592" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75591" g_stop="75532" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="243" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75531" i_stop="74660" i_length="872">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74659" g_stop="74546" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="357" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74545" i_stop="74363" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74362" g_stop="74314" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="406" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74313" i_stop="74150" i_length="164">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74149" g_stop="74040" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="516" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E281074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76317" e_stop="76204"/>
          <exon e_start="75744" e_stop="75676"/>
          <exon e_start="75591" e_stop="75532"/>
          <exon e_start="74659" e_stop="74546"/>
          <exon e_start="74362" e_stop="74314"/>
          <exon e_start="74149" e_stop="74040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATCCTTATACATTACAATTATTTTAAGGATAATTTAAAACAGTAATAGGGCACCATAACCAAAATATACAAGGAAGTATCTACAATCAAGTCTATGATGGGTCAATAGAGGTAATAAACTGTTCAAGCTTTATGATTCCTCTCTGCTCTCTTTCTTTTATTGCCAAAAGAGGAGTCTGAGATATTATGGCACCCTATAACAGTTCCAAAGGACAGATGGATGATAAGAGAAAGTTGTAACCATTGAGAACCAGAACGAGTGTCAAGATCCACTGCAACTTTATAGTAGTGAAAGAACTTGGAAATCTCTAAAATTGTATTCATCTACGGAAAATCTTAGCAGCCAATGCATATTATACAACAAACCTACTTGTGTACTGCTTGTAGTAGTCTGGATTTATTAGTTTATCCAAGTACAAGGTAAGGATTTAGTTTATCAGAGAGAAAACCATTGGGTAACAAGATAACAGTGTGCTACATATGAGCAACAGTATCTGTGTGCATAGATTCAGAAATATACGTATATTGCTTTGTAAGTCTTTAATCCTATAGCTCGATTATGCAAAACAGGATATTACGATGAATCGGAGTATTAAGGATGCACTTGTAGCTGAGGAGAAGTTCTTCCGCAACCGTCCTGTATGTTTTCTACCATCTCTTATGTAGTTGATTTCATGTTTACATCCGTGAACAATCTTCTGCTTTATCTATTTTTTCTCGAAGGTATATAGTGATCTTGCTGATCGCTGTGGTGTACCTCAATTGGCTAAAAAGTTGAACCAGGTAATCTATGCTGGTCAAAGTAACAGTGATTCTTCTTTTATTGGGTTGCCACATTGCTCACATTACATCCTTGTAGGACTAAATATTTATAAAAAATGTGAACCATAATAATGTCAAACATTATATTTATTATTTTCCTGTCATTATAGAAGTATCTCCAAATCAATTAATAAATTATAAGCTTCATCCTCTACAGTTATTTTTGCATTTTCAAATGTAATTGACACGTTGAATTCGAAAAAAAAAGCGCTTTGCTCATGTTTTGTGTTATACTTAGACATGCTTACCCTGTCACTGGTGGTTGTAATTTTTTTTTTTTTTAAACACAGTGATCATGTTATGGCACACGAGAAACACAATATGAACATTTGTACATGTAGTGGCCTGTGTTTTACCTTTCTTTTTTTGGTTTCCAGCATCTGTGATCAGGGATTTACCAAGCAGTTTATTTTTTCTTGAAAATAAACATCATAATCTGGACACTCTTTCTGACAAATTCGATGGTCATGTTCTCTATGTGTCAATCTGGTCTCTAATGCATACCTTGCTGTTTTTTGGATGAGAGTAATATCTTCCTTGTTATTTTCTTGTGTATGGGGATATTTTCTCTAATGACATGTTAAGGCTGTCTTTCCTGTTTACTGTTGCACCTATTTTAACTTGCATTTGTGCAACAGATACCTGTTCTGCTCTTAGTGTTTTCCACATCAATTGGATGATTGGCTATCACCCACCTTCAGCCCAATCCCATTGTCCTGTTCCAAAGGAAATGCAAATTTTCCAAGCGTGCTGTTTGCTTTCCAGTTGCGGATGGGACATCTTGTTGCTTTGGAATCAGATACTACTAACATGAATTTTATTGTTTAATGCAGATTTTGGTGCAACACATCAAAAAACTCCTTCCAGGATTGAAATCACGCATTAGTGCTGGACTTGTGTCTGTCGCAAAGGAGCATGCTAGCTATGGGGAGATCACCGAGTCAAAGGTAACTTCTTTTGTGTTCCCCATGCTTTACTAAGCACTGGACTGAAGTTCTGGGGATATTTTTGTCATAGTACTACCAATTGTTGAGCTCTGGAGGGTTTCTTTCTGCTAGGTTTATTGTAGTTTCTCAGCTAATGTTTTTGAACTATTTATTGACATCATTGTATTAATCCGCTGAATCTAGGCTGGTATGGGTGCTCTCCTTCTGAACATTCTTTCCAAGTACAGTGAAGGTAATGTGGCCTAAACCTTGCAATATTTGATAGTAGTCCTCTACTGGATTTGATCTCCTATATCTAATGTTGCTTTCTAGTATAAATTTCATATTAATTGACCATTTACACATCCTAACCTTATTACCAGTTTGTATTTTTTGTTTTCTTTGGGTCGAGAGCAGCATTCTCTTCAATGATAGAAGGCAAAAATGAAGAAATGTCAACTTCTGAGCTTTCTGGTGGAGCAAGGATTCATTACATTTTTCAGAACATATTTGTGAAAAGTTTGGAG</genome_strand>
        <mrna_strand>TTGAATCCTTATACATTACAATTATTTTAAGGATAATTTAAAACAGTAATAGGGCACCATAACCAAAATATACAAGGAAGTATCTACAATCAAGTCTATGATGGGTCAATAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTACGATGAATCGGAGTATTAAGGATGCACTTGTAGCTGAGGAGAAGTTCTTCCGCAACCGTCCT....................................................................................GTATATAGTGATCTTGCTGATCGCTGTGGTGTACCTCAATTGGCTAAAAAGTTGAACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGTGCAACACATCAAAAAACTCCTTCCAGGATTGAAATCACGCATTAGTGCTGGACTTGTGTCTGTCGCAAAGGAGCATGCTAGCTATGGGGAGATCACCGAGTCAAAG.......................................................................................................................................................................................GCTGGTATGGGTGCTCTCCTTCTGAACATTCTTTCCAAGTACAGTGAAG....................................................................................................................................................................CATTCTCTTCAATGATAGAAGGCAAAAATGAAGAAATGTCAACTTCTGAGCTTTCTGGTGGAGCAAGGATTCATTACATTTTTCAGAACATATTTGTGAAAAGTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332073" ref_strand="+" ref_description="SGN-E332073 [cTOD-16-K17]">
      <seq>acgagtaacgattctcgctttgtttcttgggcagtaagacagatttccgctttcttttctacgcaatccatgagacttttcctcattcaagcctcaacaatccacttctagggttttactatcgtcaatctccggtgatcttgtatagtattctagaatttaacatggcggaagaaatatcaccgtcaaactctcccgatgcggcgtcggcggcgtcattgggtcattcagtaatacctatagtgaacaagctacaagatatattcgcacagctaggaagtcaatccacgattgagctgccacaggttgctgttgtagggagtcaaagtagtggcaaatcaagtgttcttgaggcgcttgtaggtcgagatttcttgcctagagggtctgatatatgtactaggcgacctcttgttctacagctccttaagcataattctgatgaggaatacggagagttcttgcaccttcctgagaaacgtttctatgattttaatgaaattcgttgggagattcaggcggagacagaaagggaagcaggaggaaataaaggtgtctcggacaagcagatacggttgaagatttactcaccaaatgttcttgatattactctagtggatttgcctggcataacaaaggtgcctgttggtgatcaaccctctgatattgaagctcggatcagaactatgatcatgtcgtatattaaggtccaagctgcttaatattggggctgtacacagccaattcagacttagccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="80322" stop="78045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80022" g_stop="79505" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79504" i_stop="78589" i_length="916">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78588" g_stop="78345" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="761" r_length="243" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E332073" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80022" e_stop="79505"/>
          <exon e_start="78588" e_stop="78345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGTAACGATTCTCGCTTTGTTTCTTGGGCAGTAAGACAGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAGGTATTTCTTGATTTGCAATAGACGAGTTAATGAATTTAAACTGGGTGTACTGCAATTTATGTAACTTTATTCATTTTCTTAGCATATATATGCTCTTTCAACTAGTTAGTTTGATTGAATAGAGCATATTATGTTTCAAGCCCTAAACTCCTAAGTACTAACTAGCCTCATATACTGAATCAGCCTATGCATTGGGTTATAACTACTGCAATATATGTACATTTATTAATCGTCATGCTAGTTATGATGATATTATTGGTTAGATGTTATAGTACACACGCCCTGACAAACTCATCTTAGATTGTTATACAGTGAATTGGCATCTCATTTGTACACTTCTCCAACTAATTAAGTGGTTACATGTAGACACTCCTTTTTTGTACAATGCTCTACCCCCATTGCAATATATACAATATCTATATGGTAAGCTGTATTCTAAAGATAGCTTGAGCAAGGAGAAACAGTAGTTCTGATTGAAAGATTATTGGCTTGTCTGTGCATCAATTATGGTTAACCAAGATTTTTTTTTTTTACAGAAGACATGGTCCTCTACAAAAGACACCCAATCCTTTATATATCCCAGACCTACATGGGTGCACCAAAAATAAAAATAAATAAGAGACTGAAGAATACTACTCAAATGCTCAAAACTCATTTCTTCCTCTTCAAAAGCCCTGTTATTTCTCTGCATCCAAATAATCCACATCAAATCCAGAGGAAAAAAGAGATAGTTATTAGACTGATCATGGATTTTGATATGGAAATATATGCATAGTAACTTCTAGTAGCAAGGATTGCATGAGGGAAGGACACTCAACATAATGCAATCTCAGTTATTGATCACGTGGTTTCTTTTCCTTGAAATTTCAGTATTTATTCTCTTTTCTAACTGCCAATCTTCCATCATTGGTATTAGGCGGAGACAGAAAGGGAAGCAGGAGGAAATAAAGGTGTCTCGGACAAGCAGATACGGTTGAAGATTTACTCACCAAATGTTCTTGATATTACTCTAGTGGATTTGCCTGGCATAACAAAGGTGCCTGTTGGTGATCAACCCTCTGATATTGAAGCTCGGATCAGAACTATGATCATGTCGTATATTAAGGTCCCAAGCTGCTTAATATTGGCTGTAACACCAGCCAATTCAGACTTAGCCAACT</genome_strand>
        <mrna_strand>ACGAGTAACGATTCTCGCTTTGTTTCTTGGGCAGTAAGACAGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGACAGAAAGGGAAGCAGGAGGAAATAAAGGTGTCTCGGACAAGCAGATACGGTTGAAGATTTACTCACCAAATGTTCTTGATATTACTCTAGTGGATTTGCCTGGCATAACAAAGGTGCCTGTTGGTGATCAACCCTCTGATATTGAAGCTCGGATCAGAACTATGATCATGTCGTATATTAAGGT-CCAAGCTGCTTAATATTGGGGCTGTACACAGCCAATTCAGACTTAGCCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316256" ref_strand="+" ref_description="SGN-E316256 [cTOA-23-N11]">
      <seq>agatttccgctttcttttctacgcaatccatgagacttttcctcattcaagcctcaacaatccacttctagggttttactatcgtcaatctccggtgatcttgtatagtattctagaatttaacatggcggaagaaatatcaccgtcaaactctcccgatgcggcgtcggcggcgtcattgggtcattcagtaatacctatagtgaacaagctacaagatatattcgcacagctaggaagtcaatccacgattgagctgccacaggttgctgttgtagggagtcaaagtagtggcaaatcaagtgttcttgaggcgcttgtaggtcgagatttcttgcctagagggtctgatatatgtactaggcgacctcttgttctacagctccttaagcataattctgatgaggaatacggagagttcttgcaccttcctgagaaacgtttctatgattttaatgaaattcgttgggagattcaggcggagacagaaagggaagcaggaggaaataaaggtgtctcggacaagcagatacggttgaagatttactcaccaaatgttcttgatattactctagtggatttgcctggcataacaaaggtgcctggtggtgatncaccctctgatattgaagctcggatcagaactatgatcatgtcgtatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="80282" stop="78104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79982" g_stop="79505" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79504" i_stop="78589" i_length="916">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78588" g_stop="78404" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="663" r_length="185" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E316256" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79982" e_stop="79505"/>
          <exon e_start="78588" e_stop="78404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAGGTATTTCTTGATTTGCAATAGACGAGTTAATGAATTTAAACTGGGTGTACTGCAATTTATGTAACTTTATTCATTTTCTTAGCATATATATGCTCTTTCAACTAGTTAGTTTGATTGAATAGAGCATATTATGTTTCAAGCCCTAAACTCCTAAGTACTAACTAGCCTCATATACTGAATCAGCCTATGCATTGGGTTATAACTACTGCAATATATGTACATTTATTAATCGTCATGCTAGTTATGATGATATTATTGGTTAGATGTTATAGTACACACGCCCTGACAAACTCATCTTAGATTGTTATACAGTGAATTGGCATCTCATTTGTACACTTCTCCAACTAATTAAGTGGTTACATGTAGACACTCCTTTTTTGTACAATGCTCTACCCCCATTGCAATATATACAATATCTATATGGTAAGCTGTATTCTAAAGATAGCTTGAGCAAGGAGAAACAGTAGTTCTGATTGAAAGATTATTGGCTTGTCTGTGCATCAATTATGGTTAACCAAGATTTTTTTTTTTTACAGAAGACATGGTCCTCTACAAAAGACACCCAATCCTTTATATATCCCAGACCTACATGGGTGCACCAAAAATAAAAATAAATAAGAGACTGAAGAATACTACTCAAATGCTCAAAACTCATTTCTTCCTCTTCAAAAGCCCTGTTATTTCTCTGCATCCAAATAATCCACATCAAATCCAGAGGAAAAAAGAGATAGTTATTAGACTGATCATGGATTTTGATATGGAAATATATGCATAGTAACTTCTAGTAGCAAGGATTGCATGAGGGAAGGACACTCAACATAATGCAATCTCAGTTATTGATCACGTGGTTTCTTTTCCTTGAAATTTCAGTATTTATTCTCTTTTCTAACTGCCAATCTTCCATCATTGGTATTAGGCGGAGACAGAAAGGGAAGCAGGAGGAAATAAAGGTGTCTCGGACAAGCAGATACGGTTGAAGATTTACTCACCAAATGTTCTTGATATTACTCTAGTGGATTTGCCTGGCATAACAAAGGTGCCTGTTGGTGATCAACCCTCTGATATTGAAGCTCGGATCAGAACTATGATCATGTCGTATAT</genome_strand>
        <mrna_strand>AGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGACAGAAAGGGAAGCAGGAGGAAATAAAGGTGTCTCGGACAAGCAGATACGGTTGAAGATTTACTCACCAAATGTTCTTGATATTACTCTAGTGGATTTGCCTGGCATAACAAAGGTGCCTGGTGGTGATNCACCCTCTGATATTGAAGCTCGGATCAGAACTATGATCATGTCGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314398" ref_strand="+" ref_description="SGN-E314398 [cTOA-21-B11]">
      <seq>taacgattctcgctttgtttcttgggcagtaagacagatttccgctttcttttctacgcaatccatgagacttttcctcattcaagcctcaacaatccacttctagggttttactatcgtcaatctccggtgatcttgtatagtattctagaatttaacatggcggaagaaatatcaccgtcaaactctcccgatgcggcgtcggcggcgtcattgggtcattcagtaatacctatagtgaacaagctacaagatatattcgcacagctaggaagtcaatccacgattgagctgccacaggttgctgttgtagggagtcaaagtagtggcaaatcaagtgttcttgaggcgcttgtaggtcgagatttcttgcctagagggtctgatatatgtactaggcgacctcttgttctacagctccttaagcataattctgatgaggaatacggagagttcttgcaccttcctgagaaacgtttctatgattttaatgaaattcgttgggagattcaggcggagacagaaagggaagcaggaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="80317" stop="78259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80017" g_stop="79505" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79504" i_stop="78589" i_length="916">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78588" g_stop="78559" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="543" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E314398" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80017" e_stop="79505"/>
          <exon e_start="78588" e_stop="78559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACGATTCTCGCTTTGTTTCTTGGGCAGTAAGACAGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAGGTATTTCTTGATTTGCAATAGACGAGTTAATGAATTTAAACTGGGTGTACTGCAATTTATGTAACTTTATTCATTTTCTTAGCATATATATGCTCTTTCAACTAGTTAGTTTGATTGAATAGAGCATATTATGTTTCAAGCCCTAAACTCCTAAGTACTAACTAGCCTCATATACTGAATCAGCCTATGCATTGGGTTATAACTACTGCAATATATGTACATTTATTAATCGTCATGCTAGTTATGATGATATTATTGGTTAGATGTTATAGTACACACGCCCTGACAAACTCATCTTAGATTGTTATACAGTGAATTGGCATCTCATTTGTACACTTCTCCAACTAATTAAGTGGTTACATGTAGACACTCCTTTTTTGTACAATGCTCTACCCCCATTGCAATATATACAATATCTATATGGTAAGCTGTATTCTAAAGATAGCTTGAGCAAGGAGAAACAGTAGTTCTGATTGAAAGATTATTGGCTTGTCTGTGCATCAATTATGGTTAACCAAGATTTTTTTTTTTTACAGAAGACATGGTCCTCTACAAAAGACACCCAATCCTTTATATATCCCAGACCTACATGGGTGCACCAAAAATAAAAATAAATAAGAGACTGAAGAATACTACTCAAATGCTCAAAACTCATTTCTTCCTCTTCAAAAGCCCTGTTATTTCTCTGCATCCAAATAATCCACATCAAATCCAGAGGAAAAAAGAGATAGTTATTAGACTGATCATGGATTTTGATATGGAAATATATGCATAGTAACTTCTAGTAGCAAGGATTGCATGAGGGAAGGACACTCAACATAATGCAATCTCAGTTATTGATCACGTGGTTTCTTTTCCTTGAAATTTCAGTATTTATTCTCTTTTCTAACTGCCAATCTTCCATCATTGGTATTAGGCGGAGACAGAAAGGGAAGCAGGAGGAAAT</genome_strand>
        <mrna_strand>TAACGATTCTCGCTTTGTTTCTTGGGCAGTAAGACAGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGACAGAAAGGGAAGCAGGAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329596" ref_strand="+" ref_description="SGN-E329596 [cTOD-3-I5]">
      <seq>gaaaacgagtaacgattctcgctttgtttcttgggcagtaagacagatttccgctttcttttctacgcaatccatgagacttttcctcattcaagcctcaacaatccacttctagggttttactatcgtcaatctccggtgatcttgtatagtattctagaatttaacatggcggaagaaatatcaccgtcaaactctcccgatgcggcgtcggcggcgtcattgggtcattcagtaatacctatagtgaacaagctacaagatatattcgcacagctaggaagtcaatccacgattgagctgccacaggttgctgttgtagggagtcaaagtagtggcaaatcaagtgttcttgaggcgcttgtaggtcgagatttcttgcctagagggtctgatatatgtactaggcgacctcttgttctacagctccttaagcataattctgatgaggaatacggagagttcttgcaccttcctgagaaacgtttctatgattttaatgaaattcgttgggagattcaggcggagacagaaagggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="80326" stop="78270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80026" g_stop="79505" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79504" i_stop="78589" i_length="916">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78588" g_stop="78570" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="541" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E329596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80026" e_stop="79505"/>
          <exon e_start="78588" e_stop="78570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACGAGTAACGATTCTCGCTTTGTTTCTTGGGCAGTAAGACAGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAGGTATTTCTTGATTTGCAATAGACGAGTTAATGAATTTAAACTGGGTGTACTGCAATTTATGTAACTTTATTCATTTTCTTAGCATATATATGCTCTTTCAACTAGTTAGTTTGATTGAATAGAGCATATTATGTTTCAAGCCCTAAACTCCTAAGTACTAACTAGCCTCATATACTGAATCAGCCTATGCATTGGGTTATAACTACTGCAATATATGTACATTTATTAATCGTCATGCTAGTTATGATGATATTATTGGTTAGATGTTATAGTACACACGCCCTGACAAACTCATCTTAGATTGTTATACAGTGAATTGGCATCTCATTTGTACACTTCTCCAACTAATTAAGTGGTTACATGTAGACACTCCTTTTTTGTACAATGCTCTACCCCCATTGCAATATATACAATATCTATATGGTAAGCTGTATTCTAAAGATAGCTTGAGCAAGGAGAAACAGTAGTTCTGATTGAAAGATTATTGGCTTGTCTGTGCATCAATTATGGTTAACCAAGATTTTTTTTTTTTACAGAAGACATGGTCCTCTACAAAAGACACCCAATCCTTTATATATCCCAGACCTACATGGGTGCACCAAAAATAAAAATAAATAAGAGACTGAAGAATACTACTCAAATGCTCAAAACTCATTTCTTCCTCTTCAAAAGCCCTGTTATTTCTCTGCATCCAAATAATCCACATCAAATCCAGAGGAAAAAAGAGATAGTTATTAGACTGATCATGGATTTTGATATGGAAATATATGCATAGTAACTTCTAGTAGCAAGGATTGCATGAGGGAAGGACACTCAACATAATGCAATCTCAGTTATTGATCACGTGGTTTCTTTTCCTTGAAATTTCAGTATTTATTCTCTTTTCTAACTGCCAATCTTCCATCATTGGTATTAGGCGGAGACAGAAAGGGAAG</genome_strand>
        <mrna_strand>GAAAACGAGTAACGATTCTCGCTTTGTTTCTTGGGCAGTAAGACAGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGACAGAAAGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327879" ref_strand="+" ref_description="SGN-E327879 [cTOC-22-M3]">
      <seq>tcctgaagatttcaccgcttctaactggtaaaagatcatgtttcgccgtcgccggagctctattggacccttcaaactgctgtgcggacaagaggattgtctcgttaaggaggaatgcctcgttaaggatgatctttttgacctcaagtcaaatgaggaatgccctgtggagaatgaacttcttgaattctcatcagaggagctgagtcactttaccggtcaatattctccggagaaccttattggagtcactgacttaggaaagctctaccgtgggaaaatgcccattgtttctaatcaaggtaaagtttataaggatgtcaccgtcaagattctggttgaggatgaaaggagatttcgtatgcaaatgcccgcttctgttaaagtcaaagttctggctgatgatgaaagggcgattctaatacatgacagcaaactgttaagattggaggatgaactaaaatttttgcaagctccaaagattaggggcaatcgcagcttaatgaaagttgttggatattgtcgcaaggagattgtgggtgttgtttatgatctaaatccacttgacaccttgcataacttgatttttcaagatgacttcaattggctgcagagggtcaagactgccattgcattagctcgcttgcttgcctatctgcatgataggaaatcatcatacctgattcgaaacttggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="84204" stop="86319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84504" g_stop="84568" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84569" i_stop="85002" i_length="434">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85003" g_stop="85388" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="451" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85389" i_stop="85496" i_length="108">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85497" g_stop="85638" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="593" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85639" i_stop="85914" i_length="276">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85915" g_stop="86019" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="698" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E327879" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84504" e_stop="84568"/>
          <exon e_start="85003" e_stop="85388"/>
          <exon e_start="85497" e_stop="85638"/>
          <exon e_start="85915" e_stop="86019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGAAGATTTCACCGCTTCTAACTGGTAAAAGATCATGTTTCGCCGTCGCCGGAGCTCTATTGGTGTGTATCTTCCATCCTTCTCTATACTTTAAGGTTATGCATTCCGATTAATTTGCTTTTTTAGGGTTTCGATGTATAGAAGTATAGTATATTTGAGTATTTGGAATTGCAATTTTTTCTGTTCTTTTTGTTTTTTGATGCTTCTGGTTGCAGAGATGCAAAATATGTGACATTTTGTGCTATAAGAGAAGAGAAATGCAGTTATGGGATTAGGTTTTCATTCAATTTTGATAGCTAACTAGGAAGAGCGATTAAAATCTGATCATCTAACCAACTCTGAAAATTATAACAATAAGAACTAAATGGCAATTAAATCAAGGATGGTGTCCTATAGATGAAACTTTTTTAAAAACTGAAAAGCTGCTTTGTCTAAGGATTGCAATTAGCTCTTTCTTTGATGTTAACACTGTGAGACCTTTCTCACTTCCTTACAGGACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAGGTTTGTGTCTATTTTGTGGTCATGCACCCTTTTTCTCTCGCTTCCTTACATTAATTAAGTGTTCTCTTAGTTTATGATTACTCAGAAAAATTGCTTTTGCTGGTGTAGGATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAGGTGCCCTTTTTACTCTCACATCTGTCTTTACTAATCTTTTATGCAGACTTCACCTGATGTATTTTCTGCTGTTAATTACATGCGCCGTAGCTATATTTGTGTTAAAACCCAGTGGCAATTGTGAATCTTTTGAGAAAAGGATCTGTAGTCATTACTCGGCCAAGTAGCTATAACCACAATAGAAACAGTGAGGAGGCATGCGATGTATCTCTTTATCCGAGAATCAGTAGGAAAGACACAGGCATCCCAATCACTTTTTTGGCTTTGCTTTTTCAGATGACTTCAATTGGCTGCAGAGGGTCAAGACTGCCATTGCATTAGCTCGCTTGCTTGCCTATCTGCATGATAGGAATCAATCATACCTGATTCGAAACTTGGCTC</genome_strand>
        <mrna_strand>TCCTGAAGATTTCACCGCTTCTAACTGGTAAAAGATCATGTTTCGCCGTCGCCGGAGCTCTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAG............................................................................................................GATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAG....................................................................................................................................................................................................................................................................................ATGACTTCAATTGGCTGCAGAGGGTCAAGACTGCCATTGCATTAGCTCGCTTGCTTGCCTATCTGCATGATAGGAAATCATCATACCTGATTCGAAACTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328120" ref_strand="+" ref_description="SGN-E328120 [cTOC-22-F10]">
      <seq>tcctgaagatttcaccgcttctaactggtaaaagatcatgtttcgccgtcgccggagctctattggacccttcaaactgctgtgcggacaagaggattgtctcgttaaggaggaatgcctcgttaaggatgatctttttgacctcaagtcaaatgaggaatgccctgtggagaatgaacttcttgaattctcatcagaggagctgagtcactttaccggtcaatattctccggagaaccttattggagtcactgacttaggaaagctctaccgtgggaaaatgcccattgtttctaatcaaggtaaagtttataaggatgtcaccgtcaagattctggttgaggatgaaaggagatttcgtatgcaaatgcccgcttctgttaaagtcaaagttctggctgatgatgaaagggcgattctaatacatgacagcaaactgttaagattggaggatgaactaaaatttttgcaagctccaaagattaggggcaatcgcagcttaatgaaagttgttggatattgtcgcaaggagattgtgggtgttgtttatgatctaaatccacttgacaccttgcataacttgatttttcaagatgacttcaattggctgcagagggtcaagactgccattgcattagctcgcttgcttgcctatctgcatgataggaatcaatcatacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="84204" stop="86303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84504" g_stop="84568" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84569" i_stop="85002" i_length="434">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85003" g_stop="85388" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="451" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85389" i_stop="85496" i_length="108">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85497" g_stop="85638" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="593" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85639" i_stop="85914" i_length="276">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85915" g_stop="86003" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="682" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E328120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84504" e_stop="84568"/>
          <exon e_start="85003" e_stop="85388"/>
          <exon e_start="85497" e_stop="85638"/>
          <exon e_start="85915" e_stop="86003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGAAGATTTCACCGCTTCTAACTGGTAAAAGATCATGTTTCGCCGTCGCCGGAGCTCTATTGGTGTGTATCTTCCATCCTTCTCTATACTTTAAGGTTATGCATTCCGATTAATTTGCTTTTTTAGGGTTTCGATGTATAGAAGTATAGTATATTTGAGTATTTGGAATTGCAATTTTTTCTGTTCTTTTTGTTTTTTGATGCTTCTGGTTGCAGAGATGCAAAATATGTGACATTTTGTGCTATAAGAGAAGAGAAATGCAGTTATGGGATTAGGTTTTCATTCAATTTTGATAGCTAACTAGGAAGAGCGATTAAAATCTGATCATCTAACCAACTCTGAAAATTATAACAATAAGAACTAAATGGCAATTAAATCAAGGATGGTGTCCTATAGATGAAACTTTTTTAAAAACTGAAAAGCTGCTTTGTCTAAGGATTGCAATTAGCTCTTTCTTTGATGTTAACACTGTGAGACCTTTCTCACTTCCTTACAGGACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAGGTTTGTGTCTATTTTGTGGTCATGCACCCTTTTTCTCTCGCTTCCTTACATTAATTAAGTGTTCTCTTAGTTTATGATTACTCAGAAAAATTGCTTTTGCTGGTGTAGGATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAGGTGCCCTTTTTACTCTCACATCTGTCTTTACTAATCTTTTATGCAGACTTCACCTGATGTATTTTCTGCTGTTAATTACATGCGCCGTAGCTATATTTGTGTTAAAACCCAGTGGCAATTGTGAATCTTTTGAGAAAAGGATCTGTAGTCATTACTCGGCCAAGTAGCTATAACCACAATAGAAACAGTGAGGAGGCATGCGATGTATCTCTTTATCCGAGAATCAGTAGGAAAGACACAGGCATCCCAATCACTTTTTTGGCTTTGCTTTTTCAGATGACTTCAATTGGCTGCAGAGGGTCAAGACTGCCATTGCATTAGCTCGCTTGCTTGCCTATCTGCATGATAGGAATCAATCATACCTG</genome_strand>
        <mrna_strand>TCCTGAAGATTTCACCGCTTCTAACTGGTAAAAGATCATGTTTCGCCGTCGCCGGAGCTCTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAG............................................................................................................GATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAG....................................................................................................................................................................................................................................................................................ATGACTTCAATTGGCTGCAGAGGGTCAAGACTGCCATTGCATTAGCTCGCTTGCTTGCCTATCTGCATGATAGGAATCAATCATACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328763" ref_strand="+" ref_description="SGN-E328763 [cTOC-23-B2]">
      <seq>tcctgaagatttcaccgcttctaactggtaaaagatcatgtttcgccgtcgccggagctctattggacccttcaaactgctgtgcggacaagaggattgtctcgttaaggaggaatgcctcgttaaggatgatctttttgacctcaagtcaaatgaggaatgccctgtggagaatgaacttcttgaattctcatcagaggagctgagtcactttaccggtcaatattctccggagaaccttattggagtcactgacttaggaaagctctaccgtgggaaaatgcccattgtttctaatcaaggtaaagtttataaggatgtcaccgtcaagattctggttgaggatgaaaggagatttcgtatgcaaatgcccgcttctgttaaagtcaaagttctggctgatgatgaaagggcgattctaatacatgacagcaaactgttaagattggaggatgaactaaaatttttgcaagctccaaagattangggcaatcgcagcttaatgaaagttgttggatattgtcgcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="84204" stop="85875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84504" g_stop="84568" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84569" i_stop="85002" i_length="434">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85003" g_stop="85388" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="451" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85389" i_stop="85496" i_length="108">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85497" g_stop="85575" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="530" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E328763" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84504" e_stop="84568"/>
          <exon e_start="85003" e_stop="85388"/>
          <exon e_start="85497" e_stop="85575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGAAGATTTCACCGCTTCTAACTGGTAAAAGATCATGTTTCGCCGTCGCCGGAGCTCTATTGGTGTGTATCTTCCATCCTTCTCTATACTTTAAGGTTATGCATTCCGATTAATTTGCTTTTTTAGGGTTTCGATGTATAGAAGTATAGTATATTTGAGTATTTGGAATTGCAATTTTTTCTGTTCTTTTTGTTTTTTGATGCTTCTGGTTGCAGAGATGCAAAATATGTGACATTTTGTGCTATAAGAGAAGAGAAATGCAGTTATGGGATTAGGTTTTCATTCAATTTTGATAGCTAACTAGGAAGAGCGATTAAAATCTGATCATCTAACCAACTCTGAAAATTATAACAATAAGAACTAAATGGCAATTAAATCAAGGATGGTGTCCTATAGATGAAACTTTTTTAAAAACTGAAAAGCTGCTTTGTCTAAGGATTGCAATTAGCTCTTTCTTTGATGTTAACACTGTGAGACCTTTCTCACTTCCTTACAGGACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAGGTTTGTGTCTATTTTGTGGTCATGCACCCTTTTTCTCTCGCTTCCTTACATTAATTAAGTGTTCTCTTAGTTTATGATTACTCAGAAAAATTGCTTTTGCTGGTGTAGGATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGG</genome_strand>
        <mrna_strand>TCCTGAAGATTTCACCGCTTCTAACTGGTAAAAGATCATGTTTCGCCGTCGCCGGAGCTCTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAG............................................................................................................GATGAACTAAAATTTTTGCAAGCTCCAAAGATTANGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373225" ref_strand="+" ref_description="SGN-E373225 [TUS-31-B23]">
      <seq>agatcatgtttcgccgtcgccggagctctattggacccttcaaactgctgtgcggacaagaggattgtctcgttaaggaggaatgcctcgttaaggatgatctttttgacctcaagtcaaatgaggaatgccctgtggagaatgaacttcttgaattctcatcagaggagctgagtcactttaccggtcaatattctccggagaaccttattggagtcactgacttaggaaagctctaccgtgggaaaatgcccattgtttctaatcaaggtaaagtttataaggatgtcaccgtcaagattctggttgaggatgaaaggagatttcgtatgcaaatgcccgcttctgttaaagtcaaagttctggctgatgatgaaagggcgattctaatacatgacagcaaactgttaagattggaggatgaactaaaatttttgcaagctccaaagattaggggcaatcgcagcttaatgaaagttgttggatattgtcgcaaggagattgtgggtgttgtttatgatctaaatccacttgacaccttgcataacttgatttttcaagatgacttcaattggctgcagagggtcaagactgccattgcattagctcgcttgcttgcctatctgcatgataggaatcaatcatacctgattcgaaacttggctccatcccacatagttgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="84236" stop="86338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84536" g_stop="84568" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84569" i_stop="85002" i_length="434">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85003" g_stop="85388" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="419" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85389" i_stop="85496" i_length="108">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85497" g_stop="85638" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="561" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85639" i_stop="85914" i_length="276">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85915" g_stop="86038" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="685" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E373225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84536" e_stop="84568"/>
          <exon e_start="85003" e_stop="85388"/>
          <exon e_start="85497" e_stop="85638"/>
          <exon e_start="85915" e_stop="86038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATGTTTCGCCGTCGCCGGAGCTCTATTGGTGTGTATCTTCCATCCTTCTCTATACTTTAAGGTTATGCATTCCGATTAATTTGCTTTTTTAGGGTTTCGATGTATAGAAGTATAGTATATTTGAGTATTTGGAATTGCAATTTTTTCTGTTCTTTTTGTTTTTTGATGCTTCTGGTTGCAGAGATGCAAAATATGTGACATTTTGTGCTATAAGAGAAGAGAAATGCAGTTATGGGATTAGGTTTTCATTCAATTTTGATAGCTAACTAGGAAGAGCGATTAAAATCTGATCATCTAACCAACTCTGAAAATTATAACAATAAGAACTAAATGGCAATTAAATCAAGGATGGTGTCCTATAGATGAAACTTTTTTAAAAACTGAAAAGCTGCTTTGTCTAAGGATTGCAATTAGCTCTTTCTTTGATGTTAACACTGTGAGACCTTTCTCACTTCCTTACAGGACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAGGTTTGTGTCTATTTTGTGGTCATGCACCCTTTTTCTCTCGCTTCCTTACATTAATTAAGTGTTCTCTTAGTTTATGATTACTCAGAAAAATTGCTTTTGCTGGTGTAGGATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAGGTGCCCTTTTTACTCTCACATCTGTCTTTACTAATCTTTTATGCAGACTTCACCTGATGTATTTTCTGCTGTTAATTACATGCGCCGTAGCTATATTTGTGTTAAAACCCAGTGGCAATTGTGAATCTTTTGAGAAAAGGATCTGTAGTCATTACTCGGCCAAGTAGCTATAACCACAATAGAAACAGTGAGGAGGCATGCGATGTATCTCTTTATCCGAGAATCAGTAGGAAAGACACAGGCATCCCAATCACTTTTTTGGCTTTGCTTTTTCAGATGACTTCAATTGGCTGCAGAGGGTCAAGACTGCCATTGCATTAGCTCGCTTGCTTGCCTATCTGCATGATAGGAATCAATCATACCTGATTCGAAACTTGGCTCCATCCCACATAGTTGTTGA</genome_strand>
        <mrna_strand>AGATCATGTTTCGCCGTCGCCGGAGCTCTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAG............................................................................................................GATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAG....................................................................................................................................................................................................................................................................................ATGACTTCAATTGGCTGCAGAGGGTCAAGACTGCCATTGCATTAGCTCGCTTGCTTGCCTATCTGCATGATAGGAATCAATCATACCTGATTCGAAACTTGGCTCCATCCCACATAGTTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373323" ref_strand="+" ref_description="SGN-E373323 [TUS-31-D23]">
      <seq>agatcatgtttcgccgtcgccggagctctattggacccttcaaactgctgtgcggacaagaggattgtctcgttaaggaggaatgcctcgttaaggatgatctttttgacctcaagtcaaatgaggaatgccctgtggagaatgaacttcttgaattctcatcataggagctgagtcactttaccggtcaatattctccggagaaccttattggagtcactgacttaggaaagctctaccgtgggaaaatgcccattgcttctaatcaaggtaaagtttataaggatgtcaccgtcaagattctggttgaggatgaaaggagatttcgtatgcaaatgcccgcttctgttaaagtcaaagttctggctgatgatgaaagggcgattctaatacatgacagcaaactgttaagattggaggatgaactaaaatttttgcaagctccaaagattaggggcaatcgcagcttaatgaaagttgttggatattgtcgcaaggagattgtgggtgttgtttatgatctaaatccacttgacaccttgcataacttgatttttcaagatgacttcaattggctgcacagggtcaagactgccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="84236" stop="86254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84536" g_stop="84568" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84569" i_stop="85002" i_length="434">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85003" g_stop="85388" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="419" r_length="386" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85389" i_stop="85496" i_length="108">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85497" g_stop="85638" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="561" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85639" i_stop="85914" i_length="276">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85915" g_stop="85954" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="601" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E373323" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84536" e_stop="84568"/>
          <exon e_start="85003" e_stop="85388"/>
          <exon e_start="85497" e_stop="85638"/>
          <exon e_start="85915" e_stop="85954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATGTTTCGCCGTCGCCGGAGCTCTATTGGTGTGTATCTTCCATCCTTCTCTATACTTTAAGGTTATGCATTCCGATTAATTTGCTTTTTTAGGGTTTCGATGTATAGAAGTATAGTATATTTGAGTATTTGGAATTGCAATTTTTTCTGTTCTTTTTGTTTTTTGATGCTTCTGGTTGCAGAGATGCAAAATATGTGACATTTTGTGCTATAAGAGAAGAGAAATGCAGTTATGGGATTAGGTTTTCATTCAATTTTGATAGCTAACTAGGAAGAGCGATTAAAATCTGATCATCTAACCAACTCTGAAAATTATAACAATAAGAACTAAATGGCAATTAAATCAAGGATGGTGTCCTATAGATGAAACTTTTTTAAAAACTGAAAAGCTGCTTTGTCTAAGGATTGCAATTAGCTCTTTCTTTGATGTTAACACTGTGAGACCTTTCTCACTTCCTTACAGGACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAGGTTTGTGTCTATTTTGTGGTCATGCACCCTTTTTCTCTCGCTTCCTTACATTAATTAAGTGTTCTCTTAGTTTATGATTACTCAGAAAAATTGCTTTTGCTGGTGTAGGATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAGGTGCCCTTTTTACTCTCACATCTGTCTTTACTAATCTTTTATGCAGACTTCACCTGATGTATTTTCTGCTGTTAATTACATGCGCCGTAGCTATATTTGTGTTAAAACCCAGTGGCAATTGTGAATCTTTTGAGAAAAGGATCTGTAGTCATTACTCGGCCAAGTAGCTATAACCACAATAGAAACAGTGAGGAGGCATGCGATGTATCTCTTTATCCGAGAATCAGTAGGAAAGACACAGGCATCCCAATCACTTTTTTGGCTTTGCTTTTTCAGATGACTTCAATTGGCTGCAGAGGGTCAAGACTGCCATTGC</genome_strand>
        <mrna_strand>AGATCATGTTTCGCCGTCGCCGGAGCTCTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCATAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGCTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAG............................................................................................................GATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAG....................................................................................................................................................................................................................................................................................ATGACTTCAATTGGCTGCACAGGGTCAAGACTGCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289305" ref_strand="+" ref_description="SGN-E289305 [cLES-18-L17]">
      <seq>agatcatgtttcgccgtcgccggagctctattggacccttcaaactgctgtgcggacaagaggattgtctcgttaaggaggaatgcctcgttaaggatgatctttttgacctcaagtcaaatgaggaatgccctgtggagaatgaacttcttgaattctcatcagaggagctgagtcactttaccggtcaatattctccggagaaccttattggagtcactgacttaggaaagctctaccgtgggaaaatgcccattgtttctaatcaaggtaaagtttataaggatgtcaccgtcaagattctggttgaggatgaaaggagatttcgtatgcaaatgcccgcttctgttaaagtcaaagttctggctgatgatgaaagggcgattctaatacatgacagcaaactgttaagattggaggatgaactaaaatttttgcaagctccaaagattaggggcaatcgcagcttaatgaaagttgttggatattgtcgcaaggagattgtgggtgttgtttatgatctaaatccacttgacaccttgcataacttgatttttcaagatgacttcaattggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="84236" stop="86232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84536" g_stop="84568" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84569" i_stop="85002" i_length="434">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85003" g_stop="85388" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="419" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85389" i_stop="85496" i_length="108">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85497" g_stop="85638" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="561" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85639" i_stop="85914" i_length="276">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85915" g_stop="85932" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="579" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E289305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84536" e_stop="84568"/>
          <exon e_start="85003" e_stop="85388"/>
          <exon e_start="85497" e_stop="85638"/>
          <exon e_start="85915" e_stop="85932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATGTTTCGCCGTCGCCGGAGCTCTATTGGTGTGTATCTTCCATCCTTCTCTATACTTTAAGGTTATGCATTCCGATTAATTTGCTTTTTTAGGGTTTCGATGTATAGAAGTATAGTATATTTGAGTATTTGGAATTGCAATTTTTTCTGTTCTTTTTGTTTTTTGATGCTTCTGGTTGCAGAGATGCAAAATATGTGACATTTTGTGCTATAAGAGAAGAGAAATGCAGTTATGGGATTAGGTTTTCATTCAATTTTGATAGCTAACTAGGAAGAGCGATTAAAATCTGATCATCTAACCAACTCTGAAAATTATAACAATAAGAACTAAATGGCAATTAAATCAAGGATGGTGTCCTATAGATGAAACTTTTTTAAAAACTGAAAAGCTGCTTTGTCTAAGGATTGCAATTAGCTCTTTCTTTGATGTTAACACTGTGAGACCTTTCTCACTTCCTTACAGGACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAGGTTTGTGTCTATTTTGTGGTCATGCACCCTTTTTCTCTCGCTTCCTTACATTAATTAAGTGTTCTCTTAGTTTATGATTACTCAGAAAAATTGCTTTTGCTGGTGTAGGATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAGGTGCCCTTTTTACTCTCACATCTGTCTTTACTAATCTTTTATGCAGACTTCACCTGATGTATTTTCTGCTGTTAATTACATGCGCCGTAGCTATATTTGTGTTAAAACCCAGTGGCAATTGTGAATCTTTTGAGAAAAGGATCTGTAGTCATTACTCGGCCAAGTAGCTATAACCACAATAGAAACAGTGAGGAGGCATGCGATGTATCTCTTTATCCGAGAATCAGTAGGAAAGACACAGGCATCCCAATCACTTTTTTGGCTTTGCTTTTTCAGATGACTTCAATTGGCTGC</genome_strand>
        <mrna_strand>AGATCATGTTTCGCCGTCGCCGGAGCTCTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAG............................................................................................................GATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAG....................................................................................................................................................................................................................................................................................ATGACTTCAATTGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353253" ref_strand="+" ref_description="SGN-E353253 [cTOS-14-F20]">
      <seq>ttttacttatatgtcgttagtcgaggattagaaaactccaaccccatcgaacgtcttttgtttcatcaaactcaaattaaaatttgaaactttaagagatagatgtttaagtttggaaatcgcttagagttaaagttttaacttcaatgagatattctaaaaaattggagaattcgcataagaatttctaataaggttttaataacaaaaaattgcaaaagttaaaacaataaatagtcaaattgttaatcgccggaaaaccgtattaagcggagtgtcttaggtgccttacaccttcctaagacactaatatgaatcccgaacatagctactttcgaaactcctaaaaagtcaacaatacctttaaaataaaataaactctttttcgaaataatttttcgataaaacaatattgaacactgtacatcaccaagatgtagccacaggtgattcatgatactctacagccttgaaatttaggctcttcagacaacatggctttcatatctctccagatatatttaatgattttaaggacgtgaatgacaatatgaagcaaagtggtatattagcatttatgagagaatgccaaatgctaatcctcttttgctagagcttgctaaattagactttcacattggtcaagtaacacaccaacaagatttgaaaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="88535" stop="89891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88835" g_stop="89349" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89350" i_stop="89432" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89433" g_stop="89591" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="674" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E353253" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88835" e_stop="89349"/>
          <exon e_start="89433" e_stop="89591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACTTATATGTCGTTAGTCGAGGATTAGAAAACTCCAACCCCATCGAACGTCTTTTGTTTCATCAAACTCAAATTAAAATTTGAAACTTTAAGAGATAGATGTTTAAGTTTGGAAATCGCTTAGAGTTAAAGTTTTAACTTCAATGAGATATTCTAAAAAATTGGAGAATTCGCATAAGAATTTCTAATAAGGTTTTAATAACAAAAAATTGCAAAAGTTAAAACAATAAATAGTCAAATTGTTAATCGCCGGAAAACCGTATTAAGCGGAGTGTCTTAGGTGCCTTACACCTTCCTAAGACACTAATATGAATCCCGAACATAGCTACTTTCGAAACTCCTAAAAAGTCAACAATACCTTTAAAATAAAATAAACTCTTTTTCGAAATAATTTTTCGATAAAACAATATTGAACACTGTACATCACCAAGATGTAGCCACAGGTGATTCATGATACTCTACAGCCTTGAAATTTAGGCTCTTCAGACAACATGGCTTTCATATCTCTCCAGGTAGGTACATACAAATACGAGGATCAAATTATCTAATTTGTTCATGTGATTTGTGACTTTTTTTGTTTTTGTTTTTGTTGTAGATATATTTAATGATTTTAAGGACGTGAATGACAATATGAAGCAAAGTGGTATATTAGCATTTATGAGAGAATGCCAAATGCTAATCCTCTTTTGCTAGAGCTTGCTAAATTAGACTTCAACATTGTTCAAGTAACACACCAACAAGATTTGAAAAGTCT</genome_strand>
        <mrna_strand>TTTTACTTATATGTCGTTAGTCGAGGATTAGAAAACTCCAACCCCATCGAACGTCTTTTGTTTCATCAAACTCAAATTAAAATTTGAAACTTTAAGAGATAGATGTTTAAGTTTGGAAATCGCTTAGAGTTAAAGTTTTAACTTCAATGAGATATTCTAAAAAATTGGAGAATTCGCATAAGAATTTCTAATAAGGTTTTAATAACAAAAAATTGCAAAAGTTAAAACAATAAATAGTCAAATTGTTAATCGCCGGAAAACCGTATTAAGCGGAGTGTCTTAGGTGCCTTACACCTTCCTAAGACACTAATATGAATCCCGAACATAGCTACTTTCGAAACTCCTAAAAAGTCAACAATACCTTTAAAATAAAATAAACTCTTTTTCGAAATAATTTTTCGATAAAACAATATTGAACACTGTACATCACCAAGATGTAGCCACAGGTGATTCATGATACTCTACAGCCTTGAAATTTAGGCTCTTCAGACAACATGGCTTTCATATCTCTCCAG...................................................................................ATATATTTAATGATTTTAAGGACGTGAATGACAATATGAAGCAAAGTGGTATATTAGCATTTATGAGAGAATGCCAAATGCTAATCCTCTTTTGCTAGAGCTTGCTAAATTAGACTTTCACATTGGTCAAGTAACACACCAACAAGATTTGAAAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246031" ref_strand="+" ref_description="SGN-E246031 [cLEF-54-E6]">
      <seq>caatattgaacactgtacatcaccaagatgtagccacaggtgattcatgatactctacagccttgaaatttaggctcttcagacaacatggctttcatatctctccagatatatttaatgattttaaggacgtgaatgacaatatgaagcaaagtggtatattagcatttatgagagaatgccaaatgctaatcctcttttgctagagcttgctaaattagacttcaacattgttcaagtaacacaccaacaagatttgaaaagtctatcaaggtggtggaagaaaacaggactagcaaaaaagctttcattttcaagggatatacttgttgagaatatgttttggacagtgggtgcattgtttgagcctcaacatagctactttcgaagattgataacaaaagtcattgtttttatttcaatcatagatgacatttatgatgtttatggcacgcttgatgagttggaactcttcacacttgctattcaaaggtaattataattttctatcgcaaaataattacaaaatttgattttctagtaaaaattcagatgggatacaaaagcaatggaccaaattccatactctatgaaagtatgttatcttgcactcattaatattatcaatgaaggtgcgtatgatgttctcaaaaatcatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="88942" stop="91100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89242" g_stop="89349" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89350" i_stop="89432" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89433" g_stop="89597" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="273" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89598" i_stop="90410" i_length="813">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90411" g_stop="90800" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="663" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E246031" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89242" e_stop="89349"/>
          <exon e_start="89433" e_stop="89597"/>
          <exon e_start="90411" e_stop="90800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTGAACACTGTACATCACCAAGATGTAGCCACAGGTGATTCATGATACTCTACAGCCTTGAAATTTAGGCTCTTCAGACAACATGGCTTTCATATCTCTCCAGGTAGGTACATACAAATACGAGGATCAAATTATCTAATTTGTTCATGTGATTTGTGACTTTTTTTGTTTTTGTTTTTGTTGTAGATATATTTAATGATTTTAAGGACGTGAATGACAATATGAAGCAAAGTGGTATATTAGCATTTATGAGAGAATGCCAAATGCTAATCCTCTTTTGCTAGAGCTTGCTAAATTAGACTTCAACATTGTTCAAGTAACACACCAACAAGATTTGAAAAGTCTATCAAGGTGAGATATTTTCTAAGTGACAGATTCAGAATAGCCTTAGATTGAATTAAACCCTCCTCAAAACCACTCACTCCTTTCCAATTAGTATTATTTTTATTTTTTATTAAAAATTTGTTACCTCACTCCATCTAACCTCCGCTCCCAAATTATTACTCCCATCATTATAAAAAGAATGACTCTATTTCCTTTTTAGTCTGTTTCAAAAAAAATAACCCTCAACACTTTAACTTTAAACATGTTTATGATCAAAAGATTAAAGGGCATTTTGGTACATTTAACATAAATTTAATTTAGAACCACAAGATTAAAAAGTTTTCTTTCTTTTCTTAAACTTCGTTCCAAATCAAACTAGGTTATCCTTTTTGAAACAAGGAGGGAATATCATATTTTTTACTCTCTTTTTTTTGTGAGATATATACCTATGTTTTTAAGAAAATATTTTTTACATACAAAATATAACAGAAATAAAAATTTAGTATTTTTCTTGAGTTGGTGATACTTTAATCTTTAACTTTTAACTAATATTAATAATTTATTTAATTTTTATCAAAGTGAAATGTTTTTTCTTAAAGTGCCACGTGATAATTTTTTAAAAACAAAAGAGTGTGATACACACACCATCTAAAAGAGTGTAACAAAAGAGAAAGGTGTTTTCTCAAATAAGTGAGTGATAATTTAGGTCTGAAAATGAAAAAAAAATACATAGTTTAAATATGTTTTTGACATTTCACGTCCAAAATAAAAACTTTCAACTAATCTAGAGATGAATGAAACAAAACTTTCAGCTGAAACATTAGTTTTGATGTAAATTAGGTGGTGGAAGAAAACAGGACTAGCAAAAAAGCTTTCATTTTCAAGGGATATACTTGTTGAGAATATGTTTTGGACAGTGGGTGCATTGTTTGAGCCTCAACATAGCTACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACACTTGCTATTCAAAGGTAATTATAATTTTCTATCGCAAAATAATTACAAAATTTGATTTTCTAGTAAAAATTCAGATGGGATACAAAAGCAATGGACCAAATTCCATACTCTATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGTTGCGTATGATGTTCTCAAAAATCATGACAT</genome_strand>
        <mrna_strand>CAATATTGAACACTGTACATCACCAAGATGTAGCCACAGGTGATTCATGATACTCTACAGCCTTGAAATTTAGGCTCTTCAGACAACATGGCTTTCATATCTCTCCAG...................................................................................ATATATTTAATGATTTTAAGGACGTGAATGACAATATGAAGCAAAGTGGTATATTAGCATTTATGAGAGAATGCCAAATGCTAATCCTCTTTTGCTAGAGCTTGCTAAATTAGACTTCAACATTGTTCAAGTAACACACCAACAAGATTTGAAAAGTCTATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGAAAACAGGACTAGCAAAAAAGCTTTCATTTTCAAGGGATATACTTGTTGAGAATATGTTTTGGACAGTGGGTGCATTGTTTGAGCCTCAACATAGCTACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACACTTGCTATTCAAAGGTAATTATAATTTTCTATCGCAAAATAATTACAAAATTTGATTTTCTAGTAAAAATTCAGATGGGATACAAAAGCAATGGACCAAATTCCATACTCTATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGGTGCGTATGATGTTCTCAAAAATCATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358983" ref_strand="+" ref_description="SGN-E358983 [cLHT-24-F16]">
      <seq>tagagcttgctaaattggacttcaacattgttcaagcaacacaccaacaagatttgagagttctatcaaggtggtggaagaatacagggcttgcggaaaagcttccattttcaagggatattctggttgagaatatgttttggacagtaggggcattatttgagcctcaacatagctactttcgaagattgataacaaaagtcattgtttttatttcaatcatagatgacatttatgatgtttatggcacgcttgatgagttggaactcttcactcttgctattcaaaggtaattataattctctatcgcaaaataattacaaaatttgattttctagtaataattcagatgggatacaaaagcaatggagcatgttatcaatgaagtatatgaaagtatgttatcttgcactcattaatattatcaatgaagttgcgtatgaggttctcaaaaatcatgacatcaacgtcctaccctaccttacaaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="89228" stop="91127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89528" g_stop="89597" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89598" i_stop="90410" i_length="813">
            <donor d_prob="0.958" d_score="0.92"/>
            <acceptor a_prob="0.945" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90411" g_stop="90827" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="492" r_length="422" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E358983" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89528" e_stop="89597"/>
          <exon e_start="90411" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGCTTGCTAAATTAGACTTCAACATTGTTCAAGTAACACACCAACAAGATTTGAAAAGTCTATCAAGGTGAGATATTTTCTAAGTGACAGATTCAGAATAGCCTTAGATTGAATTAAACCCTCCTCAAAACCACTCACTCCTTTCCAATTAGTATTATTTTTATTTTTTATTAAAAATTTGTTACCTCACTCCATCTAACCTCCGCTCCCAAATTATTACTCCCATCATTATAAAAAGAATGACTCTATTTCCTTTTTAGTCTGTTTCAAAAAAAATAACCCTCAACACTTTAACTTTAAACATGTTTATGATCAAAAGATTAAAGGGCATTTTGGTACATTTAACATAAATTTAATTTAGAACCACAAGATTAAAAAGTTTTCTTTCTTTTCTTAAACTTCGTTCCAAATCAAACTAGGTTATCCTTTTTGAAACAAGGAGGGAATATCATATTTTTTACTCTCTTTTTTTTGTGAGATATATACCTATGTTTTTAAGAAAATATTTTTTACATACAAAATATAACAGAAATAAAAATTTAGTATTTTTCTTGAGTTGGTGATACTTTAATCTTTAACTTTTAACTAATATTAATAATTTATTTAATTTTTATCAAAGTGAAATGTTTTTTCTTAAAGTGCCACGTGATAATTTTTTAAAAACAAAAGAGTGTGATACACACACCATCTAAAAGAGTGTAACAAAAGAGAAAGGTGTTTTCTCAAATAAGTGAGTGATAATTTAGGTCTGAAAATGAAAAAAAAATACATAGTTTAAATATGTTTTTGACATTTCACGTCCAAAATAAAAACTTTCAACTAATCTAGAGATGAATGAAACAAAACTTTCAGCTGAAACATTAGTTTTGATGTAAATTAGGTGGTGGAAGAAAACAGGACTAGCAAAAAAGCTTTCATTTTCAAGGGATATACTTGTTGAGAATATGTTTTGGACAGTGGGTGCATTGTTTGAGCCTCAACATAGCTACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACACTTGCTATTCAAAGGTAATTATAATTTTCTATCGCAAAATAATTACAAAATTTGATTTTCTAGTAAAAATTCAGATGGGATACAAAAGCAATGGACCA-AAT-TCCAT--ACTCTATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGTTGCGTATGATGTTCTCAAAAATCATGACATCAAC-TCCTACCCTACCTTACAAAATCA</genome_strand>
        <mrna_strand>TAGAGCTTGCTAAATTGGACTTCAACATTGTTCAAGCAACACACCAACAAGATTTGAGAGTTCTATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGAATACAGGGCTTGCGGAAAAGCTTCCATTTTCAAGGGATATTCTGGTTGAGAATATGTTTTGGACAGTAGGGGCATTATTTGAGCCTCAACATAGCTACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACTCTTGCTATTCAAAGGTAATTATAATTCTCTATCGCAAAATAATTACAAAATTTGATTTTCTAGTAATAATTCAGATGGGATACAAAAGCAATGGAGCATGTTATCAATGAAGTATATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGTTGCGTATGAGGTTCTCAAAAATCATGACATCAACGTCCTACCCTACCTTACAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233499" ref_strand="+" ref_description="SGN-E233499 [cLED-9-K13]">
      <seq>tactttcgaagattgataacaaaagtcattgtttttatttcaatcatagatgacatttatgatgtttatggcacacttgatgagttggaactcttcactcttgctattcaaagatgggatacaaaagcaatggagcaacttccagactatatgaaagtatgttatcttgcactcatcaatattatcaatgaagttgcgtatgaggttctcaaaaatcatgacatcaacgtcctaccctaccttacaaaatcatgggcagatttgtgcaaatcatacttacaagaagcaaaatggtaccacaatggatacaagccaaatctggaagaatacatggataatgcaaggatctcaattggagtaccaatggtattagtccactcattgttcctagtcacaaatcaaattaccaaagaggccttggattccttaaccaattatcctgatattattcgatggtctgctactattttccgtttaaacgatgatttggggacatcttcggatgaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="90217" stop="91478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90517" g_stop="90629" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90630" i_stop="90689" i_length="60">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.749" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90690" g_stop="90827" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="252" r_length="139" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90828" i_stop="90922" i_length="95">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90923" g_stop="91172" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="501" r_length="249" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91173" i_stop="91302" i_length="130">
            <donor d_prob="0.881" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91303" g_stop="91311" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="510" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E233499" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90517" e_stop="90629"/>
          <exon e_start="90690" e_stop="90827"/>
          <exon e_start="90923" e_stop="91172"/>
          <exon e_start="91303" e_stop="91311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACACTTGCTATTCAAAGGTAATTATAATTTTCTATCGCAAAATAATTACAAAATTTGATTTTCTAGTAAAAATTCAGATGGGATACAAAAGCAATGGACCAAATTCCATACTCTATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGTTGCGTATGATGTTCTCAAAAATCATGACATCAAC-TCCTACCCTACCTTACAAAATCAGTAAGATTCATTCTACTTAACAAATAATTTCTTTTCCCAAAATACCCCTGATATTCTCCGAAACGAATTCAATATTTAAATGGCTTGTTAACTAGTGGGCAGATTTGTGCAAATCATACTTACAAGAAGCAAAATGGTAACCACAATGGATACAAGCCAAATCTGGAAGAGTATATGGATAATGCAAGGATCTCAATTGCAGTACCAATGATATTAGTCCATGTATTGGTCCTTGTCACAAATCAAATTACCAAAGAGGCCTTAGAATCCTTAACCAATTATCCTGATATTATTCGATGGTCTACTACTATTTTTCGTTTAAACGATGATTTGGGTACATCCTCGGTAATGCCTTTCTCACGCATAAAATTAAACTTATACTTTATTTTACGAAGAAAAAAAACTCAAGTTAGTGTATCTTATTATGAATAAATAAAACATCTAACAAATTTATTTAATTCCATAATTAATTCAGGATGAATTG</genome_strand>
        <mrna_strand>TACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACACTTGATGAGTTGGAACTCTTCACTCTTGCTATTCAAAG............................................................ATGGGATACAAAAGCAATGGAGCAACTTCCAGACTATATGAAAGTATGTTATCTTGCACTCATCAATATTATCAATGAAGTTGCGTATGAGGTTCTCAAAAATCATGACATCAACGTCCTACCCTACCTTACAAAATCA...............................................................................................TGGGCAGATTTGTGCAAATCATACTTACAAGAAGCAAAATGGT-ACCACAATGGATACAAGCCAAATCTGGAAGAATACATGGATAATGCAAGGATCTCAATTGGAGTACCAATGGTATTAGTCCACTCATTGTTCCTAGTCACAAATCAAATTACCAAAGAGGCCTTGGATTCCTTAACCAATTATCCTGATATTATTCGATGGTCTGCTACTATTTTCCGTTTAAACGATGATTTGGGGACATCTTCG..................................................................................................................................GATGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305893" ref_strand="+" ref_description="SGN-E305893 [cLEY-17-F15]">
      <seq>tgctgtttaattatttgtatagtcacgtgaaacataagtattatggatgtataaactggaaatgacaatgtctattagcaaatcaaatttaatttcgaaattagaggttccaaaatcctgcatttctaacgtgccaattcgacgatctggaaactatcaaccttctatttgggactataatcatattcaatcactgaagaatcattattcagacgagaaattcatgagacgccgcaatgagctgaagatggaagtgaagattatgctcagtgatcgtaacatgaagcaattggaacagttggagattattgataatttgcaaaggcttggattgtcttatcactttgaagatgaaatatacagtattttgaataacttaagtgacaaaggtagcaaaagagatcacttgtatgctaaagctcttgaattcaggctcttgagacaacatggatttaacattgtttcacaagaaacttttggtggtttctatgataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="92266" stop="93645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92566" g_stop="92776" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92777" i_stop="92863" i_length="87">
            <donor d_prob="0.594" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92864" g_stop="93122" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="470" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93123" i_stop="93318" i_length="196">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93319" g_stop="93345" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="497" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E305893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92566" e_stop="92776"/>
          <exon e_start="92864" e_stop="93122"/>
          <exon e_start="93319" e_stop="93345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTTAATTATTTGTATAGTCACGTGAAACATAAGTATTATGGATGTATAAACTGGAAATGACAATGTCTATTAGCAAATCAAATTTAATTTCGAAATTAGAGGTTCCAAAATCCTGCATTTCTAACGTGCCAATTCGACGATCTGGAAACTATCAACCTTCTATTTGGGACTATAATCATATTCAATCACTGAAGAATCATTATTCAGTAACCATTTCTCTCTAGCAGCTTATATATTAACTGTATTCACAAAATCTTTTATTTTATTTGTGTAACCCTAATCTATATATGTAGGACGAGAAATTCATGAGACGCCGCAATGAGCTGAAGATGGAAGTGAAGATTATGCTCAGTGATCGTAACATGAAGCAATTGGAACAGTTGGAGATTATTGATAATTTGCAAAGGCTTGGATTGTCTTATCACTTTGAAGATGAAATATACAGTATTTTGAATAACTTAAGTGACAAAGGTAGCAAAAGAGATCACTTGTATGCTAAAGCTCTTGAATTCAGGCTCTTGAGACAACATGGATTTAACATTGTTTCACAAGGTCCTTTATCGTATCGACTAGTTTTCTCCCTTATTTCTATTCTATTTCTTTTACTATATCCATCTAAGTATCTTTCGGTATGACTAATTCAAATTTACACTTTGATCATTTGCACCGTATGCATGTTACCTTACTTTTTGCATTCCAAGGCTCGAATCATATGATACAAATTAATAAAATCTTGTTCTGGTTGCAGAAACTTTTGGTGGTTTCTATGATAATA</genome_strand>
        <mrna_strand>TGCTGTTTAATTATTTGTATAGTCACGTGAAACATAAGTATTATGGATGTATAAACTGGAAATGACAATGTCTATTAGCAAATCAAATTTAATTTCGAAATTAGAGGTTCCAAAATCCTGCATTTCTAACGTGCCAATTCGACGATCTGGAAACTATCAACCTTCTATTTGGGACTATAATCATATTCAATCACTGAAGAATCATTATTCA.......................................................................................GACGAGAAATTCATGAGACGCCGCAATGAGCTGAAGATGGAAGTGAAGATTATGCTCAGTGATCGTAACATGAAGCAATTGGAACAGTTGGAGATTATTGATAATTTGCAAAGGCTTGGATTGTCTTATCACTTTGAAGATGAAATATACAGTATTTTGAATAACTTAAGTGACAAAGGTAGCAAAAGAGATCACTTGTATGCTAAAGCTCTTGAATTCAGGCTCTTGAGACAACATGGATTTAACATTGTTTCACAAG....................................................................................................................................................................................................AAACTTTTGGTGGTTTCTATGATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298132" ref_strand="+" ref_description="SGN-E298132 [cLEW-9-I13]">
      <seq>atttgtatagtcacgtgaaacataagtattatggatgtataaactggaaatgacaatgtctattagcaaatcaaatttaatttcgaaattagaggttccaaaatcctgcatttctaacgtgccaattcgacgatctggaaactatcaaccttctatttgggactataatcatattcaatcactgaagaatcattattcagacgagaaattcatgagacgccgcaatgagctgaagatggaagtgaagattatgctcagtgatcgtaacatgaagcaattggaacagttggagattattgataatttgcaaaggcttggattgtcttatcactttgaagatgaaatatacagtattttgaataacttaagtgacaaaggtggcaaaagagatcacttgtatgctaaagctcttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="92278" stop="93380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92578" g_stop="92776" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92777" i_stop="92863" i_length="87">
            <donor d_prob="0.594" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92864" g_stop="93080" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="416" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E298132" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92578" e_stop="92776"/>
          <exon e_start="92864" e_stop="93080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATAGTCACGTGAAACATAAGTATTATGGATGTATAAACTGGAAATGACAATGTCTATTAGCAAATCAAATTTAATTTCGAAATTAGAGGTTCCAAAATCCTGCATTTCTAACGTGCCAATTCGACGATCTGGAAACTATCAACCTTCTATTTGGGACTATAATCATATTCAATCACTGAAGAATCATTATTCAGTAACCATTTCTCTCTAGCAGCTTATATATTAACTGTATTCACAAAATCTTTTATTTTATTTGTGTAACCCTAATCTATATATGTAGGACGAGAAATTCATGAGACGCCGCAATGAGCTGAAGATGGAAGTGAAGATTATGCTCAGTGATCGTAACATGAAGCAATTGGAACAGTTGGAGATTATTGATAATTTGCAAAGGCTTGGATTGTCTTATCACTTTGAAGATGAAATATACAGTATTTTGAATAACTTAAGTGACAAAGGTAGCAAAAGAGATCACTTGTATGCTAAAGCTCTTGAAT</genome_strand>
        <mrna_strand>ATTTGTATAGTCACGTGAAACATAAGTATTATGGATGTATAAACTGGAAATGACAATGTCTATTAGCAAATCAAATTTAATTTCGAAATTAGAGGTTCCAAAATCCTGCATTTCTAACGTGCCAATTCGACGATCTGGAAACTATCAACCTTCTATTTGGGACTATAATCATATTCAATCACTGAAGAATCATTATTCA.......................................................................................GACGAGAAATTCATGAGACGCCGCAATGAGCTGAAGATGGAAGTGAAGATTATGCTCAGTGATCGTAACATGAAGCAATTGGAACAGTTGGAGATTATTGATAATTTGCAAAGGCTTGGATTGTCTTATCACTTTGAAGATGAAATATACAGTATTTTGAATAACTTAAGTGACAAAGGTGGCAAAAGAGATCACTTGTATGCTAAAGCTCTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301762" ref_strand="+" ref_description="SGN-E301762 [cLEX-9-P14]">
      <seq>acaatgtctattagcaaatcaaatttaatttcgaaattagaggttccaaaatcctgcatttctaacgtgccaattcgacgatctggaaactatcaaccttctatttgggactataatcatattcaatcactgaagaatcattattcagacgagaaattcatgagacgccgcaatgagctgaagatggaagtgaagattatgctcagtgatcgtaacatgaagcaattggaacagttggagattattgataatttgcaaaggcttggattgtcttatcactttgaagatgaaatatacagtattttgaataacttaagtgacaaaggtagcaaaagagatcacttgtatgctaaagctcttgaattcaggctcttgagacaacatggatttaacattgtttcacaagaaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="92330" stop="93422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92630" g_stop="92776" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92777" i_stop="92863" i_length="87">
            <donor d_prob="0.594" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92864" g_stop="93122" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="406" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93123" i_stop="93318" i_length="196">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93319" g_stop="93326" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="414" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E301762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92630" e_stop="92776"/>
          <exon e_start="92864" e_stop="93122"/>
          <exon e_start="93319" e_stop="93326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGTCTATTAGCAAATCAAATTTAATTTCGAAATTAGAGGTTCCAAAATCCTGCATTTCTAACGTGCCAATTCGACGATCTGGAAACTATCAACCTTCTATTTGGGACTATAATCATATTCAATCACTGAAGAATCATTATTCAGTAACCATTTCTCTCTAGCAGCTTATATATTAACTGTATTCACAAAATCTTTTATTTTATTTGTGTAACCCTAATCTATATATGTAGGACGAGAAATTCATGAGACGCCGCAATGAGCTGAAGATGGAAGTGAAGATTATGCTCAGTGATCGTAACATGAAGCAATTGGAACAGTTGGAGATTATTGATAATTTGCAAAGGCTTGGATTGTCTTATCACTTTGAAGATGAAATATACAGTATTTTGAATAACTTAAGTGACAAAGGTAGCAAAAGAGATCACTTGTATGCTAAAGCTCTTGAATTCAGGCTCTTGAGACAACATGGATTTAACATTGTTTCACAAGGTCCTTTATCGTATCGACTAGTTTTCTCCCTTATTTCTATTCTATTTCTTTTACTATATCCATCTAAGTATCTTTCGGTATGACTAATTCAAATTTACACTTTGATCATTTGCACCGTATGCATGTTACCTTACTTTTTGCATTCCAAGGCTCGAATCATATGATACAAATTAATAAAATCTTGTTCTGGTTGCAGAAACTTTT</genome_strand>
        <mrna_strand>ACAATGTCTATTAGCAAATCAAATTTAATTTCGAAATTAGAGGTTCCAAAATCCTGCATTTCTAACGTGCCAATTCGACGATCTGGAAACTATCAACCTTCTATTTGGGACTATAATCATATTCAATCACTGAAGAATCATTATTCA.......................................................................................GACGAGAAATTCATGAGACGCCGCAATGAGCTGAAGATGGAAGTGAAGATTATGCTCAGTGATCGTAACATGAAGCAATTGGAACAGTTGGAGATTATTGATAATTTGCAAAGGCTTGGATTGTCTTATCACTTTGAAGATGAAATATACAGTATTTTGAATAACTTAAGTGACAAAGGTAGCAAAAGAGATCACTTGTATGCTAAAGCTCTTGAATTCAGGCTCTTGAGACAACATGGATTTAACATTGTTTCACAAG....................................................................................................................................................................................................AAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543948" ref_strand="+" ref_description="SGN-E543948 [TUS-66-A11]">
      <seq>agaataccagatggagtatcgacgaattggatagactcccagacaatatgaagatgtgttattatgcgctcgataactttattaaccaattggctgatgatgcttttgaagagcaaggcattttcatttcaccatatctaagaaattcggtaacttatcccttcttctttttttatttcgaaaataagacaaattattatcatgtctgcaagtctaactcgataggtagtattacattgtgaatttaaatttcagtggagagatttgtgcaaatcatacctgagagaagcaaagtggtaccatagccagtatatcccaagtatggaagaatatatggacaacgcctggatttcaatatcagctccagtaatattagtacatgcatatttcctcgttgccaaccctgtaaacaaggaggcattgcattacttggagaataattaccatgatatcattcgttgctcagcgttaattttgaggctcgccaatgatttaggaacatcatcggacgagttgaaaaggggtgacgtaccaaaatcaatacaatgttacatgaacgaaacacaagcttcagaagaagaggctagacaatacatcagactgctgattagccagacatggaagaaattgaacgaagctcattggctagcagcagaccccttcccaaagatatttgttacgtgtgctatgaacctagcaagaatggcacaatgcatgtatcagcatggtgatggccatggcggtaataactccacgactaaaaacacatcatggcgttgctctttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="93927" stop="95396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94227" g_stop="94733" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94734" i_stop="94814" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94815" g_stop="95096" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="788" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E543948" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94227" e_stop="94733"/>
          <exon e_start="94815" e_stop="95096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATACCAGATGGAGTATCGACGAATTGGATAGACTCCCAGACAATATGAAGATGTGTTATTATGCGCTCGATAACTTTATTAACCAATTGGCTGATGATGCTTTTGAAGAGCAAGGCATTTTCATTTCACCATATCTAAGAAATTCGGTAACTTATCCCTTCTTCTTTTTTTATTTCGAAAATAAGACAAATTATTATCATGTCTGCAAGTCTAACTCGATAGGTAGTATTACATTGTGAATTTAAATTTCAGTGGAGAGATTTGTGCAAATCATACCTGAGAGAAGCAAAGTGGTACCATAGCCAGTATATCCCAAGTATGGAAGAATATATGGACAACGCCTGGATTTCAATATCAGCTCCAGTAATATTAGTACATGCATATTTCCTCGTTGCCAACCCTGTAAACAAGGAGGCATTGCATTACTTGGAGAATAATTACCATGATATCATTCGTTGCTCAGCGTTAATTTTGAGGCTCGCCAATGATTTAGGAACATCATCGGTATAATTCAACTTGTTATAAAAGGTTATCTGCCTAATTATTTTTATTTACCAACACTAGTATTTCCTTTGTGTAATGCAGGACGAGTTGAAAAGGGGTGACGTACCAAAATCAATACAATGTTACATGAACGAAACACAAGCTTCAGAAGAAGAGGCTAGACAATACATCAGACTGCTGATTAGCCAGACATGGAAGAAATTGAACGAAGCTCATTGGCTAGCAGCAGACCCCTTCCCAAAGATATTTGTTACGTGTGCTATGAACCTAGCAAGAATGGCACAATGCATGTATCAGCATGGTGATGGCCATGGCGGTAATAACTCCACGACTAAAAACCACATCATGGCGTTGCTCTTTGAA</genome_strand>
        <mrna_strand>AGAATACCAGATGGAGTATCGACGAATTGGATAGACTCCCAGACAATATGAAGATGTGTTATTATGCGCTCGATAACTTTATTAACCAATTGGCTGATGATGCTTTTGAAGAGCAAGGCATTTTCATTTCACCATATCTAAGAAATTCGGTAACTTATCCCTTCTTCTTTTTTTATTTCGAAAATAAGACAAATTATTATCATGTCTGCAAGTCTAACTCGATAGGTAGTATTACATTGTGAATTTAAATTTCAGTGGAGAGATTTGTGCAAATCATACCTGAGAGAAGCAAAGTGGTACCATAGCCAGTATATCCCAAGTATGGAAGAATATATGGACAACGCCTGGATTTCAATATCAGCTCCAGTAATATTAGTACATGCATATTTCCTCGTTGCCAACCCTGTAAACAAGGAGGCATTGCATTACTTGGAGAATAATTACCATGATATCATTCGTTGCTCAGCGTTAATTTTGAGGCTCGCCAATGATTTAGGAACATCATCG.................................................................................GACGAGTTGAAAAGGGGTGACGTACCAAAATCAATACAATGTTACATGAACGAAACACAAGCTTCAGAAGAAGAGGCTAGACAATACATCAGACTGCTGATTAGCCAGACATGGAAGAAATTGAACGAAGCTCATTGGCTAGCAGCAGACCCCTTCCCAAAGATATTTGTTACGTGTGCTATGAACCTAGCAAGAATGGCACAATGCATGTATCAGCATGGTGATGGCCATGGCGGTAATAACTCCACGACTAAAAA-CACATCATGGCGTTGCTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305427" ref_strand="+" ref_description="SGN-E305427 [cLEX-15-G16]">
      <seq>gaataccagatggagtatcgacgaattggatagactcccagacaatatgaagatgtgttattatgcgctcgataactttattaaccaattggctgatgatgcttttgaagagcaaggcattttcatttcaccatatctaagaaattcggtaacttatcccttcttctttttttatttcgaaaataagacaaattattatcatgtctgcaagtctaactcgataggtagtattacattgtgaatttaaatttcagtggagagatttgtgcaaatcatacctgagagaagcaaagtggtaccatagccagtatatcccaagtatggaagaatatatggacaacgcctggatttcaatatcagctccagtaatattagtacatgcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="93928" stop="94914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94228" g_stop="94614" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E305427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94228" e_stop="94614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACCAGATGGAGTATCGACGAATTGGATAGACTCCCAGACAATATGAAGATGTGTTATTATGCGCTCGATAACTTTATTAACCAATTGGCTGATGATGCTTTTGAAGAGCAAGGCATTTTCATTTCACCATATCTAAGAAATTCGGTAACTTATCCCTTCTTCTTTTTTTATTTCGAAAATAAGACAAATTATTATCATGTCTGCAAGTCTAACTCGATAGGTAGTATTACATTGTGAATTTAAATTTCAGTGGAGAGATTTGTGCAAATCATACCTGAGAGAAGCAAAGTGGTACCATAGCCAGTATATCCCAAGTATGGAAGAATATATGGACAACGCCTGGATTTCAATATCAGCTCCAGTAATATTAGTACATGCATATT</genome_strand>
        <mrna_strand>GAATACCAGATGGAGTATCGACGAATTGGATAGACTCCCAGACAATATGAAGATGTGTTATTATGCGCTCGATAACTTTATTAACCAATTGGCTGATGATGCTTTTGAAGAGCAAGGCATTTTCATTTCACCATATCTAAGAAATTCGGTAACTTATCCCTTCTTCTTTTTTTATTTCGAAAATAAGACAAATTATTATCATGTCTGCAAGTCTAACTCGATAGGTAGTATTACATTGTGAATTTAAATTTCAGTGGAGAGATTTGTGCAAATCATACCTGAGAGAAGCAAAGTGGTACCATAGCCAGTATATCCCAAGTATGGAAGAATATATGGACAACGCCTGGATTTCAATATCAGCTCCAGTAATATTAGTACATGCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543947" ref_strand="+" ref_description="SGN-E543947 [TUS-66-A11](-)">
      <seq>gtatcagcatggtgatgcccatggcggtaataactccacgactaaaaaccacatcatggcgttgctctttgaatccgttcctctaggacacaaacattcttcagcagaaaaagaggaccactctatggtcaactatagagagaaattcatgatctaggggtcattgagttgtgaatgaactttcaccttgtttgtaaggttttgattccccaccctgcaatttcctccccatttatagaaggggcaggggggaagagagaaggctcagtgggtgcagtatgcatagtacacaatgcattatcaaaactgcatatgatttggcagttgattcatagctatataatcaatcacagtgcccttttttgggatctgatagcctcaagttactcgcctctttctgaaagaaagaagaaactttacaaggttcctttatcagaactaagggaagtttgaacgtctgacagatctcatttcagagtatggtccagaaggaaaattacagctcgccaacaaataacctttttgaattttcagtcatattctaattttgaatcatagtggacgatatgtcttcccactatcaataatattgtacgtaataggataggaaacctatctattcatcaagttcaaagtgtcaatatccatacaacaataacatccaaaaaaatggacgatgatcctttaataagaacagatatggatgaatcgatatgggacttgtgccatattcttgactactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="94724" stop="96066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95024" g_stop="95775" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E543947" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95024" e_stop="95775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAGCATGGTGATGGCCATGGCGGTAATAACTCCACGACTAAAAACCACATCATGGCGTTGCTCTTTGAATCCGTTCCTCTAGGACACAAACATTCTTCAGCAGAAAAAGAGGACCACTCTATGGTCAACTATAGAGAGAAATTCATGATCTAGGGGTCATTGAGTTGTGAATGAACTTTCACCTTGTTTGTAAGGTTTTGATTCCCCACCCTGCAATTTCCTCCCCATTTATAGAAGGGGCAGGGGGGAAGAGAGAAGGCTCAGTGGGTGCAGTATGCATAGTACACAATGCATTATCAAAACTGCATATGATTTGGCAGTTGATTCATAGCTATATAATCAATCACAGTGCCCTTTTTTGGGATCTGATAGCCTCAAGTTACTCGCCTCTTTCTGAAAGAAAGAAGAAACTTTACAAGGTTCCTTTATCAGAACTAAGGGAAGTTTGAACGTCTGACAGATCTCATTTCAGAGTATGGTCCAGAAGGAAAATTACAGCTCGCCAACAAATAACCTTTTTGAATTTTCAGTCATATTCTAATTTTGAATCATAGTGGACGATATGTCTTCCCACTATCAATAATATTGTACGTAATAGGATAGGAAACCTATCTATTCATCAAGTTCAAAGTGTCAATATCCATACAACAATAACATCCAAAAAAATGGACGATGATCCTTTAATAAGAACAGATATGGATGAATCGATATGGGACTTGTGCCATATTCTTGACTACTAGTGCAACTG</genome_strand>
        <mrna_strand>GTATCAGCATGGTGATGCCCATGGCGGTAATAACTCCACGACTAAAAACCACATCATGGCGTTGCTCTTTGAATCCGTTCCTCTAGGACACAAACATTCTTCAGCAGAAAAAGAGGACCACTCTATGGTCAACTATAGAGAGAAATTCATGATCTAGGGGTCATTGAGTTGTGAATGAACTTTCACCTTGTTTGTAAGGTTTTGATTCCCCACCCTGCAATTTCCTCCCCATTTATAGAAGGGGCAGGGGGGAAGAGAGAAGGCTCAGTGGGTGCAGTATGCATAGTACACAATGCATTATCAAAACTGCATATGATTTGGCAGTTGATTCATAGCTATATAATCAATCACAGTGCCCTTTTTTGGGATCTGATAGCCTCAAGTTACTCGCCTCTTTCTGAAAGAAAGAAGAAACTTTACAAGGTTCCTTTATCAGAACTAAGGGAAGTTTGAACGTCTGACAGATCTCATTTCAGAGTATGGTCCAGAAGGAAAATTACAGCTCGCCAACAAATAACCTTTTTGAATTTTCAGTCATATTCTAATTTTGAATCATAGTGGACGATATGTCTTCCCACTATCAATAATATTGTACGTAATAGGATAGGAAACCTATCTATTCATCAAGTTCAAAGTGTCAATATCCATACAACAATAACATCCAAAAAAATGGACGATGATCCTTTAATAAGAACAGATATGGATGAATCGATATGGGACTTGTGCCATATTCTTGACTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217671" ref_strand="+" ref_description="SGN-E217671 [cLEL-25-E15](-)">
      <seq>atgctgttttttgatgatgaaaatcggaacatacagcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttattgttgtatggatattgacactttgaacttgatgaatagataggtttcctatcctattacgtacaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="96467" stop="95311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96167" g_stop="96129" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95993" g_stop="95614" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="418" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95613" i_stop="95421" i_length="193">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95420" g_stop="95415" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="424" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="440"/>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E217671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96167" e_stop="96129"/>
          <exon e_start="95993" e_stop="95614"/>
          <exon e_start="95420" e_stop="95415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAGGTTATTTGTTGGCGAGCTGTAATTTTCCTTCTGGACCATACTCTGAAATGAGATCTGTCAGACGTTCAAACTTCCCTTAGTTCTGATAAAGGAACCTTGTAAAGTTTCTTCTTTCTTTCAGAAAGAG</genome_strand>
        <mrna_strand>ATGCTGTTTTTTGATGATGAAAATCGGAACATACA-GCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACA.................................................................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217714" ref_strand="+" ref_description="SGN-E217714 [cLEL-25-E3](-)">
      <seq>tgctgttttttgatgatgaaaatcggaacatacaggggtttcaaaaatgggtgtacaagntatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttattgttgtatggatattgacactttgaacttgatgaatagataggtttcctatcctattacgttcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="96466" stop="95311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96166" g_stop="96129" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95993" g_stop="95614" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="417" r_length="380" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95613" i_stop="95421" i_length="193">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95420" g_stop="95415" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="423" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="439"/>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E217714" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96166" e_stop="96129"/>
          <exon e_start="95993" e_stop="95614"/>
          <exon e_start="95420" e_stop="95415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAG-TATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAGGTTATTTGTTGGCGAGCTGTAATTTTCCTTCTGGACCATACTCTGAAATGAGATCTGTCAGACGTTCAAACTTCCCTTAGTTCTGATAAAGGAACCTTGTAAAGTTTCTTCTTTCTTTCAGAAAGAG</genome_strand>
        <mrna_strand>TGCTGTTTTTTGATGATGAAAATCGGAACATACAGG-G.......................................................................................................................................GTTTCAAAAATGGGTGT-ACAAGNTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTTCA.................................................................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225275" ref_strand="+" ref_description="SGN-E225275 [cLEL-17-I14](-)">
      <seq>tgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttattgttgtatggatattgacactttgaacttgatgaatagataggtttcctatcctattacgtccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="96466" stop="95311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96166" g_stop="96129" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95993" g_stop="95614" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="418" r_length="380" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95613" i_stop="95421" i_length="193">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95420" g_stop="95415" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="424" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="434"/>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E225275" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96166" e_stop="96129"/>
          <exon e_start="95993" e_stop="95614"/>
          <exon e_start="95420" e_stop="95415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAGGTTATTTGTTGGCGAGCTGTAATTTTCCTTCTGGACCATACTCTGAAATGAGATCTGTCAGACGTTCAAACTTCCCTTAGTTCTGATAAAGGAACCTTGTAAAGTTTCTTCTTTCTTTCAGAAAGAG</genome_strand>
        <mrna_strand>TGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTCCA.................................................................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225422" ref_strand="+" ref_description="SGN-E225422 [cLEL-17-I14](-)">
      <seq>gtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggcctctccgagtttgttaagaaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttattgttgtatggatattgacactttgaacttgatgaatagataggtttcctatcctattacgtacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="96278" stop="95311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95978" g_stop="95614" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95613" i_stop="95421" i_length="193">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95420" g_stop="95415" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="372" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="382"/>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E225422" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95978" e_stop="95614"/>
          <exon e_start="95420" e_stop="95415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGA-ATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAGGTTATTTGTTGGCGAGCTGTAATTTTCCTTCTGGACCATACTCTGAAATGAGATCTGTCAGACGTTCAAACTTCCCTTAGTTCTGATAAAGGAACCTTGTAAAGTTTCTTCTTTCTTTCAGAAAGAG</genome_strand>
        <mrna_strand>GTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGCCTCTCCGAGTTTGTTAAGAAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACA.................................................................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716235" ref_strand="+" ref_description="SGN-E716235 [FB16BH12]">
      <seq>atcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttattgttgtatggatattgacactttgaacttgatgaatagataggtttcctatcctattacgtacaatattattgatagtgggaagacatatcgtccactatgattcaaaattagaatatgactgaaaattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="98569" stop="95243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98269" g_stop="98150" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="237" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95993" g_stop="95537" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="694" r_length="457" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E716235" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98269" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAGGTTAT</genome_strand>
        <mrna_strand>ATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350745" ref_strand="+" ref_description="SGN-E350745 [cTOS-7-H23]">
      <seq>aatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttattgttgtatggatattgacactttgaacttgatgaatagataggtttcctatcctattacgtacnatattattgatagtgggaagacatatcgtccactatgattcaaaattagatatgactgaaaattcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="98619" stop="95243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98319" g_stop="98150" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="287" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95993" g_stop="95542" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="738" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E350745" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98319" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAG</genome_strand>
        <mrna_strand>AATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACNATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAG-ATATGACTGAAAATTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308706" ref_strand="+" ref_description="SGN-E308706 [cLEZ-11-C8]">
      <seq>gaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttattgttgtatggatattgacactttgaacttgatgaatagataggtttcctatcctattacgtacaatattattgatagtgggaagacatatcgtccactatgattcaaaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="96179" stop="95261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95879" g_stop="95555" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E308706" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95879" e_stop="95555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTG</genome_strand>
        <mrna_strand>GAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397979" ref_strand="+" ref_description="SGN-E397979 [TUS-37-A6](-)">
      <seq>tccaaaagtgatgcccaatgatgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttagtaaaggatcatcgtccatttttttggatgttattgttgtatggatattgacactttgaacttgatgaataaagaggtttcctatcctattacgtacaatattattgataaagggaagacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="96143" stop="95289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95843" g_stop="95581" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E397979" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95843" e_stop="95581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCAC</genome_strand>
        <mrna_strand>TCCAAAAGTGATGCCCAATGATGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTAGTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAAAGAGGTTTCCTATCCTATTACGTACAATATTATTGATAAAGGGAAGACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721430" ref_strand="+" ref_description="SGN-E721430 [FC13DE08]">
      <seq>gggcgattggcggccaatcggccgaattgagggaaagcgtggacgcggtaaagagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttattgttgtatggatattgacactttgaacttgatgaatagataggtttcctatcctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99590" stop="95320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99288" g_stop="99153" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="167" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="339" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="456" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95620" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="830" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E721430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99288" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTA</genome_strand>
        <mrna_strand>GGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725141" ref_strand="+" ref_description="SGN-E725141 [FC26AG10]">
      <seq>gagggaaagcgtggacgcggtaaagagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttattgttgtatggatattgacactttgaacttgatgaatagataggtttcctatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99590" stop="95326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99291" g_stop="99153" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="311" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="428" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95623" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="799" r_length="371" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E725141" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99291" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTA</genome_strand>
        <mrna_strand>GAGGGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553760" ref_strand="+" ref_description="SGN-E553760 [cTSC-2-C17]">
      <seq>gagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtaaaatcactttttgtcaattgtatcatgcattcagtcgattcaattaattacatcgctcgtcggtctagatcaaataattgctacatgcaaatcctagagatacacatagtaagctaaagcagtatctttcaggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99567" stop="95377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99267" g_stop="99153" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="287" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="95677" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="856" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E553760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99267" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="95677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATT</genome_strand>
        <mrna_strand>GAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723782" ref_strand="+" ref_description="SGN-E723782 [FC21DF02]">
      <seq>ttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccaccacacaaataaaggtaattattgggacctccatttgcactagtagtccagaatatggcacaagtcccatatcgattcatccatatctgttcttaattaaggatcatcgtccattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99507" stop="95387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99207" g_stop="99153" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="227" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="344" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95687" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="652" r_length="308" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E723782" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99207" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACAT-CAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTT</genome_strand>
        <mrna_strand>TTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCACCACACAAATAAAGGTAATTATTGGGACCTCCATTTGCACTAGTAGTCCAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTAATTAAGGATCATCGTCCATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290880" ref_strand="+" ref_description="SGN-E290880 [cLET-10-J3]">
      <seq>ggacgcggtaaagagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99579" stop="95419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99279" g_stop="99153" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="299" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="416" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95719" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="691" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E290880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99279" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCT</genome_strand>
        <mrna_strand>GGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245279" ref_strand="+" ref_description="SGN-E245279 [cLEF-44-F14]">
      <seq>gagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99558" stop="95511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99258" g_stop="99153" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="278" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="395" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95811" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="578" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E245279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99258" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGT</genome_strand>
        <mrna_strand>GAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245334" ref_strand="+" ref_description="SGN-E245334 [cLEF-44-F2]">
      <seq>gagacgaaaaggtgaagaatgaagcaatggagataatggggttgttccaagttcttcctcgggtcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttggtaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99558" stop="95555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99258" g_stop="99153" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="278" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="395" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95855" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="534" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E245334" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99258" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAG</genome_strand>
        <mrna_strand>GAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGGTTGTTCCAAGTTCTTCCTCGGGTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGGTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273618" ref_strand="+" ref_description="SGN-E273618 [cLEN-6-K3]">
      <seq>cgcggtaaagagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99576" stop="95557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99276" g_stop="99153" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="296" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="413" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95857" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="550" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E273618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99276" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAA</genome_strand>
        <mrna_strand>CGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286530" ref_strand="+" ref_description="SGN-E286530 [cLES-12-J7]">
      <seq>agagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99568" stop="95568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99268" g_stop="99153" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="288" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="405" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95868" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="531" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E286530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99268" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGC</genome_strand>
        <mrna_strand>AGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299477" ref_strand="+" ref_description="SGN-E299477 [cLET-43-F16]">
      <seq>gcgtggacgcggtaaagagagatgggagacgaaaaggtgaacaatgaagcactggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccacgagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaagggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99583" stop="95570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99283" g_stop="99153" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="303" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="420" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95870" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="544" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E299477" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99283" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGC</genome_strand>
        <mrna_strand>GCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAACAATGAAGCACTGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAAGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235506" ref_strand="+" ref_description="SGN-E235506 [cLED-11-O14]">
      <seq>gatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99563" stop="95595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99263" g_stop="99153" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="283" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="400" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95895" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="499" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E235506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99263" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCA</genome_strand>
        <mrna_strand>GATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273798" ref_strand="+" ref_description="SGN-E273798 [cLEN-7-D6]">
      <seq>ggtaaagagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99573" stop="95613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99273" g_stop="99153" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="293" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="410" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95913" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="491" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E273798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99273" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTT</genome_strand>
        <mrna_strand>GGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397947" ref_strand="+" ref_description="SGN-E397947 [TUS-37-A6]">
      <seq>agcgtggacgcggtaaagagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcgggggcgggaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99584" stop="95621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99284" g_stop="99153" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="304" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="421" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95995" i_length="134">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95994" g_stop="95921" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="495" r_length="74" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E397947" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99284" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95994" e_stop="95921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCT</genome_strand>
        <mrna_strand>AGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG......................................................................................................................................GGGGCGGGAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282201" ref_strand="+" ref_description="SGN-E282201 [cLES-4-A19]">
      <seq>ggacgcggtaaagagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99579" stop="95658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99279" g_stop="99153" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="299" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="416" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95958" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="452" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E282201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99279" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGC</genome_strand>
        <mrna_strand>GGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289740" ref_strand="+" ref_description="SGN-E289740 [cLET-4-P19]">
      <seq>ggacgcggtaaacagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacgggacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99579" stop="95833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99279" g_stop="99153" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="299" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96133" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="412" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E289740" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99279" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACA</genome_strand>
        <mrna_strand>GGACGCGGTAAACAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGGACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228036" ref_strand="+" ref_description="SGN-E228036 [cLED-2-A2]">
      <seq>gatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99563" stop="97843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99263" g_stop="99153" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="283" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E228036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99263" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG</genome_strand>
        <mrna_strand>GATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699790" ref_strand="+" ref_description="SGN-E699790 [FA11AH07]">
      <seq>attcgcgagtgcgcacgaagtaaaggaaaatggaattccattaataaatccagagaaactctttcaatttgaagttcaattgaagaaattgaaagaagatggagagagatggcgaaggaatagtgagctcccagtcgcagagggttaacaatggtcgttcaatttcacccaatagagtccgaaccggatccgaccccttcctggtgacttgtagagtgttcagcttcgttactgcacttgttgctattctctgcattgttgttaatgtctattctgctgtccgatcctttaagcatggatatgacgtattcgatggaattttccggtgttatgctgtagtgattgcggttattgtggttgttgcggagactgaatggggatttttcatcaagttctggaaggtgttggagttttcagctggaaggggcatgctacagatctttgttgcagtgatgaccagagcttatcctgaagattatgggcaaaggaatgacctcatccttctccggaacatagctagctactttcttcttacctgtggtgcaatttacataatatcaggattgttgtgctttggatttatcaaacgtgctcgtcaggcaaaagaaatatccagggagcaagcaattaacgatcttcaggatttggagcgtcgtagagaagagcttgaagctctgttgatacaggagagggcttgagaaatagagctggcatttatggctatggcttgaagctctgttgatacaggagagggcttgagaaatagagctggcatttatggctatggcaaatcactgtcgaaatggaggagaaactttggaaaggaagctcaaatgagcgaacttgatgttcatgtgttttacctgcctttttacctatgtgagattgaaaattttcactagatgtattgcaaatatggacagttacatagaccattttcctagcaacgatatatcgtactaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="105183" stop="99515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104883" g_stop="104579" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104578" i_stop="104484" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104483" g_stop="104388" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="401" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104387" i_stop="102900" i_length="1488">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102899" g_stop="102859" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="442" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102858" i_stop="102756" i_length="103">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102755" g_stop="102638" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="560" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102637" i_stop="102098" i_length="540">
            <donor d_prob="0.072" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102097" g_stop="102017" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="641" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102016" i_stop="100140" i_length="1877">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100139" g_stop="99811" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="968" r_length="327" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E699790" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>970</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104883" e_stop="104579"/>
          <exon e_start="104483" e_stop="104388"/>
          <exon e_start="102899" e_stop="102859"/>
          <exon e_start="102755" e_stop="102638"/>
          <exon e_start="102097" e_stop="102017"/>
          <exon e_start="100139" e_stop="99811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGCGAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGACGTAAGCCCTTCCTCTACTGCCATGTATTTGTGCTAATCTGTCTCTGTAAGTGCGATACTCGGACCTTATTGTTGTTTTGATGCAAAATTTTCTAGGTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAGGTGAGTTGTGAAGTCTTAGTTTTCCTTCTGTTATTTGCTGGCATTTTTATTAATGAGGCGTTGTAATTGGAACTGTTCAAATTTCAATGCCAATACTAGTATGTGTTTGCATTTGGTTCTGCTTTATTAACAAAATCAAGCAGTAATGATTCGATTGATGATAATGTAAATGTAGTTTTGTAACATCACTCTTTGCAGATTTAACAACACAAACAATTGAGTGACATCATATAGTAATAGTAGGGAGCCACCCAAAAATGAAGGGGCTACTGGCAAATGCTATTGGCAATACCAATGCTTACAAAAAGAATAAAGGAAAAAAGACTTATACAGTGAGCATAAGTAGTTTCTGTCTGCTCTTCTCCTCCGAAGGTTGGAAGATTTGCGAGCCATGTTGTGTTGTTAGGATGATTTGTGACTAACGAGGAGATTATTTTGTCTTAATTTGTTCATGAACTTGTCATAAGTGATCATTCTGTTTTCCGTAATCCAGTTTCTTCTGTCTCTTACCTCTTCAGAAGCTCAGTCTCCCATTCGGCAATAGAGCTAACCCATCTGTATAGAAAATTATAATGTGTCTTTTTGCCAGATCGTCAAGCTTACTTTCCGTATACTAACTTTTGGACTGGAACATACAAATTGTTTCCCTTGATTCAACATAGTCATGAACCCAAACACTCAAAAGGAGGGCATAGGGCTCAAAGATTAGATCGATGTTACGACCTATCAAAAACAAAAAGTTAGATTGATAATATTCTTGGGGTAAAGTCGAGTTTATGGTTTGACTGGAGTTATTAAGCAAGAATGCCAAGTTTATCTAACACAGAGAAACATAGCTAAGAAGTCTAAACGACATGCAACACTTAGAGATTCGGGAGTTTAAGGATGAACCAATTTGGTCTTTTAGGCTATATAATATTGGAAATGTCATACTATACTATCATTCATTTAGATAGATATTTGAACAATATTAATGTTTAATATTTAGGGAAAACATGGAATAAAAATAAGGAGCACTAGAATGAACAAACCATGTGAAAAATATCCTCGGTTGACCAGTAATTAGCAGTTTGTTATGATGCAATTGTTTGTCTGCTGCAGCAAAAGAGGTGTTTTCCTCCTTTCAGTTTCTGTCCCTTTAATGCTCAAACTCATACTCAGAAGCATCCCCCATATTATGCCATTTTTGTCTTCTTCTATACTCTTTTCATCATCAGTTTCATCATTAACCTTTATAGTCTCGTATTAAAGCTAATTAATCCAGATATAGCTTAATTATTTTAGTGTTCCAGCAGTTTTTCTTCTCATAGAACAACTGGAAAGGTTCCACTTTTTCTTAGGGGCTAAACATTAAGAATAATATCCTTCTATGTTGTATGCAGTATTATTATTATGTGCTTTCTGGTCGTTTGCTCATTTTGACCCGATACCTTTGACAATAAATAAATCCCAATAAACTGATGCCAAATTTCAATGACTTTTGAGTAGGTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTTGTAAGCAAAACTTTTGGCTTGCTGAGCTAGTTAAAATCAGACTTAACAAAATAGTTAGTTTTTAGGGGGGGGAACTGACTCTCCTCTTTCTGGTTTTTTCTAGTGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGAACATAGCTAGCTACTTTCTTCTTACCTGTGGTGCAATTTACATAATATCAGTAAGTTCAGGAAACCATCAGGTTGCTACATGACAATCATTTGTCTGTCAGGGTCCATGCTGTTGTAGCTTGTATATGGTATGACACAATCCTGAAGAGTATGATGTGTGGCCTTGCTTCTCTTGGTCCCCTCCCACCTCTCGTGGAGGCAGTAAATATGAATATTTATAACAGATAGCCTTTGACTTTAAGACAGGAGAATTCCTTCCAAGAATGCAAGCAGTGGGCACCTGTCAATTAGGCTATCAGAAGTTATGCTAGATGGTCTTAAACATCATTTGTTTGCATGACCATGTAAATCTTAAGCGTGTTTACTAGGTCTCCATGATATACAGAGTGCTGCTAAAGATTACAGCCTGTAGTTTGATTGCCTGCATTCTGTGCCATTCTTTTGAACTTCCTTTTTCTTGTATTTGAGCACGAGGGCTTGCTTCTGACTGCACACATGCTACTAAGATCCATCTTGTTGAGTATTTTTGGGGTACCATATGGTACAATAGACTTTAACTTTGTTTTTTTCTTGACATATGTTACTTGTAGGGATTGTTGTGCTTTGGATTTATCAAACGTGCTCGTCAGGCAAAAGAAATATCCAGGGAGCAAGCAATTAACGATCTTCAGGTAATCCATGATATCTTATTACATGCTTGTCCTGTTGGAAGCAAACCTTGAGCTGAAAACCAGAGGAAGAGTTAGATATGTGATGCTTCTCCAGGCCTTACACGGGTCTCACTCTCTAAATCTGTTCTTGTTTTTCTGTGTCTTCTCTGGTACTCTGGTTTACTGCTGCTTCCACTCACATCTCCAAACAGTATGTACCATCCAACCTTCTGAATTATTAAGCTTAAAACCCTAACATTACTCTCTGTTAGAGACGATATGAAAAGAGAAAAGGTGGACAGAGAACTCGAGTTTCATAACCTTCTTGTCAGGTCCATATCTAGATTAAGCTTACAACTGGATGAAAGTAGATTTGGTTCAGAGGTTTTCTGTTGTAAAAAATTAAAATGGTGCATGCTTATAGCCAATTTTGCAAATATCACCTGTTGTGATATAACTAGCAACTATAACTGGGCCATACTCTACCATTAAATTTCGATTCACAAGCTGTACTTTGCAAGAGTACCTCTCAATAATTGGTATGAGAGACAGCAAGGCATAGCTAAAACGACAAGACTTCAAAAAGTCAAACGTGTTCACATTAAGCAGTTGGGTTGTATAATTTTTTTACTGTTGTCGATATGTGTTTATCTCATTCCTTGGTGGCTGGTTGTCATTGTAACTTTGATAATTTGGGCAAAGAAAAGTAGCATAGAATGTGGGTAGTTAGACAGACATTACATTTTATTGAAATCAGAGGCAACTATTTGTGCAAGAGAGGAGATTTTTGGTTTCAGGGATTCCTGGACGAACTTCTAGGTAAATAATATTGCAGATAAAGAGTTTTTGGAATTGTATCTAAACAAATGCTGGTTCAGCCAGTAGGTGCTATTTTTTAATGAATCTGGTGTCCAAGTGAGGTGATAGTGTTGCACATTCCATTTTGGTTTGAATCAGAGGCAAATTATTTGTTCAAGAGGGGAGATATGGATCCAGGGATTCCTGGAAAGCCTTTTTGGACAGTGATATTGGAGATGAAAGGTTTTCAGAAATCTTTCTAATTACATTCTGGTTAAGCCAGTAGGTGATAATATCCTTTAAAAATAATAAAGAAATTAGCAGTGGTGTCCAAGCTAGGTGAAATTGTTTTAGTGGAGATTCAGACTTGGGATCTGCAGGTTGTTGCTCCTACACCTCAACCACTTATGTCTCCTCTTCTCGACCAAGGTTATAGTGTACTCTTAGACTTTACATTAGAAAAAATTAATGATTAGTAATAATTAAAAGGACATCTAATATGGCATGTATTCCTGAGCAAAGCATGTGTAGTTAAACTTGCATGCATTTTAGCTGGAAACGGGGCTCATCTCTCTGTCATAACTCATAGGACATAATTAGGCACTAGTATTTCTGCAGAACGTTTTGAATAAGTGATACTCAATAGCAGGGGTTACATGTCTCCACCCCCTGCCCTCTCTGGAAGTCTCCTGTCCATGTCCCTGCGCCTCCAACTACCCCAAGGGAGCAATCTCGTTTCTTTGCTTATTTGATGTCATTCAGTTTATAGCATAATTACATTGTGAAAAGTTGTTTTCCAAAGTCTATTACATGAGAATTACAATGTTTTTGGTTATGCTTCTCATTTTTTAAATAATGGTAGTAAACCCTTAATACCTGCCTTCCATATATTCGGATATGCTAATCCCTAAAGACTTGCAGGAAAAAAAAATATCTGTTCTCCCCCATTTCCCCTTTCACAACTCCAGTTGCATCATTTGAGTATGAATTTCAAACTATTGTTTCTTGACCTGCTCCTATTTCCATCGTGGATGACTTTGACTCATCTGTTTATCTCCTTCTGACTATTCCTGAAAACATATTAATGATTATAATTTCAGGATTTGGAGCGTCGTAGAGAAGAGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCAAATCACTGTCGAAATTGAGGAGAAAACTTGGAAAGGAAAGCTCAAATGAGCGAACTTGATGTTCATGTGTTTTACCTGCCTTTTTACCTATGTGAGATTGAAAATTTTCACTAGATGTATTGCAAATATGTACAGTTACATAGACCATTTTCCTAGCAACAGATATATCGTACTAAACCAG</genome_strand>
        <mrna_strand>ATTCGCGAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGAC...............................................................................................GTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTT.......................................................................................................TGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGAACATAGCTAGCTACTTTCTTCTTACCTGTGGTGCAATTTACATAATATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGTTGTGCTTTGGATTTATCAAACGTGCTCGTCAGGCAAAAGAAATATCCAGGGAGCAAGCAATTAACGATCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGAGCGTCGTAGAGAAGAGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCAAATCACTGTCGAAATGGAGGAGAAACTTTGGAAAGG-AAGCTCAAATGAGCGAACTTGATGTTCATGTGTTTTACCTGCCTTTTTACCTATGTGAGATTGAAAATTTTCACTAGATGTATTGCAAATATGGACAGTTACATAGACCATTTTCCTAGCAAC-GATATATCGTACTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700346" ref_strand="+" ref_description="SGN-E700346 [FA12DD12]">
      <seq>ttctcattcgcgagtgcgcacgaagtaaaggaaaatggaattccattaataaatccagagaaactctttcaatttgaagttcaattgaagaaattgaaagaagatggagagagatggcgaaggaatagtgagctcccagtcgcagagggttaacaatggtcgttcaatttcacccaatagagtccgaaccggatccgaccccttcctggtgacttgtagagtgttcagcttcgttactgcacttgttgctattctctgcattgttgttaatgtctattctgctgtccgatcctttaagcatggatatgacgtattcgatggaattttccggtgttatgctgtagtgattgcggttattgtggttgttgcggagactgaatggggatttttcatcaagttctggaaggtgttggagttttcagctggaaggggcatgctacagatctttgttgcagtgatgaccagagcttatcctgaagattatgggcaaaggaatgacctcatccttctccggaacatagctagctactttcttcttacctgtggtgcaatttacataatatcaggattgttgtgctttggatttatcaaacgtgctcgtcaggcaaaagaaatatccagggagcaagcaattaacgatcttcaggatttggagcgtcgtagagaagagcttgaagctctgttgatacaggagagggcttgagaaatagagctggcatttatggctatggcttgaagctctgttgatacaggagagggcttgagaaatagagctggcatttatggctatggcaaatcactgtcgaaattgaggagaaaacttggaaaggaaagctcaaatgagcgaacttgatgttcatggtgttttacctgcctttttacctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="105188" stop="99601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104888" g_stop="104579" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104578" i_stop="104484" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104483" g_stop="104388" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="406" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104387" i_stop="102900" i_length="1488">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102899" g_stop="102859" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="447" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102858" i_stop="102756" i_length="103">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102755" g_stop="102638" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="565" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102637" i_stop="102098" i_length="540">
            <donor d_prob="0.072" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102097" g_stop="102017" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="646" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102016" i_stop="100140" i_length="1877">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100139" g_stop="99901" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="886" r_length="240" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E700346" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104888" e_stop="104579"/>
          <exon e_start="104483" e_stop="104388"/>
          <exon e_start="102899" e_stop="102859"/>
          <exon e_start="102755" e_stop="102638"/>
          <exon e_start="102097" e_stop="102017"/>
          <exon e_start="100139" e_stop="99901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATTCGCGAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGACGTAAGCCCTTCCTCTACTGCCATGTATTTGTGCTAATCTGTCTCTGTAAGTGCGATACTCGGACCTTATTGTTGTTTTGATGCAAAATTTTCTAGGTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAGGTGAGTTGTGAAGTCTTAGTTTTCCTTCTGTTATTTGCTGGCATTTTTATTAATGAGGCGTTGTAATTGGAACTGTTCAAATTTCAATGCCAATACTAGTATGTGTTTGCATTTGGTTCTGCTTTATTAACAAAATCAAGCAGTAATGATTCGATTGATGATAATGTAAATGTAGTTTTGTAACATCACTCTTTGCAGATTTAACAACACAAACAATTGAGTGACATCATATAGTAATAGTAGGGAGCCACCCAAAAATGAAGGGGCTACTGGCAAATGCTATTGGCAATACCAATGCTTACAAAAAGAATAAAGGAAAAAAGACTTATACAGTGAGCATAAGTAGTTTCTGTCTGCTCTTCTCCTCCGAAGGTTGGAAGATTTGCGAGCCATGTTGTGTTGTTAGGATGATTTGTGACTAACGAGGAGATTATTTTGTCTTAATTTGTTCATGAACTTGTCATAAGTGATCATTCTGTTTTCCGTAATCCAGTTTCTTCTGTCTCTTACCTCTTCAGAAGCTCAGTCTCCCATTCGGCAATAGAGCTAACCCATCTGTATAGAAAATTATAATGTGTCTTTTTGCCAGATCGTCAAGCTTACTTTCCGTATACTAACTTTTGGACTGGAACATACAAATTGTTTCCCTTGATTCAACATAGTCATGAACCCAAACACTCAAAAGGAGGGCATAGGGCTCAAAGATTAGATCGATGTTACGACCTATCAAAAACAAAAAGTTAGATTGATAATATTCTTGGGGTAAAGTCGAGTTTATGGTTTGACTGGAGTTATTAAGCAAGAATGCCAAGTTTATCTAACACAGAGAAACATAGCTAAGAAGTCTAAACGACATGCAACACTTAGAGATTCGGGAGTTTAAGGATGAACCAATTTGGTCTTTTAGGCTATATAATATTGGAAATGTCATACTATACTATCATTCATTTAGATAGATATTTGAACAATATTAATGTTTAATATTTAGGGAAAACATGGAATAAAAATAAGGAGCACTAGAATGAACAAACCATGTGAAAAATATCCTCGGTTGACCAGTAATTAGCAGTTTGTTATGATGCAATTGTTTGTCTGCTGCAGCAAAAGAGGTGTTTTCCTCCTTTCAGTTTCTGTCCCTTTAATGCTCAAACTCATACTCAGAAGCATCCCCCATATTATGCCATTTTTGTCTTCTTCTATACTCTTTTCATCATCAGTTTCATCATTAACCTTTATAGTCTCGTATTAAAGCTAATTAATCCAGATATAGCTTAATTATTTTAGTGTTCCAGCAGTTTTTCTTCTCATAGAACAACTGGAAAGGTTCCACTTTTTCTTAGGGGCTAAACATTAAGAATAATATCCTTCTATGTTGTATGCAGTATTATTATTATGTGCTTTCTGGTCGTTTGCTCATTTTGACCCGATACCTTTGACAATAAATAAATCCCAATAAACTGATGCCAAATTTCAATGACTTTTGAGTAGGTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTTGTAAGCAAAACTTTTGGCTTGCTGAGCTAGTTAAAATCAGACTTAACAAAATAGTTAGTTTTTAGGGGGGGGAACTGACTCTCCTCTTTCTGGTTTTTTCTAGTGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGAACATAGCTAGCTACTTTCTTCTTACCTGTGGTGCAATTTACATAATATCAGTAAGTTCAGGAAACCATCAGGTTGCTACATGACAATCATTTGTCTGTCAGGGTCCATGCTGTTGTAGCTTGTATATGGTATGACACAATCCTGAAGAGTATGATGTGTGGCCTTGCTTCTCTTGGTCCCCTCCCACCTCTCGTGGAGGCAGTAAATATGAATATTTATAACAGATAGCCTTTGACTTTAAGACAGGAGAATTCCTTCCAAGAATGCAAGCAGTGGGCACCTGTCAATTAGGCTATCAGAAGTTATGCTAGATGGTCTTAAACATCATTTGTTTGCATGACCATGTAAATCTTAAGCGTGTTTACTAGGTCTCCATGATATACAGAGTGCTGCTAAAGATTACAGCCTGTAGTTTGATTGCCTGCATTCTGTGCCATTCTTTTGAACTTCCTTTTTCTTGTATTTGAGCACGAGGGCTTGCTTCTGACTGCACACATGCTACTAAGATCCATCTTGTTGAGTATTTTTGGGGTACCATATGGTACAATAGACTTTAACTTTGTTTTTTTCTTGACATATGTTACTTGTAGGGATTGTTGTGCTTTGGATTTATCAAACGTGCTCGTCAGGCAAAAGAAATATCCAGGGAGCAAGCAATTAACGATCTTCAGGTAATCCATGATATCTTATTACATGCTTGTCCTGTTGGAAGCAAACCTTGAGCTGAAAACCAGAGGAAGAGTTAGATATGTGATGCTTCTCCAGGCCTTACACGGGTCTCACTCTCTAAATCTGTTCTTGTTTTTCTGTGTCTTCTCTGGTACTCTGGTTTACTGCTGCTTCCACTCACATCTCCAAACAGTATGTACCATCCAACCTTCTGAATTATTAAGCTTAAAACCCTAACATTACTCTCTGTTAGAGACGATATGAAAAGAGAAAAGGTGGACAGAGAACTCGAGTTTCATAACCTTCTTGTCAGGTCCATATCTAGATTAAGCTTACAACTGGATGAAAGTAGATTTGGTTCAGAGGTTTTCTGTTGTAAAAAATTAAAATGGTGCATGCTTATAGCCAATTTTGCAAATATCACCTGTTGTGATATAACTAGCAACTATAACTGGGCCATACTCTACCATTAAATTTCGATTCACAAGCTGTACTTTGCAAGAGTACCTCTCAATAATTGGTATGAGAGACAGCAAGGCATAGCTAAAACGACAAGACTTCAAAAAGTCAAACGTGTTCACATTAAGCAGTTGGGTTGTATAATTTTTTTACTGTTGTCGATATGTGTTTATCTCATTCCTTGGTGGCTGGTTGTCATTGTAACTTTGATAATTTGGGCAAAGAAAAGTAGCATAGAATGTGGGTAGTTAGACAGACATTACATTTTATTGAAATCAGAGGCAACTATTTGTGCAAGAGAGGAGATTTTTGGTTTCAGGGATTCCTGGACGAACTTCTAGGTAAATAATATTGCAGATAAAGAGTTTTTGGAATTGTATCTAAACAAATGCTGGTTCAGCCAGTAGGTGCTATTTTTTAATGAATCTGGTGTCCAAGTGAGGTGATAGTGTTGCACATTCCATTTTGGTTTGAATCAGAGGCAAATTATTTGTTCAAGAGGGGAGATATGGATCCAGGGATTCCTGGAAAGCCTTTTTGGACAGTGATATTGGAGATGAAAGGTTTTCAGAAATCTTTCTAATTACATTCTGGTTAAGCCAGTAGGTGATAATATCCTTTAAAAATAATAAAGAAATTAGCAGTGGTGTCCAAGCTAGGTGAAATTGTTTTAGTGGAGATTCAGACTTGGGATCTGCAGGTTGTTGCTCCTACACCTCAACCACTTATGTCTCCTCTTCTCGACCAAGGTTATAGTGTACTCTTAGACTTTACATTAGAAAAAATTAATGATTAGTAATAATTAAAAGGACATCTAATATGGCATGTATTCCTGAGCAAAGCATGTGTAGTTAAACTTGCATGCATTTTAGCTGGAAACGGGGCTCATCTCTCTGTCATAACTCATAGGACATAATTAGGCACTAGTATTTCTGCAGAACGTTTTGAATAAGTGATACTCAATAGCAGGGGTTACATGTCTCCACCCCCTGCCCTCTCTGGAAGTCTCCTGTCCATGTCCCTGCGCCTCCAACTACCCCAAGGGAGCAATCTCGTTTCTTTGCTTATTTGATGTCATTCAGTTTATAGCATAATTACATTGTGAAAAGTTGTTTTCCAAAGTCTATTACATGAGAATTACAATGTTTTTGGTTATGCTTCTCATTTTTTAAATAATGGTAGTAAACCCTTAATACCTGCCTTCCATATATTCGGATATGCTAATCCCTAAAGACTTGCAGGAAAAAAAAATATCTGTTCTCCCCCATTTCCCCTTTCACAACTCCAGTTGCATCATTTGAGTATGAATTTCAAACTATTGTTTCTTGACCTGCTCCTATTTCCATCGTGGATGACTTTGACTCATCTGTTTATCTCCTTCTGACTATTCCTGAAAACATATTAATGATTATAATTTCAGGATTTGGAGCGTCGTAGAGAAGAGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCAAATCACTGTCGAAATTGAGGAGAAAACTTGGAAAGGAAAGCTCAAATGAGCGAACTTGATGTTCAT-GTGTTTTACCTGCCTTTTTACCTAT</genome_strand>
        <mrna_strand>TTCTCATTCGCGAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGAC...............................................................................................GTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTT.......................................................................................................TGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGAACATAGCTAGCTACTTTCTTCTTACCTGTGGTGCAATTTACATAATATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGTTGTGCTTTGGATTTATCAAACGTGCTCGTCAGGCAAAAGAAATATCCAGGGAGCAAGCAATTAACGATCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGAGCGTCGTAGAGAAGAGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCAAATCACTGTCGAAATTGAGGAGAAAACTTGGAAAGGAAAGCTCAAATGAGCGAACTTGATGTTCATGGTGTTTTACCTGCCTTTTTACCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687968" ref_strand="+" ref_description="SGN-E687968 [T3_tus_81_N19]">
      <seq>gagattcaaaacctcctgaaatcctccgccgatattctcattcgcgagtgcgcacgaagtaaaggaaaatggaattccattaataaatccagagaaactctttcaatttgaagttcaattgaagaaattgaaagaagatggagagagatggcgaaggaatagtgagctcccagtcgcagagggttaacaatggtcgttcaatttcacccaatagagtccgaaccggatccgaccccttcctggtgacttgtagagtgttcagcttcgttactgcacttgttgctattctctgcattgttgttaatgtctattctgctgtccgatcctttaagcatggatatgacgtattcgatggaattttccggtgttatgctgtagtgattgcggttattgtggttgttgcggagactgaatggggatttttcatcaagttctggaaggtgttggagttttcagctggaaggggcatgctacagatctttgttgcagtgatgaccagagcttatcctgaagattatgggcaaaggaatgacctcatccttctccggaacatagctngctactttcttcttacctgtggtgcaatttacataatatcaggattgttgtgctttggatttatcaaacgtgctcgtcaggcaaaagaaatatccngggagcaagcaattaacgatcttcaggatttggagcgtcgtaaagaagagcttgaagctctgttgatacaggagagggcttgaaaaatagagctggcatttatggctatggcttgaagctctgttgatacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="105222" stop="99734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104922" g_stop="104579" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104578" i_stop="104484" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104483" g_stop="104388" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="440" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104387" i_stop="102900" i_length="1488">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102899" g_stop="102859" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="481" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102858" i_stop="102756" i_length="103">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102755" g_stop="102638" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="599" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102637" i_stop="102098" i_length="540">
            <donor d_prob="0.072" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102097" g_stop="102017" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="680" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102016" i_stop="100140" i_length="1877">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100139" g_stop="100034" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="786" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E687968" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104922" e_stop="104579"/>
          <exon e_start="104483" e_stop="104388"/>
          <exon e_start="102899" e_stop="102859"/>
          <exon e_start="102755" e_stop="102638"/>
          <exon e_start="102097" e_stop="102017"/>
          <exon e_start="100139" e_stop="100034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTCAAAACCTCCTGAAATCCTCCGCCGATATTCTCATTCGCGAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGACGTAAGCCCTTCCTCTACTGCCATGTATTTGTGCTAATCTGTCTCTGTAAGTGCGATACTCGGACCTTATTGTTGTTTTGATGCAAAATTTTCTAGGTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAGGTGAGTTGTGAAGTCTTAGTTTTCCTTCTGTTATTTGCTGGCATTTTTATTAATGAGGCGTTGTAATTGGAACTGTTCAAATTTCAATGCCAATACTAGTATGTGTTTGCATTTGGTTCTGCTTTATTAACAAAATCAAGCAGTAATGATTCGATTGATGATAATGTAAATGTAGTTTTGTAACATCACTCTTTGCAGATTTAACAACACAAACAATTGAGTGACATCATATAGTAATAGTAGGGAGCCACCCAAAAATGAAGGGGCTACTGGCAAATGCTATTGGCAATACCAATGCTTACAAAAAGAATAAAGGAAAAAAGACTTATACAGTGAGCATAAGTAGTTTCTGTCTGCTCTTCTCCTCCGAAGGTTGGAAGATTTGCGAGCCATGTTGTGTTGTTAGGATGATTTGTGACTAACGAGGAGATTATTTTGTCTTAATTTGTTCATGAACTTGTCATAAGTGATCATTCTGTTTTCCGTAATCCAGTTTCTTCTGTCTCTTACCTCTTCAGAAGCTCAGTCTCCCATTCGGCAATAGAGCTAACCCATCTGTATAGAAAATTATAATGTGTCTTTTTGCCAGATCGTCAAGCTTACTTTCCGTATACTAACTTTTGGACTGGAACATACAAATTGTTTCCCTTGATTCAACATAGTCATGAACCCAAACACTCAAAAGGAGGGCATAGGGCTCAAAGATTAGATCGATGTTACGACCTATCAAAAACAAAAAGTTAGATTGATAATATTCTTGGGGTAAAGTCGAGTTTATGGTTTGACTGGAGTTATTAAGCAAGAATGCCAAGTTTATCTAACACAGAGAAACATAGCTAAGAAGTCTAAACGACATGCAACACTTAGAGATTCGGGAGTTTAAGGATGAACCAATTTGGTCTTTTAGGCTATATAATATTGGAAATGTCATACTATACTATCATTCATTTAGATAGATATTTGAACAATATTAATGTTTAATATTTAGGGAAAACATGGAATAAAAATAAGGAGCACTAGAATGAACAAACCATGTGAAAAATATCCTCGGTTGACCAGTAATTAGCAGTTTGTTATGATGCAATTGTTTGTCTGCTGCAGCAAAAGAGGTGTTTTCCTCCTTTCAGTTTCTGTCCCTTTAATGCTCAAACTCATACTCAGAAGCATCCCCCATATTATGCCATTTTTGTCTTCTTCTATACTCTTTTCATCATCAGTTTCATCATTAACCTTTATAGTCTCGTATTAAAGCTAATTAATCCAGATATAGCTTAATTATTTTAGTGTTCCAGCAGTTTTTCTTCTCATAGAACAACTGGAAAGGTTCCACTTTTTCTTAGGGGCTAAACATTAAGAATAATATCCTTCTATGTTGTATGCAGTATTATTATTATGTGCTTTCTGGTCGTTTGCTCATTTTGACCCGATACCTTTGACAATAAATAAATCCCAATAAACTGATGCCAAATTTCAATGACTTTTGAGTAGGTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTTGTAAGCAAAACTTTTGGCTTGCTGAGCTAGTTAAAATCAGACTTAACAAAATAGTTAGTTTTTAGGGGGGGGAACTGACTCTCCTCTTTCTGGTTTTTTCTAGTGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGAACATAGCTAGCTACTTTCTTCTTACCTGTGGTGCAATTTACATAATATCAGTAAGTTCAGGAAACCATCAGGTTGCTACATGACAATCATTTGTCTGTCAGGGTCCATGCTGTTGTAGCTTGTATATGGTATGACACAATCCTGAAGAGTATGATGTGTGGCCTTGCTTCTCTTGGTCCCCTCCCACCTCTCGTGGAGGCAGTAAATATGAATATTTATAACAGATAGCCTTTGACTTTAAGACAGGAGAATTCCTTCCAAGAATGCAAGCAGTGGGCACCTGTCAATTAGGCTATCAGAAGTTATGCTAGATGGTCTTAAACATCATTTGTTTGCATGACCATGTAAATCTTAAGCGTGTTTACTAGGTCTCCATGATATACAGAGTGCTGCTAAAGATTACAGCCTGTAGTTTGATTGCCTGCATTCTGTGCCATTCTTTTGAACTTCCTTTTTCTTGTATTTGAGCACGAGGGCTTGCTTCTGACTGCACACATGCTACTAAGATCCATCTTGTTGAGTATTTTTGGGGTACCATATGGTACAATAGACTTTAACTTTGTTTTTTTCTTGACATATGTTACTTGTAGGGATTGTTGTGCTTTGGATTTATCAAACGTGCTCGTCAGGCAAAAGAAATATCCAGGGAGCAAGCAATTAACGATCTTCAGGTAATCCATGATATCTTATTACATGCTTGTCCTGTTGGAAGCAAACCTTGAGCTGAAAACCAGAGGAAGAGTTAGATATGTGATGCTTCTCCAGGCCTTACACGGGTCTCACTCTCTAAATCTGTTCTTGTTTTTCTGTGTCTTCTCTGGTACTCTGGTTTACTGCTGCTTCCACTCACATCTCCAAACAGTATGTACCATCCAACCTTCTGAATTATTAAGCTTAAAACCCTAACATTACTCTCTGTTAGAGACGATATGAAAAGAGAAAAGGTGGACAGAGAACTCGAGTTTCATAACCTTCTTGTCAGGTCCATATCTAGATTAAGCTTACAACTGGATGAAAGTAGATTTGGTTCAGAGGTTTTCTGTTGTAAAAAATTAAAATGGTGCATGCTTATAGCCAATTTTGCAAATATCACCTGTTGTGATATAACTAGCAACTATAACTGGGCCATACTCTACCATTAAATTTCGATTCACAAGCTGTACTTTGCAAGAGTACCTCTCAATAATTGGTATGAGAGACAGCAAGGCATAGCTAAAACGACAAGACTTCAAAAAGTCAAACGTGTTCACATTAAGCAGTTGGGTTGTATAATTTTTTTACTGTTGTCGATATGTGTTTATCTCATTCCTTGGTGGCTGGTTGTCATTGTAACTTTGATAATTTGGGCAAAGAAAAGTAGCATAGAATGTGGGTAGTTAGACAGACATTACATTTTATTGAAATCAGAGGCAACTATTTGTGCAAGAGAGGAGATTTTTGGTTTCAGGGATTCCTGGACGAACTTCTAGGTAAATAATATTGCAGATAAAGAGTTTTTGGAATTGTATCTAAACAAATGCTGGTTCAGCCAGTAGGTGCTATTTTTTAATGAATCTGGTGTCCAAGTGAGGTGATAGTGTTGCACATTCCATTTTGGTTTGAATCAGAGGCAAATTATTTGTTCAAGAGGGGAGATATGGATCCAGGGATTCCTGGAAAGCCTTTTTGGACAGTGATATTGGAGATGAAAGGTTTTCAGAAATCTTTCTAATTACATTCTGGTTAAGCCAGTAGGTGATAATATCCTTTAAAAATAATAAAGAAATTAGCAGTGGTGTCCAAGCTAGGTGAAATTGTTTTAGTGGAGATTCAGACTTGGGATCTGCAGGTTGTTGCTCCTACACCTCAACCACTTATGTCTCCTCTTCTCGACCAAGGTTATAGTGTACTCTTAGACTTTACATTAGAAAAAATTAATGATTAGTAATAATTAAAAGGACATCTAATATGGCATGTATTCCTGAGCAAAGCATGTGTAGTTAAACTTGCATGCATTTTAGCTGGAAACGGGGCTCATCTCTCTGTCATAACTCATAGGACATAATTAGGCACTAGTATTTCTGCAGAACGTTTTGAATAAGTGATACTCAATAGCAGGGGTTACATGTCTCCACCCCCTGCCCTCTCTGGAAGTCTCCTGTCCATGTCCCTGCGCCTCCAACTACCCCAAGGGAGCAATCTCGTTTCTTTGCTTATTTGATGTCATTCAGTTTATAGCATAATTACATTGTGAAAAGTTGTTTTCCAAAGTCTATTACATGAGAATTACAATGTTTTTGGTTATGCTTCTCATTTTTTAAATAATGGTAGTAAACCCTTAATACCTGCCTTCCATATATTCGGATATGCTAATCCCTAAAGACTTGCAGGAAAAAAAAATATCTGTTCTCCCCCATTTCCCCTTTCACAACTCCAGTTGCATCATTTGAGTATGAATTTCAAACTATTGTTTCTTGACCTGCTCCTATTTCCATCGTGGATGACTTTGACTCATCTGTTTATCTCCTTCTGACTATTCCTGAAAACATATTAATGATTATAATTTCAGGATTTGGAGCGTCGTAGAGAAGAGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCTTGAAGCTCTGTTGATACAG</genome_strand>
        <mrna_strand>GAGATTCAAAACCTCCTGAAATCCTCCGCCGATATTCTCATTCGCGAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGAC...............................................................................................GTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTT.......................................................................................................TGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGAACATAGCTNGCTACTTTCTTCTTACCTGTGGTGCAATTTACATAATATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGTTGTGCTTTGGATTTATCAAACGTGCTCGTCAGGCAAAAGAAATATCCNGGGAGCAAGCAATTAACGATCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGAGCGTCGTAAAGAAGAGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAAAAATAGAGCTGGCATTTATGGCTATGGCTTGAAGCTCTGTTGATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328512" ref_strand="+" ref_description="SGN-E328512 [cTOC-23-A2]">
      <seq>agattcaaaacctcctgaaatcctccgccgatattctcattcgctagtgcgcacgaagtaaaggaaaatggaattccattaataaatccagagaaactctttcaatttgaagttcaattgaagaaattgaaagaagatggagagagatggcgaaggaatagtgagctcccagtcgcagagggttaacaatggtcgttcaatttcacccaatagagtccgaaccggatccgaccccttcctggtgacttgtagagtgttcagcttcgttactgcacttgttgctattctctgcattgttgttaatgtctattctgctgtccgatcctttaagcatggatatgacgtattcgatggaattttccggtgttatgctgtagtgattgcggttattgtggttgttgcggagactgaatggggatttttcatcaagttctggaaggtgttggagttttcagctggaaggggcatgctacagatctttgttgcagtgatgaccagagcttatcctgaagattatgggcaaaggaatgacctcatccttctccgggacatagctagctactttcttcttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="105221" stop="102361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104921" g_stop="104579" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104578" i_stop="104484" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104483" g_stop="104388" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="439" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104387" i_stop="102900" i_length="1488">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102899" g_stop="102859" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="480" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102858" i_stop="102756" i_length="103">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102755" g_stop="102661" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="575" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E328512" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104921" e_stop="104579"/>
          <exon e_start="104483" e_stop="104388"/>
          <exon e_start="102899" e_stop="102859"/>
          <exon e_start="102755" e_stop="102661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCAAAACCTCCTGAAATCCTCCGCCGATATTCTCATTCGCGAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGACGTAAGCCCTTCCTCTACTGCCATGTATTTGTGCTAATCTGTCTCTGTAAGTGCGATACTCGGACCTTATTGTTGTTTTGATGCAAAATTTTCTAGGTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAGGTGAGTTGTGAAGTCTTAGTTTTCCTTCTGTTATTTGCTGGCATTTTTATTAATGAGGCGTTGTAATTGGAACTGTTCAAATTTCAATGCCAATACTAGTATGTGTTTGCATTTGGTTCTGCTTTATTAACAAAATCAAGCAGTAATGATTCGATTGATGATAATGTAAATGTAGTTTTGTAACATCACTCTTTGCAGATTTAACAACACAAACAATTGAGTGACATCATATAGTAATAGTAGGGAGCCACCCAAAAATGAAGGGGCTACTGGCAAATGCTATTGGCAATACCAATGCTTACAAAAAGAATAAAGGAAAAAAGACTTATACAGTGAGCATAAGTAGTTTCTGTCTGCTCTTCTCCTCCGAAGGTTGGAAGATTTGCGAGCCATGTTGTGTTGTTAGGATGATTTGTGACTAACGAGGAGATTATTTTGTCTTAATTTGTTCATGAACTTGTCATAAGTGATCATTCTGTTTTCCGTAATCCAGTTTCTTCTGTCTCTTACCTCTTCAGAAGCTCAGTCTCCCATTCGGCAATAGAGCTAACCCATCTGTATAGAAAATTATAATGTGTCTTTTTGCCAGATCGTCAAGCTTACTTTCCGTATACTAACTTTTGGACTGGAACATACAAATTGTTTCCCTTGATTCAACATAGTCATGAACCCAAACACTCAAAAGGAGGGCATAGGGCTCAAAGATTAGATCGATGTTACGACCTATCAAAAACAAAAAGTTAGATTGATAATATTCTTGGGGTAAAGTCGAGTTTATGGTTTGACTGGAGTTATTAAGCAAGAATGCCAAGTTTATCTAACACAGAGAAACATAGCTAAGAAGTCTAAACGACATGCAACACTTAGAGATTCGGGAGTTTAAGGATGAACCAATTTGGTCTTTTAGGCTATATAATATTGGAAATGTCATACTATACTATCATTCATTTAGATAGATATTTGAACAATATTAATGTTTAATATTTAGGGAAAACATGGAATAAAAATAAGGAGCACTAGAATGAACAAACCATGTGAAAAATATCCTCGGTTGACCAGTAATTAGCAGTTTGTTATGATGCAATTGTTTGTCTGCTGCAGCAAAAGAGGTGTTTTCCTCCTTTCAGTTTCTGTCCCTTTAATGCTCAAACTCATACTCAGAAGCATCCCCCATATTATGCCATTTTTGTCTTCTTCTATACTCTTTTCATCATCAGTTTCATCATTAACCTTTATAGTCTCGTATTAAAGCTAATTAATCCAGATATAGCTTAATTATTTTAGTGTTCCAGCAGTTTTTCTTCTCATAGAACAACTGGAAAGGTTCCACTTTTTCTTAGGGGCTAAACATTAAGAATAATATCCTTCTATGTTGTATGCAGTATTATTATTATGTGCTTTCTGGTCGTTTGCTCATTTTGACCCGATACCTTTGACAATAAATAAATCCCAATAAACTGATGCCAAATTTCAATGACTTTTGAGTAGGTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTTGTAAGCAAAACTTTTGGCTTGCTGAGCTAGTTAAAATCAGACTTAACAAAATAGTTAGTTTTTAGGGGGGGGAACTGACTCTCCTCTTTCTGGTTTTTTCTAGTGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGAACATAGCTAGCTACTTTCTTCTTACCT</genome_strand>
        <mrna_strand>AGATTCAAAACCTCCTGAAATCCTCCGCCGATATTCTCATTCGCTAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGAC...............................................................................................GTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTT.......................................................................................................TGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGGACATAGCTAGCTACTTTCTTCTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206651" ref_strand="+" ref_description="SGN-E206651 [cLEC-31-D10]">
      <seq>tgagtactatttctttggatattattaaatcaagagacaacgctgttattctctttttcatggcgtcgattactcccccgccgacatttgatgtaaacactcacaaattcaacttctcaaaccctaaattcacttcccgattaaagcgttcatcttcgtctttcactctttcaacctctcatttactatctagggtttccggttccgctttctgttgtcgttgcaggaatggtaccggtgatggtgagactgttgagccatcgccatctgtttcttctcagaatagctcatcttcttcttcttcttggagatgggatttggcgtttcaagatgcggtcaagaatgcgatgaaaaagttggatgattatgtgaattggtcaaaaggagtgggacttgatgagaggaagagtgaaattggtgttgatgatcaagaatgggattgggaacgatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="107679" stop="108733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107979" g_stop="108433" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E206651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107979" e_stop="108433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTACTATTTCTTTGGATATTATTAAATCAAGAGACAACGCTGTTATTCTCTTTTTCATGGCGTCGATTACTCCCCCGCCGACATTTGATGTAAACACTCACAAATTCAACTTCTCAAACCCTAAATTCACTTCCCGATTAAAGCGTTCATCTTCGTCTTTCACTCTTTCAACCTCTCATTTACTATCTAGGGTTTCCGGTTCCGCTTTCTGTTGTCGTTGCAGGAATGGTACCGGTGATGGTGAGACTGTTGAGCCATCGCCATCTGTTTCTTCTCAGAATAGCTCATCTTCTTCTTCTTCTTGGAGATGGGATTTGGCGTTTCAAGATGCGGTCAAGAATGCGATGAAAAAGTTGGATGATTATGTGAATTGGTCAAAAGGAGTGGGACTTGATGAGAGGAAGAGTGAAATTGGTGTTGATGATCAAGAATGGGATTGGGAACGATGGAAA</genome_strand>
        <mrna_strand>TGAGTACTATTTCTTTGGATATTATTAAATCAAGAGACAACGCTGTTATTCTCTTTTTCATGGCGTCGATTACTCCCCCGCCGACATTTGATGTAAACACTCACAAATTCAACTTCTCAAACCCTAAATTCACTTCCCGATTAAAGCGTTCATCTTCGTCTTTCACTCTTTCAACCTCTCATTTACTATCTAGGGTTTCCGGTTCCGCTTTCTGTTGTCGTTGCAGGAATGGTACCGGTGATGGTGAGACTGTTGAGCCATCGCCATCTGTTTCTTCTCAGAATAGCTCATCTTCTTCTTCTTCTTGGAGATGGGATTTGGCGTTTCAAGATGCGGTCAAGAATGCGATGAAAAAGTTGGATGATTATGTGAATTGGTCAAAAGGAGTGGGACTTGATGAGAGGAAGAGTGAAATTGGTGTTGATGATCAAGAATGGGATTGGGAACGATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341606" ref_strand="+" ref_description="SGN-E341606 [cTOE-23-K3]">
      <seq>tttacttgaagagaaagccagttcagcaagatttacctatttcttcttcaaagctgcccggtgcttccagtaacttggacactgttggtcccactgaaaacaaaagtgatatgtttgataagatctcagatgctgaggaagatggcgaagacagggaagacgattttggctttcagaatgcattgaaagacatgattccaggggtacaggtcaaggttttgaaagtgacagctccagggaaggtagatagagatctaatatcaaaggtcattgagcaaataatggatgaggaagatgaggatgaagagaaggactatgatttggacagtgtggatgacgaagatgaaattaaggtggaaagagatggagagcagaatgtgattgaattggatacagacaatggggttagtgatggtgaagagcagagccaaattgcagttagggtggttgttggtggtctcatgcaaaattcctcaaatggtgctcatcataaagatctgcttcgagtaccggcaaggctagagaagaagggtcacctgtcatttactttcactatagaggaagatgagaacaaaagcaatttctctggcagtggacaatctcccccaaataaaaaggctaggcttcaaggtcaacgtagcttggatcatgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="113076" stop="114330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113376" g_stop="114030" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E341606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113376" e_stop="114030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTGAAGAGAAAGCCAGTTCAGCAAGATTTACCTATTTCTTCTTCAAAGCTGCCCGGTGCTTCCAGTAACTTGGACACTGTTGGTCCCACTGAAAACAAAAGTGATATGTTTGATAAGATCTCAGATGCTGAGGAAGATGGCGAAGACAGGGAAGACGATTTTGGCTTTCAGAATGCATTGAAAGACATGATTCCAGGGGTACAGGTCAAGGTTTTGAAAGTGACAGCTCCAGGGAAGGTAGATAGAGATCTAATATCAAAGGTCATTGAGCAAATAATGGATGAGGAAGATGAGGATGAAGAGAAGGACTATGATTTGGACAGTGTGGATGACGAAGATGAAATTAAGGTGGAAAGAGATGGAGAGCAGAATGTGATTGAATTGGATACAGACAATGGGGTTAGTGATGGTGAAGAGCAGAGCCAAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCGAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGAT</genome_strand>
        <mrna_strand>TTTACTTGAAGAGAAAGCCAGTTCAGCAAGATTTACCTATTTCTTCTTCAAAGCTGCCCGGTGCTTCCAGTAACTTGGACACTGTTGGTCCCACTGAAAACAAAAGTGATATGTTTGATAAGATCTCAGATGCTGAGGAAGATGGCGAAGACAGGGAAGACGATTTTGGCTTTCAGAATGCATTGAAAGACATGATTCCAGGGGTACAGGTCAAGGTTTTGAAAGTGACAGCTCCAGGGAAGGTAGATAGAGATCTAATATCAAAGGTCATTGAGCAAATAATGGATGAGGAAGATGAGGATGAAGAGAAGGACTATGATTTGGACAGTGTGGATGACGAAGATGAAATTAAGGTGGAAAGAGATGGAGAGCAGAATGTGATTGAATTGGATACAGACAATGGGGTTAGTGATGGTGAAGAGCAGAGCCAAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCGAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209423" ref_strand="+" ref_description="SGN-E209423 [cLEC-53-L3]">
      <seq>tttggacagtgtggatgacgaagatgaaattaaggtggaaagagatggagagcagaatgtgattgaattggatacagacaatggggttagtgatggtgaagagcagagccaaattgcagttagggtggttgttggtggtctcatgcaaaattcctcaaatggtgctcatcataaagatctgcttcgagtaccggcaaggctagagaagaagggtcacctgtcatttactttcactatagaggaagatgagaacaaaagcaatttctctggcagtggacaatctcccccaaataaaaaggctaggcttcaaggtcaacgtagcttggatcatgtgatggttgatcttgcaaagttcatgggcaaggggaaaatacctatgaaggtccttaaagatatgggagagttgatcagcctcactcttactcaggcacgaaatcgtcagccattatcaaagtcaaccacctttaaccgcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="113395" stop="114548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113695" g_stop="114076" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114077" i_stop="114153" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114154" g_stop="114248" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="477" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E209423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113695" e_stop="114076"/>
          <exon e_start="114154" e_stop="114248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGACAGTGTGGATGACGAAGATGAAATTAAGGTGGAAAGAGATGGAGAGCAGAATGTGATTGAATTGGATACAGACAATGGGGTTAGTGATGGTGAAGAGCAGAGCCAAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCGAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAGGTTAGAACGCTTTTATCTTGTCGTTCAAATTGCTTAGTTTTTATTCTTCTCTTTAATGGTTTTACTGAAATATGCAGGTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAGGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGA</genome_strand>
        <mrna_strand>TTTGGACAGTGTGGATGACGAAGATGAAATTAAGGTGGAAAGAGATGGAGAGCAGAATGTGATTGAATTGGATACAGACAATGGGGTTAGTGATGGTGAAGAGCAGAGCCAAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCGAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAG.............................................................................GTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAGGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688637" ref_strand="+" ref_description="SGN-E688637 [t3_tus_54_E05]">
      <seq>gcagaatgtgattgacttggatacagaccatggggttagtgatggtgaagagcagagcccaattgcagttagggtggttgttggtggtctcatgcaaaattcctcaaatggtgctcatcataaagatctgcttcaagtaccggcaaggctagagaagaagggtcacctgtcatttactttccctatagaggaagatgagaacaaaagcaatttctctggcagtggaccatctcccccaaataaaaaggctaggcttcaaggtcaacgtacctagcatcatgtgatggttgatcttgcaaagttcatgggcaaggggaaaatacctatgaaggtccttaaagatatgggagagttgatcagcctcactcttactcaagcacgaaatcgtcagccattatcaaagtcaaccacctttaaccgcattgagatttcaacatctccagacccactaaatggattatatattggtgctcatggtctgtacacttcagaagtcattcactttagacgaagatttggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="113446" stop="114803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113746" g_stop="114076" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114077" i_stop="114153" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114154" g_stop="114277" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="455" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114278" i_stop="114437" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114438" g_stop="114503" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="521" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E688637" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113746" e_stop="114076"/>
          <exon e_start="114154" e_stop="114277"/>
          <exon e_start="114438" e_stop="114503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAATGTGATTGAATTGGATACAGACAATGGGGTTAGTGATGGTGAAGAGCAGAGCCAAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCGAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAGGTTAGAACGCTTTTATCTTGTCGTTCAAATTGCTTAGTTTTTATTCTTCTCTTTAATGGTTTTACTGAAATATGCAGGTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAGGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGAGATTTCAACATCTCCAGACCCACTAAATGGTGATTAATCTTCAATATGTCTTTCTTCTTTTATTCTCTTGCTGTCTAGATTGCTGATTTTCCTTTGTCTAGTAATTAAGCTTGTTCAACTAGTGCATCGTCATTGTTATTCTACCCACTCTCATTCTTAAGTCGGATGATCATTTACTATTTTTATCAGGATTATATATTGGTGCTCATGGTCTGTACACTTCAGAAGTCATTCACTTTAGACGAAGATTTGGTC</genome_strand>
        <mrna_strand>GCAGAATGTGATTGACTTGGATACAGACCATGGGGTTAGTGATGGTGAAGAGCAGAGCCCAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCAAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCCCTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACCATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTACCTAGCATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAG.............................................................................GTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAAGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGAGATTTCAACATCTCCAGACCCACTAAATG................................................................................................................................................................GATTATATATTGGTGCTCATGGTCTGTACACTTCAGAAGTCATTCACTTTAGACGAAGATTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550908" ref_strand="+" ref_description="SGN-E550908 [TUS-54-E5]">
      <seq>gcagaatgtgattgacttggatacagaccatggggttagtgatggtgaagagcagagcccaattgcagttagggtggttgttggtggtctcatgcaaaattcctcaaatggtgctcatcataaagatctgcttcaagtaccggcaaggctagagaagaagggtcacctgtcatttactttcactatagaggaagatgagaacaaaagcaatttctctggcagtggacaatctcccccaaataaaaaggctaggcttcaaggtcaacgtacctagcatcatgtgatggttgatcttgcaaagttcatgggcaaggggaaaatacctatgaaggtccttaaagatatgggagagttgatcagcctcactcttactcaagcacgaaatcgtcagccattatcaaagtcaaccacctttaaccgcattgagatttcaacatctccagacccactaaatggattatatattggtgctcatggtctgtacacttcagaagtcattcactttagacgaagatttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="113446" stop="114802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113746" g_stop="114076" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114077" i_stop="114153" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114154" g_stop="114277" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="455" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114278" i_stop="114437" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114438" g_stop="114502" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="520" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E550908" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113746" e_stop="114076"/>
          <exon e_start="114154" e_stop="114277"/>
          <exon e_start="114438" e_stop="114502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAATGTGATTGAATTGGATACAGACAATGGGGTTAGTGATGGTGAAGAGCAGAGCCAAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCGAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAGGTTAGAACGCTTTTATCTTGTCGTTCAAATTGCTTAGTTTTTATTCTTCTCTTTAATGGTTTTACTGAAATATGCAGGTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAGGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGAGATTTCAACATCTCCAGACCCACTAAATGGTGATTAATCTTCAATATGTCTTTCTTCTTTTATTCTCTTGCTGTCTAGATTGCTGATTTTCCTTTGTCTAGTAATTAAGCTTGTTCAACTAGTGCATCGTCATTGTTATTCTACCCACTCTCATTCTTAAGTCGGATGATCATTTACTATTTTTATCAGGATTATATATTGGTGCTCATGGTCTGTACACTTCAGAAGTCATTCACTTTAGACGAAGATTTGGT</genome_strand>
        <mrna_strand>GCAGAATGTGATTGACTTGGATACAGACCATGGGGTTAGTGATGGTGAAGAGCAGAGCCCAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCAAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTACCTAGCATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAG.............................................................................GTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAAGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGAGATTTCAACATCTCCAGACCCACTAAATG................................................................................................................................................................GATTATATATTGGTGCTCATGGTCTGTACACTTCAGAAGTCATTCACTTTAGACGAAGATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316626" ref_strand="+" ref_description="SGN-E316626 [cTOB-7-D15]">
      <seq>ggaagggtcacctgtcatttactttcactatagaggaagatgagaacaaaagcaatttctctggcagtggacaatcttccccaaataaaaaggctaggcttcaaggtcaacgtagcttggatcatgtgatggttgatcttgcaaagttcatgggcaaggggaaaatacctatgaaggtccttaaagatatgggagagttgatcagcctcactcttactcaagcacgaaatcgtcagccattatcaaagtcaaccacctttaaccgcattgagatttcaacatctccagacccactaaatggattatatattggtgctcatggtctgtacacttcagaagtcattcactttatacgaagatttggtcattggaaagaagacggtagccctaaagagtcttcacgcttagaattttacgagtatgttgaagcggtaaaattaactggagactcttatgtgccacctggtcacatagcattccgtgcaagaattggaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="113602" stop="114923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113901" g_stop="114076" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114077" i_stop="114153" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114154" g_stop="114277" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="300" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114278" i_stop="114437" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114438" g_stop="114607" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="470" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114608" i_stop="114916" i_length="309">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114917" g_stop="114923" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="477" r_length="7" r_score="0.429"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E316626" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113901" e_stop="114076"/>
          <exon e_start="114154" e_stop="114277"/>
          <exon e_start="114438" e_stop="114607"/>
          <exon e_start="114917" e_stop="114923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAGGTTAGAACGCTTTTATCTTGTCGTTCAAATTGCTTAGTTTTTATTCTTCTCTTTAATGGTTTTACTGAAATATGCAGGTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAGGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGAGATTTCAACATCTCCAGACCCACTAAATGGTGATTAATCTTCAATATGTCTTTCTTCTTTTATTCTCTTGCTGTCTAGATTGCTGATTTTCCTTTGTCTAGTAATTAAGCTTGTTCAACTAGTGCATCGTCATTGTTATTCTACCCACTCTCATTCTTAAGTCGGATGATCATTTACTATTTTTATCAGGATTATATATTGGTGCTCATGGTCTGTACACTTCAGAAGTCATTCACTTTAGACGAAGATTTGGTCAGTGGAAAGAAGACGGTAGCCCTAAGGAGTCTTCACGCTTAGAATTTTACGAGTATGTTGAAGCGGTAAAATTAACTGGAGACTCTTATGTGCCAGCTGGTCAGGTAACTTTACTTTGAATCCAAAAGTTGTGCATATAGTCTAACCTACAGAAGGTAGAGTCGCATTTTTTTCTTTTTAAATTAATCTAGGATATCTGAGATCATCCATTCTTGTTGGAGCGTAGAGATCCGAGACTAACGATATAATGGATAAGCTGGACATAAAAGCGTACCTGTTTTCTATGCCTAAGTCGCATAGGTGTATTGCTAATCCTTTGAGTAATGAAGATTGAAAATCTACAGTGTGTCATATCTTGTATTTGTGCGTTTTAGTATGTTGTAAAAAAATTCTTGCCTTGCTTTTTAAAATAGAGAGGGG</genome_strand>
        <mrna_strand>GGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTTCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAG.............................................................................GTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAAGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGAGATTTCAACATCTCCAGACCCACTAAATG................................................................................................................................................................GATTATATATTGGTGCTCATGGTCTGTACACTTCAGAAGTCATTCACTTTATACGAAGATTTGGTCATTGGAAAGAAGACGGTAGCCCTAAAGAGTCTTCACGCTTAGAATTTTACGAGTATGTTGAAGCGGTAAAATTAACTGGAGACTCTTATGTGCCACCTGGTCAC.....................................................................................................................................................................................................................................................................................................................ATAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368645" ref_strand="+" ref_description="SGN-E368645 [TUS-22-F14](-)">
      <seq>caaaaaattaaaaaatatttaactgcataattttgtccaaaaatcttaatagcaataacacatattaacaaatattcaattcaaaaaccaatagtagatactaaaatgtctaaaactttaaagaccaaacaattcaaaatacaataaaccaaaactttaaaagtctattcttcttcaaattatccaacccttgagtgtcataattccatccaatgtccctcttttgctagcaactgccattgattattaaattcaattaattcgctatttaggaatattggaataaataattaggaaaatggaaagattttttttttaattaactgcctataattaaaaaaaattacacaaagcagtaagcaactaagcactgcttacagccttgcaccaaaaaagcacaactgaaaaaaaaaactgaagaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="114762" stop="115795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115060" g_stop="115493" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E368645" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115060" e_stop="115493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATT-AAAAATATTTAACTGCAT-ATTTTATCC-AAAATCTTAATAGCAATAACACATATTAGCAAATATTCAATTCAAAAACTAATAGTAGATACTAAAATGTCTAAAACTTTAATGACCAAACAATTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTCTTTCTTCAAAATTATCCAACCCTTGAGTGTCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCACCATTGATTATTAAATTCAATTAATTCGCTGTTTAGGAATATTGAAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTAAATTAACTGCCTATAATTAAAAAAAGTAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAAAAAAAAAACTGAAGAAGAAG</genome_strand>
        <mrna_strand>CAAAAAATTAAAAAATATTTAACTGCATAATTTTGTCCAAAAATCTTAATAGCAATAACACATATTAACAAATATTCAATTCAAAAACCAATAGTAGATACTAAAATGTCTAAAACTTTAAAGACCAAACAATTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTC-TTCTTC-AAATTATCCAACCCTTGAGTGTCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACTGCCATTGATTATTAAATTCAATTAATTCGCTATTTAGGAATATTGGAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTTAATTAACTGCCTATAATT--AAAAA--AAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAGCACAACTGAAAAAAAAAACTGAA--GAAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208702" ref_strand="+" ref_description="SGN-E208702 [cLEC-39-D12]">
      <seq>ttcaaaatacaataaaccaaaactttaaaagtctattctttcttcaaaattatccaacccttgagtgtcataattccatccaatgtccctcttttgctagcaaccaccattgattattaaattcaattaattcgctgtttaggaatattgaaataaataattaggaaaatggaaagatttttttttaaattaactgcctataattaaaaaaagtaaattacacaaagcagtaagcaactaagcactgcttacagccttgcaccaaaaaaacacaactgaaaaaaaaaaaaaaactgatgaagaagaacagaaaaaaattgttgaagaagaagagagaaaacgacatacctggagaacagagagtcgcgagggaaaagaatcgtgagccggcggcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="114889" stop="115885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115189" g_stop="115585" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E208702" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115189" e_stop="115585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTCTTTCTTCAAAATTATCCAACCCTTGAGTGTCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCACCATTGATTATTAAATTCAATTAATTCGCTGTTTAGGAATATTGAAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTAAATTAACTGCCTATAATTAAAAAAAGTAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAAAAAAAAAACTGAAGAAGAAGAACAGAAAAAAATTGTTGAAGAAGAAGAGAGAAAACGACATACCTGGAGAACAGAGAGTCGCGAGGGAAAAGAATCGTGAGCCGGCGGCCTG</genome_strand>
        <mrna_strand>TTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTCTTTCTTCAAAATTATCCAACCCTTGAGTGTCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCACCATTGATTATTAAATTCAATTAATTCGCTGTTTAGGAATATTGAAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTAAATTAACTGCCTATAATTAAAAAAAGTAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAAAAAAAAAACTGATGAAGAAGAACAGAAAAAAATTGTTGAAGAAGAAGAGAGAAAACGACATACCTGGAGAACAGAGAGTCGCGAGGGAAAAGAATCGTGAGCCGGCGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313800" ref_strand="+" ref_description="SGN-E313800 [cTOA-17-N2]">
      <seq>tgacactcaagggttggataattccatccaatgtccctcttttgctagcaaccaccattgattattaaattcaattaatttgctgtttaggaatattgaaataaataattaggaaaatggaaagattttttttttaattaactgcctataattaaaaaaagtaaattacacaaagcagtaagcaactaagcactgcttacagccttgcaccaaaaaaacacaactgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="114958" stop="115776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115241" g_stop="115476" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E313800" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115241" e_stop="115476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACCCTTGAGTGTCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCACCATTGATTATTAAATTCAATTAATTCGCTGTTTAGGAATATTGAAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTAAATTAACTGCCTATAATTAAAAAAAGTAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAAAAA</genome_strand>
        <mrna_strand>TGACACTCAAGGGTTGGATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCACCATTGATTATTAAATTCAATTAATTTGCTGTTTAGGAATATTGAAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTTAATTAACTGCCTATAATTAAAAAAAGTAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249307" ref_strand="-" ref_description="SGN-E249307 [cLEF-50-C17]">
      <seq>atgtgccagctggtcagatagcattccgtgcaagaattggaaaaaagtatcaacttccacataaaggaattattccagaagaatttggtgtgattgctcgttataggggacaaggaaggctggcagagcctggtttccggaaccccagatgggttgatggtgaactggttatcctagatggaaagtacattaaaggaggacccgttgtgggttttgtctactgggatcctgaatatcatttcttagtattcttccatcggcttaggctgcaggagtgaacatctctgtagatacaatttttggctgtttgttcctggttcagttctttgcagtcaacatgatatctagtaccacgaaccttgagctgaagagaagactcaagatttcgtttgaatatggagtccttggcaactgactgttttagtggccagcataaaaccttttgcattatatggaactaacagccatttttgagttgatagcccccaatatctctggtatagcaaatggtcgaggcctactagcattttcttagggcactgagcttgtacatatgctctttatttgtttttttttcagctcttgtattattcttttttctccttcagtaaacattgttgtacgttcaaaaaacttggaatttattctctaatagaatccgaagatagaacggtacattggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="115664" stop="117498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115977" g_stop="116051" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="92" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116052" i_stop="116196" i_length="145">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116197" g_stop="116289" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="185" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116290" i_stop="116395" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116396" g_stop="116542" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="332" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116543" i_stop="116845" i_length="303">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116846" g_stop="117193" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="680" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117194" i_stop="117372" i_length="179">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.592" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117373" g_stop="117384" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="692" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E249307" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249307" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="115977" e_stop="116051"/>
          <exon e_start="116197" e_stop="116289"/>
          <exon e_start="116396" e_stop="116542"/>
          <exon e_start="116846" e_stop="117193"/>
          <exon e_start="117373" e_stop="117384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCATTCCGTGCAAGAATTGGAAAAAAGTATCAACTTCCACATAAAGGAATTATTCCAGAAGAATTTGGTGTGGTAAGTGATCTAGTGATTTTTGGATTGCTTAATATTTGTTTTGCCTATCTTCTTTTTGGTGCATAAGTTCCATGGCTATCAATTTTATGATGTGTGGGTCTATCTCTTACATTTTAGGCCTATATTTTCTCTATTACCAATGCAGATTGCTCGTTATAGGGGACAAGGAAGGCTGGCAGAGCCTGGTTTCCGGAACCCCAGATGGGTTGATGGTGAACTGGTTATCCTAGATGGAAAGGTTTAGAGATCTCTATTTAATGGCACCCTTTTTCTTTTGTTTTGTTGTCTCTTTATTCTCTCAATTTCATTTTCTCCACATATTTATTTCCTGTTGAATTGTGCAGTACATTAAAGGAGGACCCGTTGTGGGTTTTGTCTACTGGGATCCTGAATATCATTTCTTAGTATTCTTCCATCGGCTTAGGCTGCAGGAGTGAACATCTCTGTAGATACAATTTTTGGCTGTTTGTTCCTGGTTCAGTTCTTTGCAGGTATGCTCTTTTGCACTTGTGTTTAGCAAATTGGCTCTAATTTAACACACACACACAAATTGACATGCAAAAACTCAAGAAAAACAATCACAGCCCCCCCCCCCAAAAAAAAATGCAGATAGCTCACATTTTAGTCATAAAAAACCATGTTAGATGGTCAACTATCATTTAGATGGTCAACTATCATTTACTTGACATTCTCTTCAACATTCAAGAATTGTATAGGTACAAACTTAATTCTCTTTAACCGATATCACTTTGATCTCCCGATCTCAAGATGTGTGCTTCTCTGTTCCTTTGCAGTCAACATGATATCTAGTACCACGAACCTTGAGCTGAAGAGAAGACTCAAGATTTCGTTTGAATATGGAGTCCTTGGCAACTGACTGTTTTAGTGGCCAGCATAAAACCTTTTGCATTATATGGAACTAACAGCCATTTTTGAGTTGATAGCCCCCAATATCTCTGGTATAGCAAATGGTCGAGGCCTACTAGCATTTTCTTAGGGCACTGAGCTTGTACATATGCTCTTTATTTGTTTTTTTTTCAGCTCTTGTATTATTCTTTTTTCTCCTTCAGTAAACATTGTTGTACGTTCAAAAAACTTGGAATTTATTCTCTAATAGAATCCGAAGATAGAACGGTACATTGGCAAATGTCTTATGTTCTGATTTTGTATTCCTGGGTTCTTAAAATTGTATTAGCTACTGAACTGCAGCTTCTAAGACTTGATGCATTTTGGGTAGGAATTGTTTCTTTAATGTTCTTACAATGAATTGGATAGCTCTGTGGGTGTATCACGAACATTTATGGTTCATTGACACACATAGGCAGACAAACAA</genome_strand>
        <mrna_strand>ATAGCATTCCGTGCAAGAATTGGAAAAAAGTATCAACTTCCACATAAAGGAATTATTCCAGAAGAATTTGGTGTG.................................................................................................................................................ATTGCTCGTTATAGGGGACAAGGAAGGCTGGCAGAGCCTGGTTTCCGGAACCCCAGATGGGTTGATGGTGAACTGGTTATCCTAGATGGAAAG..........................................................................................................TACATTAAAGGAGGACCCGTTGTGGGTTTTGTCTACTGGGATCCTGAATATCATTTCTTAGTATTCTTCCATCGGCTTAGGCTGCAGGAGTGAACATCTCTGTAGATACAATTTTTGGCTGTTTGTTCCTGGTTCAGTTCTTTGCAG...............................................................................................................................................................................................................................................................................................................TCAACATGATATCTAGTACCACGAACCTTGAGCTGAAGAGAAGACTCAAGATTTCGTTTGAATATGGAGTCCTTGGCAACTGACTGTTTTAGTGGCCAGCATAAAACCTTTTGCATTATATGGAACTAACAGCCATTTTTGAGTTGATAGCCCCCAATATCTCTGGTATAGCAAATGGTCGAGGCCTACTAGCATTTTCTTAGGGCACTGAGCTTGTACATATGCTCTTTATTTGTTTTTTTTTCAGCTCTTGTATTATTCTTTTTTCTCCTTCAGTAAACATTGTTGTACGTTCAAAAAACTTGGAATTTATTCTCTAATAGAATCCGAAGATAGAACGGTACATTG...................................................................................................................................................................................GCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351978" ref_strand="+" ref_description="SGN-E351978 [cTOS-13-G1]">
      <seq>aagtttccttcaacaacttgaacaaaccatgatgtattgccaatcttttctttagaaaagactgcattttatgtactccagtagtttctatgatcacaataatactacaacatgatgtgctgtttccattagattaacgcaagaatagggttgccttgtctagtcaatagatgtatgttatgaatgcagtgtccattcatttccttataataggatagtagtctatccataaatttgccaaaataatatattgtactacagtttcaatagatttcgtattggacataacaattgcatcagaaaattgaacagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="118057" stop="117142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117757" g_stop="117445" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="314" polyA_stop="325"/>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E351978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117757" e_stop="117445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTCTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTCATTTCCTTATAATAGGATAGTAGTCTATCCATAAATTTGCCAAAATAATATATTGTACTACAGTTTCAATAGATTTCGTATTGGACATAACAATTGCATCAGAAAATTGAACAGA</genome_strand>
        <mrna_strand>AAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTCTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTCATTTCCTTATAATAGGATAGTAGTCTATCCATAAATTTGCCAAAATAATATATTGTACTACAGTTTCAATAGATTTCGTATTGGACATAACAATTGCATCAGAAAATTGAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542877" ref_strand="+" ref_description="SGN-E542877 [TUS-64-G12](-)">
      <seq>tttaaaggatgtagtagtttactttcagggatgtgccccctttgattttccactttttagggcaagataccccaaagatatttccccacatccccaggagttaatgcatcatgtgggactttatatggccaagggaaggggtgcaaaaatagttaaagaagtttctttcaacaatttgaacaaaccatgatgtattgccaattttttttttagaaaagactgcattttatgtactccagtagtttttatgatcccaataatactacaacatgatgggctgtttccattagattaacgcaagaatagggttgccttgtttagtcaatagatgtatgttatgaatgcagtgtccattcatttccttataataggatagtagtctatccataaatttgcccaaaataatatattgtactacagtttcaatagatttggttttggccataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="118303" stop="117167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118003" g_stop="117907" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117906" i_stop="117819" i_length="88">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117818" g_stop="117468" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="449" r_length="352" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="491"/>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E542877" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118003" e_stop="117907"/>
          <exon e_start="117818" e_stop="117468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAGGTAATCTATAACAAATAACAAAATTGTCGACTTCTTGATCAACTTATTCAGTGTTTAACTAGTCGTCTTGATATTTTGGATTTTGCAGGAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTCTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTCATTTCCTTATAATAGGATAGTAGTCTATCCATAAATTTG-CCAAAATAATATATTGTACTACAGTTTCAATAGATTTCGTATTGGACATAACA</genome_strand>
        <mrna_strand>TTTAAAGGATGTAGTAGTTTACTTTCAGGGATGTGCCCCCTTTGATTTTCCACTTTTTAGGGCAAGATACCCCAAAGATATTTCCCCACATCCCCAG........................................................................................GAGTTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGTTAAAGAAGTTTCTTTCAACAATTTGAACAAACCATGATGTATTGCCAATTTTTTTTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTTTATGATCCCAATAATACTACAACATGATGGGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTTTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTCATTTCCTTATAATAGGATAGTAGTCTATCCATAAATTTGCCCAAAATAATATATTGTACTACAGTTTCAATAGATTTGGTTTTGGCCATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303628" ref_strand="+" ref_description="SGN-E303628 [cLEY-6-M23](-)">
      <seq>ttgtgtgctggactttgtttgctctacattatcagctaagaaccgcggattcctcaaccctttaaaggatgtagtagtttactctcagggatgtgccacctttgattttccactctctatggcaagatacaccaaagatatttcaccacatccacaggtaatctataacaaataacaaaattgtcgacttcttgatcaacttattcagtgtttaactagtcgtcttgatattttggattttgcaggagctaatgcatcatgtgggactttatatggccaagggaaggggtgcaaaaatagctaaagaagtttccttcaacaacttgaacaaaccatgatgtattgccaatcttttctttagaaaagactgcattttatgtactccagtagtttctatgatcccaataatactacaacatgatgtgctgtttccattagattaacgcaagaatagggttgccttgtctagtcaatagatgtatgttatgaatgcagtgtccattcatttccttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="118363" stop="117241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118063" g_stop="117560" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="534"/>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E303628" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118063" e_stop="117560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAGGTAATCTATAACAAATAACAAAATTGTCGACTTCTTGATCAACTTATTCAGTGTTTAACTAGTCGTCTTGATATTTTGGATTTTGCAGGAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTCTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTC</genome_strand>
        <mrna_strand>TTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAGGTAATCTATAACAAATAACAAAATTGTCGACTTCTTGATCAACTTATTCAGTGTTTAACTAGTCGTCTTGATATTTTGGATTTTGCAGGAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCCCAATAATACTACAACATGATGTGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTCTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717617" ref_strand="+" ref_description="SGN-E717617 [FC02BA04]">
      <seq>aatcggccgaattgactattagaaaattggcagggaaaaacaaagatggtaataaaaacagtagatcttttgaagaatgaaattcccatagaggaggaatcagtagtcatcactgaagatattaaggctggacttgttcttgtggacataatcaatggattttgtactgttggagctggaaatctggcaccaagagagcctaacaggcagatcagtgaaatgattgatgaatcatcaaggcttgctagagcgttttgtgacaagaaattgccagttcttgcctttcttgattcacatcaacctgataaacttgaacacccatatccttctcactgcatcactggcactgatgaatccaacttggttcctgcactaagatgggtggaggaggaaccaaatgttaccatcaggcgcaaagattgttatgatggctatattggttcctttcaggaggatggctctaatgtatttgttgattgggtgaagaacaaccaagttcaacttttgttggtggtaggggtgtgcacggatatttgtgtgctggactttgtttgctctacattatcagctaagaaccgcggattcctcaaccctttaaaggatgtagtagtttactctcagggatgtgccacctttgattttccactctctatggcaagatacaccaaagatatttcaccacatccacaggagctaatgcatcatgtgggactttatatggccaagggaaggggtgcaaaaatagctaaagaagtttccttcaacaacttgaacaaaccatgatgtattgccaatcttttctttagaaaagactgcattttatgtactccagtagtttctatgatcacaataatactacaacatgatgtgctgtttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="119381" stop="117330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119070" g_stop="118907" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="186" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118906" i_stop="118831" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118830" g_stop="118647" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="370" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118646" i_stop="118326" i_length="321">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118325" g_stop="118192" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="504" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.128" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118092" g_stop="117907" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="690" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117906" i_stop="117819" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117818" g_stop="117630" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="879" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E717617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119070" e_stop="118907"/>
          <exon e_start="118830" e_stop="118647"/>
          <exon e_start="118325" e_stop="118192"/>
          <exon e_start="118092" e_stop="117907"/>
          <exon e_start="117818" e_stop="117630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGGCAGGGAAAAACAAAGATGGTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTGGTACTTACAATTAAACTTGTTCTTTGTTTTATTACTTAATTAACTAGTTGATTTTTTTTTTGCTTGTAAATCATAGGCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTGGTACTAATTTTACTACTAAAAATAATGGTTATTTCATCAATGGGAAATTTGTGATATAGAATATGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTTGTATGTACTCACTCTCTTTTGCTTCTCTAAAACTTCCTATTATATGGTTCATATAACACATTTGTGGTTGACTTAACTGTTTTGTTTACTTGAACCAAGTTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAGGTAATCTATAACAAATAACAAAATTGTCGACTTCTTGATCAACTTATTCAGTGTTTAACTAGTCGTCTTGATATTTTGGATTTTGCAGGAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCA</genome_strand>
        <mrna_strand>AAAATTGGCAGGGAAAAACAAAGATGGTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTG............................................................................GCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTG.................................................................................................................................................................................................................................................................................................................................CACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT...................................................................................................TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAG........................................................................................GAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709701" ref_strand="+" ref_description="SGN-E709701 [FA52DE01]">
      <seq>cggaaattcccatagaggaggaatcagtagtcatcactgaagatattaaggctggacttgttcttgtggacataatcaatggattttgtactgttggagctggaaatctggcaccaagagagcctaacaggcagatcagtgaaatgattgatgaatcatcaaggcttgctagagcgttttgtgacaagaaattgccagttcttgcctttcttgattcacatcaacctgataaacttgaacacccatatccttctcactgcatcactggcactgatgaatccaacttggttcctgcactaagatgggtggaggaggaaccaaatgttaccatcaggcgcaaagattgttatgatggctatattggttcctttcaggaggatggctctaatgtatttgttgattgggtgaagaacaaccaagttcaacttttgttggtggtaggggtgtgcacggatatttgtgtgctggactttgtttgctctacattatcagctaagaaccgcggattcctcaaccctttaaaggatgtagtagtttactctcagggatgtgccacctttgattttccactctctatggcaagatacaccaaagatatttcaccacatccacaggagctaatgcatcatgtgggactttatatggccaagggaaggggtgcaaaaatagctaaagaagtttccttcaacaacttgaacaaaccatgatgtattgccaatcttttctttacaaaagatgcattttatgtactccagtagtttctatgatcacaataatactaccacatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="119314" stop="117342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119016" g_stop="118907" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118906" i_stop="118831" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118830" g_stop="118647" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="294" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118646" i_stop="118326" i_length="321">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118325" g_stop="118192" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="428" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.128" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118092" g_stop="117907" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="614" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117906" i_stop="117819" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117818" g_stop="117642" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="790" r_length="176" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E709701" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119016" e_stop="118907"/>
          <exon e_start="118830" e_stop="118647"/>
          <exon e_start="118325" e_stop="118192"/>
          <exon e_start="118092" e_stop="117907"/>
          <exon e_start="117818" e_stop="117642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTGGTACTTACAATTAAACTTGTTCTTTGTTTTATTACTTAATTAACTAGTTGATTTTTTTTTTGCTTGTAAATCATAGGCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTGGTACTAATTTTACTACTAAAAATAATGGTTATTTCATCAATGGGAAATTTGTGATATAGAATATGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTTGTATGTACTCACTCTCTTTTGCTTCTCTAAAACTTCCTATTATATGGTTCATATAACACATTTGTGGTTGACTTAACTGTTTTGTTTACTTGAACCAAGTTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAGGTAATCTATAACAAATAACAAAATTGTCGACTTCTTGATCAACTTATTCAGTGTTTAACTAGTCGTCTTGATATTTTGGATTTTGCAGGAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGAT</genome_strand>
        <mrna_strand>CGGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTG............................................................................GCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTG.................................................................................................................................................................................................................................................................................................................................CACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT...................................................................................................TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAG........................................................................................GAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTACAAAAGA-TGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACCACATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542878" ref_strand="+" ref_description="SGN-E542878 [TUS-64-G12]">
      <seq>gatttcccaccacatgtgatggaaaaacagattctcacgaaaatagtagaaaactttactattttttgcaatgactttcatctttaagtatatacatatccatattagcaaaaaaaagggggacaaaaccatcaaaattttggacaattactcgatctgtgatcaatcgttgcctaggagttggggactctgtattactcgatttgtactgattatttgattttgtatcatctactctgatgatgaaattgttgcagcactaagatgggtggaggaggaaccaaatgttaccatcaggcgcaaagattgttatgatggctatattggttcctttcaggaggatggctctaatgtatttgttgattgggtgaagaacaaccaagttcaacttttgttggtggtaggggtgtgcacggatatttgtgtgctggactttgtttgctctacattatcagctaagaaccgcggattcctcaaccctttaaaggatgtagtagtttactctcagggatgtgccacctttgattttccactctctatggcaagatacaccaaagatatttcaccacatccacaggagctaatgcatcatgtgggactttatatggccaagggaaggggtgcaaaaatagctaaagaagtttccttncacaactttgacaaaccatgatgtattgccaatcttttctttagaaagactgcattttatgtactccagtagtttctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="118882" stop="117364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118582" g_stop="118192" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.128" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118092" g_stop="117907" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="577" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117906" i_stop="117819" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117818" g_stop="117664" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="731" r_length="154" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E542878" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118582" e_stop="118192"/>
          <exon e_start="118092" e_stop="117907"/>
          <exon e_start="117818" e_stop="117664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTTGTATGTACTCACTCTCTTTTGCTTCTCTAAAACTTCCTATTATATGGTTCATATAACACATTTGTGGTTGACTTAACTGTTTTGTTTACTTGAACCAAGTTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAGGTAATCTATAACAAATAACAAAATTGTCGACTTCTTGATCAACTTATTCAGTGTTTAACTAGTCGTCTTGATATTTTGGATTTTGCAGGAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGAT</genome_strand>
        <mrna_strand>GATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT...................................................................................................TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAG........................................................................................GAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTNCACAACTTTGACAAACCATGATGTATTGCCAATCTTTTCTTTAG-AAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541401" ref_strand="+" ref_description="SGN-E541401 [TUS-62-C19]">
      <seq>gggaaaaacaaagatggtaataaaaacagtagatcttttgaagaatgaaattcccatagaggaggaatcagtagtcatcactgaagatattaaggctggacttgttcttgtggacataatcaatggattttgtactgttggagctggaaatctggcaccaagagagcctaacaggcagatcagtgaaatgattgatgaatcatcaaggcttgctagagcgttttgtgacaagaaattgccagttcttgcctttcttgattcacatcaacctgataaacttgaacacccatatccttctcactgcatcactggcactgatgaatccaacttggttcctgcactaagatgggtggaggaggaaccaaatgttaccatcaggcgcaaagattgttatgatggctatattggttcctttcaggaggatggctctaatgtatttgttgattgggtgaagaacaaccaagttcaacttttgttggtggtaggggtgtgcacggatatttgtgtgctggactttgtttgctctacattatcagctaagaaccgcggattcctcaaccctttaaaggatgtagtagtttactctcagggatgtgccacctttgattttccactctctatggcaagatacaccaaagatatttcaccacatccacaggagctaatgcatcatgtgggactttatatggccaagggaaggggtgcaaaaatagctaaagaagtttcccttcacacttgaacaaaccatgatgtattgccaatcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="119360" stop="117408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119060" g_stop="118907" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118906" i_stop="118831" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118830" g_stop="118647" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="338" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118646" i_stop="118326" i_length="321">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118325" g_stop="118192" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="472" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.128" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118092" g_stop="117907" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="658" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117906" i_stop="117819" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117818" g_stop="117708" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="768" r_length="110" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E541401" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119060" e_stop="118907"/>
          <exon e_start="118830" e_stop="118647"/>
          <exon e_start="118325" e_stop="118192"/>
          <exon e_start="118092" e_stop="117907"/>
          <exon e_start="117818" e_stop="117708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAACAAAGATGGTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTGGTACTTACAATTAAACTTGTTCTTTGTTTTATTACTTAATTAACTAGTTGATTTTTTTTTTGCTTGTAAATCATAGGCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTGGTACTAATTTTACTACTAAAAATAATGGTTATTTCATCAATGGGAAATTTGTGATATAGAATATGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTTGTATGTACTCACTCTCTTTTGCTTCTCTAAAACTTCCTATTATATGGTTCATATAACACATTTGTGGTTGACTTAACTGTTTTGTTTACTTGAACCAAGTTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAGGTAATCTATAACAAATAACAAAATTGTCGACTTCTTGATCAACTTATTCAGTGTTTAACTAGTCGTCTTGATATTTTGGATTTTGCAGGAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTC</genome_strand>
        <mrna_strand>GGGAAAAACAAAGATGGTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTG............................................................................GCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTG.................................................................................................................................................................................................................................................................................................................................CACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT...................................................................................................TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAG........................................................................................GAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCCTTCAC-ACTTGAACAAACCATGATGTATTGCCAATCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302899" ref_strand="+" ref_description="SGN-E302899 [cLEW-26-C14]">
      <seq>atttcccaccacatgtgatggaaaaacagattctcacgaaaatagtagaaaactttactattttttgcaatgactttcatctttaagtatatacatatccatattagcaaaaaaaagggggacaaaaccatcaaaattttggacaattactcgatctgtgatcaatcgttgcctaggagttggggactctgtattactcgatttgtactgattatttgattttgtatcatctactctgatgatgaaattgttgcagcactaagatgggtggaggaggaaccaaatgttaccatcaggcgcaaagattgttatgatggctatattggttcctttcaggaggatggctctaatgtatttgttgattgggtgaagaacaaccaagttcaacttttgttggtggtaggggtgtgcacggatatttgtgtgctggactttgtttgctctacattatcagctaagaaccgcggattcctcaaccctttaaaggatgtagtagtttactctcagggatgtgccacctttgattttccactctctatggcaagatacaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="118881" stop="117628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118581" g_stop="118192" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.128" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118092" g_stop="117928" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="555" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E302899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118581" e_stop="118192"/>
          <exon e_start="118092" e_stop="117928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTTGTATGTACTCACTCTCTTTTGCTTCTCTAAAACTTCCTATTATATGGTTCATATAACACATTTGTGGTTGACTTAACTGTTTTGTTTACTTGAACCAAGTTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAA</genome_strand>
        <mrna_strand>ATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT...................................................................................................TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260916" ref_strand="+" ref_description="SGN-E260916 [cLEG-55-D7]">
      <seq>tggacataatcaatggattttgtactgttggagctggaaatctggcaccaagagagcctaacaggcagatcagtgaaatgattgatgaatcatcaaggcttgctagagcgttttgtgacaagaaattgccagttcttgcctttcttgattcacatcaacctgataaacttgaacacccatatccttctcactgcatcactggcactgatgaatccaacttggttcctgcactaagatgggtggaggaggaaccaaatgttaccatcaggcgcaaagattgttatgatggctatattggttcctttcaggaggatggctctaatgtatttgttgattgggtgaagaacaaccaagttcaacttttgttggtggtaggggtgtgcacggatatttgtgtgctggactttgtttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="119250" stop="117741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118950" g_stop="118907" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118906" i_stop="118831" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118830" g_stop="118647" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="228" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118646" i_stop="118326" i_length="321">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118325" g_stop="118192" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="362" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.128" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118092" g_stop="118041" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="414" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E260916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118950" e_stop="118907"/>
          <exon e_start="118830" e_stop="118647"/>
          <exon e_start="118325" e_stop="118192"/>
          <exon e_start="118092" e_stop="118041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTGGTACTTACAATTAAACTTGTTCTTTGTTTTATTACTTAATTAACTAGTTGATTTTTTTTTTGCTTGTAAATCATAGGCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTGGTACTAATTTTACTACTAAAAATAATGGTTATTTCATCAATGGGAAATTTGTGATATAGAATATGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTTGTATGTACTCACTCTCTTTTGCTTCTCTAAAACTTCCTATTATATGGTTCATATAACACATTTGTGGTTGACTTAACTGTTTTGTTTACTTGAACCAAGTTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCT</genome_strand>
        <mrna_strand>TGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTG............................................................................GCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTG.................................................................................................................................................................................................................................................................................................................................CACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT...................................................................................................TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271181" ref_strand="+" ref_description="SGN-E271181 [cLEM-5-G11]">
      <seq>attggcagggaaaaacaaagatggtaataaaaacagtagatcttttgaagaatgaaattcccatagaggaggaatcagtagtcatcactgaagatattaaggctggacttgttcttgtggacataatcaatggattttgtactgttggagctggaaatctggcaccaagagagcctaacaggcagatcagtgaaatgattgatgaatcatcaaggcttgctagagcgttttgtgacaagaaattgccagttcttgcctttcttgattcacatcaacctgataaacttgaacacccatatccttctcactgcatcactggcactgatgaatccaacttggttcctgcactaagatgggtggaggaggaaccaaatgttaccatcaggcgcaaagattgttatgatggctatattggttcctttcaggaggatggctctaatgtatttgttgattgggtgaagaacaaccaagttcaacttttgttggtggtaggggtgtgcacggatatttgtgtgctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="119367" stop="117751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119067" g_stop="118907" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118906" i_stop="118831" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118830" g_stop="118647" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="345" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118646" i_stop="118326" i_length="321">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118325" g_stop="118192" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="479" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.128" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118092" g_stop="118051" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="521" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E271181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119067" e_stop="118907"/>
          <exon e_start="118830" e_stop="118647"/>
          <exon e_start="118325" e_stop="118192"/>
          <exon e_start="118092" e_stop="118051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCAGGGAAAAACAAAGATGGTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTGGTACTTACAATTAAACTTGTTCTTTGTTTTATTACTTAATTAACTAGTTGATTTTTTTTTTGCTTGTAAATCATAGGCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTGGTACTAATTTTACTACTAAAAATAATGGTTATTTCATCAATGGGAAATTTGTGATATAGAATATGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTTGTATGTACTCACTCTCTTTTGCTTCTCTAAAACTTCCTATTATATGGTTCATATAACACATTTGTGGTTGACTTAACTGTTTTGTTTACTTGAACCAAGTTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGAC</genome_strand>
        <mrna_strand>ATTGGCAGGGAAAAACAAAGATGGTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTG............................................................................GCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTG.................................................................................................................................................................................................................................................................................................................................CACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT...................................................................................................TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303627" ref_strand="+" ref_description="SGN-E303627 [cLEY-6-M23]">
      <seq>agtagtcatcactgaagatattaaggctggacttgttcttgtggacataatcaatggattttgtactgttggagctggaaatctggtacttacaattaaacttgttctttgttttattacttaattaactagttgattttttttttgcttgtaaatcataggcaccaagagagcctaacaggcagatcagtgaaatgattgatgaatcatcaaggcttgctagagcgttttgtgacaagaaattgccagttcttgcctttcttgattcacatcaacctgataaacttgaacacccatatccttctcactgcatcactggcactgatgaatccaacttggttcctggtactaattttactactaaaaataatggttatttcatcaatgggaaatttgtgatatagaatatgatttcccaccacatgtgatggaaaaacagattctcacgaaaatagtagaaaactttactattttttgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="119291" stop="118210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118991" g_stop="118510" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E303627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118991" e_stop="118510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTGGTACTTACAATTAAACTTGTTCTTTGTTTTATTACTTAATTAACTAGTTGATTTTTTTTTTGCTTGTAAATCATAGGCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTGGTACTAATTTTACTACTAAAAATAATGGTTATTTCATCAATGGGAAATTTGTGATATAGAATATGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATG</genome_strand>
        <mrna_strand>AGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTGGTACTTACAATTAAACTTGTTCTTTGTTTTATTACTTAATTAACTAGTTGATTTTTTTTTTGCTTGTAAATCATAGGCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTGGTACTAATTTTACTACTAAAAATAATGGTTATTTCATCAATGGGAAATTTGTGATATAGAATATGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297661" ref_strand="+" ref_description="SGN-E297661 [cLET-28-J1]">
      <seq>ggaaaaacaaagatgtgtaataataacagtagatcttttgaagaatggaattgccatagaggaggaatcagtagtcatcactgaagatattaaggctggacttgttcttgtggacataatcaatggattttgtactgctggagctgcaaatctggccacccaagagagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="119359" stop="118606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119059" g_stop="118907" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118906" i_stop="118831" i_length="76">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118830" g_stop="118815" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="172" r_length="18" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E297661" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119059" e_stop="118907"/>
          <exon e_start="118830" e_stop="118815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAACAAAGATG-GTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTGGTACTTACAATTAAACTTGTTCTTTGTTTTATTACTTAATTAACTAGTTGATTTTTTTTTTGCTTGTAAATCATAGG-CA-CCAAGAGAGCCTA</genome_strand>
        <mrna_strand>GGAAAAACAAAGATGTGTAATAATAACAGTAGATCTTTTGAAGAATGGAATTGCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGCTGGAGCTGCAAATCTG............................................................................GCCACCCAAGAGAGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245736" ref_strand="+" ref_description="SGN-E245736 [cLEF-48-K24]">
      <seq>gtcgtctcttagaaattcgggaaaagttgctgtaatggcctcagaagaagatgagtgtcctgtgtggataactgatgatggcccgtttgtggttgtcatggatcctttagatggttcccgaaatatagatgcctcaatacccactgggacgatatttgggatttacagacgtcttgtggaaattgatcatttgccggtggaggaaaaggctttactaaactgccttcagagtggatcaaagcttgttgcagcagcttatgttctctattcgtcagccacaatactctgtgctagctttggttctggaacacatgcattcacattggatcatacaaccggagatttcctcttgacacatcctaacatcaacattcctcctcgagggcaaatttattcagttaatgatgctcggtattttgactggcctgaaggattaaggcagtatattgatacgataagacaagggaaaggacaacatcctaagaagtactcagccaggtatatatgttctctagtggctgattttcatcggactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="121193" stop="119965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120893" g_stop="120511" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120510" i_stop="120419" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120418" g_stop="120265" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="537" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E245736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120893" e_stop="120511"/>
          <exon e_start="120418" e_stop="120265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTTGACACATCCTAACATCAACATTCCTCCTCGAGGTATTGCTATATCATAAGTTTGTTCCTCCAAATACGTTTTTGCATATTACACCTTCTAAACTGATAGTTACATTGTTGACATTTTCTGGCAGGGCAAATTTATTCAGTTAATGATGCTCGGTATTTTGACTGGCCTGAAGGATTAAGGCAGTATATTGATACGATAAGACAAGGGAAAGGACAACATCCTAAGAAGTACTCAGCCAGGTATATATGTTCTCTAGTGGCTGATTTTCATCGGACTCT</genome_strand>
        <mrna_strand>GTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTTGACACATCCTAACATCAACATTCCTCCTCGAG............................................................................................GGCAAATTTATTCAGTTAATGATGCTCGGTATTTTGACTGGCCTGAAGGATTAAGGCAGTATATTGATACGATAAGACAAGGGAAAGGACAACATCCTAAGAAGTACTCAGCCAGGTATATATGTTCTCTAGTGGCTGATTTTCATCGGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319667" ref_strand="+" ref_description="SGN-E319667 [cTOB-12-L15]">
      <seq>ttatattgtcgtctcttagaaattcgggaaaagttgctgtaatggcctcagaagaagatgagtgtcctgtgtggataactgatgatggcccgtttgtggttgtcatggatcctttagatggttcccgaaatatagatgcctcaatacccactgggacgatatttgggatttacagacgtcttgtggaaattgatcatttgccggtggaggaaaaggctttactaaactgccttcagagtggatcaaagcttgttgcagcagcttatgttctctattcgtcagccacaatactctgtgctagctttggttctggaacacatgcattcacattggatcatacaaccggagatttcctcttgacacatcctaacatcaacattcctcctcgagggcaaatttattcagttaatgatgctcggtattttgactggcctgaaggattaaggcagtatattgatacgataagacaagggaaaggacaacatcctaagaagtactcagccaggtatatatgttctctagtggctgattttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="121200" stop="119972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120900" g_stop="120511" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120510" i_stop="120419" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120418" g_stop="120272" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="537" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E319667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120900" e_stop="120511"/>
          <exon e_start="120418" e_stop="120272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTTGACACATCCTAACATCAACATTCCTCCTCGAGGTATTGCTATATCATAAGTTTGTTCCTCCAAATACGTTTTTGCATATTACACCTTCTAAACTGATAGTTACATTGTTGACATTTTCTGGCAGGGCAAATTTATTCAGTTAATGATGCTCGGTATTTTGACTGGCCTGAAGGATTAAGGCAGTATATTGATACGATAAGACAAGGGAAAGGACAACATCCTAAGAAGTACTCAGCCAGGTATATATGTTCTCTAGTGGCTGATTTTCATC</genome_strand>
        <mrna_strand>TTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTTGACACATCCTAACATCAACATTCCTCCTCGAG............................................................................................GGCAAATTTATTCAGTTAATGATGCTCGGTATTTTGACTGGCCTGAAGGATTAAGGCAGTATATTGATACGATAAGACAAGGGAAAGGACAACATCCTAAGAAGTACTCAGCCAGGTATATATGTTCTCTAGTGGCTGATTTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334752" ref_strand="+" ref_description="SGN-E334752 [cTOE-3-E20]">
      <seq>tgcaatttttcctcaaaactacaattttgtacctttttgtactgaaaatatggcttcttctccattttctggagggttaattaactccagggttgattcaccaattgcaattggctgtaaaaatgcttcagtagattctgctaatagtgggttttcaacactgatggagtatatgggtaaaggaggggttgatgtgggtgatgacttggtgttattgtttggtcacttagaatatgcctccaagaaaattgctgctcttgttgcttgccctttcaattccagcctcaacaacaatgttgccattggaaatacggggacttcttctgatagagataagcccaagcctcttgatattgtttcgaatgagattatattgtcgtctcttagaaattcgggaaaagttgctgtaatggcctcagaagaagatgagtgtcctgtgtggataactgatgatggcccgtttgtggttgtcatggatcctttagatggttcccgaaatatagatgcctcaatacccactgggacgatatttgggatttacagacgtcttgtggaaattgatcatttgccggtggaggaaaaggctatactaaactgccttcagagtggatcaaagcttgttgcagcagcttatgttctctattcgtcagccacaatactctgtgctagctttggttctggaacacatgcattcacattgnatcatacaaccggagatatcctcttgacacatcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="122125" stop="120231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121825" g_stop="121465" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121464" i_stop="120908" i_length="557">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120907" g_stop="120531" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="738" r_length="377" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E334752" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121825" e_stop="121465"/>
          <exon e_start="120907" e_stop="120531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATTTTTCCTCAAAACTACAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCGGTCTGTCTTTTGGGAATTTTTGGTTATTTGATTGTCACCATAAATTGTTGATGTTGCTTTTCTATAATTATTTGATTTCATAATCTATAAGATTCCTGTTATTATAAGCAATAATATAACAATAATAACATAGCCAATTGAATCCCATGTATGCAAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTAGAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTAACAGTACGTTGTTCTGTTTTTTTTCCTCCTTTTTCTGTTTGTGGGATCTTCCATTAATGAATTAGGAAGAAGATCATTGTGTCTTCTCTAGTCTTAATGGATCCAAGAATAGTCTCATGTTCTAAGACCTTTTTATGTATGTTTGTTCAGAATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTTGACACATCCTAA</genome_strand>
        <mrna_strand>TGCAATTTTTCCTCAAAACTACAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTATACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGNATCATACAACCGGAGATATCCTCTTGACACATCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324650" ref_strand="+" ref_description="SGN-E324650 [cTOC-9-B19]">
      <seq>tcatgtcattaaccagcggtgtgagactttggggattcttttaacaaatgagattatattgtcgtctcttagaaattcgggaaaagttgctgtaatggcctcagaagaagatgagtgtcctgtgtggataactgatgatggcccgtttgtggttgtcatggatcctttagatggttcccgaaatatagatgcctcaatacccactgggacgatatttgggatttacagacgtcttgtggaaattgatcatttgccggtggaggaaaaggctttactaaactgccttcagagtggatcaaagcttgttgcagcagcttatgttctctattcgtcagccacaatactctgtgctagctttggttctggaacacatgcattcacattggatcatacaaccggagatttcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="121210" stop="120243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121100" g_stop="121055" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121054" i_stop="120908" i_length="147">
            <donor d_prob="0.970" d_score="0.91"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120907" g_stop="120543" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="411" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E324650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121100" e_stop="121055"/>
          <exon e_start="120907" e_stop="120543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTAACAGTACGTTGTTCTGTTTTTTTTCCTCCTTTTTCTGTTTGTGGGATCTTCCATTAATGAATTAGGAAGAAGATCATTGTGTCTTCTCTAGTCTTAATGGATCCAAGAATAGTCTCATGTTCTAAGACCTTTTTATGTATGTTTGTTCAGAATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTT</genome_strand>
        <mrna_strand>TCATGTCATTAACCAGCGGTGTGAGACTTTGGGGATTCTTTTAACA...................................................................................................................................................AATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345748" ref_strand="+" ref_description="SGN-E345748 [cTOF-18-N18]">
      <seq>ctctcctcaccaaaccctgcaatttttcctcaaaactaccaattttgtacctttttgtactgaaaatatggcttcttctccattttctggagggttaattaactccagggttgattcaccaattgcaattggctgtaaaaatgcttcagtagattctgctaatagtgggttttcaacactgatggagtatatgggtaaaggaggggttgatgtgggtgatgacttggtgttattgtttggtcacttagaatatgcctccaagaaaattgctgctcttgttgcttgccctttcaattccagcctcaacaacaatgttgccattggaaatacggggacttcttctgatagagataagcccaagcctcttgatattgtttcgaatgagattatattgtcgtctcttagaaattcgggaaaagttgctgtaatggcctcagaagaagatgagtgtcctgtgtggataactgatgatggcccgtttgtggttgtcatggatcctttagatggttcccgaaatatagatgcctcaatacccactgggacgatatttgggatttacagacgtcttgtggaaattgatcatttgccggtggaggaaaaggctttactaaactgccttcagagtggatcaaagcttgntgcagcagcttatgttctctattcgtcagccacaatactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="122142" stop="120307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121842" g_stop="121465" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121464" i_stop="120908" i_length="557">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120907" g_stop="120607" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="680" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E345748" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121842" e_stop="121465"/>
          <exon e_start="120907" e_stop="120607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTA-CAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCGGTCTGTCTTTTGGGAATTTTTGGTTATTTGATTGTCACCATAAATTGTTGATGTTGCTTTTCTATAATTATTTGATTTCATAATCTATAAGATTCCTGTTATTATAAGCAATAATATAACAATAATAACATAGCCAATTGAATCCCATGTATGCAAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTAGAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTAACAGTACGTTGTTCTGTTTTTTTTCCTCCTTTTTCTGTTTGTGGGATCTTCCATTAATGAATTAGGAAGAAGATCATTGTGTCTTCTCTAGTCTTAATGGATCCAAGAATAGTCTCATGTTCTAAGACCTTTTTATGTATGTTTGTTCAGAATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCT</genome_strand>
        <mrna_strand>CTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTACCAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGNTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332461" ref_strand="+" ref_description="SGN-E332461 [cTOD-17-N11]">
      <seq>atttcttccctaaattttccaccaagaaccaaactctcctcaccaaaccctgcaatttttcctcaaaactacaattttgtacctttttgtactgaaaatatggcttcttctccattttctggagggttaattaactccagggttgattcaccaattgcaattggctgtaaaaatgcttcagtagattctgctaatagtgggttttcaacactgatggagtatatgggtaaaggaggggttgatgtgggtgatgacttggtgttattgtttggtcacttagaatatgcctccaagaaaattgctgctcttgttgcttgccctttcaattccagcctcaacaacaatgttgccattggaaatacggggacttcttctgatagagataagcccaagcctcttgatattgtttcgaatgagattatattgtcgtctcttagaaattcgggaaaagttgctgtaatggcctcagaagaagatgagtgtcctgtgtggataactgatgatggcccgtttgtggttgtcatggatcctttagatggttcccgaaatatagatgcctcaatacccactgggacgatatttgggatttacagacgtcttgtggaaattgatcatttgcccggtggaggaaaaggctttactaaactgccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="122175" stop="120367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121875" g_stop="121465" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121464" i_stop="120908" i_length="557">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120907" g_stop="120667" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="653" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E332461" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121875" e_stop="121465"/>
          <exon e_start="120907" e_stop="120667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTCCCTAAATTTTCCACCAAGAACCAAACTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTACAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCGGTCTGTCTTTTGGGAATTTTTGGTTATTTGATTGTCACCATAAATTGTTGATGTTGCTTTTCTATAATTATTTGATTTCATAATCTATAAGATTCCTGTTATTATAAGCAATAATATAACAATAATAACATAGCCAATTGAATCCCATGTATGCAAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTAGAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTAACAGTACGTTGTTCTGTTTTTTTTCCTCCTTTTTCTGTTTGTGGGATCTTCCATTAATGAATTAGGAAGAAGATCATTGTGTCTTCTCTAGTCTTAATGGATCCAAGAATAGTCTCATGTTCTAAGACCTTTTTATGTATGTTTGTTCAGAATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTG-CCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTC</genome_strand>
        <mrna_strand>ATTTCTTCCCTAAATTTTCCACCAAGAACCAAACTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTACAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310043" ref_strand="+" ref_description="SGN-E310043 [cLEZ-8-M15]">
      <seq>accaaactctcctcaccaaaccctgcaatttttcctcaaaactaccaattttgtacctttttgtacctgaaaatatggcttcttctccattttctggagggttaattaactccagggttgattcaccaattgcaattggctgtaaaaatgcttcagtagattctgctaatagtgggttttcaacactgatggagtatatgggtaaaggaggggttgatgtgggtgatgacttggtgttattgtttggtcacttagaatatgcctccaagaaaattgctgctcttgttgcttgccctttcaattccagcctcaacaacaatgttgccattggaaatacggggacttcttctgatagagataagcccaagcctcttgatattgtttcgaatgagattatattgtcgtctcttagaaattcgggaaaagttgctgtaatggcctcagaagaagatgagtgtcctgtgtggataactgatgatggcccgtttgtggttgtcatggatcctttagatggttcccgaaatatagatgcctcaatacccactgggacgatatttgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="122148" stop="120432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121848" g_stop="121465" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121464" i_stop="120908" i_length="557">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120907" g_stop="120732" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="562" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E310043" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121848" e_stop="121465"/>
          <exon e_start="120907" e_stop="120732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTA-CAATTTTGTACCTTTTTGTA-CTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCGGTCTGTCTTTTGGGAATTTTTGGTTATTTGATTGTCACCATAAATTGTTGATGTTGCTTTTCTATAATTATTTGATTTCATAATCTATAAGATTCCTGTTATTATAAGCAATAATATAACAATAATAACATAGCCAATTGAATCCCATGTATGCAAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTAGAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTAACAGTACGTTGTTCTGTTTTTTTTCCTCCTTTTTCTGTTTGTGGGATCTTCCATTAATGAATTAGGAAGAAGATCATTGTGTCTTCTCTAGTCTTAATGGATCCAAGAATAGTCTCATGTTCTAAGACCTTTTTATGTATGTTTGTTCAGAATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGAT</genome_strand>
        <mrna_strand>ACCAAACTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTACCAATTTTGTACCTTTTTGTACCTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247821" ref_strand="+" ref_description="SGN-E247821 [cLEF-47-C21]">
      <seq>catcgaccatttcttccctaaattttccaccaagaaccaaactctcctcaccaaaccctgcaatttttcctcaaaactacaattttgtacctttttgtactgaaaatatggcttcttctccattttctggagggttaattaactccagggttgattcaccaattgcaattggctgtaaaaatgcttcagtagattctgctaatagtgggttttcaacactgatggagtatatgggtaaaggaggggttgatgtgggtgatgacttggtgttattgtttggtcacttagaatatgcctccaagaaaattgctgctcttgttgcttgccctttcaattccagcctcaacaacaatgttgccattggaaatacggggacttcttctgatagagataagcccaagcctcttgatattgtttcgaatgagattatattgtcgtctcttagaaattcgggaaaagttgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="122183" stop="120561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121883" g_stop="121465" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121464" i_stop="120908" i_length="557">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120907" g_stop="120861" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="466" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E247821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121883" e_stop="121465"/>
          <exon e_start="120907" e_stop="120861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGACCATTTCTTCCCTAAATTTTCCACCAAGAACCAAACTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTACAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCGGTCTGTCTTTTGGGAATTTTTGGTTATTTGATTGTCACCATAAATTGTTGATGTTGCTTTTCTATAATTATTTGATTTCATAATCTATAAGATTCCTGTTATTATAAGCAATAATATAACAATAATAACATAGCCAATTGAATCCCATGTATGCAAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTAGAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTAACAGTACGTTGTTCTGTTTTTTTTCCTCCTTTTTCTGTTTGTGGGATCTTCCATTAATGAATTAGGAAGAAGATCATTGTGTCTTCTCTAGTCTTAATGGATCCAAGAATAGTCTCATGTTCTAAGACCTTTTTATGTATGTTTGTTCAGAATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGT</genome_strand>
        <mrna_strand>CATCGACCATTTCTTCCCTAAATTTTCCACCAAGAACCAAACTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTACAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239890" ref_strand="+" ref_description="SGN-E239890 [cLED-29-P4]">
      <seq>aaaccttttaacttctactgcactgtatagagagacccaataaagtggaattgggattgatgaattattgattgattgatgttatttataggttgctgttaaattaggtccttgctctgataccttgttaaattaggtctttcgtgtaactcacatctcaaaagctagttcaaagagagtaggattgtccaagccttataaggagttcactcatgtcattaaccatcggtgtgagacttttgtcattctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="121610" stop="120758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121310" g_stop="121058" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-E239890" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121310" e_stop="121058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTAGAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTA</genome_strand>
        <mrna_strand>AAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTATAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214774" ref_strand="+" ref_description="SGN-E214774 [cLEC-79-C10]">
      <seq>tactacactaatgcacgaaaactctgttgccgcctccgtccccaattcctccaccgccgccggtgccgttggtgttcccgccgtggtcaacaactcacaccttccaccacaaccattagcgagacgtgttgtgttccgacttctgtgccatgcttcacgcgtcggtggagttatcggaaaatcagggtccattattagacaactacaacaagacacctccgctaagattcacattgatgtgtccgcaccaaacgaccacaatcgactcattgtagtagtagcccctgcttcagtaaacaagaggataaggctactgggccccattggggataaccagcgtaatgaagaaattgatgaaatagaggtttcggctgcacaagaagcacttgttagggtttttgagagagttatagaagtaacagcggaaaataatggactagttttgggtgtggagaatgttgtgtcctgtaggttattagtaaaggggaatcaagtgggggctttgatgggcaaaggtggaaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="124965" stop="126090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125265" g_stop="125790" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-E214774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125265" e_stop="125790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTACACTAATGCACGAAAACTCTGTTGCCGCCTCCGTCCCCAATTCCTCCACCGCCGCCGGTGCCGTTGGTGTTCCCGCCGTGGTCAACAACTCACACCTTCCACCACAACCATTAGCGAGACGTGTTGTGTTCCGACTTCTGTGCCATGCTTCACGCGTCGGTGGAGTTATCGGAAAATCAGGGTCCATTATTAGACAACTACAACAAGACACCTCCGCTAAGATTCACATTGATGTGTCCGCACCAAACGACCACAATCGACTCATTGTAGTAGTAGCCCCTGCTTCAGTAAACAAGAGGATAAGGCTACTGGGCCCCATTGGGGATAACCAGCGTAATGAAGAAATTGATGAAATAGAGGTTTCGGCTGCACAAGAAGCACTTGTTAGGGTTTTTGAGAGAGTTATAGAAGTAACAGCGGAAAATAATGGACTAGTTTTGGGTGTGGAGAATGTTGTGTCCTGTAGGTTATTAGTAAAGGGGAATCAAGTGGGGGCTTTGATGGGCAAAGGTGGAAAAGTA</genome_strand>
        <mrna_strand>TACTACACTAATGCACGAAAACTCTGTTGCCGCCTCCGTCCCCAATTCCTCCACCGCCGCCGGTGCCGTTGGTGTTCCCGCCGTGGTCAACAACTCACACCTTCCACCACAACCATTAGCGAGACGTGTTGTGTTCCGACTTCTGTGCCATGCTTCACGCGTCGGTGGAGTTATCGGAAAATCAGGGTCCATTATTAGACAACTACAACAAGACACCTCCGCTAAGATTCACATTGATGTGTCCGCACCAAACGACCACAATCGACTCATTGTAGTAGTAGCCCCTGCTTCAGTAAACAAGAGGATAAGGCTACTGGGCCCCATTGGGGATAACCAGCGTAATGAAGAAATTGATGAAATAGAGGTTTCGGCTGCACAAGAAGCACTTGTTAGGGTTTTTGAGAGAGTTATAGAAGTAACAGCGGAAAATAATGGACTAGTTTTGGGTGTGGAGAATGTTGTGTCCTGTAGGTTATTAGTAAAGGGGAATCAAGTGGGGGCTTTGATGGGCAAAGGTGGAAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>133</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7578" PGL_stop="6999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7578" e_stop="7556"/>
            <exon e_start="7478" e_stop="7208"/>
            <exon e_start="7024" e_stop="6999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7578" e_stop="7556" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7555" i_stop="7479" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7478" e_stop="7208" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7207" i_stop="7025" i_length="183"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7024" e_stop="6999" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7578" stop="7556"/>
              <exon start="7478" stop="7208"/>
              <exon start="7024" stop="6999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCCCTACACAATCCTTATGAG : GGAGACAAGTATATGAAGCGTTTAAACGAACTAAAGAAAGAAGTGAAGAAGATGATGATGACGGTGGAGGGATCACATGATGAAGAGTTAGAGAAGTTGGAGTTGATTGATAATTTAGAGAGGCTCGGAGTGAGTTACCACTTTAAAGATGAAATTATGCAAATATTGAGGAGCATTAATATTAATATTAATATAGCCCCACCAGATTCATTATATACCACATCTTTGAAATTTAGACTCTTGAGACAACATGGTTTTCATATCTCACAAG : ATGTATTGAAAGATTTCAAAGACGAG</gDNA_template>
            <first_frame> N  P  Y  T  I  L  M  R :   E  T  S  I  *  S  V  *  T  N  *  R  K  K  *  R  R  *  *  *  R  W  R  D  H  M  M  K  S  *  R  S  W  S  *  L  I  I  *  R  G  S  E  *  V  T  T  L  K  M  K  L  C  K  Y  *  G  A  L  I  L  I  L  I  *  P  H  Q  I  H  Y  I  P  H  L  *  N  L  D  S  *  D  N  M  V  F  I  S  H  K  :  M  Y  *  K  I  S  K  T   </first_frame>
            <second_frame>  I  P  T  Q  S  L  *   : G  R  Q  V  Y  E  A  F  K  R  T  K  E  R  S  E  E  D  D  D  D  G  G  G  I  T  *  *  R  V  R  E  V  G  V  D  *  *  F  R  E  A  R  S  E  L  P  L  *  R  *  N  Y  A  N  I  E  E  H  *  Y  *  Y  *  Y  S  P  T  R  F  I  I  Y  H  I  F  E  I  *  T  L  E  T  T  W  F  S  Y  L  T  R :   C  I  E  R  F  Q  R  R  </second_frame>
            <third_frame>   S  L  H  N  P  Y  E  :  G  D  K  Y  M  K  R  L  N  E  L  K  K  E  V  K  K  M  M  M  T  V  E  G  S  H  D  E  E  L  E  K  L  E  L  I  D  N  L  E  R  L  G  V  S  Y  H  F  K  D  E  I  M  Q  I  L  R  S  I  N  I  N  I  N  I  A  P  P  D  S  L  Y  T  T  S  L  K  F  R  L  L  R  Q  H  G  F  H  I  S  Q   : D  V  L  K  D  F  K  D  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7576" stop="7556"/>
                    <exon start="7478" stop="7208"/>
                    <exon start="7024" stop="6999"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLHNPYEGDKYMKRLNELKKEVKKMMMTVEGSHDEELEKLELIDNLERLGVSYHFKDEIMQILRSINININIAPPDSLYTTSLKFRLLRQHGFHISQDVLKDFKDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12182" PGL_stop="11693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12182" e_stop="12036"/>
            <exon e_start="11951" e_stop="11693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.891"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.891">
            <gDNA_exon_boundary e_start="12182" e_stop="12036" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12035" i_stop="11952" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="11951" e_stop="11693" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12182" stop="12036"/>
              <exon start="11951" stop="11693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATGTTTATTAGCAAACCAAATTTAATTTCGAAATTTGAGGTTTCAAAATCCTGCATATCTAATTCCCCAATTAGACGATCTGGAAATTATCAACCTTCTATACGGGACTATAATCATATTCAATCACTAAAGAATCATTATTCT : GACGAGAAATTCATTAGAAGCCGCAATGAGCTGAAGATGGAAGTCAAGATTATGCTTAGTGATCGTAACATGAAGCAATTGGAGCAGTTGGAGATTATTGATAATCTGCAAAGGCTTGGATTATCTTATCACTTTGAAGATGAAATTTCCAGTATTCTGAATAATTTAAGTGACAAAGATAGCAAAAGAGATCACTTGTATGCTAAAGCTCTCGAATTTAGGCTCTTGAGATAACATGGATTTAACATTGTTTCACAAG</gDNA_template>
            <first_frame> S  M  F  I  S  K  P  N  L  I  S  K  F  E  V  S  K  S  C  I  S  N  S  P  I  R  R  S  G  N  Y  Q  P  S  I  R  D  Y  N  H  I  Q  S  L  K  N  H  Y  S  :  D  E  K  F  I  R  S  R  N  E  L  K  M  E  V  K  I  M  L  S  D  R  N  M  K  Q  L  E  Q  L  E  I  I  D  N  L  Q  R  L  G  L  S  Y  H  F  E  D  E  I  S  S  I  L  N  N  L  S  D  K  D  S  K  R  D  H  L  Y  A  K  A  L  E  F  R  L  L  R  *  H  G  F  N  I  V  S  Q  </first_frame>
            <second_frame>  Q  C  L  L  A  N  Q  I  *  F  R  N  L  R  F  Q  N  P  A  Y  L  I  P  Q  L  D  D  L  E  I  I  N  L  L  Y  G  T  I  I  I  F  N  H  *  R  I  I  I  L :   T  R  N  S  L  E  A  A  M  S  *  R  W  K  S  R  L  C  L  V  I  V  T  *  S  N  W  S  S  W  R  L  L  I  I  C  K  G  L  D  Y  L  I  T  L  K  M  K  F  P  V  F  *  I  I  *  V  T  K  I  A  K  E  I  T  C  M  L  K  L  S  N  L  G  S  *  D  N  M  D  L  T  L  F  H  K </second_frame>
            <third_frame>   N  V  Y  *  Q  T  K  F  N  F  E  I  *  G  F  K  I  L  H  I  *  F  P  N  *  T  I  W  K  L  S  T  F  Y  T  G  L  *  S  Y  S  I  T  K  E  S  L  F   : *  R  E  I  H  *  K  P  Q  *  A  E  D  G  S  Q  D  Y  A  *  *  S  *  H  E  A  I  G  A  V  G  D  Y  *  *  S  A  K  A  W  I  I  L  S  L  *  R  *  N  F  Q  Y  S  E  *  F  K  *  Q  R  *  Q  K  R  S  L  V  C  *  S  S  R  I  *  A  L  E  I  T  W  I  *  H  C  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12182" stop="12036"/>
                    <exon start="11951" stop="11718"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMFISKPNLISKFEVSKSCISNSPIRRSGNYQPSIRDYNHIQSLKNHYSDEKFIRSRNELKMEVKIMLSDRNMKQLEQLEIIDNLQRLGLSYHFEDEISSILNNLSDKDSKRDHLYAKALEFRLLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14771" PGL_stop="14074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14771" e_stop="14074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="14771" e_stop="14074" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14771" stop="14074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14771" stop="14233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14771" stop="14299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14731" stop="14383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCACTTCCCATGAACTTCAAAAAGAATTATGTGCATTTATATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAATTTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTTTAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATCTCTGGCCCTTTGACTTTAGTTAGACTTAGTTAGGTTAGATAGGTGCCCTAACGCGCCTTAATTCGTTAGGTGGCGACTCCAAAAAACTCGAAATCCCAAAAGAGTTGTTAGGTCGCGCACAAAACCCGTTT</gDNA_template>
            <first_frame> T  T  S  H  E  L  Q  K  E  L  C  A  F  I  C  N  C  L  C  A  Y  V  *  T  K  Y  F  K  S  F  V  K  N  I  N  F  L  D  R  P  Q  I  K  I  V  S  M  V  E  E  H  D  Q  *  Y  R  G  I  I  P  I  K  K  *  T  F  L  K  K  N  K  N  S  Y  S  *  T  Y  Q  F  L  T  L  L  L  H  I  L  I  A  *  Y  L  P  I  L  S  I  T  *  C  R  M  S  K  I  N  K  M  S  L  I  V  Y  L  L  S  S  P  S  F  T  Y  L  N  K  *  E  *  *  S  *  L  F  R  I  C  Y  H  L  V  R  L  N  K  L  I  N  D  L  D  C  Y  L  Y  P  H  I  D  C  M  R  Y  G  R  D  P  H  L  W  T  S  R  D  A  *  H  L  P  L  E  V  I  *  T  L  T  L  I  S  G  P  L  T  L  V  R  L  S  *  V  R  *  V  P  *  R  A  L  I  R  *  V  A  T  P  K  N  S  K  S  Q  K  S  C  *  V  A  H  K  T  R   </first_frame>
            <second_frame>  P  L  P  M  N  F  K  K  N  Y  V  H  L  Y  V  I  V  Y  V  P  T  C  E  L  N  I  L  N  H  L  L  K  T  *  I  F  *  T  D  L  K  S  K  L  F  L  W  W  R  S  T  I  N  N  I  V  A  S  S  L  *  R  N  K  H  F  *  K  K  I  K  I  P  I  H  K  L  I  N  F  *  L  Y  F  C  T  Y  *  L  L  N  I  C  Q  F  C  L  *  H  S  V  V  C  Q  K  *  I  K  *  A  *  L  F  I  Y  C  H  H  L  A  L  H  I  *  I  N  K  N  N  S  L  N  C  F  V  F  V  I  T  *  *  D  *  I  N  *  *  T  T  L  I  A  T  C  T  P  T  *  I  A  *  D  T  A  G  T  H  T  C  G  P  R  G  M  P  N  T  F  P  S  R  *  F  E  P  L  P  *  S  L  A  L  *  L  *  L  D  L  V  R  L  D  R  C  P  N  A  P  *  F  V  R  W  R  L  Q  K  T  R  N  P  K  R  V  V  R  S  R  T  K  P  V  </second_frame>
            <third_frame>   H  F  P  *  T  S  K  R  I  M  C  I  Y  M  *  L  F  M  C  L  R  V  N  *  I  F  *  I  I  C  *  K  H  K  F  F  R  P  T  S  N  Q  N  C  F  Y  G  G  G  A  R  S  I  I  S  W  H  H  P  Y  K  E  I  N  I  F  K  K  K  *  K  F  L  F  I  N  L  S  I  F  N  F  T  F  A  H  T  N  C  L  I  F  A  N  F  V  Y  N  I  V  S  Y  V  K  N  K  *  N  E  L  N  C  L  F  I  V  I  T  *  L  Y  I  S  K  *  I  R  I  I  V  L  I  V  S  Y  L  L  S  L  S  K  I  K  *  I  N  K  R  P  *  L  L  L  V  P  P  H  R  L  H  E  I  R  P  G  P  T  L  V  D  L  E  G  C  L  T  P  S  P  R  G  N  L  N  P  Y  P  N  L  W  P  F  D  F  S  *  T  *  L  G  *  I  G  A  L  T  R  L  N  S  L  G  G  D  S  K  K  L  E  I  P  K  E  L  L  G  R  A  Q  N  P  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0245N21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="22332" PGL_stop="21831"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22332" e_stop="21831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="22332" e_stop="21831" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22332" stop="21831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCCTTTATTTGAATTAAAATTTGATAGAAAAACATCTTCCAAAGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCTTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</gDNA_template>
            <first_frame> T  P  L  F  E  L  K  F  D  R  K  T  S  S  K  A  T  Q  M  L  D  E  V  W  M  E  S  R  S  S  C  *  R  *  S  L  P  L  C  F  H  *  G  P  L  S  P  P  R  *  S  R  R  C  K  L  S  L  L  L  W  L  A  I  T  P  S  S  R  L  R  S  H  Q  Y  C  L  P  *  N  L  L  I  E  M  I  D  T  M  A  V  W  V  S  S  M  D  S  S  T  H  L  *  V  V  A  N  R  A  I  L  R  W  C  I  Y  N  P  N  Q  K  W  W  N  V  E  Q  A  V  *  V  R  L  S  L  V  I  *  P  P  N  L  S  Q  A  R  N  R  T  R  P  S  Y  L  *  F  F  G  *  T  K  V  A  T  Q  Y  Y  </first_frame>
            <second_frame>  L  L  Y  L  N  *  N  L  I  E  K  H  L  P  K  L  P  R  C  S  T  R  S  G  W  S  R  G  P  V  A  D  A  D  L  C  L  F  A  S  T  R  A  P  F  L  L  L  V  D  H  D  V  A  N  F  P  F  F  F  G  *  R  *  P  L  Q  V  V  *  D  L  I  N  I  V  S  H  E  T  C  *  S  K  *  L  I  Q  W  R  Y  G  F  L  Q  W  I  V  V  P  I  S  R  W  S  P  I  E  P  F  F  G  G  V  F  I  T  Q  T  K  S  G  G  M  S  N  R  L  Y  R  F  D  Y  P  L  *  F  S  P  Q  T  F  P  K  L  E  T  E  P  G  H  H  I  Y  D  F  L  A  E  P  R  L  Q  L  N  I  T </second_frame>
            <third_frame>   S  F  I  *  I  K  I  *  *  K  N  I  F  Q  S  Y  P  D  A  R  R  G  L  D  G  V  E  V  Q  L  L  T  L  I  F  A  S  L  L  P  L  G  P  P  F  S  S  S  L  I  T  T  L  Q  T  F  P  S  S  L  V  S  D  N  P  F  K  S  S  E  I  S  S  I  L  S  P  M  K  P  A  D  R  N  D  *  Y  N  G  G  M  G  F  F  N  G  *  *  Y  P  S  L  G  G  R  Q  S  S  H  S  S  V  V  Y  L  *  P  K  P  K  V  V  E  C  R  T  G  C  I  G  S  T  I  P  C  N  L  A  P  K  P  F  P  S  S  K  P  N  Q  A  I  I  S  M  I  F  W  L  N  Q  G  C  N  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22303" stop="22073"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNIFQSYPDARRGLDGVEVQLLTLIFASLLPLGPPFSSSLITTLQTFPSSLVSDNPFKSSEISSILSPMKPADRND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27860" PGL_stop="31156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27860" e_stop="28326"/>
            <exon e_start="30244" e_stop="30393"/>
            <exon e_start="30475" e_stop="30642"/>
            <exon e_start="30901" e_stop="31156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27860" e_stop="28326" e_length="467"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30244" e_stop="30393" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30475" e_stop="30642" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30643" i_stop="30900" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="30901" e_stop="31156" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27860" stop="28326"/>
              <exon start="30244" stop="30393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27860" stop="28234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27875" stop="28326"/>
              <exon start="30244" stop="30393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27929" stop="28326"/>
              <exon start="30244" stop="30393"/>
              <exon start="30475" stop="30642"/>
              <exon start="30901" stop="30976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27934" stop="28326"/>
              <exon start="30244" stop="30393"/>
              <exon start="30475" stop="30642"/>
              <exon start="30901" stop="30985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27948" stop="28323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27962" stop="28326"/>
              <exon start="30244" stop="30393"/>
              <exon start="30475" stop="30592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27964" stop="28326"/>
              <exon start="30244" stop="30393"/>
              <exon start="30475" stop="30556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28070" stop="28326"/>
              <exon start="30244" stop="30393"/>
              <exon start="30475" stop="30642"/>
              <exon start="30901" stop="31156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28138" stop="28326"/>
              <exon start="30244" stop="30393"/>
              <exon start="30475" stop="30642"/>
              <exon start="30901" stop="31142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28154" stop="28326"/>
              <exon start="30244" stop="30393"/>
              <exon start="30475" stop="30642"/>
              <exon start="30901" stop="30974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28154" stop="28326"/>
              <exon start="30244" stop="30393"/>
              <exon start="30475" stop="30616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28154" stop="28326"/>
              <exon start="30244" stop="30393"/>
              <exon start="30475" stop="30601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAAAATTGAGAAAAATCTCCATCTCTCTCTAGACCTTTCTCTAGAGAGAGAATCTATATCTATCTATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG : ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG : ATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAG : GAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTCTCAAGGGTAAATTGTGATTGCAATTGGTCAAAAAGTGTAAATAGGAGATGATATGGTGTTAGATGAACTTTTAGACTGTTTTGGGACTTTTGAACTTATTAGACATCCATTACATGTCCTTATCAACAATCTTATATTAAACTTTTTAACTATTGAAATTGATAACTAAGT</gDNA_template>
            <first_frame> K  T  K  L  R  K  I  S  I  S  L  *  T  F  L  *  R  E  N  L  Y  L  S  I  Y  I  Y  I  Y  I  S  V  S  E  R  I  *  E  D  F  F  F  F  I  S  E  K  S  V  I  N  *  *  W  K  E  K  N  L  Q  F  Y  Y  V  Q  R  I  Q  N  T  *  R  R  N  T  G  V  I  S  G  F  S  *  E  C  W  R  R  K  G  K  R  G  T  F  S  G  W  L  M  A  S  F  R  R  M  M  R  S  E  N  S  M  D  L  *  S  P  E  V  A  M  T  R  M  V  M  I  C  G  S  A  S  Y  S  I  C  S  K  K  L  I  Q  *  R  R  K  F  W  V  F  A  L  D  T  R :   Y  *  D  D  H  W  V  A  L  *  R  E  L  L  M  V  G  T  L  V  *  L  L  L  I  Y  Q  R  Q  S  N  S  T  L  S  N  Y  L  H  F  C  K  L  S  S  V  I  A  M  R :   S  V  N  F  H  Q  R  Q  R  *  W  H  G  P  T  K  L  E  L  K  C  L  D  M  V  I  I  *  W  A  F  K  V  T  L  N  T  P  K  T  F  F  S  I  S  S  I  V  F  F  N  T  T  L  L  R :   R  A  W  L  M  W  P  R  Q  R  L  K  S  V  N  Q  T  G  S  N  G  R  N  Y  A  L  A  F  S  R  V  N  C  D  C  N  W  S  K  S  V  N  R  R  *  Y  G  V  R  *  T  F  R  L  F  W  D  F  *  T  Y  *  T  S  I  T  C  P  Y  Q  Q  S  Y  I  K  L  F  N  Y  *  N  *  *  L  S </first_frame>
            <second_frame>  K  Q  N  *  E  K  S  P  S  L  S  R  P  F  S  R  E  R  I  Y  I  Y  L  Y  I  Y  I  Y  I  Y  Q  *  V  R  G  F  K  K  I  S  S  S  L  F  L  K  N  L  *  L  I  N  N  G  R  K  K  I  C  S  S  I  M  C  R  G  F  R  I  R  E  E  E  I  R  G  L  F  R  G  F  R  E  N  A  G  G  G  R  G  N  V  G  L  F  P  G  G  S  W  R  V  S  D  G  *  *  D  R  R  I  R  W  I  C  N  H  R  K  L  Q  *  R  A  W  *  *  F  V  D  L  Q  V  T  Q  S  A  Q  K  N  *  F  N  E  E  E  S  F  G  Y  L  L  W  T  P   : D  I  R  T  I  I  G  W  H  Y  R  E  S  Y  *  W  L  G  H  W  C  D  Y  C  *  F  I  N  V  K  A  I  Q  L  S  Q  I  T  C  I  F  A  N  Y  R  V  S  S  R  *   : D  P  *  T  S  T  K  G  R  G  N  G  M  V  Q  Q  N  W  N  *  N  V  *  I  W  *  S  Y  N  G  H  S  R  S  P  *  I  H  Q  R  H  S  S  P  S  H  R  S  S  S  S  T  Q  P  Y  *   : G  E  H  G  *  C  G  Q  G  K  G  *  R  V  *  T  R  Q  G  A  M  E  E  I  M  H  *  L  S  Q  G  *  I  V  I  A  I  G  Q  K  V  *  I  G  D  D  M  V  L  D  E  L  L  D  C  F  G  T  F  E  L  I  R  H  P  L  H  V  L  I  N  N  L  I  L  N  F  L  T  I  E  I  D  N  *   </second_frame>
            <third_frame>   N  K  I  E  K  N  L  H  L  S  L  D  L  S  L  E  R  E  S  I  S  I  Y  I  Y  I  Y  I  Y  I  S  E  *  E  D  L  R  R  F  L  L  L  Y  F  *  K  I  C  N  *  L  I  M  E  G  K  K  F  A  V  L  L  C  A  E  D  S  E  Y  V  K  K  K  Y  G  G  Y  F  G  V  F  V  R  M  L  A  E  E  G  E  T  W  D  F  F  R  V  A  H  G  E  F  P  T  D  D  E  I  G  E  F  D  G  F  V  I  T  G  S  C  N  D  A  H  G  N  D  L  W  I  C  K  L  L  N  L  L  K  K  I  D  S  M  K  K  K  V  L  G  I  C  F  G  H  Q  :  I  L  G  R  S  L  G  G  T  I  E  R  A  T  N  G  W  D  I  G  V  T  T  V  N  L  S  T  S  K  Q  F  N  S  L  K  L  P  A  F  L  Q  I  I  E  C  H  R  D  E  :  I  R  E  L  P  P  K  A  E  V  M  A  W  S  N  K  T  G  I  E  M  F  R  Y  G  D  H  I  M  G  I  Q  G  H  P  E  Y  T  K  D  I  L  L  H  L  I  D  R  L  L  Q  H  N  L  I  E  :  E  S  M  A  D  V  A  K  A  K  V  E  E  C  E  P  D  R  E  Q  W  K  K  L  C  I  S  F  L  K  G  K  L  *  L  Q  L  V  K  K  C  K  *  E  M  I  W  C  *  M  N  F  *  T  V  L  G  L  L  N  L  L  D  I  H  Y  M  S  L  S  T  I  L  Y  *  T  F  *  L  L  K  L  I  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28012" stop="28326"/>
                    <exon start="30244" stop="30393"/>
                    <exon start="30475" stop="30642"/>
                    <exon start="30901" stop="31002"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIMEGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDFFRVAHGEFPTDDEIGEFDGFVITGSCNDAHGNDLWICKLLNLLKKIDSMKKKVLGICFGHQILGRSLGGTIERATNGWDIGVTTVNLSTSKQFNSLKLPAFLQIIECHRDEIRELPPKAEVMAWSNKTGIEMFRYGDHIMGIQGHPEYTKDILLHLIDRLLQHNLIEESMADVAKAKVEECEPDREQWKKLCISFLKGKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27860" e_stop="28427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="27860" e_stop="28427" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27860" stop="28234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27948" stop="28323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27980" stop="28427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233493" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAAAATTGAGAAAAATCTCCATCTCTCTCTAGACCTTTCTCTAGAGAGAGAATCTATATCTATCTATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAA</gDNA_template>
            <first_frame> K  T  K  L  R  K  I  S  I  S  L  *  T  F  L  *  R  E  N  L  Y  L  S  I  Y  I  Y  I  Y  I  S  V  S  E  R  I  *  E  D  F  F  F  F  I  S  E  K  S  V  I  N  *  *  W  K  E  K  N  L  Q  F  Y  Y  V  Q  R  I  Q  N  T  *  R  R  N  T  G  V  I  S  G  F  S  *  E  C  W  R  R  K  G  K  R  G  T  F  S  G  W  L  M  A  S  F  R  R  M  M  R  S  E  N  S  M  D  L  *  S  P  E  V  A  M  T  R  M  V  M  I  C  G  S  A  S  Y  S  I  C  S  K  K  L  I  Q  *  R  R  K  F  W  V  F  A  L  D  T  R  Y  F  F  *  F  T  I  L  L  I  S  N  S  I  F  N  R  K  F  F  L  F  I  L  L  D  S  L  H  D  M  S  K  </first_frame>
            <second_frame>  K  Q  N  *  E  K  S  P  S  L  S  R  P  F  S  R  E  R  I  Y  I  Y  L  Y  I  Y  I  Y  I  Y  Q  *  V  R  G  F  K  K  I  S  S  S  L  F  L  K  N  L  *  L  I  N  N  G  R  K  K  I  C  S  S  I  M  C  R  G  F  R  I  R  E  E  E  I  R  G  L  F  R  G  F  R  E  N  A  G  G  G  R  G  N  V  G  L  F  P  G  G  S  W  R  V  S  D  G  *  *  D  R  R  I  R  W  I  C  N  H  R  K  L  Q  *  R  A  W  *  *  F  V  D  L  Q  V  T  Q  S  A  Q  K  N  *  F  N  E  E  E  S  F  G  Y  L  L  W  T  P  G  I  S  F  N  L  L  F  Y  S  S  A  I  L  F  L  I  V  S  S  F  Y  L  F  Y  *  I  H  Y  M  I  C  L  K </second_frame>
            <third_frame>   N  K  I  E  K  N  L  H  L  S  L  D  L  S  L  E  R  E  S  I  S  I  Y  I  Y  I  Y  I  Y  I  S  E  *  E  D  L  R  R  F  L  L  L  Y  F  *  K  I  C  N  *  L  I  M  E  G  K  K  F  A  V  L  L  C  A  E  D  S  E  Y  V  K  K  K  Y  G  G  Y  F  G  V  F  V  R  M  L  A  E  E  G  E  T  W  D  F  F  R  V  A  H  G  E  F  P  T  D  D  E  I  G  E  F  D  G  F  V  I  T  G  S  C  N  D  A  H  G  N  D  L  W  I  C  K  L  L  N  L  L  K  K  I  D  S  M  K  K  K  V  L  G  I  C  F  G  H  Q  V  F  L  L  I  Y  Y  F  T  H  Q  Q  F  Y  F  *  S  *  V  L  F  I  Y  F  T  R  F  I  T  *  Y  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28012" stop="28374"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIMEGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDFFRVAHGEFPTDDEIGEFDGFVITGSCNDAHGNDLWICKLLNLLKKIDSMKKKVLGICFGHQVFLLIYYFTHQQFYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28869" e_stop="29708"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="28869" e_stop="29708" e_length="840"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28869" stop="29708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577807" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGC</gDNA_template>
            <first_frame> S  Y  V  H  *  W  K  F  Q  F  R  *  L  L  F  C  K  T  L  F  C  A  M  R  L  F  T  S  W  D  I  T  I  L  Y  E  N  L  L  T  Y  L  D  K  Y  Y  S  N  S  C  N  F  R  V  T  K  L  C  L  N  S  S  L  P  Y  V  G  K  N  K  I  F  L  C  F  F  F  W  H  N  T  *  I  S  F  I  T  C  F  I  Y  K  I  E  *  I  D  K  F  I  L  C  F  T  C  I  L  Y  R  V  G  Y  I  C  V  L  I  L  F  C  T  S  L  S  I  *  M  S  T  K  V  K  L  K  K  M  Y  I  C  V  L  L  P  I  H  F  T  C  Y  Y  P  *  K  I  K  L  K  F  G  R  I  T  *  E  D  P  S  G  P  K  A  K  R  G  V  S  E  I  W  D  H  M  P  K  T  E  *  E  V  G  T  I  L  G  *  S  *  *  I  L  D  F  G  P  L  T  L  S  N  *  *  L  *  T  A  H  I  F  W  D  S  I  W  M  D  S  C  H  V  F  L  F  N  F  S  P  V  V  V  V  A  F  C  H  I  L  T  S  P  N  Y  V  L  Y  D  K  C  R  P  I  Q  K  N  K  I  K  I  T  R  *  N  *  N  *  L  S  I  F  *  G </first_frame>
            <second_frame>  L  T  Y  I  N  G  N  F  N  L  G  N  C  Y  F  V  K  L  F  S  V  L  C  D  C  L  L  V  G  T  L  L  F  Y  M  K  I  C  *  H  I  W  T  N  I  I  L  I  V  A  I  S  V  L  R  S  Y  V  L  I  H  L  S  H  M  L  E  K  I  K  F  S  F  V  F  F  S  G  I  I  H  K  Y  H  S  *  L  V  L  S  I  K  S  N  K  *  I  N  L  S  C  V  L  H  V  Y  Y  T  V  *  D  I  Y  V  Y  L  F  Y  F  A  Q  V  *  V  F  K  C  Q  L  K  S  S  *  K  K  C  I  F  V  Y  Y  F  Q  S  I  L  L  V  I  I  L  K  K  *  N  *  N  L  G  G  L  H  E  R  T  L  V  V  Q  K  Q  K  E  V  *  V  R  F  G  T  I  C  Q  K  L  S  E  K  L  E  L  F  W  V  R  V  S  E  F  W  I  L  V  P  S  H  F  Q  I  N  N  Y  R  Q  P  I  Y  F  G  I  L  F  G  W  I  L  V  T  C  S  S  L  I  F  H  Q  *  *  *  *  P  F  V  I  Y  L  L  H  L  T  M  Y  Y  M  I  N  A  V  Q  F  K  K  I  K  *  K  S  L  V  K  T  K  T  N  *  A  S  S  R   </second_frame>
            <third_frame>   L  R  T  L  M  E  I  S  I  *  V  I  V  I  L  *  N  S  F  L  C  Y  A  T  V  Y  *  L  G  H  Y  Y  F  I  *  K  S  A  N  I  F  G  Q  I  L  F  *  *  L  Q  F  P  C  Y  E  V  M  S  *  F  I  S  P  I  C  W  K  K  *  N  F  P  L  F  F  F  L  A  *  Y  I  N  I  I  H  N  L  F  Y  L  *  N  R  I  N  R  *  I  Y  P  V  F  Y  M  Y  I  I  P  C  R  I  Y  M  C  T  Y  S  I  L  H  K  F  K  Y  L  N  V  N  *  S  Q  V  K  K  N  V  Y  L  C  I  T  S  N  P  F  Y  L  L  L  S  L  K  N  K  I  K  I  W  E  D  Y  M  R  G  P  *  W  S  K  S  K  K  R  C  E  *  D  L  G  P  Y  A  K  N  *  V  R  S  W  N  Y  S  G  L  E  L  V  N  F  G  F  W  S  P  H  T  F  K  L  I  I  I  D  S  P  Y  I  L  G  F  Y  L  D  G  F  L  S  R  V  P  L  *  F  F  T  S  S  S  S  S  L  L  S  Y  T  Y  F  T  *  L  C  T  I  *  *  M  P  S  N  S  K  K  *  N  K  N  H  S  L  K  L  K  L  I  K  H  L  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28905" stop="29114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFCKTLFCAMRLFTSWDITILYENLLTYLDKYYSNSCNFRVTKLCLNSSLPYVGKNKIFLCFFFWHNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="30529" PGL_stop="30259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30529" e_stop="30259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="30529" e_stop="30259" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30529" stop="30259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCAGTTTTGTTGGACCATGCCATTACCTCTGCCTTTGGTGGAAGTTCACGGATCTAATTCCAAAACAACCTACACATTTTTAGAAAATTTTTGTACTAAACTAGTATTCAACTAGAGAGGAATTTGATACAAACCTCATCGCGATGACACTCGATAATTTGCAAAAATGCAGGTAATTTGAGAGAGTTGAATTGCTTTGACGTTGATAAATTAACAGTAGTCACACCAATGTCCCAACCATTAGTAGCTCTCTCTATAGTGCCACCCAA</gDNA_template>
            <first_frame> F  Q  F  C  W  T  M  P  L  P  L  P  L  V  E  V  H  G  S  N  S  K  T  T  Y  T  F  L  E  N  F  C  T  K  L  V  F  N  *  R  G  I  *  Y  K  P  H  R  D  D  T  R  *  F  A  K  M  Q  V  I  *  E  S  *  I  A  L  T  L  I  N  *  Q  *  S  H  Q  C  P  N  H  *  *  L  S  L  *  C  H  P  </first_frame>
            <second_frame>  S  S  F  V  G  P  C  H  Y  L  C  L  W  W  K  F  T  D  L  I  P  K  Q  P  T  H  F  *  K  I  F  V  L  N  *  Y  S  T  R  E  E  F  D  T  N  L  I  A  M  T  L  D  N  L  Q  K  C  R  *  F  E  R  V  E  L  L  *  R  *  *  I  N  S  S  H  T  N  V  P  T  I  S  S  S  L  Y  S  A  T  Q </second_frame>
            <third_frame>   P  V  L  L  D  H  A  I  T  S  A  F  G  G  S  S  R  I  *  F  Q  N  N  L  H  I  F  R  K  F  L  Y  *  T  S  I  Q  L  E  R  N  L  I  Q  T  S  S  R  *  H  S  I  I  C  K  N  A  G  N  L  R  E  L  N  C  F  D  V  D  K  L  T  V  V  T  P  M  S  Q  P  L  V  A  L  S  I  V  P  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0245N21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="47835" PGL_stop="49441"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47835" e_stop="48252"/>
            <exon e_start="49138" e_stop="49153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.974"/>
          <exon-only e_score="0.812"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="47835" e_stop="48252" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48253" i_stop="49137" i_length="885"/>
          </intron>
          <exon e_serial="2" e_score="0.812">
            <gDNA_exon_boundary e_start="49138" e_stop="49153" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47835" stop="48252"/>
              <exon start="49138" stop="49153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCATTGCTCTCTTGCTACTTTAACAATATATTAATATTTCGGCAAATATTCAAGTGCTTTTCTCCGCTATTTTCCTGCTTTGTTCGAGTACAAGGTGAATCATTTTGTTTTGTTTAACAGGTTTCATATTTGAAGTTCAAGTTGAAGATTAACTGAAGAAGGATTTGTTTATTTGTTTGAATGTATATATGTCTATATATTTTATTTTTTCCGCTATTTTATTTATTCGAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCTTACTTGCTCATTATTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAC : AATAAAAAATAATAAA</gDNA_template>
            <first_frame> S  H  C  S  L  A  T  L  T  I  Y  *  Y  F  G  K  Y  S  S  A  F  L  R  Y  F  P  A  L  F  E  Y  K  V  N  H  F  V  L  F  N  R  F  H  I  *  S  S  S  *  R  L  T  E  E  G  F  V  Y  L  F  E  C  I  Y  V  Y  I  F  Y  F  F  R  Y  F  I  Y  S  N  V  V  T  I  V  T  L  R  S  Y  N  K  V  I  W  G  S  S  R  G  G  G  F  I  C  L  L  A  H  Y  F  F  *  K  S  C  L  *  V  C  L  *  P  P  R  F  D  I  C  R  C  Y  N  L  I  N  F  Q  F  A  *   : Q  *  K  I  I   </first_frame>
            <second_frame>  L  I  A  L  L  L  L  *  Q  Y  I  N  I  S  A  N  I  Q  V  L  F  S  A  I  F  L  L  C  S  S  T  R  *  I  I  L  F  C  L  T  G  F  I  F  E  V  Q  V  E  D  *  L  K  K  D  L  F  I  C  L  N  V  Y  M  S  I  Y  F  I  F  S  A  I  L  F  I  R  M  L  *  Q  L  *  P  *  D  H  I  I  K  L  F  G  G  R  L  G  E  G  D  L  Y  A  Y  L  L  I  I  F  F  R  N  H  A  Y  R  F  V  F  N  H  L  D  L  I  F  V  G  V  I  I  *  S  I  F  N  L  L  D  :  N  K  K  *  *  </second_frame>
            <third_frame>   S  L  L  S  C  Y  F  N  N  I  L  I  F  R  Q  I  F  K  C  F  S  P  L  F  S  C  F  V  R  V  Q  G  E  S  F  C  F  V  *  Q  V  S  Y  L  K  F  K  L  K  I  N  *  R  R  I  C  L  F  V  *  M  Y  I  C  L  Y  I  L  F  F  P  L  F  Y  L  F  E  C  C  N  N  C  N  P  K  I  I  *  *  S  Y  L  G  V  V  *  G  R  G  I  Y  M  L  T  C  S  L  F  F  L  E  I  M  P  I  G  L  S  L  T  T  *  I  *  Y  L  *  V  L  *  S  N  Q  F  S  I  C  L  T :   I  K  N  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0245N21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49136" e_stop="49441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="49136" e_stop="49441" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49136" stop="49441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATAAAAAATAATAAACTTGGTTGTTTATTATTGCTGTCTTCTAGCCTCGCATATTTAAATTAATAAAATAGCCTTAATTGTTTTATACTTGTTATCACTTAGCAAGCATATTAATGAATAATAATAAAGTGACCTTGATTGCTACTTGTAACCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATTCTCTGGCTCGTTGACCTTAGTTAGACTTAGTTAGGTTAGATAGGTGCCCT</gDNA_template>
            <first_frame> *  I  K  N  N  K  L  G  C  L  L  L  L  S  S  S  L  A  Y  L  N  *  *  N  S  L  N  C  F  I  L  V  I  T  *  Q  A  Y  *  *  I  I  I  K  *  P  *  L  L  L  V  T  P  H  R  L  H  E  I  R  P  G  P  T  L  V  D  L  E  G  C  L  T  P  S  P  R  G  N  L  N  P  Y  P  N  S  L  A  R  *  P  *  L  D  L  V  R  L  D  R  C  P </first_frame>
            <second_frame>  K  *  K  I  I  N  L  V  V  Y  Y  C  C  L  L  A  S  H  I  *  I  N  K  I  A  L  I  V  L  Y  L  L  S  L  S  K  H  I  N  E  *  *  *  S  D  L  D  C  Y  L  *  P  H  I  D  C  M  R  Y  G  R  D  P  H  L  W  T  S  R  D  A  *  H  L  P  L  E  V  I  *  T  L  T  L  I  L  W  L  V  D  L  S  *  T  *  L  G  *  I  G  A   </second_frame>
            <third_frame>   N  K  K  *  *  T  W  L  F  I  I  A  V  F  *  P  R  I  F  K  L  I  K  *  P  *  L  F  Y  T  C  Y  H  L  A  S  I  L  M  N  N  N  K  V  T  L  I  A  T  C  N  P  T  *  I  A  *  D  T  A  G  T  H  T  C  G  P  R  G  M  P  N  T  F  P  S  R  *  F  E  P  L  P  *  F  S  G  S  L  T  L  V  R  L  S  *  V  R  *  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0245N21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="48037" e_stop="48252"/>
            <exon e_start="49137" e_stop="49153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.935"/>
          <exon-only e_score="0.824"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="48037" e_stop="48252" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48253" i_stop="49136" i_length="884"/>
          </intron>
          <exon e_serial="2" e_score="0.824">
            <gDNA_exon_boundary e_start="49137" e_stop="49153" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48037" stop="48252"/>
              <exon start="49137" stop="49153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATTTTTTCCGCTATTTTATTTATTCGAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCTTACTTGCTCATTATTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAC : AAATAAAAAATAATAAA</gDNA_template>
            <first_frame> F  I  F  S  A  I  L  F  I  R  M  L  *  Q  L  *  P  *  D  H  I  I  K  L  F  G  G  R  L  G  E  G  D  L  Y  A  Y  L  L  I  I  F  F  R  N  H  A  Y  R  F  V  F  N  H  L  D  L  I  F  V  G  V  I  I  *  S  I  F  N  L  L  D  :  K  *  K  I  I   </first_frame>
            <second_frame>  L  F  F  P  L  F  Y  L  F  E  C  C  N  N  C  N  P  K  I  I  *  *  S  Y  L  G  V  V  *  G  R  G  I  Y  M  L  T  C  S  L  F  F  L  E  I  M  P  I  G  L  S  L  T  T  *  I  *  Y  L  *  V  L  *  S  N  Q  F  S  I  C  L  T :   N  K  K  *  *  </second_frame>
            <third_frame>   Y  F  F  R  Y  F  I  Y  S  N  V  V  T  I  V  T  L  R  S  Y  N  K  V  I  W  G  S  S  R  G  G  G  F  I  C  L  L  A  H  Y  F  F  *  K  S  C  L  *  V  C  L  *  P  P  R  F  D  I  C  R  C  Y  N  L  I  N  F  Q  F  A  *   : Q  I  K  N  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0245N21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="55340" PGL_stop="62795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55340" e_stop="55724"/>
            <exon e_start="56669" e_stop="56752"/>
            <exon e_start="56839" e_stop="56972"/>
            <exon e_start="58891" e_stop="58998"/>
            <exon e_start="59360" e_stop="59465"/>
            <exon e_start="61408" e_stop="61479"/>
            <exon e_start="61607" e_stop="62032"/>
            <exon e_start="62777" e_stop="62794"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.065" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55340" e_stop="55724" e_length="385"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55725" i_stop="56668" i_length="944"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56669" e_stop="56752" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.065">
            <gDNA_intron_boundary i_start="56753" i_stop="56838" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56839" e_stop="56972" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56973" i_stop="58890" i_length="1918"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58891" e_stop="58998" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.908">
            <gDNA_intron_boundary i_start="58999" i_stop="59359" i_length="361"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59360" e_stop="59465" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.946">
            <gDNA_intron_boundary i_start="59466" i_stop="61407" i_length="1942"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61408" e_stop="61479" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61480" i_stop="61606" i_length="127"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="61607" e_stop="62032" e_length="426"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62033" i_stop="62776" i_length="744"/>
          </intron>
          <exon e_serial="8" e_score="0.833">
            <gDNA_exon_boundary e_start="62777" e_stop="62794" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55340" stop="55724"/>
              <exon start="56669" stop="56752"/>
              <exon start="56839" stop="56972"/>
              <exon start="58891" stop="58976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55345" stop="55724"/>
              <exon start="56669" stop="56752"/>
              <exon start="56839" stop="56972"/>
              <exon start="58891" stop="58998"/>
              <exon start="59360" stop="59462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55345" stop="55724"/>
              <exon start="56669" stop="56752"/>
              <exon start="56839" stop="56972"/>
              <exon start="58891" stop="58998"/>
              <exon start="59360" stop="59440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55349" stop="55724"/>
              <exon start="56669" stop="56723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56873" stop="56972"/>
              <exon start="58891" stop="58998"/>
              <exon start="59360" stop="59465"/>
              <exon start="61408" stop="61479"/>
              <exon start="61607" stop="61768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61431" stop="61479"/>
              <exon start="61607" stop="62032"/>
              <exon start="62777" stop="62794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241699" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61433" stop="61479"/>
              <exon start="61607" stop="61925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGCTAACATGTACGGACGGGAGACGATGAACGCTGCACTTCACCAAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAG : GTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTGCTGTAAATGTGGTTCCCCAAAGTCAGAGG : GCTTCAGGTGACTTTCCTGGAAGATTAAATCAACCGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAG : GATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTGGTCAAGAAGAGCAGGAAACATC : ATGTAGACATTGCAATATTAGTTCGAAATCCACTCCTATGATGCGTCGGGGACCAGCTGGCCCAAGGTCTCTTTGTAATGCATGTGGACTCAAGTGGGCCAATAAG : GGAATTTTAAGAGATCTTTCTAAAGTTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAG : AGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCTGTTGTACTATCCGCCAAAATTAGATTGTAAATAGTAAAATATTGTACTCTTAGGCATCCGACATTGTTTCTCGGAGTTTTAGTGTTTTATTCTGGTGTTCAAATGTATAATTGAAATCTGAAACTTGTCCCACGAATCGATACATGCAGGCTTAAAAGTATCTTTAAATAGTTTTTGTTTGCTATATGACTACAAAGGTGGAAGAGCATACTGTCTTTGCATTCTTATCTCTATTTTATAAAAATATACGTAAATTTTACTTTT : ATTTAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> Q  S  *  H  V  R  T  G  D  D  E  R  C  T  S  P  R  *  T  P  A  N  S  D  R  R  R  R  *  *  R  R  R  R  C  C  R  W  R  W  Q  W  W  G  R  N  R  V  Y  G  Q  P  Y  S  S  H  S  L  R  P  T  S  S  L  S  F  S  R  A  S  Q  R  R  R  R  R  F  Y  G  D  E  W  C  G  R  C  F  S  *  R  L  V  W  S  S  F  R  N  C  S  Y  C  W  *  W  S  F  R  S  A  Y  A  V  V  S  R  R  S  V  R  F  *  C  R  F  T  *  K   : G  S  G  G  A  V  T  V  G  G  I  R  S  P  S  W  Y  P  C  C  K  C  G  S  P  K  S  E   : G  F  R  *  L  S  W  K  I  K  S  T  G  K  S  C  F  F  K  S  F  *  G  K  E  E  R  T  V  F  *  *  K  D  P  L  Y  C  A  E  G  S  C  D  E  :  D  A  A  Q  E  R  S  V  Y  I  C  Q  V  N  T  *  R  S  R  F  F  C  R  L  E  *  R  L  W  S  R  R  A  G  N  I  :  M  *  T  L  Q  Y  *  F  E  I  H  S  Y  D  A  S  G  T  S  W  P  K  V  S  L  *  C  M  W  T  Q  V  G  Q  *   : G  N  F  K  R  S  F  *  S  S  S  S  W  N  S  G  P  N  C  E  T  W  *  T   : E  P  W  *  T  *  W  L  G  *  H  G  C  Y  H  H  S  G  *  Q  Q  P  S  G  V  T  A  *  T  V  R  E  N  P  S  L  Q  L  L  W  W  Q  L  M  L  K  *  D  E  *  L  K  F  I  C  C  T  I  R  Q  N  *  I  V  N  S  K  I  L  Y  S  *  A  S  D  I  V  S  R  S  F  S  V  L  F  W  C  S  N  V  *  L  K  S  E  T  C  P  T  N  R  Y  M  Q  A  *  K  Y  L  *  I  V  F  V  C  Y  M  T  T  K  V  E  E  H  T  V  F  A  F  L  S  L  F  Y  K  N  I  R  K  F  Y  F   : Y  L  K  K  K  K  </first_frame>
            <second_frame>  R  A  N  M  Y  G  R  E  T  M  N  A  A  L  H  Q  D  R  H  Q  Q  T  Q  I  D  D  D  D  D  D  D  V  V  A  A  V  G  G  G  G  S  G  G  G  G  I  E  S  M  D  N  P  T  P  H  I  R  Y  D  Q  H  H  H  S  H  S  H  A  L  H  N  G  G  A  G  G  S  M  E  M  N  G  V  E  G  V  S  H  N  A  L  Y  G  P  P  S  E  I  V  P  T  A  G  S  G  A  S  D  Q  L  T  L  S  F  Q  G  E  V  Y  V  F  D  A  V  S  P  E  K  :  V  Q  A  V  L  L  L  L  G  G  Y  E  V  P  P  G  I  P  A  V  N  V  V  P  Q  S  Q  R  :  A  S  G  D  F  P  G  R  L  N  Q  P  E  R  A  A  S  L  N  R  F  R  E  K  R  K  E  R  C  F  D  K  K  I  R  Y  T  V  R  K  E  V  A  M  R :   M  Q  R  K  K  G  Q  F  T  S  A  K  S  I  P  D  E  V  G  S  S  A  D  W  N  E  G  S  G  Q  E  E  Q  E  T  S :   C  R  H  C  N  I  S  S  K  S  T  P  M  M  R  R  G  P  A  G  P  R  S  L  C  N  A  C  G  L  K  W  A  N  K  :  G  I  L  R  D  L  S  K  V  P  A  P  G  T  Q  D  Q  T  A  K  P  G  E  Q  :  S  H  G  E  P  N  G  S  D  D  M  A  A  I  I  T  P  D  D  N  N  P  V  G  *  P  L  E  L  *  G  R  I  L  L  C  N  Y  C  G  G  S  *  C  *  S  E  M  N  N  *  N  S  S  V  V  L  S  A  K  I  R  L  *  I  V  K  Y  C  T  L  R  H  P  T  L  F  L  G  V  L  V  F  Y  S  G  V  Q  M  Y  N  *  N  L  K  L  V  P  R  I  D  T  C  R  L  K  S  I  F  K  *  F  L  F  A  I  *  L  Q  R  W  K  S  I  L  S  L  H  S  Y  L  Y  F  I  K  I  Y  V  N  F  T  F  :  I  *  K  K  K  K </second_frame>
            <third_frame>   E  L  T  C  T  D  G  R  R  *  T  L  H  F  T  K  I  D  T  S  K  L  R  S  T  T  T  M  M  T  T  S  S  L  L  S  V  A  V  A  V  V  G  E  E  *  S  L  W  T  T  L  L  L  T  F  A  T  T  N  I  I  T  L  I  L  T  R  F  T  T  A  A  P  A  V  L  W  R  *  M  V  W  K  V  F  L  I  T  P  C  M  V  L  L  P  K  L  F  L  L  L  V  V  E  L  P  I  S  L  R  C  R  F  K  A  K  C  T  F  L  M  P  F  H  L  K  R :   F  R  R  C  C  Y  C  W  G  D  T  K  S  L  L  V  S  L  L  *  M  W  F  P  K  V  R  G :   L  Q  V  T  F  L  E  D  *  I  N  R  K  E  L  L  L  *  I  V  L  G  K  R  G  K  N  G  V  L  I  K  R  S  A  I  L  C  G  R  K  L  R  *   : G  C  S  A  R  K  V  S  L  H  L  P  S  Q  Y  L  T  K  *  V  L  L  Q  I  G  M  K  A  L  V  K  K  S  R  K  H   : H  V  D  I  A  I  L  V  R  N  P  L  L  *  C  V  G  D  Q  L  A  Q  G  L  F  V  M  H  V  D  S  S  G  P  I  R :   E  F  *  E  I  F  L  K  F  Q  L  L  E  L  R  T  K  L  R  N  L  V  N  R :   A  M  V  N  L  M  A  R  M  T  W  L  L  S  S  L  R  M  T  T  T  Q  W  G  D  R  L  N  C  E  G  E  S  F  S  A  I  I  V  V  A  V  D  V  E  V  R  *  I  I  E  I  H  L  L  Y  Y  P  P  K  L  D  C  K  *  *  N  I  V  L  L  G  I  R  H  C  F  S  E  F  *  C  F  I  L  V  F  K  C  I  I  E  I  *  N  L  S  H  E  S  I  H  A  G  L  K  V  S  L  N  S  F  C  L  L  Y  D  Y  K  G  G  R  A  Y  C  L  C  I  L  I  S  I  L  *  K  Y  T  *  I  L  L  L :   F  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55341" stop="55724"/>
                    <exon start="56669" stop="56752"/>
                    <exon start="56839" stop="56972"/>
                    <exon start="58891" stop="58998"/>
                    <exon start="59360" stop="59465"/>
                    <exon start="61408" stop="61479"/>
                    <exon start="61607" stop="61681"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RANMYGRETMNAALHQDRHQQTQIDDDDDDDVVAAVGGGGSGGGGIESMDNPTPHIRYDQHHHSHSHALHNGGAGGSMEMNGVEGVSHNALYGPPSEIVPTAGSGASDQLTLSFQGEVYVFDAVSPEKVQAVLLLLGGYEVPPGIPAVNVVPQSQRASGDFPGRLNQPERAASLNRFREKRKERCFDKKIRYTVRKEVAMRMQRKKGQFTSAKSIPDEVGSSADWNEGSGQEEQETSCRHCNISSKSTPMMRRGPAGPRSLCNACGLKWANKGILRDLSKVPAPGTQDQTAKPGEQSHGEPNGSDDMAAIITPDDNNPVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55340" e_stop="55724"/>
            <exon e_start="56669" e_stop="56752"/>
            <exon e_start="56839" e_stop="56972"/>
            <exon e_start="58891" e_stop="58998"/>
            <exon e_start="59360" e_stop="59465"/>
            <exon e_start="61408" e_stop="61479"/>
            <exon e_start="61607" e_stop="61938"/>
            <exon e_start="62777" e_stop="62795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.065" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55340" e_stop="55724" e_length="385"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55725" i_stop="56668" i_length="944"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56669" e_stop="56752" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.065">
            <gDNA_intron_boundary i_start="56753" i_stop="56838" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56839" e_stop="56972" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56973" i_stop="58890" i_length="1918"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58891" e_stop="58998" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.908">
            <gDNA_intron_boundary i_start="58999" i_stop="59359" i_length="361"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59360" e_stop="59465" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.946">
            <gDNA_intron_boundary i_start="59466" i_stop="61407" i_length="1942"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61408" e_stop="61479" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61480" i_stop="61606" i_length="127"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="61607" e_stop="61938" e_length="332"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61939" i_stop="62776" i_length="838"/>
          </intron>
          <exon e_serial="8" e_score="0.789">
            <gDNA_exon_boundary e_start="62777" e_stop="62795" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55340" stop="55724"/>
              <exon start="56669" stop="56752"/>
              <exon start="56839" stop="56972"/>
              <exon start="58891" stop="58976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55345" stop="55724"/>
              <exon start="56669" stop="56752"/>
              <exon start="56839" stop="56972"/>
              <exon start="58891" stop="58998"/>
              <exon start="59360" stop="59462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55345" stop="55724"/>
              <exon start="56669" stop="56752"/>
              <exon start="56839" stop="56972"/>
              <exon start="58891" stop="58998"/>
              <exon start="59360" stop="59440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55349" stop="55724"/>
              <exon start="56669" stop="56723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56873" stop="56972"/>
              <exon start="58891" stop="58998"/>
              <exon start="59360" stop="59465"/>
              <exon start="61408" stop="61479"/>
              <exon start="61607" stop="61768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61433" stop="61479"/>
              <exon start="61607" stop="61938"/>
              <exon start="62777" stop="62795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61433" stop="61479"/>
              <exon start="61607" stop="61925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGCTAACATGTACGGACGGGAGACGATGAACGCTGCACTTCACCAAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAG : GTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTGCTGTAAATGTGGTTCCCCAAAGTCAGAGG : GCTTCAGGTGACTTTCCTGGAAGATTAAATCAACCGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAG : GATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTGGTCAAGAAGAGCAGGAAACATC : ATGTAGACATTGCAATATTAGTTCGAAATCCACTCCTATGATGCGTCGGGGACCAGCTGGCCCAAGGTCTCTTTGTAATGCATGTGGACTCAAGTGGGCCAATAAG : GGAATTTTAAGAGATCTTTCTAAAGTTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAG : AGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCTGTTGTACTATCCGCCAAAATTAGATTGTAAATAGTAAAATATTGTACTCTTAGGCATCCGACATTGTTTCTCGGAGTTTTAGTGTTTTATTCTGGTGTTCAAATGTATAATTGAAATCTGAAACTTGTCCCACGAATCGATACATGCAGGCTTAAAAGTATCTTTAAATA : ATTTAAAAAAAAAAAAAAG</gDNA_template>
            <first_frame> Q  S  *  H  V  R  T  G  D  D  E  R  C  T  S  P  R  *  T  P  A  N  S  D  R  R  R  R  *  *  R  R  R  R  C  C  R  W  R  W  Q  W  W  G  R  N  R  V  Y  G  Q  P  Y  S  S  H  S  L  R  P  T  S  S  L  S  F  S  R  A  S  Q  R  R  R  R  R  F  Y  G  D  E  W  C  G  R  C  F  S  *  R  L  V  W  S  S  F  R  N  C  S  Y  C  W  *  W  S  F  R  S  A  Y  A  V  V  S  R  R  S  V  R  F  *  C  R  F  T  *  K   : G  S  G  G  A  V  T  V  G  G  I  R  S  P  S  W  Y  P  C  C  K  C  G  S  P  K  S  E   : G  F  R  *  L  S  W  K  I  K  S  T  G  K  S  C  F  F  K  S  F  *  G  K  E  E  R  T  V  F  *  *  K  D  P  L  Y  C  A  E  G  S  C  D  E  :  D  A  A  Q  E  R  S  V  Y  I  C  Q  V  N  T  *  R  S  R  F  F  C  R  L  E  *  R  L  W  S  R  R  A  G  N  I  :  M  *  T  L  Q  Y  *  F  E  I  H  S  Y  D  A  S  G  T  S  W  P  K  V  S  L  *  C  M  W  T  Q  V  G  Q  *   : G  N  F  K  R  S  F  *  S  S  S  S  W  N  S  G  P  N  C  E  T  W  *  T   : E  P  W  *  T  *  W  L  G  *  H  G  C  Y  H  H  S  G  *  Q  Q  P  S  G  V  T  A  *  T  V  R  E  N  P  S  L  Q  L  L  W  W  Q  L  M  L  K  *  D  E  *  L  K  F  I  C  C  T  I  R  Q  N  *  I  V  N  S  K  I  L  Y  S  *  A  S  D  I  V  S  R  S  F  S  V  L  F  W  C  S  N  V  *  L  K  S  E  T  C  P  T  N  R  Y  M  Q  A  *  K  Y  L  *  I  :  I  *  K  K  K  K  </first_frame>
            <second_frame>  R  A  N  M  Y  G  R  E  T  M  N  A  A  L  H  Q  D  R  H  Q  Q  T  Q  I  D  D  D  D  D  D  D  V  V  A  A  V  G  G  G  G  S  G  G  G  G  I  E  S  M  D  N  P  T  P  H  I  R  Y  D  Q  H  H  H  S  H  S  H  A  L  H  N  G  G  A  G  G  S  M  E  M  N  G  V  E  G  V  S  H  N  A  L  Y  G  P  P  S  E  I  V  P  T  A  G  S  G  A  S  D  Q  L  T  L  S  F  Q  G  E  V  Y  V  F  D  A  V  S  P  E  K  :  V  Q  A  V  L  L  L  L  G  G  Y  E  V  P  P  G  I  P  A  V  N  V  V  P  Q  S  Q  R  :  A  S  G  D  F  P  G  R  L  N  Q  P  E  R  A  A  S  L  N  R  F  R  E  K  R  K  E  R  C  F  D  K  K  I  R  Y  T  V  R  K  E  V  A  M  R :   M  Q  R  K  K  G  Q  F  T  S  A  K  S  I  P  D  E  V  G  S  S  A  D  W  N  E  G  S  G  Q  E  E  Q  E  T  S :   C  R  H  C  N  I  S  S  K  S  T  P  M  M  R  R  G  P  A  G  P  R  S  L  C  N  A  C  G  L  K  W  A  N  K  :  G  I  L  R  D  L  S  K  V  P  A  P  G  T  Q  D  Q  T  A  K  P  G  E  Q  :  S  H  G  E  P  N  G  S  D  D  M  A  A  I  I  T  P  D  D  N  N  P  V  G  *  P  L  E  L  *  G  R  I  L  L  C  N  Y  C  G  G  S  *  C  *  S  E  M  N  N  *  N  S  S  V  V  L  S  A  K  I  R  L  *  I  V  K  Y  C  T  L  R  H  P  T  L  F  L  G  V  L  V  F  Y  S  G  V  Q  M  Y  N  *  N  L  K  L  V  P  R  I  D  T  C  R  L  K  S  I  F  K  * :   F  K  K  K  K  K </second_frame>
            <third_frame>   E  L  T  C  T  D  G  R  R  *  T  L  H  F  T  K  I  D  T  S  K  L  R  S  T  T  T  M  M  T  T  S  S  L  L  S  V  A  V  A  V  V  G  E  E  *  S  L  W  T  T  L  L  L  T  F  A  T  T  N  I  I  T  L  I  L  T  R  F  T  T  A  A  P  A  V  L  W  R  *  M  V  W  K  V  F  L  I  T  P  C  M  V  L  L  P  K  L  F  L  L  L  V  V  E  L  P  I  S  L  R  C  R  F  K  A  K  C  T  F  L  M  P  F  H  L  K  R :   F  R  R  C  C  Y  C  W  G  D  T  K  S  L  L  V  S  L  L  *  M  W  F  P  K  V  R  G :   L  Q  V  T  F  L  E  D  *  I  N  R  K  E  L  L  L  *  I  V  L  G  K  R  G  K  N  G  V  L  I  K  R  S  A  I  L  C  G  R  K  L  R  *   : G  C  S  A  R  K  V  S  L  H  L  P  S  Q  Y  L  T  K  *  V  L  L  Q  I  G  M  K  A  L  V  K  K  S  R  K  H   : H  V  D  I  A  I  L  V  R  N  P  L  L  *  C  V  G  D  Q  L  A  Q  G  L  F  V  M  H  V  D  S  S  G  P  I  R :   E  F  *  E  I  F  L  K  F  Q  L  L  E  L  R  T  K  L  R  N  L  V  N  R :   A  M  V  N  L  M  A  R  M  T  W  L  L  S  S  L  R  M  T  T  T  Q  W  G  D  R  L  N  C  E  G  E  S  F  S  A  I  I  V  V  A  V  D  V  E  V  R  *  I  I  E  I  H  L  L  Y  Y  P  P  K  L  D  C  K  *  *  N  I  V  L  L  G  I  R  H  C  F  S  E  F  *  C  F  I  L  V  F  K  C  I  I  E  I  *  N  L  S  H  E  S  I  H  A  G  L  K  V  S  L  N   : N  L  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55341" stop="55724"/>
                    <exon start="56669" stop="56752"/>
                    <exon start="56839" stop="56972"/>
                    <exon start="58891" stop="58998"/>
                    <exon start="59360" stop="59465"/>
                    <exon start="61408" stop="61479"/>
                    <exon start="61607" stop="61681"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RANMYGRETMNAALHQDRHQQTQIDDDDDDDVVAAVGGGGSGGGGIESMDNPTPHIRYDQHHHSHSHALHNGGAGGSMEMNGVEGVSHNALYGPPSEIVPTAGSGASDQLTLSFQGEVYVFDAVSPEKVQAVLLLLGGYEVPPGIPAVNVVPQSQRASGDFPGRLNQPERAASLNRFREKRKERCFDKKIRYTVRKEVAMRMQRKKGQFTSAKSIPDEVGSSADWNEGSGQEEQETSCRHCNISSKSTPMMRRGPAGPRSLCNACGLKWANKGILRDLSKVPAPGTQDQTAKPGEQSHGEPNGSDDMAAIITPDDNNPVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="62794" PGL_stop="61669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62794" e_stop="62779"/>
            <exon e_start="62034" e_stop="61669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.875"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.875">
            <gDNA_exon_boundary e_start="62794" e_stop="62779" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62778" i_stop="62035" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="62034" e_stop="61669" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62794" stop="62779"/>
              <exon start="62034" stop="61669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTTTTTTTAA : ATAAAAGTAAAATTTACGTATATTTTTATAAAATAGAGATAAGAATGCAAAGACAGTATGCTCTTCCACCTTTGTAGTCATATAGCAAACAAAAACTATTTAAAGATACTTTTAAGCCTGCATGTATCGATTCGTGGGACAAGTTTCAGATTTCAATTATACATTTGAACACCAGAATAAAACACTAAAACTCCGAGAAACAATGTCGGATGCCTAAGAGTACAATATTTTACTATTTACAATCTAATTTTGGCGGATAGTACAACAGATGAATTTCAATTATTCATCTCACTTCAACATCAACTGCCACCACAATAATTGCAGAGAAGGATTCTCCCTCACAGTTCAAGCGGTCACCCCACTGGG</gDNA_template>
            <first_frame> F  F  F  F  L   : N  K  S  K  I  Y  V  Y  F  Y  K  I  E  I  R  M  Q  R  Q  Y  A  L  P  P  L  *  S  Y  S  K  Q  K  L  F  K  D  T  F  K  P  A  C  I  D  S  W  D  K  F  Q  I  S  I  I  H  L  N  T  R  I  K  H  *  N  S  E  K  Q  C  R  M  P  K  S  T  I  F  Y  Y  L  Q  S  N  F  G  G  *  Y  N  R  *  I  S  I  I  H  L  T  S  T  S  T  A  T  T  I  I  A  E  K  D  S  P  S  Q  F  K  R  S  P  H  W  </first_frame>
            <second_frame>  F  F  F  F  *  :  I  K  V  K  F  T  Y  I  F  I  K  *  R  *  E  C  K  D  S  M  L  F  H  L  C  S  H  I  A  N  K  N  Y  L  K  I  L  L  S  L  H  V  S  I  R  G  T  S  F  R  F  Q  L  Y  I  *  T  P  E  *  N  T  K  T  P  R  N  N  V  G  C  L  R  V  Q  Y  F  T  I  Y  N  L  I  L  A  D  S  T  T  D  E  F  Q  L  F  I  S  L  Q  H  Q  L  P  P  Q  *  L  Q  R  R  I  L  P  H  S  S  S  G  H  P  T  G </second_frame>
            <third_frame>   F  F  F  F  K :   *  K  *  N  L  R  I  F  L  *  N  R  D  K  N  A  K  T  V  C  S  S  T  F  V  V  I  *  Q  T  K  T  I  *  R  Y  F  *  A  C  M  Y  R  F  V  G  Q  V  S  D  F  N  Y  T  F  E  H  Q  N  K  T  L  K  L  R  E  T  M  S  D  A  *  E  Y  N  I  L  L  F  T  I  *  F  W  R  I  V  Q  Q  M  N  F  N  Y  S  S  H  F  N  I  N  C  H  H  N  N  C  R  E  G  F  S  L  T  V  Q  A  V  T  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0245N21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62046" e_stop="61697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="62046" e_stop="61697" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62046" stop="61697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236297" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATGCCGCAAGATAAAAGTAAAATTTACGTATATTTTTATAAAATAGAGATAAGAATGCAAAGACAGTATGCTCTTCCACCTTTGTAGTCATATAGCAAACAAAAACTATTTAAAGATACTTTTAAGCCTGCATGTATCGATTCGTGGGACAAGTTTCAGATTTCAATTATACATTTGAACACCAGAATAAAACACTAAAACTCCGAGAAACAATGTCGGATGCCTAAGAGTACAATATTTTACTATTTACAATCTAATTTTGGCGGATAGTACAACAGATGAATTTCAATTATTCATCTCACTTCAACATCAACTGCCACCACAATAATTGCAGAGAAGGATTCTCCC</gDNA_template>
            <first_frame> I  C  R  K  I  K  V  K  F  T  Y  I  F  I  K  *  R  *  E  C  K  D  S  M  L  F  H  L  C  S  H  I  A  N  K  N  Y  L  K  I  L  L  S  L  H  V  S  I  R  G  T  S  F  R  F  Q  L  Y  I  *  T  P  E  *  N  T  K  T  P  R  N  N  V  G  C  L  R  V  Q  Y  F  T  I  Y  N  L  I  L  A  D  S  T  T  D  E  F  Q  L  F  I  S  L  Q  H  Q  L  P  P  Q  *  L  Q  R  R  I  L   </first_frame>
            <second_frame>  Y  A  A  R  *  K  *  N  L  R  I  F  L  *  N  R  D  K  N  A  K  T  V  C  S  S  T  F  V  V  I  *  Q  T  K  T  I  *  R  Y  F  *  A  C  M  Y  R  F  V  G  Q  V  S  D  F  N  Y  T  F  E  H  Q  N  K  T  L  K  L  R  E  T  M  S  D  A  *  E  Y  N  I  L  L  F  T  I  *  F  W  R  I  V  Q  Q  M  N  F  N  Y  S  S  H  F  N  I  N  C  H  H  N  N  C  R  E  G  F  S  </second_frame>
            <third_frame>   M  P  Q  D  K  S  K  I  Y  V  Y  F  Y  K  I  E  I  R  M  Q  R  Q  Y  A  L  P  P  L  *  S  Y  S  K  Q  K  L  F  K  D  T  F  K  P  A  C  I  D  S  W  D  K  F  Q  I  S  I  I  H  L  N  T  R  I  K  H  *  N  S  E  K  Q  C  R  M  P  K  S  T  I  F  Y  Y  L  Q  S  N  F  G  G  *  Y  N  R  *  I  S  I  I  H  L  T  S  T  S  T  A  T  T  I  I  A  E  K  D  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0245N21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="73389" PGL_stop="69181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72945" e_stop="72930"/>
            <exon e_start="72742" e_stop="72656"/>
            <exon e_start="72554" e_stop="72441"/>
            <exon e_start="72306" e_stop="72211"/>
            <exon e_start="72074" e_stop="72032"/>
            <exon e_start="71678" e_stop="71530"/>
            <exon e_start="71433" e_stop="71287"/>
            <exon e_start="70524" e_stop="70472"/>
            <exon e_start="70258" e_stop="70159"/>
            <exon e_start="69822" e_stop="69181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.712" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.662" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72945" e_stop="72930" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.950">
            <gDNA_intron_boundary i_start="72929" i_stop="72743" i_length="187"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72742" e_stop="72656" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72655" i_stop="72555" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72554" e_stop="72441" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.712" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72440" i_stop="72307" i_length="134"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72306" e_stop="72211" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.920" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72210" i_stop="72075" i_length="136"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72074" e_stop="72032" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.662">
            <gDNA_intron_boundary i_start="72031" i_stop="71679" i_length="353"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71678" e_stop="71530" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.751">
            <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71433" e_stop="71287" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.926" acc_prob="0.981">
            <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70472" e_length="53"/>
          </exon>
          <intron i_serial="8" don_prob="0.792" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="70258" e_stop="70159" e_length="100"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.944">
            <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="69822" e_stop="69181" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72945" stop="72930"/>
              <exon start="72742" stop="72656"/>
              <exon start="72554" stop="72441"/>
              <exon start="72306" stop="72211"/>
              <exon start="72074" stop="72032"/>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72944" stop="72930"/>
              <exon start="72742" stop="72656"/>
              <exon start="72554" stop="72441"/>
              <exon start="72306" stop="72211"/>
              <exon start="72074" stop="72032"/>
              <exon start="71678" stop="71534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71593" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71388" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71361" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70489" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTATTGAGATGGAG : TTGTAATTAACTAATGGTATCAGGGTCTATGCTCAGCTGACATCTCAGATAAAAACTAGCTCATTTGATAGATGCCAAGATCTTGAT : ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAA : GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAG : GTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAG : GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG : CCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG : GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG : AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG : ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATTTTTTGTCATGGGCAATGTTTTGCTGAGCTGATCGCTATTGGCTTTTACCCACTTACTGTCTATTTCTATGTCAACTATAAATTCATTGTTCGTAGAAGCTGTACGAAATAAGAGGGGACTTTTCGTCTTTATAGGAAGAGGCTAGTTTTGTTGCCTTTCGTTATGATAGTTGGCAATTTATTTTCTAGCCGCCAATTTTTGAGTTCGATACTTCATTTGCTTTCTCAATTTTGTCAAATGTGATAGTAGGAAATATCATCACTTGTGT</gDNA_template>
            <first_frame> P  Y  *  D  G   : V  V  I  N  *  W  Y  Q  G  L  C  S  A  D  I  S  D  K  N  *  L  I  *  *  M  P  R  S  *   : Y  G  L  H  K  Y  F  T  S  K  F  Y  W  W  D  *  S  S  *  D  G  I  T  A  G  Q  V  L  *  D  C  C  T  E  S  E  A  E   : R  W  R  R  F  R  K  S  T  N  L  *  K  K  S  K  I  T  C  Y  T  C  Q  I  S  W  W  F  C  P  *  S   : G  C  S  A  C  S  R  S  *  E  N  Y  S  I  R :   I  K  C  W  F  K  L  G  N  I  I  N  I  W  W  L  G  Q  S  C  I  C  K  R  Q  F  H  *  Q  A  I  Q  *  Y  C  T  E  H  G  S  C  F  L  N  D  P  L  E  R   : A  P  K  C  L  E  A  F  R  N  S  F  R  S  G  N  Y  *  N  C  H  Y  K  T  V  I  A  V  I  L  *  R  C  Q  E  E  Y  *  R  L  G  T  *  S  N  H  A  F  S   : G  K  S  H  Q  K  R  S  S  Q  C  V  H  Q  E  T  L  Q  :  R  K  P  P  R  R  N  V  A  R  T  *  *  D  S  H  E  E  K  A  Y  T  *  D  T  S  C  S  S  A  S  F  Q   : D  I  G  G  V  T  T  *  C  *  D  S  *  K  G  L  *  L  G  Y  *  S  D  R  P  S  K  D  S  R  A  S  I  I  I  N  V  H  Y  K  Q  W  L  N  W  F  T  Y  Q  F  S  K  E  L  *  I  A  Q  C  I  P  F  R  *  A  T  V  T  N  V  W  W  C  R  F  K  R  W  W  A  *  C  W  Y  L  S  N  S  R  C  I  R  D  S  I  D  A  G  F  D  H  S  R  V  I  Y  L  L  S  P  P  S  L  Q  N  P  S  L  V  Q  W  S  A  T  I  F  C  H  G  Q  C  F  A  E  L  I  A  I  G  F  Y  P  L  T  V  Y  F  Y  V  N  Y  K  F  I  V  R  R  S  C  T  K  *  E  G  T  F  R  L  Y  R  K  R  L  V  L  L  P  F  V  M  I  V  G  N  L  F  S  S  R  Q  F  L  S  S  I  L  H  L  L  S  Q  F  C  Q  M  *  *  *  E  I  S  S  L  V  </first_frame>
            <second_frame>  L  I  E  M  E  :  L  *  L  T  N  G  I  R  V  Y  A  Q  L  T  S  Q  I  K  T  S  S  F  D  R  C  Q  D  L  D  :  M  D  Y  I  N  T  S  H  P  N  F  I  G  G  T  K  A  H  E  M  A  L  Q  Q  V  K  S  S  R  I  A  A  P  N  P  R  Q  K  :  D  G  V  D  L  E  K  A  P  T  S  E  R  S  L  K  S  R  A  I  L  A  R  S  V  G  G  F  V  P  D  Q  :  V  V  R  P  A  P  E  V  E  K  T  T  A  S   : G  S  N  V  G  S  S  W  G  I  S  S  I  F  G  G  S  D  N  R  A  S  V  K  D  N  F  I  N  K  P  F  S  D  T  A  L  S  M  D  H  A  F  S  M  I  H  L  R  E  :  P  P  S  V  L  R  P  S  E  T  H  S  D  Q  E  T  I  E  I  A  I  T  K  L  L  L  R  S  Y  Y  D  V  V  R  K  N  I  E  D  S  V  P  K  A  I  M  H  F  L  :  V  N  H  T  K  R  D  L  H  N  V  F  I  K  K  L  Y  R :   E  N  L  L  E  E  M  L  Q  E  P  D  E  I  A  M  K  R  K  R  T  R  E  T  L  R  V  L  Q  Q  A  F  K  :  T  L  E  E  L  P  L  D  A  E  T  V  E  R  G  Y  S  L  G  T  D  L  T  G  L  P  K  I  H  G  L  P  S  S  S  M  Y  T  T  S  S  G  S  T  G  S  H  T  S  S  P  K  S  S  R  L  R  N  A  S  H  S  G  E  L  Q  L  P  M  Y  G  G  V  D  S  N  G  G  G  H  N  A  G  I  Y  P  T  V  G  V  *  E  T  Q  *  M  Q  G  L  I  I  H  E  *  F  I  C  S  L  H  H  H  C  K  T  R  L  W  C  S  G  V  L  L  F  F  V  M  G  N  V  L  L  S  *  S  L  L  A  F  T  H  L  L  S  I  S  M  S  T  I  N  S  L  F  V  E  A  V  R  N  K  R  G  L  F  V  F  I  G  R  G  *  F  C  C  L  S  L  *  *  L  A  I  Y  F  L  A  A  N  F  *  V  R  Y  F  I  C  F  L  N  F  V  K  C  D  S  R  K  Y  H  H  L  C </second_frame>
            <third_frame>   L  L  R  W  S :   C  N  *  L  M  V  S  G  S  M  L  S  *  H  L  R  *  K  L  A  H  L  I  D  A  K  I  L  I :   W  I  T  *  I  L  H  I  Q  I  L  L  V  G  L  K  L  M  R  W  H  Y  S  R  S  S  P  L  G  L  L  H  R  I  R  G  R  K :   M  A  *  I  *  K  K  H  Q  P  L  K  E  V  *  N  H  V  L  Y  L  P  D  Q  L  V  V  L  S  L  I  R :   L  F  G  L  L  Q  K  L  R  K  L  Q  H  Q  :  D  Q  M  L  V  Q  V  G  E  Y  H  Q  Y  L  V  A  R  T  I  V  H  L  *  K  T  I  S  L  T  S  H  S  V  I  L  H  *  A  W  I  M  L  S  Q  *  S  T  *  E  S :   P  Q  V  S  *  G  L  Q  K  L  I  Q  I  R  K  L  L  K  L  P  L  Q  N  C  Y  C  G  H  T  M  T  L  S  G  R  I  L  K  T  R  Y  L  K  Q  S  C  I  F  W :   *  I  T  P  K  E  I  F  T  M  C  S  S  R  N  S  T   : E  K  T  S  S  K  K  C  C  K  N  L  M  R  *  P  *  R  E  S  V  H  V  R  H  F  V  F  F  S  K  L  S  R :   H  W  R  S  Y  H  L  M  L  R  Q  L  K  G  V  I  A  W  V  L  I  *  Q  A  F  Q  R  F  T  G  F  H  H  H  Q  C  T  L  Q  A  V  A  Q  L  V  H  I  P  V  L  Q  R  A  L  D  C  A  M  H  P  I  Q  V  S  Y  S  Y  Q  C  M  V  V  *  I  Q  T  V  V  G  I  M  L  V  F  I  Q  Q  *  V  Y  K  R  L  N  R  C  R  V  *  S  F  T  S  N  L  F  A  L  S  T  I  I  A  K  P  V  S  G  A  V  E  C  Y  Y  F  L  S  W  A  M  F  C  *  A  D  R  Y  W  L  L  P  T  Y  C  L  F  L  C  Q  L  *  I  H  C  S  *  K  L  Y  E  I  R  G  D  F  S  S  L  *  E  E  A  S  F  V  A  F  R  Y  D  S  W  Q  F  I  F  *  P  P  I  F  E  F  D  T  S  F  A  F  S  I  L  S  N  V  I  V  G  N  I  I  T  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72736" stop="72656"/>
                    <exon start="72554" stop="72441"/>
                    <exon start="72306" stop="72211"/>
                    <exon start="72074" stop="72032"/>
                    <exon start="71678" stop="71530"/>
                    <exon start="71433" stop="71287"/>
                    <exon start="70524" stop="70472"/>
                    <exon start="70258" stop="70159"/>
                    <exon start="69822" stop="69550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTNGIRVYAQLTSQIKTSSFDRCQDLDMDYINTSHPNFIGGTKAHEMALQQVKSSRIAAPNPRQKDGVDLEKAPTSERSLKSRAILARSVGGFVPDQVVRPAPEVEKTTASGSNVGSSWGISSIFGGSDNRASVKDNFINKPFSDTALSMDHAFSMIHLREPPSVLRPSETHSDQETIEIAITKLLLRSYYDVVRKNIEDSVPKAIMHFLVNHTKRDLHNVFIKKLYRENLLEEMLQEPDEIAMKRKRTRETLRVLQQAFKTLEELPLDAETVERGYSLGTDLTGLPKIHGLPSSSMYTTSSGSTGSHTSSPKSSRLRNASHSGELQLPMYGGVDSNGGGHNAGIYPTVGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69580" stop="69338"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CWYLSNSRCIRDSIDAGFDHSRVIYLLSPPSLQNPSLVQWSATIFCHGQCFAELIAIGFYPLTVYFYVNYKFIVRRSCTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73389" e_stop="73365"/>
            <exon e_start="73240" e_stop="73148"/>
            <exon e_start="73067" e_stop="72930"/>
            <exon e_start="72554" e_stop="72423"/>
            <exon e_start="72306" e_stop="72211"/>
            <exon e_start="72074" e_stop="72032"/>
            <exon e_start="71678" e_stop="71530"/>
            <exon e_start="71433" e_stop="71287"/>
            <exon e_start="70524" e_stop="70472"/>
            <exon e_start="70258" e_stop="70159"/>
            <exon e_start="69822" e_stop="69181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.161" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.586" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.662" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73389" e_stop="73365" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73364" i_stop="73241" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73240" e_stop="73148" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.161" acc_prob="0.961">
            <gDNA_intron_boundary i_start="73147" i_stop="73068" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73067" e_stop="72930" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72929" i_stop="72555" i_length="375"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72554" e_stop="72423" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.586" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72422" i_stop="72307" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72306" e_stop="72211" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.920" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72210" i_stop="72075" i_length="136"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72074" e_stop="72032" e_length="43"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.662">
            <gDNA_intron_boundary i_start="72031" i_stop="71679" i_length="353"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71678" e_stop="71530" e_length="149"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.751">
            <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="71433" e_stop="71287" e_length="147"/>
          </exon>
          <intron i_serial="8" don_prob="0.926" acc_prob="0.981">
            <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70472" e_length="53"/>
          </exon>
          <intron i_serial="9" don_prob="0.792" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="70258" e_stop="70159" e_length="100"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.944">
            <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="69822" e_stop="69181" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73389" stop="73365"/>
              <exon start="73240" stop="73148"/>
              <exon start="73067" stop="72930"/>
              <exon start="72554" stop="72423"/>
              <exon start="72306" stop="72211"/>
              <exon start="72074" stop="72032"/>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73389" stop="73365"/>
              <exon start="73240" stop="73148"/>
              <exon start="73067" stop="72930"/>
              <exon start="72554" stop="72423"/>
              <exon start="72306" stop="72244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71593" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71388" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71361" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70489" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATCTGCATTATTTGTGCCAGAG : GTCCCTTTTGAAGTTCTCATCCGAAGGCAAATAGCACGATTAATGGACCCGAGTTTTCAATGTGCACGATTTATATATGATGAGCTGGTTAAA : ATGAGCCATCGTTGTATGGTCAATGAGTTGCAACGTTTTCCAATTTTGAGAAAGCGCATGGATGAGGTTATTGGAAATTTTTTGCGTGAAGGACTGGGACCTTCAGAAGTAATGATTGGACACCTTATTGAGATGGAG : ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCT : GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAG : GTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAG : GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG : CCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG : GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG : AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG : ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATTTTTTGTCATGGGCAATGTTTTGCTGAGCTGATCGCTATTGGCTTTTACCCACTTACTGTCTATTTCTATGTCAACTATAAATTCATTGTTCGTAGAAGCTGTACGAAATAAGAGGGGACTTTTCGTCTTTATAGGAAGAGGCTAGTTTTGTTGCCTTTCGTTATGATAGTTGGCAATTTATTTTCTAGCCGCCAATTTTTGAGTTCGATACTTCATTTGCTTTCTCAATTTTGTCAAATGTGATAGTAGGAAATATCATCACTTGTGT</gDNA_template>
            <first_frame> Q  I  C  I  I  C  A  R   : G  P  F  *  S  S  H  P  K  A  N  S  T  I  N  G  P  E  F  S  M  C  T  I  Y  I  *  *  A  G  *   : N  E  P  S  L  Y  G  Q  *  V  A  T  F  S  N  F  E  K  A  H  G  *  G  Y  W  K  F  F  A  *  R  T  G  T  F  R  S  N  D  W  T  P  Y  *  D  G   : D  G  L  H  K  Y  F  T  S  K  F  Y  W  W  D  *  S  S  *  D  G  I  T  A  G  Q  V  L  *  D  C  C  T  E  S  E  A  E  S  K  I  F  I  C   : *  W  R  R  F  R  K  S  T  N  L  *  K  K  S  K  I  T  C  Y  T  C  Q  I  S  W  W  F  C  P  *  S   : G  C  S  A  C  S  R  S  *  E  N  Y  S  I  R :   I  K  C  W  F  K  L  G  N  I  I  N  I  W  W  L  G  Q  S  C  I  C  K  R  Q  F  H  *  Q  A  I  Q  *  Y  C  T  E  H  G  S  C  F  L  N  D  P  L  E  R   : A  P  K  C  L  E  A  F  R  N  S  F  R  S  G  N  Y  *  N  C  H  Y  K  T  V  I  A  V  I  L  *  R  C  Q  E  E  Y  *  R  L  G  T  *  S  N  H  A  F  S   : G  K  S  H  Q  K  R  S  S  Q  C  V  H  Q  E  T  L  Q  :  R  K  P  P  R  R  N  V  A  R  T  *  *  D  S  H  E  E  K  A  Y  T  *  D  T  S  C  S  S  A  S  F  Q   : D  I  G  G  V  T  T  *  C  *  D  S  *  K  G  L  *  L  G  Y  *  S  D  R  P  S  K  D  S  R  A  S  I  I  I  N  V  H  Y  K  Q  W  L  N  W  F  T  Y  Q  F  S  K  E  L  *  I  A  Q  C  I  P  F  R  *  A  T  V  T  N  V  W  W  C  R  F  K  R  W  W  A  *  C  W  Y  L  S  N  S  R  C  I  R  D  S  I  D  A  G  F  D  H  S  R  V  I  Y  L  L  S  P  P  S  L  Q  N  P  S  L  V  Q  W  S  A  T  I  F  C  H  G  Q  C  F  A  E  L  I  A  I  G  F  Y  P  L  T  V  Y  F  Y  V  N  Y  K  F  I  V  R  R  S  C  T  K  *  E  G  T  F  R  L  Y  R  K  R  L  V  L  L  P  F  V  M  I  V  G  N  L  F  S  S  R  Q  F  L  S  S  I  L  H  L  L  S  Q  F  C  Q  M  *  *  *  E  I  S  S  L  V  </first_frame>
            <second_frame>  K  S  A  L  F  V  P  E  :  V  P  F  E  V  L  I  R  R  Q  I  A  R  L  M  D  P  S  F  Q  C  A  R  F  I  Y  D  E  L  V  K  :  M  S  H  R  C  M  V  N  E  L  Q  R  F  P  I  L  R  K  R  M  D  E  V  I  G  N  F  L  R  E  G  L  G  P  S  E  V  M  I  G  H  L  I  E  M  E  :  M  D  Y  I  N  T  S  H  P  N  F  I  G  G  T  K  A  H  E  M  A  L  Q  Q  V  K  S  S  R  I  A  A  P  N  P  R  Q  K  V  K  F  S  F  A  :  D  G  V  D  L  E  K  A  P  T  S  E  R  S  L  K  S  R  A  I  L  A  R  S  V  G  G  F  V  P  D  Q  :  V  V  R  P  A  P  E  V  E  K  T  T  A  S   : G  S  N  V  G  S  S  W  G  I  S  S  I  F  G  G  S  D  N  R  A  S  V  K  D  N  F  I  N  K  P  F  S  D  T  A  L  S  M  D  H  A  F  S  M  I  H  L  R  E  :  P  P  S  V  L  R  P  S  E  T  H  S  D  Q  E  T  I  E  I  A  I  T  K  L  L  L  R  S  Y  Y  D  V  V  R  K  N  I  E  D  S  V  P  K  A  I  M  H  F  L  :  V  N  H  T  K  R  D  L  H  N  V  F  I  K  K  L  Y  R :   E  N  L  L  E  E  M  L  Q  E  P  D  E  I  A  M  K  R  K  R  T  R  E  T  L  R  V  L  Q  Q  A  F  K  :  T  L  E  E  L  P  L  D  A  E  T  V  E  R  G  Y  S  L  G  T  D  L  T  G  L  P  K  I  H  G  L  P  S  S  S  M  Y  T  T  S  S  G  S  T  G  S  H  T  S  S  P  K  S  S  R  L  R  N  A  S  H  S  G  E  L  Q  L  P  M  Y  G  G  V  D  S  N  G  G  G  H  N  A  G  I  Y  P  T  V  G  V  *  E  T  Q  *  M  Q  G  L  I  I  H  E  *  F  I  C  S  L  H  H  H  C  K  T  R  L  W  C  S  G  V  L  L  F  F  V  M  G  N  V  L  L  S  *  S  L  L  A  F  T  H  L  L  S  I  S  M  S  T  I  N  S  L  F  V  E  A  V  R  N  K  R  G  L  F  V  F  I  G  R  G  *  F  C  C  L  S  L  *  *  L  A  I  Y  F  L  A  A  N  F  *  V  R  Y  F  I  C  F  L  N  F  V  K  C  D  S  R  K  Y  H  H  L  C </second_frame>
            <third_frame>   N  L  H  Y  L  C  Q  R :   S  L  L  K  F  S  S  E  G  K  *  H  D  *  W  T  R  V  F  N  V  H  D  L  Y  M  M  S  W  L  K :   *  A  I  V  V  W  S  M  S  C  N  V  F  Q  F  *  E  S  A  W  M  R  L  L  E  I  F  C  V  K  D  W  D  L  Q  K  *  *  L  D  T  L  L  R  W  R :   W  I  T  *  I  L  H  I  Q  I  L  L  V  G  L  K  L  M  R  W  H  Y  S  R  S  S  P  L  G  L  L  H  R  I  R  G  R  K  *  N  F  H  L  L :   M  A  *  I  *  K  K  H  Q  P  L  K  E  V  *  N  H  V  L  Y  L  P  D  Q  L  V  V  L  S  L  I  R :   L  F  G  L  L  Q  K  L  R  K  L  Q  H  Q  :  D  Q  M  L  V  Q  V  G  E  Y  H  Q  Y  L  V  A  R  T  I  V  H  L  *  K  T  I  S  L  T  S  H  S  V  I  L  H  *  A  W  I  M  L  S  Q  *  S  T  *  E  S :   P  Q  V  S  *  G  L  Q  K  L  I  Q  I  R  K  L  L  K  L  P  L  Q  N  C  Y  C  G  H  T  M  T  L  S  G  R  I  L  K  T  R  Y  L  K  Q  S  C  I  F  W :   *  I  T  P  K  E  I  F  T  M  C  S  S  R  N  S  T   : E  K  T  S  S  K  K  C  C  K  N  L  M  R  *  P  *  R  E  S  V  H  V  R  H  F  V  F  F  S  K  L  S  R :   H  W  R  S  Y  H  L  M  L  R  Q  L  K  G  V  I  A  W  V  L  I  *  Q  A  F  Q  R  F  T  G  F  H  H  H  Q  C  T  L  Q  A  V  A  Q  L  V  H  I  P  V  L  Q  R  A  L  D  C  A  M  H  P  I  Q  V  S  Y  S  Y  Q  C  M  V  V  *  I  Q  T  V  V  G  I  M  L  V  F  I  Q  Q  *  V  Y  K  R  L  N  R  C  R  V  *  S  F  T  S  N  L  F  A  L  S  T  I  I  A  K  P  V  S  G  A  V  E  C  Y  Y  F  L  S  W  A  M  F  C  *  A  D  R  Y  W  L  L  P  T  Y  C  L  F  L  C  Q  L  *  I  H  C  S  *  K  L  Y  E  I  R  G  D  F  S  S  L  *  E  E  A  S  F  V  A  F  R  Y  D  S  W  Q  F  I  F  *  P  P  I  F  E  F  D  T  S  F  A  F  S  I  L  S  N  V  I  V  G  N  I  I  T  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73388" stop="73365"/>
                    <exon start="73240" stop="73148"/>
                    <exon start="73067" stop="72930"/>
                    <exon start="72554" stop="72423"/>
                    <exon start="72306" stop="72211"/>
                    <exon start="72074" stop="72032"/>
                    <exon start="71678" stop="71530"/>
                    <exon start="71433" stop="71287"/>
                    <exon start="70524" stop="70472"/>
                    <exon start="70258" stop="70159"/>
                    <exon start="69822" stop="69550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSALFVPEVPFEVLIRRQIARLMDPSFQCARFIYDELVKMSHRCMVNELQRFPILRKRMDEVIGNFLREGLGPSEVMIGHLIEMEMDYINTSHPNFIGGTKAHEMALQQVKSSRIAAPNPRQKVKFSFADGVDLEKAPTSERSLKSRAILARSVGGFVPDQVVRPAPEVEKTTASGSNVGSSWGISSIFGGSDNRASVKDNFINKPFSDTALSMDHAFSMIHLREPPSVLRPSETHSDQETIEIAITKLLLRSYYDVVRKNIEDSVPKAIMHFLVNHTKRDLHNVFIKKLYRENLLEEMLQEPDEIAMKRKRTRETLRVLQQAFKTLEELPLDAETVERGYSLGTDLTGLPKIHGLPSSSMYTTSSGSTGSHTSSPKSSRLRNASHSGELQLPMYGGVDSNGGGHNAGIYPTVGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69580" stop="69338"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CWYLSNSRCIRDSIDAGFDHSRVIYLLSPPSLQNPSLVQWSATIFCHGQCFAELIAIGFYPLTVYFYVNYKFIVRRSCTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71683" e_stop="71530"/>
            <exon e_start="71433" e_stop="71287"/>
            <exon e_start="70524" e_stop="70472"/>
            <exon e_start="70258" e_stop="70159"/>
            <exon e_start="69822" e_stop="69181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71683" e_stop="71530" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.751">
            <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71433" e_stop="71287" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.981">
            <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70472" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.792" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70258" e_stop="70159" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.944">
            <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69822" e_stop="69181" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71683" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71593" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71388" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71361" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70489" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAGGATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG : CCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG : GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG : AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG : ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATTTTTTGTCATGGGCAATGTTTTGCTGAGCTGATCGCTATTGGCTTTTACCCACTTACTGTCTATTTCTATGTCAACTATAAATTCATTGTTCGTAGAAGCTGTACGAAATAAGAGGGGACTTTTCGTCTTTATAGGAAGAGGCTAGTTTTGTTGCCTTTCGTTATGATAGTTGGCAATTTATTTTCTAGCCGCCAATTTTTGAGTTCGATACTTCATTTGCTTTCTCAATTTTGTCAAATGTGATAGTAGGAAATATCATCACTTGTGT</gDNA_template>
            <first_frame> I  R  I  K  C  W  F  K  L  G  N  I  I  N  I  W  W  L  G  Q  S  C  I  C  K  R  Q  F  H  *  Q  A  I  Q  *  Y  C  T  E  H  G  S  C  F  L  N  D  P  L  E  R   : A  P  K  C  L  E  A  F  R  N  S  F  R  S  G  N  Y  *  N  C  H  Y  K  T  V  I  A  V  I  L  *  R  C  Q  E  E  Y  *  R  L  G  T  *  S  N  H  A  F  S   : G  K  S  H  Q  K  R  S  S  Q  C  V  H  Q  E  T  L  Q  :  R  K  P  P  R  R  N  V  A  R  T  *  *  D  S  H  E  E  K  A  Y  T  *  D  T  S  C  S  S  A  S  F  Q   : D  I  G  G  V  T  T  *  C  *  D  S  *  K  G  L  *  L  G  Y  *  S  D  R  P  S  K  D  S  R  A  S  I  I  I  N  V  H  Y  K  Q  W  L  N  W  F  T  Y  Q  F  S  K  E  L  *  I  A  Q  C  I  P  F  R  *  A  T  V  T  N  V  W  W  C  R  F  K  R  W  W  A  *  C  W  Y  L  S  N  S  R  C  I  R  D  S  I  D  A  G  F  D  H  S  R  V  I  Y  L  L  S  P  P  S  L  Q  N  P  S  L  V  Q  W  S  A  T  I  F  C  H  G  Q  C  F  A  E  L  I  A  I  G  F  Y  P  L  T  V  Y  F  Y  V  N  Y  K  F  I  V  R  R  S  C  T  K  *  E  G  T  F  R  L  Y  R  K  R  L  V  L  L  P  F  V  M  I  V  G  N  L  F  S  S  R  Q  F  L  S  S  I  L  H  L  L  S  Q  F  C  Q  M  *  *  *  E  I  S  S  L  V  </first_frame>
            <second_frame>  L  G  S  N  V  G  S  S  W  G  I  S  S  I  F  G  G  S  D  N  R  A  S  V  K  D  N  F  I  N  K  P  F  S  D  T  A  L  S  M  D  H  A  F  S  M  I  H  L  R  E  :  P  P  S  V  L  R  P  S  E  T  H  S  D  Q  E  T  I  E  I  A  I  T  K  L  L  L  R  S  Y  Y  D  V  V  R  K  N  I  E  D  S  V  P  K  A  I  M  H  F  L  :  V  N  H  T  K  R  D  L  H  N  V  F  I  K  K  L  Y  R :   E  N  L  L  E  E  M  L  Q  E  P  D  E  I  A  M  K  R  K  R  T  R  E  T  L  R  V  L  Q  Q  A  F  K  :  T  L  E  E  L  P  L  D  A  E  T  V  E  R  G  Y  S  L  G  T  D  L  T  G  L  P  K  I  H  G  L  P  S  S  S  M  Y  T  T  S  S  G  S  T  G  S  H  T  S  S  P  K  S  S  R  L  R  N  A  S  H  S  G  E  L  Q  L  P  M  Y  G  G  V  D  S  N  G  G  G  H  N  A  G  I  Y  P  T  V  G  V  *  E  T  Q  *  M  Q  G  L  I  I  H  E  *  F  I  C  S  L  H  H  H  C  K  T  R  L  W  C  S  G  V  L  L  F  F  V  M  G  N  V  L  L  S  *  S  L  L  A  F  T  H  L  L  S  I  S  M  S  T  I  N  S  L  F  V  E  A  V  R  N  K  R  G  L  F  V  F  I  G  R  G  *  F  C  C  L  S  L  *  *  L  A  I  Y  F  L  A  A  N  F  *  V  R  Y  F  I  C  F  L  N  F  V  K  C  D  S  R  K  Y  H  H  L  C </second_frame>
            <third_frame>   *  D  Q  M  L  V  Q  V  G  E  Y  H  Q  Y  L  V  A  R  T  I  V  H  L  *  K  T  I  S  L  T  S  H  S  V  I  L  H  *  A  W  I  M  L  S  Q  *  S  T  *  E  S :   P  Q  V  S  *  G  L  Q  K  L  I  Q  I  R  K  L  L  K  L  P  L  Q  N  C  Y  C  G  H  T  M  T  L  S  G  R  I  L  K  T  R  Y  L  K  Q  S  C  I  F  W :   *  I  T  P  K  E  I  F  T  M  C  S  S  R  N  S  T   : E  K  T  S  S  K  K  C  C  K  N  L  M  R  *  P  *  R  E  S  V  H  V  R  H  F  V  F  F  S  K  L  S  R :   H  W  R  S  Y  H  L  M  L  R  Q  L  K  G  V  I  A  W  V  L  I  *  Q  A  F  Q  R  F  T  G  F  H  H  H  Q  C  T  L  Q  A  V  A  Q  L  V  H  I  P  V  L  Q  R  A  L  D  C  A  M  H  P  I  Q  V  S  Y  S  Y  Q  C  M  V  V  *  I  Q  T  V  V  G  I  M  L  V  F  I  Q  Q  *  V  Y  K  R  L  N  R  C  R  V  *  S  F  T  S  N  L  F  A  L  S  T  I  I  A  K  P  V  S  G  A  V  E  C  Y  Y  F  L  S  W  A  M  F  C  *  A  D  R  Y  W  L  L  P  T  Y  C  L  F  L  C  Q  L  *  I  H  C  S  *  K  L  Y  E  I  R  G  D  F  S  S  L  *  E  E  A  S  F  V  A  F  R  Y  D  S  W  Q  F  I  F  *  P  P  I  F  E  F  D  T  S  F  A  F  S  I  L  S  N  V  I  V  G  N  I  I  T  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71682" stop="71530"/>
                    <exon start="71433" stop="71287"/>
                    <exon start="70524" stop="70472"/>
                    <exon start="70258" stop="70159"/>
                    <exon start="69822" stop="69550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGSNVGSSWGISSIFGGSDNRASVKDNFINKPFSDTALSMDHAFSMIHLREPPSVLRPSETHSDQETIEIAITKLLLRSYYDVVRKNIEDSVPKAIMHFLVNHTKRDLHNVFIKKLYRENLLEEMLQEPDEIAMKRKRTRETLRVLQQAFKTLEELPLDAETVERGYSLGTDLTGLPKIHGLPSSSMYTTSSGSTGSHTSSPKSSRLRNASHSGELQLPMYGGVDSNGGGHNAGIYPTVGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69580" stop="69338"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CWYLSNSRCIRDSIDAGFDHSRVIYLLSPPSLQNPSLVQWSATIFCHGQCFAELIAIGFYPLTVYFYVNYKFIVRRSCTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="72947" e_stop="72930"/>
            <exon e_start="72554" e_stop="72441"/>
            <exon e_start="72306" e_stop="72211"/>
            <exon e_start="72074" e_stop="72032"/>
            <exon e_start="71678" e_stop="71530"/>
            <exon e_start="71433" e_stop="71287"/>
            <exon e_start="70524" e_stop="70472"/>
            <exon e_start="70258" e_stop="70159"/>
            <exon e_start="69822" e_stop="69181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.944"/>
          <exon-intron don_prob="0.712" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.662" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="72947" e_stop="72930" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72929" i_stop="72555" i_length="375"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72554" e_stop="72441" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.712" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72440" i_stop="72307" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72306" e_stop="72211" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.920" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72210" i_stop="72075" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72074" e_stop="72032" e_length="43"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.662">
            <gDNA_intron_boundary i_start="72031" i_stop="71679" i_length="353"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71678" e_stop="71530" e_length="149"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.751">
            <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71433" e_stop="71287" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.926" acc_prob="0.981">
            <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70472" e_length="53"/>
          </exon>
          <intron i_serial="7" don_prob="0.792" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70258" e_stop="70159" e_length="100"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.944">
            <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69822" e_stop="69181" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72947" stop="72930"/>
              <exon start="72554" stop="72441"/>
              <exon start="72306" stop="72211"/>
              <exon start="72074" stop="72032"/>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71593" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71388" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71361" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70489" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCTTATTGAGATGGAG : ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAA : GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAG : GTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAG : GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG : CCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG : GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG : AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG : ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATTTTTTGTCATGGGCAATGTTTTGCTGAGCTGATCGCTATTGGCTTTTACCCACTTACTGTCTATTTCTATGTCAACTATAAATTCATTGTTCGTAGAAGCTGTACGAAATAAGAGGGGACTTTTCGTCTTTATAGGAAGAGGCTAGTTTTGTTGCCTTTCGTTATGATAGTTGGCAATTTATTTTCTAGCCGCCAATTTTTGAGTTCGATACTTCATTTGCTTTCTCAATTTTGTCAAATGTGATAGTAGGAAATATCATCACTTGTGT</gDNA_template>
            <first_frame> H  L  I  E  M  E  :  M  D  Y  I  N  T  S  H  P  N  F  I  G  G  T  K  A  H  E  M  A  L  Q  Q  V  K  S  S  R  I  A  A  P  N  P  R  Q  K  :  D  G  V  D  L  E  K  A  P  T  S  E  R  S  L  K  S  R  A  I  L  A  R  S  V  G  G  F  V  P  D  Q  :  V  V  R  P  A  P  E  V  E  K  T  T  A  S   : G  S  N  V  G  S  S  W  G  I  S  S  I  F  G  G  S  D  N  R  A  S  V  K  D  N  F  I  N  K  P  F  S  D  T  A  L  S  M  D  H  A  F  S  M  I  H  L  R  E  :  P  P  S  V  L  R  P  S  E  T  H  S  D  Q  E  T  I  E  I  A  I  T  K  L  L  L  R  S  Y  Y  D  V  V  R  K  N  I  E  D  S  V  P  K  A  I  M  H  F  L  :  V  N  H  T  K  R  D  L  H  N  V  F  I  K  K  L  Y  R :   E  N  L  L  E  E  M  L  Q  E  P  D  E  I  A  M  K  R  K  R  T  R  E  T  L  R  V  L  Q  Q  A  F  K  :  T  L  E  E  L  P  L  D  A  E  T  V  E  R  G  Y  S  L  G  T  D  L  T  G  L  P  K  I  H  G  L  P  S  S  S  M  Y  T  T  S  S  G  S  T  G  S  H  T  S  S  P  K  S  S  R  L  R  N  A  S  H  S  G  E  L  Q  L  P  M  Y  G  G  V  D  S  N  G  G  G  H  N  A  G  I  Y  P  T  V  G  V  *  E  T  Q  *  M  Q  G  L  I  I  H  E  *  F  I  C  S  L  H  H  H  C  K  T  R  L  W  C  S  G  V  L  L  F  F  V  M  G  N  V  L  L  S  *  S  L  L  A  F  T  H  L  L  S  I  S  M  S  T  I  N  S  L  F  V  E  A  V  R  N  K  R  G  L  F  V  F  I  G  R  G  *  F  C  C  L  S  L  *  *  L  A  I  Y  F  L  A  A  N  F  *  V  R  Y  F  I  C  F  L  N  F  V  K  C  D  S  R  K  Y  H  H  L  C </first_frame>
            <second_frame>  T  L  L  R  W  R :   W  I  T  *  I  L  H  I  Q  I  L  L  V  G  L  K  L  M  R  W  H  Y  S  R  S  S  P  L  G  L  L  H  R  I  R  G  R  K :   M  A  *  I  *  K  K  H  Q  P  L  K  E  V  *  N  H  V  L  Y  L  P  D  Q  L  V  V  L  S  L  I  R :   L  F  G  L  L  Q  K  L  R  K  L  Q  H  Q  :  D  Q  M  L  V  Q  V  G  E  Y  H  Q  Y  L  V  A  R  T  I  V  H  L  *  K  T  I  S  L  T  S  H  S  V  I  L  H  *  A  W  I  M  L  S  Q  *  S  T  *  E  S :   P  Q  V  S  *  G  L  Q  K  L  I  Q  I  R  K  L  L  K  L  P  L  Q  N  C  Y  C  G  H  T  M  T  L  S  G  R  I  L  K  T  R  Y  L  K  Q  S  C  I  F  W :   *  I  T  P  K  E  I  F  T  M  C  S  S  R  N  S  T   : E  K  T  S  S  K  K  C  C  K  N  L  M  R  *  P  *  R  E  S  V  H  V  R  H  F  V  F  F  S  K  L  S  R :   H  W  R  S  Y  H  L  M  L  R  Q  L  K  G  V  I  A  W  V  L  I  *  Q  A  F  Q  R  F  T  G  F  H  H  H  Q  C  T  L  Q  A  V  A  Q  L  V  H  I  P  V  L  Q  R  A  L  D  C  A  M  H  P  I  Q  V  S  Y  S  Y  Q  C  M  V  V  *  I  Q  T  V  V  G  I  M  L  V  F  I  Q  Q  *  V  Y  K  R  L  N  R  C  R  V  *  S  F  T  S  N  L  F  A  L  S  T  I  I  A  K  P  V  S  G  A  V  E  C  Y  Y  F  L  S  W  A  M  F  C  *  A  D  R  Y  W  L  L  P  T  Y  C  L  F  L  C  Q  L  *  I  H  C  S  *  K  L  Y  E  I  R  G  D  F  S  S  L  *  E  E  A  S  F  V  A  F  R  Y  D  S  W  Q  F  I  F  *  P  P  I  F  E  F  D  T  S  F  A  F  S  I  L  S  N  V  I  V  G  N  I  I  T  C   </second_frame>
            <third_frame>   P  Y  *  D  G   : D  G  L  H  K  Y  F  T  S  K  F  Y  W  W  D  *  S  S  *  D  G  I  T  A  G  Q  V  L  *  D  C  C  T  E  S  E  A  E   : R  W  R  R  F  R  K  S  T  N  L  *  K  K  S  K  I  T  C  Y  T  C  Q  I  S  W  W  F  C  P  *  S   : G  C  S  A  C  S  R  S  *  E  N  Y  S  I  R :   I  K  C  W  F  K  L  G  N  I  I  N  I  W  W  L  G  Q  S  C  I  C  K  R  Q  F  H  *  Q  A  I  Q  *  Y  C  T  E  H  G  S  C  F  L  N  D  P  L  E  R   : A  P  K  C  L  E  A  F  R  N  S  F  R  S  G  N  Y  *  N  C  H  Y  K  T  V  I  A  V  I  L  *  R  C  Q  E  E  Y  *  R  L  G  T  *  S  N  H  A  F  S   : G  K  S  H  Q  K  R  S  S  Q  C  V  H  Q  E  T  L  Q  :  R  K  P  P  R  R  N  V  A  R  T  *  *  D  S  H  E  E  K  A  Y  T  *  D  T  S  C  S  S  A  S  F  Q   : D  I  G  G  V  T  T  *  C  *  D  S  *  K  G  L  *  L  G  Y  *  S  D  R  P  S  K  D  S  R  A  S  I  I  I  N  V  H  Y  K  Q  W  L  N  W  F  T  Y  Q  F  S  K  E  L  *  I  A  Q  C  I  P  F  R  *  A  T  V  T  N  V  W  W  C  R  F  K  R  W  W  A  *  C  W  Y  L  S  N  S  R  C  I  R  D  S  I  D  A  G  F  D  H  S  R  V  I  Y  L  L  S  P  P  S  L  Q  N  P  S  L  V  Q  W  S  A  T  I  F  C  H  G  Q  C  F  A  E  L  I  A  I  G  F  Y  P  L  T  V  Y  F  Y  V  N  Y  K  F  I  V  R  R  S  C  T  K  *  E  G  T  F  R  L  Y  R  K  R  L  V  L  L  P  F  V  M  I  V  G  N  L  F  S  S  R  Q  F  L  S  S  I  L  H  L  L  S  Q  F  C  Q  M  *  *  *  E  I  S  S  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72947" stop="72930"/>
                    <exon start="72554" stop="72441"/>
                    <exon start="72306" stop="72211"/>
                    <exon start="72074" stop="72032"/>
                    <exon start="71678" stop="71530"/>
                    <exon start="71433" stop="71287"/>
                    <exon start="70524" stop="70472"/>
                    <exon start="70258" stop="70159"/>
                    <exon start="69822" stop="69550"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLIEMEMDYINTSHPNFIGGTKAHEMALQQVKSSRIAAPNPRQKDGVDLEKAPTSERSLKSRAILARSVGGFVPDQVVRPAPEVEKTTASGSNVGSSWGISSIFGGSDNRASVKDNFINKPFSDTALSMDHAFSMIHLREPPSVLRPSETHSDQETIEIAITKLLLRSYYDVVRKNIEDSVPKAIMHFLVNHTKRDLHNVFIKKLYRENLLEEMLQEPDEIAMKRKRTRETLRVLQQAFKTLEELPLDAETVERGYSLGTDLTGLPKIHGLPSSSMYTTSSGSTGSHTSSPKSSRLRNASHSGELQLPMYGGVDSNGGGHNAGIYPTVGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69580" stop="69338"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CWYLSNSRCIRDSIDAGFDHSRVIYLLSPPSLQNPSLVQWSATIFCHGQCFAELIAIGFYPLTVYFYVNYKFIVRRSCTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="69897" e_stop="69891"/>
            <exon e_start="69822" e_stop="69449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.944" e_score="0.714"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.714">
            <gDNA_exon_boundary e_start="69897" e_stop="69891" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.944">
            <gDNA_intron_boundary i_start="69890" i_stop="69823" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69822" e_stop="69449" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69897" stop="69891"/>
              <exon start="69822" stop="69449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69897" stop="69891"/>
              <exon start="69822" stop="69472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTAG : ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATT</gDNA_template>
            <first_frame> S  L   : D  I  G  G  V  T  T  *  C  *  D  S  *  K  G  L  *  L  G  Y  *  S  D  R  P  S  K  D  S  R  A  S  I  I  I  N  V  H  Y  K  Q  W  L  N  W  F  T  Y  Q  F  S  K  E  L  *  I  A  Q  C  I  P  F  R  *  A  T  V  T  N  V  W  W  C  R  F  K  R  W  W  A  *  C  W  Y  L  S  N  S  R  C  I  R  D  S  I  D  A  G  F  D  H  S  R  V  I  Y  L  L  S  P  P  S  L  Q  N  P  S  L  V  Q  W  S  A  T  I </first_frame>
            <second_frame>  L  *  :  T  L  E  E  L  P  L  D  A  E  T  V  E  R  G  Y  S  L  G  T  D  L  T  G  L  P  K  I  H  G  L  P  S  S  S  M  Y  T  T  S  S  G  S  T  G  S  H  T  S  S  P  K  S  S  R  L  R  N  A  S  H  S  G  E  L  Q  L  P  M  Y  G  G  V  D  S  N  G  G  G  H  N  A  G  I  Y  P  T  V  G  V  *  E  T  Q  *  M  Q  G  L  I  I  H  E  *  F  I  C  S  L  H  H  H  C  K  T  R  L  W  C  S  G  V  L  L   </second_frame>
            <third_frame>   S  R :   H  W  R  S  Y  H  L  M  L  R  Q  L  K  G  V  I  A  W  V  L  I  *  Q  A  F  Q  R  F  T  G  F  H  H  H  Q  C  T  L  Q  A  V  A  Q  L  V  H  I  P  V  L  Q  R  A  L  D  C  A  M  H  P  I  Q  V  S  Y  S  Y  Q  C  M  V  V  *  I  Q  T  V  V  G  I  M  L  V  F  I  Q  Q  *  V  Y  K  R  L  N  R  C  R  V  *  S  F  T  S  N  L  F  A  L  S  T  I  I  A  K  P  V  S  G  A  V  E  C  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69822" stop="69550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLEELPLDAETVERGYSLGTDLTGLPKIHGLPSSSMYTTSSGSTGSHTSSPKSSRLRNASHSGELQLPMYGGVDSNGGGHNAGIYPTVGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="80026" PGL_stop="73408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80026" e_stop="79505"/>
            <exon e_start="78588" e_stop="78306"/>
            <exon e_start="78224" e_stop="78196"/>
            <exon e_start="78102" e_stop="78001"/>
            <exon e_start="75744" e_stop="75676"/>
            <exon e_start="75591" e_stop="75532"/>
            <exon e_start="74659" e_stop="74546"/>
            <exon e_start="74362" e_stop="74314"/>
            <exon e_start="74149" e_stop="74040"/>
            <exon e_start="73457" e_stop="73408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.855" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="0.963"/>
          <exon-intron don_prob="0.988" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="0.991"/>
          <exon-intron don_prob="0.993" acc_prob="0.534" e_score="1.000"/>
          <exon-intron don_prob="0.729" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80026" e_stop="79505" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.855" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79504" i_stop="78589" i_length="916"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="78588" e_stop="78306" e_length="283"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="78305" i_stop="78225" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78224" e_stop="78196" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.990">
            <gDNA_intron_boundary i_start="78195" i_stop="78103" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78102" e_stop="78001" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="78000" i_stop="75745" i_length="2256"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75744" e_stop="75676" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="75675" i_stop="75592" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75591" e_stop="75532" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.904" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75531" i_stop="74660" i_length="872"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="74659" e_stop="74546" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="74545" i_stop="74363" i_length="183"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="74362" e_stop="74314" e_length="49"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.534">
            <gDNA_intron_boundary i_start="74313" i_stop="74150" i_length="164"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74149" e_stop="74040" e_length="110"/>
          </exon>
          <intron i_serial="9" don_prob="0.729" acc_prob="0.993">
            <gDNA_intron_boundary i_start="74039" i_stop="73458" i_length="582"/>
          </intron>
          <exon e_serial="10" e_score="0.960">
            <gDNA_exon_boundary e_start="73457" e_stop="73408" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80026" stop="79505"/>
              <exon start="78588" stop="78570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80022" stop="79505"/>
              <exon start="78588" stop="78345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80017" stop="79505"/>
              <exon start="78588" stop="78559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79982" stop="79505"/>
              <exon start="78588" stop="78404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78364" stop="78306"/>
              <exon start="78224" stop="78196"/>
              <exon start="78102" stop="78001"/>
              <exon start="75744" stop="75676"/>
              <exon start="75591" stop="75532"/>
              <exon start="74659" stop="74546"/>
              <exon start="74362" stop="74314"/>
              <exon start="74149" stop="74040"/>
              <exon start="73457" stop="73408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAACGAGTAACGATTCTCGCTTTGTTTCTTGGGCAGTAAGACAGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAG : GCGGAGACAGAAAGGGAAGCAGGAGGAAATAAAGGTGTCTCGGACAAGCAGATACGGTTGAAGATTTACTCACCAAATGTTCTTGATATTACTCTAGTGGATTTGCCTGGCATAACAAAGGTGCCTGTTGGTGATCAACCCTCTGATATTGAAGCTCGGATCAGAACTATGATCATGTCGTATATTAAGGTCCCAAGCTGCTTAATATTGGCTGTAACACCAGCCAATTCAGACTTAGCCAACTCAGATGCTCTTCAGATTGCTGGGAATGCTGACCCTGATG : GTTATCGAACTATTGGCGTCATCACAAAG : TTGGACATCATGGATAGGGGTACTGATGCTCGTAACTTTTTACTTGGAAAAGTGATTCCCCTTCGCCTTGGTTATGTTGGAATAGTGAATCGTAATCAGGAG : GATATTACGATGAATCGGAGTATTAAGGATGCACTTGTAGCTGAGGAGAAGTTCTTCCGCAACCGTCCT : GTATATAGTGATCTTGCTGATCGCTGTGGTGTACCTCAATTGGCTAAAAAGTTGAACCAG : ATTTTGGTGCAACACATCAAAAAACTCCTTCCAGGATTGAAATCACGCATTAGTGCTGGACTTGTGTCTGTCGCAAAGGAGCATGCTAGCTATGGGGAGATCACCGAGTCAAAG : GCTGGTATGGGTGCTCTCCTTCTGAACATTCTTTCCAAGTACAGTGAAG : CATTCTCTTCAATGATAGAAGGCAAAAATGAAGAAATGTCAACTTCTGAGCTTTCTGGTGGAGCAAGGATTCATTACATTTTTCAGAACATATTTGTGAAAAGTTTGGAG : GAAGTTGATCCTTGTGAAGATTTAAGCGATGATGACATCCGAACTGCCAT</gDNA_template>
            <first_frame> E  N  E  *  R  F  S  L  C  F  L  G  S  K  T  D  F  R  F  L  F  Y  A  I  H  E  T  F  P  H  S  S  L  N  N  P  L  L  G  F  Y  Y  R  Q  S  P  V  I  L  Y  S  I  L  E  F  N  M  A  E  E  I  S  P  S  N  S  P  D  A  A  S  A  A  S  L  G  H  S  V  I  P  I  V  N  K  L  Q  D  I  F  A  Q  L  G  S  Q  S  T  I  E  L  P  Q  V  A  V  V  G  S  Q  S  S  G  K  S  S  V  L  E  A  L  V  G  R  D  F  L  P  R  G  S  D  I  C  T  R  R  P  L  V  L  Q  L  L  K  H  N  S  D  E  E  Y  G  E  F  L  H  L  P  E  K  R  F  Y  D  F  N  E  I  R  W  E  I  Q  :  A  E  T  E  R  E  A  G  G  N  K  G  V  S  D  K  Q  I  R  L  K  I  Y  S  P  N  V  L  D  I  T  L  V  D  L  P  G  I  T  K  V  P  V  G  D  Q  P  S  D  I  E  A  R  I  R  T  M  I  M  S  Y  I  K  V  P  S  C  L  I  L  A  V  T  P  A  N  S  D  L  A  N  S  D  A  L  Q  I  A  G  N  A  D  P  D   : G  Y  R  T  I  G  V  I  T  K  :  L  D  I  M  D  R  G  T  D  A  R  N  F  L  L  G  K  V  I  P  L  R  L  G  Y  V  G  I  V  N  R  N  Q  E  :  D  I  T  M  N  R  S  I  K  D  A  L  V  A  E  E  K  F  F  R  N  R  P  :  V  Y  S  D  L  A  D  R  C  G  V  P  Q  L  A  K  K  L  N  Q  :  I  L  V  Q  H  I  K  K  L  L  P  G  L  K  S  R  I  S  A  G  L  V  S  V  A  K  E  H  A  S  Y  G  E  I  T  E  S  K  :  A  G  M  G  A  L  L  L  N  I  L  S  K  Y  S  E   : A  F  S  S  M  I  E  G  K  N  E  E  M  S  T  S  E  L  S  G  G  A  R  I  H  Y  I  F  Q  N  I  F  V  K  S  L  E  :  E  V  D  P  C  E  D  L  S  D  D  D  I  R  T  A   </first_frame>
            <second_frame>  K  T  S  N  D  S  R  F  V  S  W  A  V  R  Q  I  S  A  F  F  S  T  Q  S  M  R  L  F  L  I  Q  A  S  T  I  H  F  *  G  F  T  I  V  N  L  R  *  S  C  I  V  F  *  N  L  T  W  R  K  K  Y  H  R  Q  T  L  P  M  R  R  R  R  R  H  W  V  I  Q  *  Y  L  *  *  T  S  Y  K  I  Y  S  H  S  *  E  V  N  P  R  L  S  C  H  R  L  L  L  *  G  V  K  V  V  A  N  Q  V  F  L  R  R  L  *  V  E  I  S  C  L  E  G  L  I  Y  V  L  G  D  L  L  F  Y  S  S  L  S  I  I  L  M  R  N  T  E  S  S  C  T  F  L  R  N  V  S  M  I  L  M  K  F  V  G  R  F  R :   R  R  Q  K  G  K  Q  E  E  I  K  V  S  R  T  S  R  Y  G  *  R  F  T  H  Q  M  F  L  I  L  L  *  W  I  C  L  A  *  Q  R  C  L  L  V  I  N  P  L  I  L  K  L  G  S  E  L  *  S  C  R  I  L  R  S  Q  A  A  *  Y  W  L  *  H  Q  P  I  Q  T  *  P  T  Q  M  L  F  R  L  L  G  M  L  T  L  M  :  V  I  E  L  L  A  S  S  Q  S :   W  T  S  W  I  G  V  L  M  L  V  T  F  Y  L  E  K  *  F  P  F  A  L  V  M  L  E  *  *  I  V  I  R  R :   I  L  R  *  I  G  V  L  R  M  H  L  *  L  R  R  S  S  S  A  T  V  L :   Y  I  V  I  L  L  I  A  V  V  Y  L  N  W  L  K  S  *  T  R :   F  W  C  N  T  S  K  N  S  F  Q  D  *  N  H  A  L  V  L  D  L  C  L  S  Q  R  S  M  L  A  M  G  R  S  P  S  Q  R :   L  V  W  V  L  S  F  *  T  F  F  P  S  T  V  K  :  H  S  L  Q  *  *  K  A  K  M  K  K  C  Q  L  L  S  F  L  V  E  Q  G  F  I  T  F  F  R  T  Y  L  *  K  V  W  R :   K  L  I  L  V  K  I  *  A  M  M  T  S  E  L  P  </second_frame>
            <third_frame>   K  R  V  T  I  L  A  L  F  L  G  Q  *  D  R  F  P  L  S  F  L  R  N  P  *  D  F  S  S  F  K  P  Q  Q  S  T  S  R  V  L  L  S  S  I  S  G  D  L  V  *  Y  S  R  I  *  H  G  G  R  N  I  T  V  K  L  S  R  C  G  V  G  G  V  I  G  S  F  S  N  T  Y  S  E  Q  A  T  R  Y  I  R  T  A  R  K  S  I  H  D  *  A  A  T  G  C  C  C  R  E  S  K  *  W  Q  I  K  C  S  *  G  A  C  R  S  R  F  L  A  *  R  V  *  Y  M  Y  *  A  T  S  C  S  T  A  P  *  A  *  F  *  *  G  I  R  R  V  L  A  P  S  *  E  T  F  L  *  F  *  *  N  S  L  G  D  S   : G  G  D  R  K  G  S  R  R  K  *  R  C  L  G  Q  A  D  T  V  E  D  L  L  T  K  C  S  *  Y  Y  S  S  G  F  A  W  H  N  K  G  A  C  W  *  S  T  L  *  Y  *  S  S  D  Q  N  Y  D  H  V  V  Y  *  G  P  K  L  L  N  I  G  C  N  T  S  Q  F  R  L  S  Q  L  R  C  S  S  D  C  W  E  C  *  P  *  W :   L  S  N  Y  W  R  H  H  K   : V  G  H  H  G  *  G  Y  *  C  S  *  L  F  T  W  K  S  D  S  P  S  P  W  L  C  W  N  S  E  S  *  S  G   : G  Y  Y  D  E  S  E  Y  *  G  C  T  C  S  *  G  E  V  L  P  Q  P  S   : C  I  *  *  S  C  *  S  L  W  C  T  S  I  G  *  K  V  E  P   : D  F  G  A  T  H  Q  K  T  P  S  R  I  E  I  T  H  *  C  W  T  C  V  C  R  K  G  A  C  *  L  W  G  D  H  R  V  K   : G  W  Y  G  C  S  P  S  E  H  S  F  Q  V  Q  *  S :   I  L  F  N  D  R  R  Q  K  *  R  N  V  N  F  *  A  F  W  W  S  K  D  S  L  H  F  S  E  H  I  C  E  K  F  G   : G  S  *  S  L  *  R  F  K  R  *  *  H  P  N  C  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80014" stop="79505"/>
                    <exon start="78588" stop="78306"/>
                    <exon start="78224" stop="78196"/>
                    <exon start="78102" stop="78001"/>
                    <exon start="75744" stop="75676"/>
                    <exon start="75591" stop="75532"/>
                    <exon start="74659" stop="74546"/>
                    <exon start="74362" stop="74314"/>
                    <exon start="74149" stop="74040"/>
                    <exon start="73457" stop="73410"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFSLCFLGSKTDFRFLFYAIHETFPHSSLNNPLLGFYYRQSPVILYSILEFNMAEEISPSNSPDAASAASLGHSVIPIVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGSDICTRRPLVLQLLKHNSDEEYGEFLHLPEKRFYDFNEIRWEIQAETEREAGGNKGVSDKQIRLKIYSPNVLDITLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKVPSCLILAVTPANSDLANSDALQIAGNADPDGYRTIGVITKLDIMDRGTDARNFLLGKVIPLRLGYVGIVNRNQEDITMNRSIKDALVAEEKFFRNRPVYSDLADRCGVPQLAKKLNQILVQHIKKLLPGLKSRISAGLVSVAKEHASYGEITESKAGMGALLLNILSKYSEAFSSMIEGKNEEMSTSELSGGARIHYIFQNIFVKSLEEVDPCEDLSDDDIRTA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76317" e_stop="76204"/>
            <exon e_start="75744" e_stop="75676"/>
            <exon e_start="75591" e_stop="75532"/>
            <exon e_start="74659" e_stop="74546"/>
            <exon e_start="74362" e_stop="74314"/>
            <exon e_start="74149" e_stop="74040"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.534" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76317" e_stop="76204" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.977">
            <gDNA_intron_boundary i_start="76203" i_stop="75745" i_length="459"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75744" e_stop="75676" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="75675" i_stop="75592" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75591" e_stop="75532" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.904" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75531" i_stop="74660" i_length="872"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74659" e_stop="74546" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="74545" i_stop="74363" i_length="183"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74362" e_stop="74314" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.534">
            <gDNA_intron_boundary i_start="74313" i_stop="74150" i_length="164"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74149" e_stop="74040" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76317" stop="76204"/>
              <exon start="75744" stop="75676"/>
              <exon start="75591" stop="75532"/>
              <exon start="74659" stop="74546"/>
              <exon start="74362" stop="74314"/>
              <exon start="74149" stop="74040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAATCCTTATACATTACAATTATTTTAAGGATAATTTAAAACAGTAATAGGGCACCATAACCAAAATATACAAGGAAGTATCTACAATCAAGTCTATGATGGGTCAATAGAG : GATATTACGATGAATCGGAGTATTAAGGATGCACTTGTAGCTGAGGAGAAGTTCTTCCGCAACCGTCCT : GTATATAGTGATCTTGCTGATCGCTGTGGTGTACCTCAATTGGCTAAAAAGTTGAACCAG : ATTTTGGTGCAACACATCAAAAAACTCCTTCCAGGATTGAAATCACGCATTAGTGCTGGACTTGTGTCTGTCGCAAAGGAGCATGCTAGCTATGGGGAGATCACCGAGTCAAAG : GCTGGTATGGGTGCTCTCCTTCTGAACATTCTTTCCAAGTACAGTGAAG : CATTCTCTTCAATGATAGAAGGCAAAAATGAAGAAATGTCAACTTCTGAGCTTTCTGGTGGAGCAAGGATTCATTACATTTTTCAGAACATATTTGTGAAAAGTTTGGAG</gDNA_template>
            <first_frame> L  N  P  Y  T  L  Q  L  F  *  G  *  F  K  T  V  I  G  H  H  N  Q  N  I  Q  G  S  I  Y  N  Q  V  Y  D  G  S  I  E  :  D  I  T  M  N  R  S  I  K  D  A  L  V  A  E  E  K  F  F  R  N  R  P  :  V  Y  S  D  L  A  D  R  C  G  V  P  Q  L  A  K  K  L  N  Q  :  I  L  V  Q  H  I  K  K  L  L  P  G  L  K  S  R  I  S  A  G  L  V  S  V  A  K  E  H  A  S  Y  G  E  I  T  E  S  K  :  A  G  M  G  A  L  L  L  N  I  L  S  K  Y  S  E   : A  F  S  S  M  I  E  G  K  N  E  E  M  S  T  S  E  L  S  G  G  A  R  I  H  Y  I  F  Q  N  I  F  V  K  S  L  E </first_frame>
            <second_frame>  *  I  L  I  H  Y  N  Y  F  K  D  N  L  K  Q  *  *  G  T  I  T  K  I  Y  K  E  V  S  T  I  K  S  M  M  G  Q  *  R :   I  L  R  *  I  G  V  L  R  M  H  L  *  L  R  R  S  S  S  A  T  V  L :   Y  I  V  I  L  L  I  A  V  V  Y  L  N  W  L  K  S  *  T  R :   F  W  C  N  T  S  K  N  S  F  Q  D  *  N  H  A  L  V  L  D  L  C  L  S  Q  R  S  M  L  A  M  G  R  S  P  S  Q  R :   L  V  W  V  L  S  F  *  T  F  F  P  S  T  V  K  :  H  S  L  Q  *  *  K  A  K  M  K  K  C  Q  L  L  S  F  L  V  E  Q  G  F  I  T  F  F  R  T  Y  L  *  K  V  W   </second_frame>
            <third_frame>   E  S  L  Y  I  T  I  I  L  R  I  I  *  N  S  N  R  A  P  *  P  K  Y  T  R  K  Y  L  Q  S  S  L  *  W  V  N  R   : G  Y  Y  D  E  S  E  Y  *  G  C  T  C  S  *  G  E  V  L  P  Q  P  S   : C  I  *  *  S  C  *  S  L  W  C  T  S  I  G  *  K  V  E  P   : D  F  G  A  T  H  Q  K  T  P  S  R  I  E  I  T  H  *  C  W  T  C  V  C  R  K  G  A  C  *  L  W  G  D  H  R  V  K   : G  W  Y  G  C  S  P  S  E  H  S  F  Q  V  Q  *  S :   I  L  F  N  D  R  R  Q  K  *  R  N  V  N  F  *  A  F  W  W  S  K  D  S  L  H  F  S  E  H  I  C  E  K  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76281" stop="76204"/>
                    <exon start="75744" stop="75676"/>
                    <exon start="75591" stop="75532"/>
                    <exon start="74659" stop="74546"/>
                    <exon start="74362" stop="74314"/>
                    <exon start="74149" stop="74040"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKTVIGHHNQNIQGSIYNQVYDGSIEDITMNRSIKDALVAEEKFFRNRPVYSDLADRCGVPQLAKKLNQILVQHIKKLLPGLKSRISAGLVSVAKEHASYGEITESKAGMGALLLNILSKYSEAFSSMIEGKNEEMSTSELSGGARIHYIFQNIFVKSLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="84504" PGL_stop="86038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84504" e_stop="84568"/>
            <exon e_start="85003" e_stop="85388"/>
            <exon e_start="85497" e_stop="85638"/>
            <exon e_start="85915" e_stop="86038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.813" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84504" e_stop="84568" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.951">
            <gDNA_intron_boundary i_start="84569" i_stop="85002" i_length="434"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85003" e_stop="85388" e_length="386"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.996">
            <gDNA_intron_boundary i_start="85389" i_stop="85496" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85497" e_stop="85638" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.813">
            <gDNA_intron_boundary i_start="85639" i_stop="85914" i_length="276"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85915" e_stop="86038" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84504" stop="84568"/>
              <exon start="85003" stop="85388"/>
              <exon start="85497" stop="85638"/>
              <exon start="85915" stop="86019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84504" stop="84568"/>
              <exon start="85003" stop="85388"/>
              <exon start="85497" stop="85638"/>
              <exon start="85915" stop="86003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84504" stop="84568"/>
              <exon start="85003" stop="85388"/>
              <exon start="85497" stop="85575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84536" stop="84568"/>
              <exon start="85003" stop="85388"/>
              <exon start="85497" stop="85638"/>
              <exon start="85915" stop="86038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84536" stop="84568"/>
              <exon start="85003" stop="85388"/>
              <exon start="85497" stop="85638"/>
              <exon start="85915" stop="85954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84536" stop="84568"/>
              <exon start="85003" stop="85388"/>
              <exon start="85497" stop="85638"/>
              <exon start="85915" stop="85932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTGAAGATTTCACCGCTTCTAACTGGTAAAAGATCATGTTTCGCCGTCGCCGGAGCTCTATTG : GACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAG : GATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAG : ATGACTTCAATTGGCTGCAGAGGGTCAAGACTGCCATTGCATTAGCTCGCTTGCTTGCCTATCTGCATGATAGGAATCAATCATACCTGATTCGAAACTTGGCTCCATCCCACATAGTTGTTGA</gDNA_template>
            <first_frame> S  *  R  F  H  R  F  *  L  V  K  D  H  V  S  P  S  P  E  L  Y  W :   T  L  Q  T  A  V  R  T  R  G  L  S  R  *  G  G  M  P  R  *  G  *  S  F  *  P  Q  V  K  *  G  M  P  C  G  E  *  T  S  *  I  L  I  R  G  A  E  S  L  Y  R  S  I  F  S  G  E  P  Y  W  S  H  *  L  R  K  A  L  P  W  E  N  A  H  C  F  *  S  R  *  S  L  *  G  C  H  R  Q  D  S  G  *  G  *  K  E  I  S  Y  A  N  A  R  F  C  *  S  Q  S  S  G  *  *  *  K  G  D  S  N  T  *  Q  Q  T  V  K  I  G   : G  *  T  K  I  F  A  S  S  K  D  *  G  Q  S  Q  L  N  E  S  C  W  I  L  S  Q  G  D  C  G  C  C  L  *  S  K  S  T  *  H  L  A  *  L  D  F  S  R :   *  L  Q  L  A  A  E  G  Q  D  C  H  C  I  S  S  L  A  C  L  S  A  *  *  E  S  I  I  P  D  S  K  L  G  S  I  P  H  S  C  * </first_frame>
            <second_frame>  P  E  D  F  T  A  S  N  W  *  K  I  M  F  R  R  R  R  S  S  I   : G  P  F  K  L  L  C  G  Q  E  D  C  L  V  K  E  E  C  L  V  K  D  D  L  F  D  L  K  S  N  E  E  C  P  V  E  N  E  L  L  E  F  S  S  E  E  L  S  H  F  T  G  Q  Y  S  P  E  N  L  I  G  V  T  D  L  G  K  L  Y  R  G  K  M  P  I  V  S  N  Q  G  K  V  Y  K  D  V  T  V  K  I  L  V  E  D  E  R  R  F  R  M  Q  M  P  A  S  V  K  V  K  V  L  A  D  D  E  R  A  I  L  I  H  D  S  K  L  L  R  L  E  :  D  E  L  K  F  L  Q  A  P  K  I  R  G  N  R  S  L  M  K  V  V  G  Y  C  R  K  E  I  V  G  V  V  Y  D  L  N  P  L  D  T  L  H  N  L  I  F  Q   : D  D  F  N  W  L  Q  R  V  K  T  A  I  A  L  A  R  L  L  A  Y  L  H  D  R  N  Q  S  Y  L  I  R  N  L  A  P  S  H  I  V  V   </second_frame>
            <third_frame>   L  K  I  S  P  L  L  T  G  K  R  S  C  F  A  V  A  G  A  L  L  :  D  P  S  N  C  C  A  D  K  R  I  V  S  L  R  R  N  A  S  L  R  M  I  F  L  T  S  S  Q  M  R  N  A  L  W  R  M  N  F  L  N  S  H  Q  R  S  *  V  T  L  P  V  N  I  L  R  R  T  L  L  E  S  L  T  *  E  S  S  T  V  G  K  C  P  L  F  L  I  K  V  K  F  I  R  M  S  P  S  R  F  W  L  R  M  K  G  D  F  V  C  K  C  P  L  L  L  K  S  K  F  W  L  M  M  K  G  R  F  *  Y  M  T  A  N  C  *  D  W  R :   M  N  *  N  F  C  K  L  Q  R  L  G  A  I  A  A  *  *  K  L  L  D  I  V  A  R  R  L  W  V  L  F  M  I  *  I  H  L  T  P  C  I  T  *  F  F  K  :  M  T  S  I  G  C  R  G  S  R  L  P  L  H  *  L  A  C  L  P  I  C  M  I  G  I  N  H  T  *  F  E  T  W  L  H  P  T  *  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84535" stop="84568"/>
                    <exon start="85003" stop="85388"/>
                    <exon start="85497" stop="85638"/>
                    <exon start="85915" stop="86036"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIMFRRRRSSIGPFKLLCGQEDCLVKEECLVKDDLFDLKSNEECPVENELLEFSSEELSHFTGQYSPENLIGVTDLGKLYRGKMPIVSNQGKVYKDVTVKILVEDERRFRMQMPASVKVKVLADDERAILIHDSKLLRLEDELKFLQAPKIRGNRSLMKVVGYCRKEIVGVVYDLNPLDTLHNLIFQDDFNWLQRVKTAIALARLLAYLHDRNQSYLIRNLAPSHIVV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="88835" PGL_stop="91311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88835" e_stop="89349"/>
            <exon e_start="89433" e_stop="89597"/>
            <exon e_start="90411" e_stop="90827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88835" e_stop="89349" e_length="515"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89350" i_stop="89432" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89433" e_stop="89597" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.945">
            <gDNA_intron_boundary i_start="89598" i_stop="90410" i_length="813"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="90411" e_stop="90827" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88835" stop="89349"/>
              <exon start="89433" stop="89591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89242" stop="89349"/>
              <exon start="89433" stop="89597"/>
              <exon start="90411" stop="90800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89528" stop="89597"/>
              <exon start="90411" stop="90827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358983" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTACTTATATGTCGTTAGTCGAGGATTAGAAAACTCCAACCCCATCGAACGTCTTTTGTTTCATCAAACTCAAATTAAAATTTGAAACTTTAAGAGATAGATGTTTAAGTTTGGAAATCGCTTAGAGTTAAAGTTTTAACTTCAATGAGATATTCTAAAAAATTGGAGAATTCGCATAAGAATTTCTAATAAGGTTTTAATAACAAAAAATTGCAAAAGTTAAAACAATAAATAGTCAAATTGTTAATCGCCGGAAAACCGTATTAAGCGGAGTGTCTTAGGTGCCTTACACCTTCCTAAGACACTAATATGAATCCCGAACATAGCTACTTTCGAAACTCCTAAAAAGTCAACAATACCTTTAAAATAAAATAAACTCTTTTTCGAAATAATTTTTCGATAAAACAATATTGAACACTGTACATCACCAAGATGTAGCCACAGGTGATTCATGATACTCTACAGCCTTGAAATTTAGGCTCTTCAGACAACATGGCTTTCATATCTCTCCAG : ATATATTTAATGATTTTAAGGACGTGAATGACAATATGAAGCAAAGTGGTATATTAGCATTTATGAGAGAATGCCAAATGCTAATCCTCTTTTGCTAGAGCTTGCTAAATTAGACTTCAACATTGTTCAAGTAACACACCAACAAGATTTGAAAAGTCTATCAAG : GTGGTGGAAGAAAACAGGACTAGCAAAAAAGCTTTCATTTTCAAGGGATATACTTGTTGAGAATATGTTTTGGACAGTGGGTGCATTGTTTGAGCCTCAACATAGCTACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACACTTGCTATTCAAAGGTAATTATAATTTTCTATCGCAAAATAATTACAAAATTTGATTTTCTAGTAAAAATTCAGATGGGATACAAAAGCAATGGACCAAATTCCATACTCTATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGTTGCGTATGATGTTCTCAAAAATCATGACATCAACTCCTACCCTACCTTACAAAATCA</gDNA_template>
            <first_frame> F  Y  L  Y  V  V  S  R  G  L  E  N  S  N  P  I  E  R  L  L  F  H  Q  T  Q  I  K  I  *  N  F  K  R  *  M  F  K  F  G  N  R  L  E  L  K  F  *  L  Q  *  D  I  L  K  N  W  R  I  R  I  R  I  S  N  K  V  L  I  T  K  N  C  K  S  *  N  N  K  *  S  N  C  *  S  P  E  N  R  I  K  R  S  V  L  G  A  L  H  L  P  K  T  L  I  *  I  P  N  I  A  T  F  E  T  P  K  K  S  T  I  P  L  K  *  N  K  L  F  F  E  I  I  F  R  *  N  N  I  E  H  C  T  S  P  R  C  S  H  R  *  F  M  I  L  Y  S  L  E  I  *  A  L  Q  T  T  W  L  S  Y  L  S  R :   Y  I  *  *  F  *  G  R  E  *  Q  Y  E  A  K  W  Y  I  S  I  Y  E  R  M  P  N  A  N  P  L  L  L  E  L  A  K  L  D  F  N  I  V  Q  V  T  H  Q  Q  D  L  K  S  L  S  R :   W  W  K  K  T  G  L  A  K  K  L  S  F  S  R  D  I  L  V  E  N  M  F  W  T  V  G  A  L  F  E  P  Q  H  S  Y  F  R  R  L  I  T  K  V  I  V  F  I  S  I  I  D  D  I  Y  D  V  Y  G  T  L  D  E  L  E  L  F  T  L  A  I  Q  R  *  L  *  F  S  I  A  K  *  L  Q  N  L  I  F  *  *  K  F  R  W  D  T  K  A  M  D  Q  I  P  Y  S  M  K  V  C  Y  L  A  L  I  N  I  I  N  E  V  A  Y  D  V  L  K  N  H  D  I  N  S  Y  P  T  L  Q  N   </first_frame>
            <second_frame>  F  T  Y  M  S  L  V  E  D  *  K  T  P  T  P  S  N  V  F  C  F  I  K  L  K  L  K  F  E  T  L  R  D  R  C  L  S  L  E  I  A  *  S  *  S  F  N  F  N  E  I  F  *  K  I  G  E  F  A  *  E  F  L  I  R  F  *  *  Q  K  I  A  K  V  K  T  I  N  S  Q  I  V  N  R  R  K  T  V  L  S  G  V  S  *  V  P  Y  T  F  L  R  H  *  Y  E  S  R  T  *  L  L  S  K  L  L  K  S  Q  Q  Y  L  *  N  K  I  N  S  F  S  K  *  F  F  D  K  T  I  L  N  T  V  H  H  Q  D  V  A  T  G  D  S  *  Y  S  T  A  L  K  F  R  L  F  R  Q  H  G  F  H  I  S  P   : D  I  F  N  D  F  K  D  V  N  D  N  M  K  Q  S  G  I  L  A  F  M  R  E  C  Q  M  L  I  L  F  C  *  S  L  L  N  *  T  S  T  L  F  K  *  H  T  N  K  I  *  K  V  Y  Q   : G  G  G  R  K  Q  D  *  Q  K  S  F  H  F  Q  G  I  Y  L  L  R  I  C  F  G  Q  W  V  H  C  L  S  L  N  I  A  T  F  E  D  *  *  Q  K  S  L  F  L  F  Q  S  *  M  T  F  M  M  F  M  A  R  L  M  S  W  N  S  S  H  L  L  F  K  G  N  Y  N  F  L  S  Q  N  N  Y  K  I  *  F  S  S  K  N  S  D  G  I  Q  K  Q  W  T  K  F  H  T  L  *  K  Y  V  I  L  H  S  L  I  L  S  M  K  L  R  M  M  F  S  K  I  M  T  S  T  P  T  L  P  Y  K  I  </second_frame>
            <third_frame>   L  L  I  C  R  *  S  R  I  R  K  L  Q  P  H  R  T  S  F  V  S  S  N  S  N  *  N  L  K  L  *  E  I  D  V  *  V  W  K  S  L  R  V  K  V  L  T  S  M  R  Y  S  K  K  L  E  N  S  H  K  N  F  *  *  G  F  N  N  K  K  L  Q  K  L  K  Q  *  I  V  K  L  L  I  A  G  K  P  Y  *  A  E  C  L  R  C  L  T  P  S  *  D  T  N  M  N  P  E  H  S  Y  F  R  N  S  *  K  V  N  N  T  F  K  I  K  *  T  L  F  R  N  N  F  S  I  K  Q  Y  *  T  L  Y  I  T  K  M  *  P  Q  V  I  H  D  T  L  Q  P  *  N  L  G  S  S  D  N  M  A  F  I  S  L  Q  :  I  Y  L  M  I  L  R  T  *  M  T  I  *  S  K  V  V  Y  *  H  L  *  E  N  A  K  C  *  S  S  F  A  R  A  C  *  I  R  L  Q  H  C  S  S  N  T  P  T  R  F  E  K  S  I  K  :  V  V  E  E  N  R  T  S  K  K  A  F  I  F  K  G  Y  T  C  *  E  Y  V  L  D  S  G  C  I  V  *  A  S  T  *  L  L  S  K  I  D  N  K  S  H  C  F  Y  F  N  H  R  *  H  L  *  C  L  W  H  A  *  *  V  G  T  L  H  T  C  Y  S  K  V  I  I  I  F  Y  R  K  I  I  T  K  F  D  F  L  V  K  I  Q  M  G  Y  K  S  N  G  P  N  S  I  L  Y  E  S  M  L  S  C  T  H  *  Y  Y  Q  *  S  C  V  *  C  S  Q  K  S  *  H  Q  L  L  P  Y  L  T  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89464" stop="89597"/>
                    <exon start="90411" stop="90633"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYEAKWYISIYERMPNANPLLLELAKLDFNIVQVTHQQDLKSLSRWWKKTGLAKKLSFSRDILVENMFWTVGALFEPQHSYFRRLITKVIVFISIIDDIYDVYGTLDELELFTLAIQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90517" e_stop="90629"/>
            <exon e_start="90690" e_stop="90827"/>
            <exon e_start="90923" e_stop="91172"/>
            <exon e_start="91303" e_stop="91311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.749" e_score="0.982"/>
          <exon-intron don_prob="0.999" acc_prob="0.845" e_score="0.942"/>
          <exon-intron don_prob="0.881" acc_prob="0.991" e_score="0.936"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="90517" e_stop="90629" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.749">
            <gDNA_intron_boundary i_start="90630" i_stop="90689" i_length="60"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="90690" e_stop="90827" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.845">
            <gDNA_intron_boundary i_start="90828" i_stop="90922" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="90923" e_stop="91172" e_length="250"/>
          </exon>
          <intron i_serial="3" don_prob="0.881" acc_prob="0.991">
            <gDNA_intron_boundary i_start="91173" i_stop="91302" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="0.889">
            <gDNA_exon_boundary e_start="91303" e_stop="91311" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90517" stop="90629"/>
              <exon start="90690" stop="90827"/>
              <exon start="90923" stop="91172"/>
              <exon start="91303" stop="91311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACACTTGCTATTCAAAG : ATGGGATACAAAAGCAATGGACCAAATTCCATACTCTATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGTTGCGTATGATGTTCTCAAAAATCATGACATCAACTCCTACCCTACCTTACAAAATCA : TGGGCAGATTTGTGCAAATCATACTTACAAGAAGCAAAATGGTAACCACAATGGATACAAGCCAAATCTGGAAGAGTATATGGATAATGCAAGGATCTCAATTGCAGTACCAATGATATTAGTCCATGTATTGGTCCTTGTCACAAATCAAATTACCAAAGAGGCCTTAGAATCCTTAACCAATTATCCTGATATTATTCGATGGTCTACTACTATTTTTCGTTTAAACGATGATTTGGGTACATCCTCG : GATGAATTG</gDNA_template>
            <first_frame> Y  F  R  R  L  I  T  K  V  I  V  F  I  S  I  I  D  D  I  Y  D  V  Y  G  T  L  D  E  L  E  L  F  T  L  A  I  Q  R :   W  D  T  K  A  M  D  Q  I  P  Y  S  M  K  V  C  Y  L  A  L  I  N  I  I  N  E  V  A  Y  D  V  L  K  N  H  D  I  N  S  Y  P  T  L  Q  N  H :   G  Q  I  C  A  N  H  T  Y  K  K  Q  N  G  N  H  N  G  Y  K  P  N  L  E  E  Y  M  D  N  A  R  I  S  I  A  V  P  M  I  L  V  H  V  L  V  L  V  T  N  Q  I  T  K  E  A  L  E  S  L  T  N  Y  P  D  I  I  R  W  S  T  T  I  F  R  L  N  D  D  L  G  T  S  S  :  D  E  L </first_frame>
            <second_frame>  T  F  E  D  *  *  Q  K  S  L  F  L  F  Q  S  *  M  T  F  M  M  F  M  A  R  L  M  S  W  N  S  S  H  L  L  F  K   : D  G  I  Q  K  Q  W  T  K  F  H  T  L  *  K  Y  V  I  L  H  S  L  I  L  S  M  K  L  R  M  M  F  S  K  I  M  T  S  T  P  T  L  P  Y  K  I   : M  G  R  F  V  Q  I  I  L  T  R  S  K  M  V  T  T  M  D  T  S  Q  I  W  K  S  I  W  I  M  Q  G  S  Q  L  Q  Y  Q  *  Y  *  S  M  Y  W  S  L  S  Q  I  K  L  P  K  R  P  *  N  P  *  P  I  I  L  I  L  F  D  G  L  L  L  F  F  V  *  T  M  I  W  V  H  P  R :   M  N   </second_frame>
            <third_frame>   L  S  K  I  D  N  K  S  H  C  F  Y  F  N  H  R  *  H  L  *  C  L  W  H  A  *  *  V  G  T  L  H  T  C  Y  S  K  :  M  G  Y  K  S  N  G  P  N  S  I  L  Y  E  S  M  L  S  C  T  H  *  Y  Y  Q  *  S  C  V  *  C  S  Q  K  S  *  H  Q  L  L  P  Y  L  T  K  S  :  W  A  D  L  C  K  S  Y  L  Q  E  A  K  W  *  P  Q  W  I  Q  A  K  S  G  R  V  Y  G  *  C  K  D  L  N  C  S  T  N  D  I  S  P  C  I  G  P  C  H  K  S  N  Y  Q  R  G  L  R  I  L  N  Q  L  S  *  Y  Y  S  M  V  Y  Y  Y  F  S  F  K  R  *  F  G  Y  I  L   : G  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90517" stop="90629"/>
                    <exon start="90690" stop="90827"/>
                    <exon start="90923" stop="91172"/>
                    <exon start="91303" stop="91311"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFRRLITKVIVFISIIDDIYDVYGTLDELELFTLAIQRWDTKAMDQIPYSMKVCYLALINIINEVAYDVLKNHDINSYPTLQNHGQICANHTYKKQNGNHNGYKPNLEEYMDNARISIAVPMILVHVLVLVTNQITKEALESLTNYPDIIRWSTTIFRLNDDLGTSSDEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="92566" PGL_stop="93345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92566" e_stop="92776"/>
            <exon e_start="92864" e_stop="93122"/>
            <exon e_start="93319" e_stop="93345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.594" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92566" e_stop="92776" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.594" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92777" i_stop="92863" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92864" e_stop="93122" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.948">
            <gDNA_intron_boundary i_start="93123" i_stop="93318" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93319" e_stop="93345" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92566" stop="92776"/>
              <exon start="92864" stop="93122"/>
              <exon start="93319" stop="93345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92578" stop="92776"/>
              <exon start="92864" stop="93080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92630" stop="92776"/>
              <exon start="92864" stop="93122"/>
              <exon start="93319" stop="93326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTGTTTAATTATTTGTATAGTCACGTGAAACATAAGTATTATGGATGTATAAACTGGAAATGACAATGTCTATTAGCAAATCAAATTTAATTTCGAAATTAGAGGTTCCAAAATCCTGCATTTCTAACGTGCCAATTCGACGATCTGGAAACTATCAACCTTCTATTTGGGACTATAATCATATTCAATCACTGAAGAATCATTATTCA : GACGAGAAATTCATGAGACGCCGCAATGAGCTGAAGATGGAAGTGAAGATTATGCTCAGTGATCGTAACATGAAGCAATTGGAACAGTTGGAGATTATTGATAATTTGCAAAGGCTTGGATTGTCTTATCACTTTGAAGATGAAATATACAGTATTTTGAATAACTTAAGTGACAAAGGTAGCAAAAGAGATCACTTGTATGCTAAAGCTCTTGAATTCAGGCTCTTGAGACAACATGGATTTAACATTGTTTCACAAG : AAACTTTTGGTGGTTTCTATGATAATA</gDNA_template>
            <first_frame> C  C  L  I  I  C  I  V  T  *  N  I  S  I  M  D  V  *  T  G  N  D  N  V  Y  *  Q  I  K  F  N  F  E  I  R  G  S  K  I  L  H  F  *  R  A  N  S  T  I  W  K  L  S  T  F  Y  L  G  L  *  S  Y  S  I  T  E  E  S  L  F   : R  R  E  I  H  E  T  P  Q  *  A  E  D  G  S  E  D  Y  A  Q  *  S  *  H  E  A  I  G  T  V  G  D  Y  *  *  F  A  K  A  W  I  V  L  S  L  *  R  *  N  I  Q  Y  F  E  *  L  K  *  Q  R  *  Q  K  R  S  L  V  C  *  S  S  *  I  Q  A  L  E  T  T  W  I  *  H  C  F  T  R :   N  F  W  W  F  L  *  *   </first_frame>
            <second_frame>  A  V  *  L  F  V  *  S  R  E  T  *  V  L  W  M  Y  K  L  E  M  T  M  S  I  S  K  S  N  L  I  S  K  L  E  V  P  K  S  C  I  S  N  V  P  I  R  R  S  G  N  Y  Q  P  S  I  W  D  Y  N  H  I  Q  S  L  K  N  H  Y  S  :  D  E  K  F  M  R  R  R  N  E  L  K  M  E  V  K  I  M  L  S  D  R  N  M  K  Q  L  E  Q  L  E  I  I  D  N  L  Q  R  L  G  L  S  Y  H  F  E  D  E  I  Y  S  I  L  N  N  L  S  D  K  G  S  K  R  D  H  L  Y  A  K  A  L  E  F  R  L  L  R  Q  H  G  F  N  I  V  S  Q   : E  T  F  G  G  F  Y  D  N  </second_frame>
            <third_frame>   L  F  N  Y  L  Y  S  H  V  K  H  K  Y  Y  G  C  I  N  W  K  *  Q  C  L  L  A  N  Q  I  *  F  R  N  *  R  F  Q  N  P  A  F  L  T  C  Q  F  D  D  L  E  T  I  N  L  L  F  G  T  I  I  I  F  N  H  *  R  I  I  I  Q :   T  R  N  S  *  D  A  A  M  S  *  R  W  K  *  R  L  C  S  V  I  V  T  *  S  N  W  N  S  W  R  L  L  I  I  C  K  G  L  D  C  L  I  T  L  K  M  K  Y  T  V  F  *  I  T  *  V  T  K  V  A  K  E  I  T  C  M  L  K  L  L  N  S  G  S  *  D  N  M  D  L  T  L  F  H  K  :  K  L  L  V  V  S  M  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92603" stop="92776"/>
                    <exon start="92864" stop="93122"/>
                    <exon start="93319" stop="93344"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLWMYKLEMTMSISKSNLISKLEVPKSCISNVPIRRSGNYQPSIWDYNHIQSLKNHYSDEKFMRRRNELKMEVKIMLSDRNMKQLEQLEIIDNLQRLGLSYHFEDEIYSILNNLSDKGSKRDHLYAKALEFRLLRQHGFNIVSQETFGGFYDN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="94227" PGL_stop="95775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94227" e_stop="94733"/>
            <exon e_start="94815" e_stop="95775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94227" e_stop="94733" e_length="507"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94734" i_stop="94814" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="94815" e_stop="95775" e_length="961"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94227" stop="94733"/>
              <exon start="94815" stop="95096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94228" stop="94614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95024" stop="95775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543947" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATACCAGATGGAGTATCGACGAATTGGATAGACTCCCAGACAATATGAAGATGTGTTATTATGCGCTCGATAACTTTATTAACCAATTGGCTGATGATGCTTTTGAAGAGCAAGGCATTTTCATTTCACCATATCTAAGAAATTCGGTAACTTATCCCTTCTTCTTTTTTTATTTCGAAAATAAGACAAATTATTATCATGTCTGCAAGTCTAACTCGATAGGTAGTATTACATTGTGAATTTAAATTTCAGTGGAGAGATTTGTGCAAATCATACCTGAGAGAAGCAAAGTGGTACCATAGCCAGTATATCCCAAGTATGGAAGAATATATGGACAACGCCTGGATTTCAATATCAGCTCCAGTAATATTAGTACATGCATATTTCCTCGTTGCCAACCCTGTAAACAAGGAGGCATTGCATTACTTGGAGAATAATTACCATGATATCATTCGTTGCTCAGCGTTAATTTTGAGGCTCGCCAATGATTTAGGAACATCATCG : GACGAGTTGAAAAGGGGTGACGTACCAAAATCAATACAATGTTACATGAACGAAACACAAGCTTCAGAAGAAGAGGCTAGACAATACATCAGACTGCTGATTAGCCAGACATGGAAGAAATTGAACGAAGCTCATTGGCTAGCAGCAGACCCCTTCCCAAAGATATTTGTTACGTGTGCTATGAACCTAGCAAGAATGGCACAATGCATGTATCAGCATGGTGATGGCCATGGCGGTAATAACTCCACGACTAAAAACCACATCATGGCGTTGCTCTTTGAATCCGTTCCTCTAGGACACAAACATTCTTCAGCAGAAAAAGAGGACCACTCTATGGTCAACTATAGAGAGAAATTCATGATCTAGGGGTCATTGAGTTGTGAATGAACTTTCACCTTGTTTGTAAGGTTTTGATTCCCCACCCTGCAATTTCCTCCCCATTTATAGAAGGGGCAGGGGGGAAGAGAGAAGGCTCAGTGGGTGCAGTATGCATAGTACACAATGCATTATCAAAACTGCATATGATTTGGCAGTTGATTCATAGCTATATAATCAATCACAGTGCCCTTTTTTGGGATCTGATAGCCTCAAGTTACTCGCCTCTTTCTGAAAGAAAGAAGAAACTTTACAAGGTTCCTTTATCAGAACTAAGGGAAGTTTGAACGTCTGACAGATCTCATTTCAGAGTATGGTCCAGAAGGAAAATTACAGCTCGCCAACAAATAACCTTTTTGAATTTTCAGTCATATTCTAATTTTGAATCATAGTGGACGATATGTCTTCCCACTATCAATAATATTGTACGTAATAGGATAGGAAACCTATCTATTCATCAAGTTCAAAGTGTCAATATCCATACAACAATAACATCCAAAAAAATGGACGATGATCCTTTAATAAGAACAGATATGGATGAATCGATATGGGACTTGTGCCATATTCTTGACTACTAGTGCAACTG</gDNA_template>
            <first_frame> R  I  P  D  G  V  S  T  N  W  I  D  S  Q  T  I  *  R  C  V  I  M  R  S  I  T  L  L  T  N  W  L  M  M  L  L  K  S  K  A  F  S  F  H  H  I  *  E  I  R  *  L  I  P  S  S  F  F  I  S  K  I  R  Q  I  I  I  M  S  A  S  L  T  R  *  V  V  L  H  C  E  F  K  F  Q  W  R  D  L  C  K  S  Y  L  R  E  A  K  W  Y  H  S  Q  Y  I  P  S  M  E  E  Y  M  D  N  A  W  I  S  I  S  A  P  V  I  L  V  H  A  Y  F  L  V  A  N  P  V  N  K  E  A  L  H  Y  L  E  N  N  Y  H  D  I  I  R  C  S  A  L  I  L  R  L  A  N  D  L  G  T  S  S  :  D  E  L  K  R  G  D  V  P  K  S  I  Q  C  Y  M  N  E  T  Q  A  S  E  E  E  A  R  Q  Y  I  R  L  L  I  S  Q  T  W  K  K  L  N  E  A  H  W  L  A  A  D  P  F  P  K  I  F  V  T  C  A  M  N  L  A  R  M  A  Q  C  M  Y  Q  H  G  D  G  H  G  G  N  N  S  T  T  K  N  H  I  M  A  L  L  F  E  S  V  P  L  G  H  K  H  S  S  A  E  K  E  D  H  S  M  V  N  Y  R  E  K  F  M  I  *  G  S  L  S  C  E  *  T  F  T  L  F  V  R  F  *  F  P  T  L  Q  F  P  P  H  L  *  K  G  Q  G  G  R  E  K  A  Q  W  V  Q  Y  A  *  Y  T  M  H  Y  Q  N  C  I  *  F  G  S  *  F  I  A  I  *  S  I  T  V  P  F  F  G  I  *  *  P  Q  V  T  R  L  F  L  K  E  R  R  N  F  T  R  F  L  Y  Q  N  *  G  K  F  E  R  L  T  D  L  I  S  E  Y  G  P  E  G  K  L  Q  L  A  N  K  *  P  F  *  I  F  S  H  I  L  I  L  N  H  S  G  R  Y  V  F  P  L  S  I  I  L  Y  V  I  G  *  E  T  Y  L  F  I  K  F  K  V  S  I  S  I  Q  Q  *  H  P  K  K  W  T  M  I  L  *  *  E  Q  I  W  M  N  R  Y  G  T  C  A  I  F  L  T  T  S  A  T  </first_frame>
            <second_frame>  E  Y  Q  M  E  Y  R  R  I  G  *  T  P  R  Q  Y  E  D  V  L  L  C  A  R  *  L  Y  *  P  I  G  *  *  C  F  *  R  A  R  H  F  H  F  T  I  S  K  K  F  G  N  L  S  L  L  L  F  L  F  R  K  *  D  K  L  L  S  C  L  Q  V  *  L  D  R  *  Y  Y  I  V  N  L  N  F  S  G  E  I  C  A  N  H  T  *  E  K  Q  S  G  T  I  A  S  I  S  Q  V  W  K  N  I  W  T  T  P  G  F  Q  Y  Q  L  Q  *  Y  *  Y  M  H  I  S  S  L  P  T  L  *  T  R  R  H  C  I  T  W  R  I  I  T  M  I  S  F  V  A  Q  R  *  F  *  G  S  P  M  I  *  E  H  H  R :   T  S  *  K  G  V  T  Y  Q  N  Q  Y  N  V  T  *  T  K  H  K  L  Q  K  K  R  L  D  N  T  S  D  C  *  L  A  R  H  G  R  N  *  T  K  L  I  G  *  Q  Q  T  P  S  Q  R  Y  L  L  R  V  L  *  T  *  Q  E  W  H  N  A  C  I  S  M  V  M  A  M  A  V  I  T  P  R  L  K  T  T  S  W  R  C  S  L  N  P  F  L  *  D  T  N  I  L  Q  Q  K  K  R  T  T  L  W  S  T  I  E  R  N  S  *  S  R  G  H  *  V  V  N  E  L  S  P  C  L  *  G  F  D  S  P  P  C  N  F  L  P  I  Y  R  R  G  R  G  E  E  R  R  L  S  G  C  S  M  H  S  T  Q  C  I  I  K  T  A  Y  D  L  A  V  D  S  *  L  Y  N  Q  S  Q  C  P  F  L  G  S  D  S  L  K  L  L  A  S  F  *  K  K  E  E  T  L  Q  G  S  F  I  R  T  K  G  S  L  N  V  *  Q  I  S  F  Q  S  M  V  Q  K  E  N  Y  S  S  P  T  N  N  L  F  E  F  S  V  I  F  *  F  *  I  I  V  D  D  M  S  S  H  Y  Q  *  Y  C  T  *  *  D  R  K  P  I  Y  S  S  S  S  K  C  Q  Y  P  Y  N  N  N  I  Q  K  N  G  R  *  S  F  N  K  N  R  Y  G  *  I  D  M  G  L  V  P  Y  S  *  L  L  V  Q  L </second_frame>
            <third_frame>   N  T  R  W  S  I  D  E  L  D  R  L  P  D  N  M  K  M  C  Y  Y  A  L  D  N  F  I  N  Q  L  A  D  D  A  F  E  E  Q  G  I  F  I  S  P  Y  L  R  N  S  V  T  Y  P  F  F  F  F  Y  F  E  N  K  T  N  Y  Y  H  V  C  K  S  N  S  I  G  S  I  T  L  *  I  *  I  S  V  E  R  F  V  Q  I  I  P  E  R  S  K  V  V  P  *  P  V  Y  P  K  Y  G  R  I  Y  G  Q  R  L  D  F  N  I  S  S  S  N  I  S  T  C  I  F  P  R  C  Q  P  C  K  Q  G  G  I  A  L  L  G  E  *  L  P  *  Y  H  S  L  L  S  V  N  F  E  A  R  Q  *  F  R  N  I  I   : G  R  V  E  K  G  *  R  T  K  I  N  T  M  L  H  E  R  N  T  S  F  R  R  R  G  *  T  I  H  Q  T  A  D  *  P  D  M  E  E  I  E  R  S  S  L  A  S  S  R  P  L  P  K  D  I  C  Y  V  C  Y  E  P  S  K  N  G  T  M  H  V  S  A  W  *  W  P  W  R  *  *  L  H  D  *  K  P  H  H  G  V  A  L  *  I  R  S  S  R  T  Q  T  F  F  S  R  K  R  G  P  L  Y  G  Q  L  *  R  E  I  H  D  L  G  V  I  E  L  *  M  N  F  H  L  V  C  K  V  L  I  P  H  P  A  I  S  S  P  F  I  E  G  A  G  G  K  R  E  G  S  V  G  A  V  C  I  V  H  N  A  L  S  K  L  H  M  I  W  Q  L  I  H  S  Y  I  I  N  H  S  A  L  F  W  D  L  I  A  S  S  Y  S  P  L  S  E  R  K  K  K  L  Y  K  V  P  L  S  E  L  R  E  V  *  T  S  D  R  S  H  F  R  V  W  S  R  R  K  I  T  A  R  Q  Q  I  T  F  L  N  F  Q  S  Y  S  N  F  E  S  *  W  T  I  C  L  P  T  I  N  N  I  V  R  N  R  I  G  N  L  S  I  H  Q  V  Q  S  V  N  I  H  T  T  I  T  S  K  K  M  D  D  D  P  L  I  R  T  D  M  D  E  S  I  W  D  L  C  H  I  L  D  Y  *  C  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94452" stop="94733"/>
                    <exon start="94815" stop="95180"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVLHCEFKFQWRDLCKSYLREAKWYHSQYIPSMEEYMDNAWISISAPVILVHAYFLVANPVNKEALHYLENNYHDIIRCSALILRLANDLGTSSDELKRGDVPKSIQCYMNETQASEEEARQYIRLLISQTWKKLNEAHWLAADPFPKIFVTCAMNLARMAQCMYQHGDGHGGNNSTTKNHIMALLFESVPLGHKHSSAEKEDHSMVNYREKFMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95198" stop="95476"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNFHLVCKVLIPHPAISSPFIEGAGGKREGSVGAVCIVHNALSKLHMIWQLIHSYIINHSALFWDLIASSYSPLSERKKKLYKVPLSELREV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94229" stop="94468"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTRWSIDELDRLPDNMKMCYYALDNFINQLADDAFEEQGIFISPYLRNSVTYPFFFFYFENKTNYYHVCKSNSIGSITL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="99291" PGL_stop="95415"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99291" e_stop="99153"/>
            <exon e_start="98321" e_stop="98150"/>
            <exon e_start="96245" e_stop="96129"/>
            <exon e_start="95993" e_stop="95537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.211" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99291" e_stop="99153" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98321" e_stop="98150" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.211">
            <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96245" e_stop="96129" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="95993" e_stop="95537" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99291" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99288" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99283" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99279" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99279" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99279" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99276" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99273" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99268" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99153"/>
              <exon start="98321" stop="98150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99207" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98319" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98269" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95879" stop="95555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95843" stop="95581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG : TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG : GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG : GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAGGTTAT</gDNA_template>
            <first_frame> Q  G  K  R  G  R  G  K  E  R  W  E  T  K  R  *  R  M  K  Q  W  R  *  W  D  C  S  K  F  F  L  V  S  S  S  S  I  L  I  I  P  F  G  P  F  I   : V  N  A  A  P  K  M  R  S  H  R  C  I  L  R  P  K  V  S  C  M  P  S  K  T  K  E  *  M  L  L  L  P  Q  D  R  Q  L  Q  I  *  Q  M  L  S  F  K  N  W  R  *  N  Q  C  L  *  P  R :   R  Y  S  P  V  G  H  T  R  R  N  T  F  R  K  S  T  E  R  L  R  C  P  T  M  R  C  C  F  L  M  M  K  I  G  T  Y  R  R :   F  Q  K  W  V  S  Q  V  Y  W  W  A  K  G  *  I  *  G  L  *  G  K  D  S  P  S  L  L  R  I  L  L  Q  L  K  R  T  K  N  N  G  A  N  S  Q  K  N  Q  V  H  P  K  V  M  H  N  D  D  L  A  V  P  S  T  Q  I  K  V  I  I  G  T  S  V  A  L  V  V  K  N  M  A  Q  V  P  Y  R  F  I  H  I  C  S  Y  *  R  I  I  V  H  F  F  G  C  Y  C  C  M  D  I  D  T  L  N  L  M  N  R  *  V  S  Y  P  I  T  Y  N  I  I  D  S  G  K  T  Y  R  P  L  *  F  K  I  R  I  *  L  K  I  Q  K  G  Y </first_frame>
            <second_frame>  R  E  S  V  D  A  V  K  R  D  G  R  R  K  G  E  E  *  S  N  G  D  N  G  I  V  P  S  S  S  S  S  R  R  L  R  S  *  L  Y  P  L  A  L  L  L  :  *  M  P  L  Q  K  *  E  A  I  D  V  S  S  G  Q  R  Y  L  A  C  L  Q  R  Q  R  S  E  C  C  Y  C  L  K  I  A  N  S  R  Y  S  K  C  F  P  S  K  T  G  D  K  I  N  V  C  S  P   : G  D  I  L  Q  L  D  T  Q  D  G  T  L  S  E  N  Q  P  K  D  Y  G  A  L  Q  *  D  A  V  F  *  *  *  K  S  E  H  T  G   : G  F  K  N  G  C  H  K  Y  I  G  G  Q  R  G  K  F  R  G  F  E  A  R  T  L  R  V  C  *  E  F  C  F  S  *  K  E  Q  R  T  M  A  Q  I  L  K  R  T  R  F  I  Q  K  *  C  T  M  T  I  *  Q  S  P  A  H  K  *  R  *  L  L  G  H  Q  L  H  *  *  S  R  I  W  H  K  S  H  I  D  S  S  I  S  V  L  I  K  G  S  S  S  I  F  L  D  V  I  V  V  W  I  L  T  L  *  T  *  *  I  D  R  F  P  I  L  L  R  T  I  L  L  I  V  G  R  H  I  V  H  Y  D  S  K  L  E  Y  D  *  K  F  K  K  V   </second_frame>
            <third_frame>   G  K  A  W  T  R  *  R  E  M  G  D  E  K  V  K  N  E  A  M  E  I  M  G  L  F  Q  V  L  P  R  L  V  V  F  D  L  D  Y  T  L  W  P  F  Y  C :   E  C  R  S  K  N  E  K  P  S  M  Y  P  Q  A  K  G  I  L  H  A  F  K  D  K  G  V  N  V  A  I  A  S  R  S  P  T  P  D  I  A  N  A  F  L  Q  K  L  E  I  K  S  M  F  V  A  Q  :  E  I  F  S  S  W  T  H  K  T  E  H  F  Q  K  I  N  R  K  T  T  V  P  Y  N  E  M  L  F  F  D  D  E  N  R  N  I  Q  A  :  V  S  K  M  G  V  T  S  I  L  V  G  K  G  V  N  L  G  A  L  R  Q  G  L  S  E  F  V  K  N  S  A  S  V  E  K  N  K  E  Q  W  R  K  F  S  K  E  P  G  S  S  K  S  D  A  Q  *  R  F  S  S  P  Q  H  T  N  K  G  N  Y  W  D  I  S  C  T  S  S  Q  E  Y  G  T  S  P  I  S  I  H  P  Y  L  F  L  L  K  D  H  R  P  F  F  W  M  L  L  L  Y  G  Y  *  H  F  E  L  D  E  *  I  G  F  L  S  Y  Y  V  Q  Y  Y  *  *  W  E  D  I  S  S  T  M  I  Q  N  *  N  M  T  E  N  S  K  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99268" stop="99153"/>
                    <exon start="98321" stop="98150"/>
                    <exon start="96245" stop="96129"/>
                    <exon start="95993" stop="95823"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REMGDEKVKNEAMEIMGLFQVLPRLVVFDLDYTLWPFYCECRSKNEKPSMYPQAKGILHAFKDKGVNVAIASRSPTPDIANAFLQKLEIKSMFVAQEIFSSWTHKTEHFQKINRKTTVPYNEMLFFDDENRNIQAVSKMGVTSILVGKGVNLGALRQGLSEFVKNSASVEKNKEQWRKFSKEPGSSKSDAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99291" e_stop="99153"/>
            <exon e_start="98321" e_stop="98150"/>
            <exon e_start="96245" e_stop="96129"/>
            <exon e_start="95993" e_stop="95614"/>
            <exon e_start="95420" e_stop="95415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.211" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.904" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99291" e_stop="99153" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98321" e_stop="98150" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.211">
            <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96245" e_stop="96129" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95993" e_stop="95614" e_length="380"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.904">
            <gDNA_intron_boundary i_start="95613" i_stop="95421" i_length="193"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="95420" e_stop="95415" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99291" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99288" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99283" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99279" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99279" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99279" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99276" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99273" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99268" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99153"/>
              <exon start="98321" stop="98150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99207" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96167" stop="96129"/>
              <exon start="95993" stop="95614"/>
              <exon start="95420" stop="95415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96166" stop="96129"/>
              <exon start="95993" stop="95614"/>
              <exon start="95420" stop="95415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96166" stop="96129"/>
              <exon start="95993" stop="95614"/>
              <exon start="95420" stop="95415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95978" stop="95614"/>
              <exon start="95420" stop="95415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG : TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG : GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG : GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACA : AAAGAG</gDNA_template>
            <first_frame> Q  G  K  R  G  R  G  K  E  R  W  E  T  K  R  *  R  M  K  Q  W  R  *  W  D  C  S  K  F  F  L  V  S  S  S  S  I  L  I  I  P  F  G  P  F  I   : V  N  A  A  P  K  M  R  S  H  R  C  I  L  R  P  K  V  S  C  M  P  S  K  T  K  E  *  M  L  L  L  P  Q  D  R  Q  L  Q  I  *  Q  M  L  S  F  K  N  W  R  *  N  Q  C  L  *  P  R :   R  Y  S  P  V  G  H  T  R  R  N  T  F  R  K  S  T  E  R  L  R  C  P  T  M  R  C  C  F  L  M  M  K  I  G  T  Y  R  R :   F  Q  K  W  V  S  Q  V  Y  W  W  A  K  G  *  I  *  G  L  *  G  K  D  S  P  S  L  L  R  I  L  L  Q  L  K  R  T  K  N  N  G  A  N  S  Q  K  N  Q  V  H  P  K  V  M  H  N  D  D  L  A  V  P  S  T  Q  I  K  V  I  I  G  T  S  V  A  L  V  V  K  N  M  A  Q  V  P  Y  R  F  I  H  I  C  S  Y  *  R  I  I  V  H  F  F  G  C  Y  C  C  M  D  I  D  T  L  N  L  M  N  R  *  V  S  Y  P  I  T  Y   : K  R  </first_frame>
            <second_frame>  R  E  S  V  D  A  V  K  R  D  G  R  R  K  G  E  E  *  S  N  G  D  N  G  I  V  P  S  S  S  S  S  R  R  L  R  S  *  L  Y  P  L  A  L  L  L  :  *  M  P  L  Q  K  *  E  A  I  D  V  S  S  G  Q  R  Y  L  A  C  L  Q  R  Q  R  S  E  C  C  Y  C  L  K  I  A  N  S  R  Y  S  K  C  F  P  S  K  T  G  D  K  I  N  V  C  S  P   : G  D  I  L  Q  L  D  T  Q  D  G  T  L  S  E  N  Q  P  K  D  Y  G  A  L  Q  *  D  A  V  F  *  *  *  K  S  E  H  T  G   : G  F  K  N  G  C  H  K  Y  I  G  G  Q  R  G  K  F  R  G  F  E  A  R  T  L  R  V  C  *  E  F  C  F  S  *  K  E  Q  R  T  M  A  Q  I  L  K  R  T  R  F  I  Q  K  *  C  T  M  T  I  *  Q  S  P  A  H  K  *  R  *  L  L  G  H  Q  L  H  *  *  S  R  I  W  H  K  S  H  I  D  S  S  I  S  V  L  I  K  G  S  S  S  I  F  L  D  V  I  V  V  W  I  L  T  L  *  T  *  *  I  D  R  F  P  I  L  L  R  T  :  K  E </second_frame>
            <third_frame>   G  K  A  W  T  R  *  R  E  M  G  D  E  K  V  K  N  E  A  M  E  I  M  G  L  F  Q  V  L  P  R  L  V  V  F  D  L  D  Y  T  L  W  P  F  Y  C :   E  C  R  S  K  N  E  K  P  S  M  Y  P  Q  A  K  G  I  L  H  A  F  K  D  K  G  V  N  V  A  I  A  S  R  S  P  T  P  D  I  A  N  A  F  L  Q  K  L  E  I  K  S  M  F  V  A  Q  :  E  I  F  S  S  W  T  H  K  T  E  H  F  Q  K  I  N  R  K  T  T  V  P  Y  N  E  M  L  F  F  D  D  E  N  R  N  I  Q  A  :  V  S  K  M  G  V  T  S  I  L  V  G  K  G  V  N  L  G  A  L  R  Q  G  L  S  E  F  V  K  N  S  A  S  V  E  K  N  K  E  Q  W  R  K  F  S  K  E  P  G  S  S  K  S  D  A  Q  *  R  F  S  S  P  Q  H  T  N  K  G  N  Y  W  D  I  S  C  T  S  S  Q  E  Y  G  T  S  P  I  S  I  H  P  Y  L  F  L  L  K  D  H  R  P  F  F  W  M  L  L  L  Y  G  Y  *  H  F  E  L  D  E  *  I  G  F  L  S  Y  Y  V  Q :   K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99268" stop="99153"/>
                    <exon start="98321" stop="98150"/>
                    <exon start="96245" stop="96129"/>
                    <exon start="95993" stop="95823"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REMGDEKVKNEAMEIMGLFQVLPRLVVFDLDYTLWPFYCECRSKNEKPSMYPQAKGILHAFKDKGVNVAIASRSPTPDIANAFLQKLEIKSMFVAQEIFSSWTHKTEHFQKINRKTTVPYNEMLFFDDENRNIQAVSKMGVTSILVGKGVNLGALRQGLSEFVKNSASVEKNKEQWRKFSKEPGSSKSDAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="99279" e_stop="99153"/>
            <exon e_start="98321" e_stop="98150"/>
            <exon e_start="96245" e_stop="95555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.211" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99279" e_stop="99153" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98321" e_stop="98150" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.211">
            <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96245" e_stop="95555" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99279" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99267" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="95677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99153"/>
              <exon start="98321" stop="98150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95879" stop="95555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95843" stop="95581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG : TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG : GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTG</gDNA_template>
            <first_frame> G  R  G  K  E  R  W  E  T  K  R  *  R  M  K  Q  W  R  *  W  D  C  S  K  F  F  L  V  S  S  S  S  I  L  I  I  P  F  G  P  F  I   : V  N  A  A  P  K  M  R  S  H  R  C  I  L  R  P  K  V  S  C  M  P  S  K  T  K  E  *  M  L  L  L  P  Q  D  R  Q  L  Q  I  *  Q  M  L  S  F  K  N  W  R  *  N  Q  C  L  *  P  R :   R  Y  S  P  V  G  H  T  R  R  N  T  F  R  K  S  T  E  R  L  R  C  P  T  M  R  C  C  F  L  M  M  K  I  G  T  Y  R  R  *  N  H  F  L  S  I  V  S  C  I  Q  S  I  Q  L  I  T  S  L  V  G  L  D  Q  I  I  A  T  C  K  S  *  R  Y  T  *  *  A  K  A  V  S  F  R  F  Q  K  W  V  S  Q  V  Y  W  W  A  K  G  *  I  *  G  L  *  G  K  D  S  P  S  L  L  R  I  L  L  Q  L  K  R  T  K  N  N  G  A  N  S  Q  K  N  Q  V  H  P  K  V  M  H  N  D  D  L  A  V  P  S  T  Q  I  K  V  I  I  G  T  S  V  A  L  V  V  K  N  M  A  Q  V  P  Y  R  F  I  H  I  C  S  Y  *  R  I  I  V  H  F  F  G  C  Y  C  C  M  D  I  D  T  L  N  L  M  N  R  *  V  S  Y  P  I  T  Y  N  I  I  D  S  G  K  T  Y  R  P  L  *  F  K  I  R  I  *  L </first_frame>
            <second_frame>  D  A  V  K  R  D  G  R  R  K  G  E  E  *  S  N  G  D  N  G  I  V  P  S  S  S  S  S  R  R  L  R  S  *  L  Y  P  L  A  L  L  L  :  *  M  P  L  Q  K  *  E  A  I  D  V  S  S  G  Q  R  Y  L  A  C  L  Q  R  Q  R  S  E  C  C  Y  C  L  K  I  A  N  S  R  Y  S  K  C  F  P  S  K  T  G  D  K  I  N  V  C  S  P   : G  D  I  L  Q  L  D  T  Q  D  G  T  L  S  E  N  Q  P  K  D  Y  G  A  L  Q  *  D  A  V  F  *  *  *  K  S  E  H  T  G  G  K  I  T  F  C  Q  L  Y  H  A  F  S  R  F  N  *  L  H  R  S  S  V  *  I  K  *  L  L  H  A  N  P  R  D  T  H  S  K  L  K  Q  Y  L  S  G  F  K  N  G  C  H  K  Y  I  G  G  Q  R  G  K  F  R  G  F  E  A  R  T  L  R  V  C  *  E  F  C  F  S  *  K  E  Q  R  T  M  A  Q  I  L  K  R  T  R  F  I  Q  K  *  C  T  M  T  I  *  Q  S  P  A  H  K  *  R  *  L  L  G  H  Q  L  H  *  *  S  R  I  W  H  K  S  H  I  D  S  S  I  S  V  L  I  K  G  S  S  S  I  F  L  D  V  I  V  V  W  I  L  T  L  *  T  *  *  I  D  R  F  P  I  L  L  R  T  I  L  L  I  V  G  R  H  I  V  H  Y  D  S  K  L  E  Y  D   </second_frame>
            <third_frame>   T  R  *  R  E  M  G  D  E  K  V  K  N  E  A  M  E  I  M  G  L  F  Q  V  L  P  R  L  V  V  F  D  L  D  Y  T  L  W  P  F  Y  C :   E  C  R  S  K  N  E  K  P  S  M  Y  P  Q  A  K  G  I  L  H  A  F  K  D  K  G  V  N  V  A  I  A  S  R  S  P  T  P  D  I  A  N  A  F  L  Q  K  L  E  I  K  S  M  F  V  A  Q  :  E  I  F  S  S  W  T  H  K  T  E  H  F  Q  K  I  N  R  K  T  T  V  P  Y  N  E  M  L  F  F  D  D  E  N  R  N  I  Q  A  V  K  S  L  F  V  N  C  I  M  H  S  V  D  S  I  N  Y  I  A  R  R  S  R  S  N  N  C  Y  M  Q  I  L  E  I  H  I  V  S  *  S  S  I  F  Q  V  S  K  M  G  V  T  S  I  L  V  G  K  G  V  N  L  G  A  L  R  Q  G  L  S  E  F  V  K  N  S  A  S  V  E  K  N  K  E  Q  W  R  K  F  S  K  E  P  G  S  S  K  S  D  A  Q  *  R  F  S  S  P  Q  H  T  N  K  G  N  Y  W  D  I  S  C  T  S  S  Q  E  Y  G  T  S  P  I  S  I  H  P  Y  L  F  L  L  K  D  H  R  P  F  F  W  M  L  L  L  Y  G  Y  *  H  F  E  L  D  E  *  I  G  F  L  S  Y  Y  V  Q  Y  Y  *  *  W  E  D  I  S  S  T  M  I  Q  N  *  N  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99268" stop="99153"/>
                    <exon start="98321" stop="98150"/>
                    <exon start="96245" stop="96009"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REMGDEKVKNEAMEIMGLFQVLPRLVVFDLDYTLWPFYCECRSKNEKPSMYPQAKGILHAFKDKGVNVAIASRSPTPDIANAFLQKLEIKSMFVAQEIFSSWTHKTEHFQKINRKTTVPYNEMLFFDDENRNIQAVKSLFVNCIMHSVDSINYIARRSRSNNCYMQILEIHIVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95932" stop="95708"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKDSPSLLRILLQLKRTKNNGANSQKNQVHPKVMHNDDLAVPSTQIKVIIGTSVALVVKNMAQVPYRFIHICSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="99284" e_stop="99153"/>
            <exon e_start="98321" e_stop="98150"/>
            <exon e_start="96245" e_stop="96129"/>
            <exon e_start="95994" e_stop="95614"/>
            <exon e_start="95420" e_stop="95415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.211" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.904" e_score="0.992"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99284" e_stop="99153" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98321" e_stop="98150" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.211">
            <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96245" e_stop="96129" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96128" i_stop="95995" i_length="134"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="95994" e_stop="95614" e_length="381"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.904">
            <gDNA_intron_boundary i_start="95613" i_stop="95421" i_length="193"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="95420" e_stop="95415" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99284" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95994" stop="95921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99279" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99153"/>
              <exon start="98321" stop="98150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95978" stop="95614"/>
              <exon start="95420" stop="95415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG : TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG : GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG : GGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACA : AAAGAG</gDNA_template>
            <first_frame> S  V  D  A  V  K  R  D  G  R  R  K  G  E  E  *  S  N  G  D  N  G  I  V  P  S  S  S  S  S  R  R  L  R  S  *  L  Y  P  L  A  L  L  L  :  *  M  P  L  Q  K  *  E  A  I  D  V  S  S  G  Q  R  Y  L  A  C  L  Q  R  Q  R  S  E  C  C  Y  C  L  K  I  A  N  S  R  Y  S  K  C  F  P  S  K  T  G  D  K  I  N  V  C  S  P   : G  D  I  L  Q  L  D  T  Q  D  G  T  L  S  E  N  Q  P  K  D  Y  G  A  L  Q  *  D  A  V  F  *  *  *  K  S  E  H  T  G   : G  F  Q  K  W  V  S  Q  V  Y  W  W  A  K  G  *  I  *  G  L  *  G  K  D  S  P  S  L  L  R  I  L  L  Q  L  K  R  T  K  N  N  G  A  N  S  Q  K  N  Q  V  H  P  K  V  M  H  N  D  D  L  A  V  P  S  T  Q  I  K  V  I  I  G  T  S  V  A  L  V  V  K  N  M  A  Q  V  P  Y  R  F  I  H  I  C  S  Y  *  R  I  I  V  H  F  F  G  C  Y  C  C  M  D  I  D  T  L  N  L  M  N  R  *  V  S  Y  P  I  T  Y   : K  R  </first_frame>
            <second_frame>  A  W  T  R  *  R  E  M  G  D  E  K  V  K  N  E  A  M  E  I  M  G  L  F  Q  V  L  P  R  L  V  V  F  D  L  D  Y  T  L  W  P  F  Y  C :   E  C  R  S  K  N  E  K  P  S  M  Y  P  Q  A  K  G  I  L  H  A  F  K  D  K  G  V  N  V  A  I  A  S  R  S  P  T  P  D  I  A  N  A  F  L  Q  K  L  E  I  K  S  M  F  V  A  Q  :  E  I  F  S  S  W  T  H  K  T  E  H  F  Q  K  I  N  R  K  T  T  V  P  Y  N  E  M  L  F  F  D  D  E  N  R  N  I  Q  A  :  G  F  K  N  G  C  H  K  Y  I  G  G  Q  R  G  K  F  R  G  F  E  A  R  T  L  R  V  C  *  E  F  C  F  S  *  K  E  Q  R  T  M  A  Q  I  L  K  R  T  R  F  I  Q  K  *  C  T  M  T  I  *  Q  S  P  A  H  K  *  R  *  L  L  G  H  Q  L  H  *  *  S  R  I  W  H  K  S  H  I  D  S  S  I  S  V  L  I  K  G  S  S  S  I  F  L  D  V  I  V  V  W  I  L  T  L  *  T  *  *  I  D  R  F  P  I  L  L  R  T  :  K  E </second_frame>
            <third_frame>   R  G  R  G  K  E  R  W  E  T  K  R  *  R  M  K  Q  W  R  *  W  D  C  S  K  F  F  L  V  S  S  S  S  I  L  I  I  P  F  G  P  F  I   : V  N  A  A  P  K  M  R  S  H  R  C  I  L  R  P  K  V  S  C  M  P  S  K  T  K  E  *  M  L  L  L  P  Q  D  R  Q  L  Q  I  *  Q  M  L  S  F  K  N  W  R  *  N  Q  C  L  *  P  R :   R  Y  S  P  V  G  H  T  R  R  N  T  F  R  K  S  T  E  R  L  R  C  P  T  M  R  C  C  F  L  M  M  K  I  G  T  Y  R  R :   V  S  K  M  G  V  T  S  I  L  V  G  K  G  V  N  L  G  A  L  R  Q  G  L  S  E  F  V  K  N  S  A  S  V  E  K  N  K  E  Q  W  R  K  F  S  K  E  P  G  S  S  K  S  D  A  Q  *  R  F  S  S  P  Q  H  T  N  K  G  N  Y  W  D  I  S  C  T  S  S  Q  E  Y  G  T  S  P  I  S  I  H  P  Y  L  F  L  L  K  D  H  R  P  F  F  W  M  L  L  L  Y  G  Y  *  H  F  E  L  D  E  *  I  G  F  L  S  Y  Y  V  Q :   K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99268" stop="99153"/>
                    <exon start="98321" stop="98150"/>
                    <exon start="96245" stop="96129"/>
                    <exon start="95994" stop="95908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REMGDEKVKNEAMEIMGLFQVLPRLVVFDLDYTLWPFYCECRSKNEKPSMYPQAKGILHAFKDKGVNVAIASRSPTPDIANAFLQKLEIKSMFVAQEIFSSWTHKTEHFQKINRKTTVPYNEMLFFDDENRNIQAGFKNGCHKYIGGQRGKFRGFEARTLRVC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95932" stop="95708"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKDSPSLLRILLQLKRTKNNGANSQKNQVHPKVMHNDDLAVPSTQIKVIIGTSVALVVKNMAQVPYRFIHICSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="104922" PGL_stop="99811"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104922" e_stop="104579"/>
            <exon e_start="104483" e_stop="104388"/>
            <exon e_start="102899" e_stop="102859"/>
            <exon e_start="102755" e_stop="102638"/>
            <exon e_start="102097" e_stop="102017"/>
            <exon e_start="100139" e_stop="99811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="0.072" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104922" e_stop="104579" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.798">
            <gDNA_intron_boundary i_start="104578" i_stop="104484" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104483" e_stop="104388" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="104387" i_stop="102900" i_length="1488"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102899" e_stop="102859" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.835">
            <gDNA_intron_boundary i_start="102858" i_stop="102756" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102755" e_stop="102638" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.072" acc_prob="0.983">
            <gDNA_intron_boundary i_start="102637" i_stop="102098" i_length="540"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102097" e_stop="102017" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102016" i_stop="100140" i_length="1877"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="100139" e_stop="99811" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104922" stop="104579"/>
              <exon start="104483" stop="104388"/>
              <exon start="102899" stop="102859"/>
              <exon start="102755" stop="102638"/>
              <exon start="102097" stop="102017"/>
              <exon start="100139" stop="100034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104921" stop="104579"/>
              <exon start="104483" stop="104388"/>
              <exon start="102899" stop="102859"/>
              <exon start="102755" stop="102661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104888" stop="104579"/>
              <exon start="104483" stop="104388"/>
              <exon start="102899" stop="102859"/>
              <exon start="102755" stop="102638"/>
              <exon start="102097" stop="102017"/>
              <exon start="100139" stop="99901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104883" stop="104579"/>
              <exon start="104483" stop="104388"/>
              <exon start="102899" stop="102859"/>
              <exon start="102755" stop="102638"/>
              <exon start="102097" stop="102017"/>
              <exon start="100139" stop="99811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATTCAAAACCTCCTGAAATCCTCCGCCGATATTCTCATTCGCGAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGAC : GTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAG : GTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTT : TGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGAACATAGCTAGCTACTTTCTTCTTACCTGTGGTGCAATTTACATAATATCA : GGATTGTTGTGCTTTGGATTTATCAAACGTGCTCGTCAGGCAAAAGAAATATCCAGGGAGCAAGCAATTAACGATCTTCAG : GATTTGGAGCGTCGTAGAGAAGAGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCAAATCACTGTCGAAATTGAGGAGAAAACTTGGAAAGGAAAGCTCAAATGAGCGAACTTGATGTTCATGTGTTTTACCTGCCTTTTTACCTATGTGAGATTGAAAATTTTCACTAGATGTATTGCAAATATGTACAGTTACATAGACCATTTTCCTAGCAACAGATATATCGTACTAAACCAG</gDNA_template>
            <first_frame> E  I  Q  N  L  L  K  S  S  A  D  I  L  I  R  E  C  A  R  S  K  G  K  W  N  S  I  N  K  S  R  E  T  L  S  I  *  S  S  I  E  E  I  E  R  R  W  R  E  M  A  K  E  *  *  A  P  S  R  R  G  L  T  M  V  V  Q  F  H  P  I  E  S  E  P  D  P  T  P  S  W  *  L  V  E  C  S  A  S  L  L  H  L  L  L  F  S  A  L  L  L  M  S  I  L  L  S  D  P  L  S  M  D  M  T :   Y  S  M  E  F  S  G  V  M  L  *  *  L  R  L  L  W  L  L  R  R  L  N  G  D  F  S  S  S  S  G  R :   C  W  S  F  Q  L  E  G  A  C  Y  R  S   : L  L  Q  *  *  P  E  L  I  L  K  I  M  G  K  G  M  T  S  S  F  S  G  T  *  L  A  T  F  F  L  P  V  V  Q  F  T  *  Y  Q :   D  C  C  A  L  D  L  S  N  V  L  V  R  Q  K  K  Y  P  G  S  K  Q  L  T  I  F  R :   I  W  S  V  V  E  K  S  L  K  L  C  *  Y  R  R  G  L  E  K  *  S  W  H  L  W  L  W  L  E  A  L  L  I  Q  E  R  A  *  E  I  E  L  A  F  M  A  M  A  N  H  C  R  N  *  G  E  N  L  E  R  K  A  Q  M  S  E  L  D  V  H  V  F  Y  L  P  F  Y  L  C  E  I  E  N  F  H  *  M  Y  C  K  Y  V  Q  L  H  R  P  F  S  *  Q  Q  I  Y  R  T  K  P  </first_frame>
            <second_frame>  R  F  K  T  S  *  N  P  P  P  I  F  S  F  A  S  A  H  E  V  K  E  N  G  I  P  L  I  N  P  E  K  L  F  Q  F  E  V  Q  L  K  K  L  K  E  D  G  E  R  W  R  R  N  S  E  L  P  V  A  E  G  *  Q  W  S  F  N  F  T  Q  *  S  P  N  R  I  R  P  L  P  G  D  L  *  S  V  Q  L  R  Y  C  T  C  C  Y  S  L  H  C  C  *  C  L  F  C  C  P  I  L  *  A  W  I  *   : R  I  R  W  N  F  P  V  L  C  C  S  D  C  G  Y  C  G  C  C  G  D  *  M  G  I  F  H  Q  V  L  E   : G  V  G  V  F  S  W  K  G  H  A  T  D  L  :  C  C  S  D  D  Q  S  L  S  *  R  L  W  A  K  E  *  P  H  P  S  P  E  H  S  *  L  L  S  S  Y  L  W  C  N  L  H  N  I   : R  I  V  V  L  W  I  Y  Q  T  C  S  S  G  K  R  N  I  Q  G  A  S  N  *  R  S  S   : G  F  G  A  S  *  R  R  A  *  S  S  V  D  T  G  E  G  L  R  N  R  A  G  I  Y  G  Y  G  L  K  L  C  *  Y  R  R  G  L  E  K  *  S  W  H  L  W  L  W  Q  I  T  V  E  I  E  E  K  T  W  K  G  K  L  K  *  A  N  L  M  F  M  C  F  T  C  L  F  T  Y  V  R  L  K  I  F  T  R  C  I  A  N  M  Y  S  Y  I  D  H  F  P  S  N  R  Y  I  V  L  N  Q </second_frame>
            <third_frame>   D  S  K  P  P  E  I  L  R  R  Y  S  H  S  R  V  R  T  K  *  R  K  M  E  F  H  *  *  I  Q  R  N  S  F  N  L  K  F  N  *  R  N  *  K  K  M  E  R  D  G  E  G  I  V  S  S  Q  S  Q  R  V  N  N  G  R  S  I  S  P  N  R  V  R  T  G  S  D  P  F  L  V  T  C  R  V  F  S  F  V  T  A  L  V  A  I  L  C  I  V  V  N  V  Y  S  A  V  R  S  F  K  H  G  Y  D  :  V  F  D  G  I  F  R  C  Y  A  V  V  I  A  V  I  V  V  V  A  E  T  E  W  G  F  F  I  K  F  W  K  :  V  L  E  F  S  A  G  R  G  M  L  Q  I  F :   V  A  V  M  T  R  A  Y  P  E  D  Y  G  Q  R  N  D  L  I  L  L  R  N  I  A  S  Y  F  L  L  T  C  G  A  I  Y  I  I  S  :  G  L  L  C  F  G  F  I  K  R  A  R  Q  A  K  E  I  S  R  E  Q  A  I  N  D  L  Q  :  D  L  E  R  R  R  E  E  L  E  A  L  L  I  Q  E  R  A  *  E  I  E  L  A  F  M  A  M  A  *  S  S  V  D  T  G  E  G  L  R  N  R  A  G  I  Y  G  Y  G  K  S  L  S  K  L  R  R  K  L  G  K  E  S  S  N  E  R  T  *  C  S  C  V  L  P  A  F  L  P  M  *  D  *  K  F  S  L  D  V  L  Q  I  C  T  V  T  *  T  I  F  L  A  T  D  I  S  Y  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104791" stop="104579"/>
                    <exon start="104483" stop="104388"/>
                    <exon start="102899" stop="102859"/>
                    <exon start="102755" stop="102638"/>
                    <exon start="102097" stop="102017"/>
                    <exon start="100139" stop="100083"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMERDGEGIVSSQSQRVNNGRSISPNRVRTGSDPFLVTCRVFSFVTALVAILCIVVNVYSAVRSFKHGYDVFDGIFRCYAVVIAVIVVVAETEWGFFIKFWKVLEFSAGRGMLQIFVAVMTRAYPEDYGQRNDLILLRNIASYFLLTCGAIYIISGLLCFGFIKRARQAKEISREQAINDLQDLERRREELEALLIQERA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="107979" PGL_stop="108433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107979" e_stop="108433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107979" e_stop="108433" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107979" stop="108433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206651" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGTACTATTTCTTTGGATATTATTAAATCAAGAGACAACGCTGTTATTCTCTTTTTCATGGCGTCGATTACTCCCCCGCCGACATTTGATGTAAACACTCACAAATTCAACTTCTCAAACCCTAAATTCACTTCCCGATTAAAGCGTTCATCTTCGTCTTTCACTCTTTCAACCTCTCATTTACTATCTAGGGTTTCCGGTTCCGCTTTCTGTTGTCGTTGCAGGAATGGTACCGGTGATGGTGAGACTGTTGAGCCATCGCCATCTGTTTCTTCTCAGAATAGCTCATCTTCTTCTTCTTCTTGGAGATGGGATTTGGCGTTTCAAGATGCGGTCAAGAATGCGATGAAAAAGTTGGATGATTATGTGAATTGGTCAAAAGGAGTGGGACTTGATGAGAGGAAGAGTGAAATTGGTGTTGATGATCAAGAATGGGATTGGGAACGATGGAAA</gDNA_template>
            <first_frame> *  V  L  F  L  W  I  L  L  N  Q  E  T  T  L  L  F  S  F  S  W  R  R  L  L  P  R  R  H  L  M  *  T  L  T  N  S  T  S  Q  T  L  N  S  L  P  D  *  S  V  H  L  R  L  S  L  F  Q  P  L  I  Y  Y  L  G  F  P  V  P  L  S  V  V  V  A  G  M  V  P  V  M  V  R  L  L  S  H  R  H  L  F  L  L  R  I  A  H  L  L  L  L  L  G  D  G  I  W  R  F  K  M  R  S  R  M  R  *  K  S  W  M  I  M  *  I  G  Q  K  E  W  D  L  M  R  G  R  V  K  L  V  L  M  I  K  N  G  I  G  N  D  G   </first_frame>
            <second_frame>  E  Y  Y  F  F  G  Y  Y  *  I  K  R  Q  R  C  Y  S  L  F  H  G  V  D  Y  S  P  A  D  I  *  C  K  H  S  Q  I  Q  L  L  K  P  *  I  H  F  P  I  K  A  F  I  F  V  F  H  S  F  N  L  S  F  T  I  *  G  F  R  F  R  F  L  L  S  L  Q  E  W  Y  R  *  W  *  D  C  *  A  I  A  I  C  F  F  S  E  *  L  I  F  F  F  F  L  E  M  G  F  G  V  S  R  C  G  Q  E  C  D  E  K  V  G  *  L  C  E  L  V  K  R  S  G  T  *  *  E  E  E  *  N  W  C  *  *  S  R  M  G  L  G  T  M  E  </second_frame>
            <third_frame>   S  T  I  S  L  D  I  I  K  S  R  D  N  A  V  I  L  F  F  M  A  S  I  T  P  P  P  T  F  D  V  N  T  H  K  F  N  F  S  N  P  K  F  T  S  R  L  K  R  S  S  S  S  F  T  L  S  T  S  H  L  L  S  R  V  S  G  S  A  F  C  C  R  C  R  N  G  T  G  D  G  E  T  V  E  P  S  P  S  V  S  S  Q  N  S  S  S  S  S  S  S  W  R  W  D  L  A  F  Q  D  A  V  K  N  A  M  K  K  L  D  D  Y  V  N  W  S  K  G  V  G  L  D  E  R  K  S  E  I  G  V  D  D  Q  E  W  D  W  E  R  W  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107981" stop="108433"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STISLDIIKSRDNAVILFFMASITPPPTFDVNTHKFNFSNPKFTSRLKRSSSSFTLSTSHLLSRVSGSAFCCRCRNGTGDGETVEPSPSVSSQNSSSSSSSWRWDLAFQDAVKNAMKKLDDYVNWSKGVGLDERKSEIGVDDQEWDWERWK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="113376" PGL_stop="114923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113376" e_stop="114076"/>
            <exon e_start="114154" e_stop="114277"/>
            <exon e_start="114438" e_stop="114607"/>
            <exon e_start="114917" e_stop="114923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.971"/>
          <exon-only e_score="0.429"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113376" e_stop="114076" e_length="701"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="114077" i_stop="114153" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114154" e_stop="114277" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.774">
            <gDNA_intron_boundary i_start="114278" i_stop="114437" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="114438" e_stop="114607" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114608" i_stop="114916" i_length="309"/>
          </intron>
          <exon e_serial="4" e_score="0.429">
            <gDNA_exon_boundary e_start="114917" e_stop="114923" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113376" stop="114030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113695" stop="114076"/>
              <exon start="114154" stop="114248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113746" stop="114076"/>
              <exon start="114154" stop="114277"/>
              <exon start="114438" stop="114503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113746" stop="114076"/>
              <exon start="114154" stop="114277"/>
              <exon start="114438" stop="114502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113901" stop="114076"/>
              <exon start="114154" stop="114277"/>
              <exon start="114438" stop="114607"/>
              <exon start="114917" stop="114923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316626" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTACTTGAAGAGAAAGCCAGTTCAGCAAGATTTACCTATTTCTTCTTCAAAGCTGCCCGGTGCTTCCAGTAACTTGGACACTGTTGGTCCCACTGAAAACAAAAGTGATATGTTTGATAAGATCTCAGATGCTGAGGAAGATGGCGAAGACAGGGAAGACGATTTTGGCTTTCAGAATGCATTGAAAGACATGATTCCAGGGGTACAGGTCAAGGTTTTGAAAGTGACAGCTCCAGGGAAGGTAGATAGAGATCTAATATCAAAGGTCATTGAGCAAATAATGGATGAGGAAGATGAGGATGAAGAGAAGGACTATGATTTGGACAGTGTGGATGACGAAGATGAAATTAAGGTGGAAAGAGATGGAGAGCAGAATGTGATTGAATTGGATACAGACAATGGGGTTAGTGATGGTGAAGAGCAGAGCCAAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCGAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAG : GTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAGGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGAGATTTCAACATCTCCAGACCCACTAAATG : GATTATATATTGGTGCTCATGGTCTGTACACTTCAGAAGTCATTCACTTTAGACGAAGATTTGGTCAGTGGAAAGAAGACGGTAGCCCTAAGGAGTCTTCACGCTTAGAATTTTACGAGTATGTTGAAGCGGTAAAATTAACTGGAGACTCTTATGTGCCAGCTGGTCAG : AGAGGGG</gDNA_template>
            <first_frame> F  T  *  R  E  S  Q  F  S  K  I  Y  L  F  L  L  Q  S  C  P  V  L  P  V  T  W  T  L  L  V  P  L  K  T  K  V  I  C  L  I  R  S  Q  M  L  R  K  M  A  K  T  G  K  T  I  L  A  F  R  M  H  *  K  T  *  F  Q  G  Y  R  S  R  F  *  K  *  Q  L  Q  G  R  *  I  E  I  *  Y  Q  R  S  L  S  K  *  W  M  R  K  M  R  M  K  R  R  T  M  I  W  T  V  W  M  T  K  M  K  L  R  W  K  E  M  E  S  R  M  *  L  N  W  I  Q  T  M  G  L  V  M  V  K  S  R  A  K  L  Q  L  G  W  L  L  V  V  S  C  K  I  P  Q  M  V  L  I  I  K  I  C  F  E  Y  R  Q  G  *  R  R  R  V  T  C  H  L  L  S  L  *  R  K  M  R  T  K  A  I  S  L  A  V  D  N  L  P  Q  I  K  R  L  G  F  K  V  N  V  A  W  I  M  *  W  L  I  L  Q  S  S  W  A  R  G  K  Y  L  *  R :   S  L  K  I  W  E  S  *  S  A  S  L  L  L  R  H  E  I  V  S  H  Y  Q  S  Q  P  P  L  T  A  L  R  F  Q  H  L  Q  T  H  *  M  :  D  Y  I  L  V  L  M  V  C  T  L  Q  K  S  F  T  L  D  E  D  L  V  S  G  K  K  T  V  A  L  R  S  L  H  A  *  N  F  T  S  M  L  K  R  *  N  *  L  E  T  L  M  C  Q  L  V  R :   E  G </first_frame>
            <second_frame>  L  L  E  E  K  A  S  S  A  R  F  T  Y  F  F  F  K  A  A  R  C  F  Q  *  L  G  H  C  W  S  H  *  K  Q  K  *  Y  V  *  *  D  L  R  C  *  G  R  W  R  R  Q  G  R  R  F  W  L  S  E  C  I  E  R  H  D  S  R  G  T  G  Q  G  F  E  S  D  S  S  R  E  G  R  *  R  S  N  I  K  G  H  *  A  N  N  G  *  G  R  *  G  *  R  E  G  L  *  F  G  Q  C  G  *  R  R  *  N  *  G  G  K  R  W  R  A  E  C  D  *  I  G  Y  R  Q  W  G  *  *  W  *  R  A  E  P  N  C  S  *  G  G  C  W  W  S  H  A  K  F  L  K  W  C  S  S  *  R  S  A  S  S  T  G  K  A  R  E  E  G  S  P  V  I  Y  F  H  Y  R  G  R  *  E  Q  K  Q  F  L  W  Q  W  T  I  S  P  K  *  K  G  *  A  S  R  S  T  *  L  G  S  C  D  G  *  S  C  K  V  H  G  Q  G  E  N  T  Y  E   : G  P  *  R  Y  G  R  V  D  Q  P  H  S  Y  S  G  T  K  S  S  A  I  I  K  V  N  H  L  *  P  H  *  D  F  N  I  S  R  P  T  K  W :   I  I  Y  W  C  S  W  S  V  H  F  R  S  H  S  L  *  T  K  I  W  S  V  E  R  R  R  *  P  *  G  V  F  T  L  R  I  L  R  V  C  *  S  G  K  I  N  W  R  L  L  C  A  S  W  S   : E  R   </second_frame>
            <third_frame>   Y  L  K  R  K  P  V  Q  Q  D  L  P  I  S  S  S  K  L  P  G  A  S  S  N  L  D  T  V  G  P  T  E  N  K  S  D  M  F  D  K  I  S  D  A  E  E  D  G  E  D  R  E  D  D  F  G  F  Q  N  A  L  K  D  M  I  P  G  V  Q  V  K  V  L  K  V  T  A  P  G  K  V  D  R  D  L  I  S  K  V  I  E  Q  I  M  D  E  E  D  E  D  E  E  K  D  Y  D  L  D  S  V  D  D  E  D  E  I  K  V  E  R  D  G  E  Q  N  V  I  E  L  D  T  D  N  G  V  S  D  G  E  E  Q  S  Q  I  A  V  R  V  V  V  G  G  L  M  Q  N  S  S  N  G  A  H  H  K  D  L  L  R  V  P  A  R  L  E  K  K  G  H  L  S  F  T  F  T  I  E  E  D  E  N  K  S  N  F  S  G  S  G  Q  S  P  P  N  K  K  A  R  L  Q  G  Q  R  S  L  D  H  V  M  V  D  L  A  K  F  M  G  K  G  K  I  P  M  K  :  V  L  K  D  M  G  E  L  I  S  L  T  L  T  Q  A  R  N  R  Q  P  L  S  K  S  T  T  F  N  R  I  E  I  S  T  S  P  D  P  L  N   : G  L  Y  I  G  A  H  G  L  Y  T  S  E  V  I  H  F  R  R  R  F  G  Q  W  K  E  D  G  S  P  K  E  S  S  R  L  E  F  Y  E  Y  V  E  A  V  K  L  T  G  D  S  Y  V  P  A  G  Q  :  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113378" stop="114076"/>
                    <exon start="114154" stop="114277"/>
                    <exon start="114438" stop="114607"/>
                    <exon start="114917" stop="114922"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLKRKPVQQDLPISSSKLPGASSNLDTVGPTENKSDMFDKISDAEEDGEDREDDFGFQNALKDMIPGVQVKVLKVTAPGKVDRDLISKVIEQIMDEEDEDEEKDYDLDSVDDEDEIKVERDGEQNVIELDTDNGVSDGEEQSQIAVRVVVGGLMQNSSNGAHHKDLLRVPARLEKKGHLSFTFTIEEDENKSNFSGSGQSPPNKKARLQGQRSLDHVMVDLAKFMGKGKIPMKVLKDMGELISLTLTQARNRQPLSKSTTFNRIEISTSPDPLNGLYIGAHGLYTSEVIHFRRRFGQWKEDGSPKESSRLEFYEYVEAVKLTGDSYVPAGQRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="115060" PGL_stop="115585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115060" e_stop="115585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="115060" e_stop="115585" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115060" stop="115493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115189" stop="115585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115241" stop="115476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAAAATTAAAAATATTTAACTGCATATTTTATCCAAAATCTTAATAGCAATAACACATATTAGCAAATATTCAATTCAAAAACTAATAGTAGATACTAAAATGTCTAAAACTTTAATGACCAAACAATTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTCTTTCTTCAAAATTATCCAACCCTTGAGTGTCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCACCATTGATTATTAAATTCAATTAATTCGCTGTTTAGGAATATTGAAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTAAATTAACTGCCTATAATTAAAAAAAGTAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAAAAAAAAAACTGAAGAAGAAGAACAGAAAAAAATTGTTGAAGAAGAAGAGAGAAAACGACATACCTGGAGAACAGAGAGTCGCGAGGGAAAAGAATCGTGAGCCGGCGGCCTG</gDNA_template>
            <first_frame> P  K  I  K  N  I  *  L  H  I  L  S  K  I  L  I  A  I  T  H  I  S  K  Y  S  I  Q  K  L  I  V  D  T  K  M  S  K  T  L  M  T  K  Q  F  K  I  Q  *  T  K  T  L  K  V  Y  S  F  F  K  I  I  Q  P  L  S  V  I  I  P  S  N  V  P  L  L  L  A  T  T  I  D  Y  *  I  Q  L  I  R  C  L  G  I  L  K  *  I  I  R  K  M  E  R  F  F  F  K  L  T  A  Y  N  *  K  K  *  I  T  Q  S  S  K  Q  L  S  T  A  Y  S  L  A  P  K  K  H  N  *  K  K  K  K  N  *  R  R  R  T  E  K  N  C  *  R  R  R  E  K  T  T  Y  L  E  N  R  E  S  R  G  K  R  I  V  S  R  R  P  </first_frame>
            <second_frame>  Q  K  L  K  I  F  N  C  I  F  Y  P  K  S  *  *  Q  *  H  I  L  A  N  I  Q  F  K  N  *  *  *  I  L  K  C  L  K  L  *  *  P  N  N  S  K  Y  N  K  P  K  L  *  K  S  I  L  S  S  K  L  S  N  P  *  V  S  *  F  H  P  M  S  L  F  C  *  Q  P  P  L  I  I  K  F  N  *  F  A  V  *  E  Y  *  N  K  *  L  G  K  W  K  D  F  F  L  N  *  L  P  I  I  K  K  S  K  L  H  K  A  V  S  N  *  A  L  L  T  A  L  H  Q  K  N  T  T  E  K  K  K  K  T  E  E  E  E  Q  K  K  I  V  E  E  E  E  R  K  R  H  T  W  R  T  E  S  R  E  G  K  E  S  *  A  G  G  L </second_frame>
            <third_frame>   K  N  *  K  Y  L  T  A  Y  F  I  Q  N  L  N  S  N  N  T  Y  *  Q  I  F  N  S  K  T  N  S  R  Y  *  N  V  *  N  F  N  D  Q  T  I  Q  N  T  I  N  Q  N  F  K  S  L  F  F  L  Q  N  Y  P  T  L  E  C  H  N  S  I  Q  C  P  S  F  A  S  N  H  H  *  L  L  N  S  I  N  S  L  F  R  N  I  E  I  N  N  *  E  N  G  K  I  F  F  *  I  N  C  L  *  L  K  K  V  N  Y  T  K  Q  *  A  T  K  H  C  L  Q  P  C  T  K  K  T  Q  L  K  K  K  K  K  L  K  K  K  N  R  K  K  L  L  K  K  K  R  E  N  D  I  P  G  E  Q  R  V  A  R  E  K  N  R  E  P  A  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0245N21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="115977" PGL_stop="117384"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115977" e_stop="116051"/>
            <exon e_start="116197" e_stop="116289"/>
            <exon e_start="116396" e_stop="116542"/>
            <exon e_start="116846" e_stop="117193"/>
            <exon e_start="117373" e_stop="117384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.592" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115977" e_stop="116051" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116052" i_stop="116196" i_length="145"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116197" e_stop="116289" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="116290" i_stop="116395" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116396" e_stop="116542" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.934" acc_prob="0.987">
            <gDNA_intron_boundary i_start="116543" i_stop="116845" i_length="303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116846" e_stop="117193" e_length="348"/>
          </exon>
          <intron i_serial="4" don_prob="0.763" acc_prob="0.592">
            <gDNA_intron_boundary i_start="117194" i_stop="117372" i_length="179"/>
          </intron>
          <exon e_serial="5" e_score="0.750">
            <gDNA_exon_boundary e_start="117373" e_stop="117384" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115977" stop="116051"/>
              <exon start="116197" stop="116289"/>
              <exon start="116396" stop="116542"/>
              <exon start="116846" stop="117193"/>
              <exon start="117373" stop="117384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249307" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGCATTCCGTGCAAGAATTGGAAAAAAGTATCAACTTCCACATAAAGGAATTATTCCAGAAGAATTTGGTGTG : ATTGCTCGTTATAGGGGACAAGGAAGGCTGGCAGAGCCTGGTTTCCGGAACCCCAGATGGGTTGATGGTGAACTGGTTATCCTAGATGGAAAG : TACATTAAAGGAGGACCCGTTGTGGGTTTTGTCTACTGGGATCCTGAATATCATTTCTTAGTATTCTTCCATCGGCTTAGGCTGCAGGAGTGAACATCTCTGTAGATACAATTTTTGGCTGTTTGTTCCTGGTTCAGTTCTTTGCAG : TCAACATGATATCTAGTACCACGAACCTTGAGCTGAAGAGAAGACTCAAGATTTCGTTTGAATATGGAGTCCTTGGCAACTGACTGTTTTAGTGGCCAGCATAAAACCTTTTGCATTATATGGAACTAACAGCCATTTTTGAGTTGATAGCCCCCAATATCTCTGGTATAGCAAATGGTCGAGGCCTACTAGCATTTTCTTAGGGCACTGAGCTTGTACATATGCTCTTTATTTGTTTTTTTTTCAGCTCTTGTATTATTCTTTTTTCTCCTTCAGTAAACATTGTTGTACGTTCAAAAAACTTGGAATTTATTCTCTAATAGAATCCGAAGATAGAACGGTACATTG : GCAGACAAACAA</gDNA_template>
            <first_frame> I  A  F  R  A  R  I  G  K  K  Y  Q  L  P  H  K  G  I  I  P  E  E  F  G  V  :  I  A  R  Y  R  G  Q  G  R  L  A  E  P  G  F  R  N  P  R  W  V  D  G  E  L  V  I  L  D  G  K  :  Y  I  K  G  G  P  V  V  G  F  V  Y  W  D  P  E  Y  H  F  L  V  F  F  H  R  L  R  L  Q  E  *  T  S  L  *  I  Q  F  L  A  V  C  S  W  F  S  S  L  Q  :  S  T  *  Y  L  V  P  R  T  L  S  *  R  E  D  S  R  F  R  L  N  M  E  S  L  A  T  D  C  F  S  G  Q  H  K  T  F  C  I  I  W  N  *  Q  P  F  L  S  *  *  P  P  I  S  L  V  *  Q  M  V  E  A  Y  *  H  F  L  R  A  L  S  L  Y  I  C  S  L  F  V  F  F  S  A  L  V  L  F  F  F  L  L  Q  *  T  L  L  Y  V  Q  K  T  W  N  L  F  S  N  R  I  R  R  *  N  G  T  L  :  A  D  K  Q </first_frame>
            <second_frame>  *  H  S  V  Q  E  L  E  K  S  I  N  F  H  I  K  E  L  F  Q  K  N  L  V  * :   L  L  V  I  G  D  K  E  G  W  Q  S  L  V  S  G  T  P  D  G  L  M  V  N  W  L  S  *  M  E  S :   T  L  K  E  D  P  L  W  V  L  S  T  G  I  L  N  I  I  S  *  Y  S  S  I  G  L  G  C  R  S  E  H  L  C  R  Y  N  F  W  L  F  V  P  G  S  V  L  C  S :   Q  H  D  I  *  Y  H  E  P  *  A  E  E  K  T  Q  D  F  V  *  I  W  S  P  W  Q  L  T  V  L  V  A  S  I  K  P  F  A  L  Y  G  T  N  S  H  F  *  V  D  S  P  Q  Y  L  W  Y  S  K  W  S  R  P  T  S  I  F  L  G  H  *  A  C  T  Y  A  L  Y  L  F  F  F  Q  L  L  Y  Y  S  F  F  S  F  S  K  H  C  C  T  F  K  K  L  G  I  Y  S  L  I  E  S  E  D  R  T  V  H  W :   Q  T  N   </second_frame>
            <third_frame>   S  I  P  C  K  N  W  K  K  V  S  T  S  T  *  R  N  Y  S  R  R  I  W  C   : D  C  S  L  *  G  T  R  K  A  G  R  A  W  F  P  E  P  Q  M  G  *  W  *  T  G  Y  P  R  W  K   : V  H  *  R  R  T  R  C  G  F  C  L  L  G  S  *  I  S  F  L  S  I  L  P  S  A  *  A  A  G  V  N  I  S  V  D  T  I  F  G  C  L  F  L  V  Q  F  F  A   : V  N  M  I  S  S  T  T  N  L  E  L  K  R  R  L  K  I  S  F  E  Y  G  V  L  G  N  *  L  F  *  W  P  A  *  N  L  L  H  Y  M  E  L  T  A  I  F  E  L  I  A  P  N  I  S  G  I  A  N  G  R  G  L  L  A  F  S  *  G  T  E  L  V  H  M  L  F  I  C  F  F  F  S  S  C  I  I  L  F  S  P  S  V  N  I  V  V  R  S  K  N  L  E  F  I  L  *  *  N  P  K  I  E  R  Y  I   : G  R  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115977" stop="116051"/>
                    <exon start="116197" stop="116289"/>
                    <exon start="116396" stop="116488"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAFRARIGKKYQLPHKGIIPEEFGVIARYRGQGRLAEPGFRNPRWVDGELVILDGKYIKGGPVVGFVYWDPEYHFLVFFHRLRLQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="119070" PGL_stop="117445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119070" e_stop="118907"/>
            <exon e_start="118830" e_stop="118647"/>
            <exon e_start="118325" e_stop="118192"/>
            <exon e_start="118092" e_stop="117907"/>
            <exon e_start="117818" e_stop="117445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.128" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119070" e_stop="118907" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118906" i_stop="118831" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118830" e_stop="118647" e_length="184"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118646" i_stop="118326" i_length="321"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118325" e_stop="118192" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.128">
            <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118092" e_stop="117907" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117906" i_stop="117819" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="0.954">
            <gDNA_exon_boundary e_start="117818" e_stop="117445" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119070" stop="118907"/>
              <exon start="118830" stop="118647"/>
              <exon start="118325" stop="118192"/>
              <exon start="118092" stop="117907"/>
              <exon start="117818" stop="117630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119067" stop="118907"/>
              <exon start="118830" stop="118647"/>
              <exon start="118325" stop="118192"/>
              <exon start="118092" stop="118051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119060" stop="118907"/>
              <exon start="118830" stop="118647"/>
              <exon start="118325" stop="118192"/>
              <exon start="118092" stop="117907"/>
              <exon start="117818" stop="117708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119059" stop="118907"/>
              <exon start="118830" stop="118815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119016" stop="118907"/>
              <exon start="118830" stop="118647"/>
              <exon start="118325" stop="118192"/>
              <exon start="118092" stop="117907"/>
              <exon start="117818" stop="117642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118950" stop="118907"/>
              <exon start="118830" stop="118647"/>
              <exon start="118325" stop="118192"/>
              <exon start="118092" stop="118041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118003" stop="117907"/>
              <exon start="117818" stop="117468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117757" stop="117445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTGGCAGGGAAAAACAAAGATGGTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTG : GCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTG : CACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT : TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAG : GAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTCTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTCATTTCCTTATAATAGGATAGTAGTCTATCCATAAATTTGCCAAAATAATATATTGTACTACAGTTTCAATAGATTTCGTATTGGACATAACAATTGCATCAGAAAATTGAACAGA</gDNA_template>
            <first_frame> K  I  G  R  E  K  Q  R  W  *  *  K  Q  *  I  F  *  R  M  K  F  P  *  R  R  N  Q  *  S  S  L  K  I  L  R  L  D  L  F  L  W  T  *  S  M  D  F  V  L  L  E  L  E  I  W :   H  Q  E  S  L  T  G  R  S  V  K  *  L  M  N  H  Q  G  L  L  E  R  F  V  T  R  N  C  Q  F  L  P  F  L  I  H  I  N  L  I  N  L  N  T  H  I  L  L  T  A  S  L  A  L  M  N  P  T  W  F  L  :  H  *  D  G  W  R  R  N  Q  M  L  P  S  G  A  K  I  V  M  M  A  I  L  V  P  F  R  R  M  A  L  M  Y  L  L  I  G  *  R  T  T  K  F  N  F :   C  W  W  *  G  C  A  R  I  F  V  C  W  T  L  F  A  L  H  Y  Q  L  R  T  A  D  S  S  T  L  *  R  M  *  *  F  T  L  R  D  V  P  P  L  I  F  H  S  L  W  Q  D  T  P  K  I  F  H  H  I  H  R :   S  *  C  I  M  W  D  F  I  W  P  R  E  G  V  Q  K  *  L  K  K  F  P  S  T  T  *  T  N  H  D  V  L  P  I  F  S  L  E  K  T  A  F  Y  V  L  Q  *  F  L  *  S  Q  *  Y  Y  N  M  M  C  C  F  H  *  I  N  A  R  I  G  L  P  C  L  V  N  R  C  M  L  *  M  Q  C  P  F  I  S  L  *  *  D  S  S  L  S  I  N  L  P  K  *  Y  I  V  L  Q  F  Q  *  I  S  Y  W  T  *  Q  L  H  Q  K  I  E  Q  </first_frame>
            <second_frame>  K  L  A  G  K  N  K  D  G  N  K  N  S  R  S  F  E  E  *  N  S  H  R  G  G  I  S  S  H  H  *  R  Y  *  G  W  T  C  S  C  G  H  N  Q  W  I  L  Y  C  W  S  W  K  S   : G  T  K  R  A  *  Q  A  D  Q  *  N  D  *  *  I  I  K  A  C  *  S  V  L  *  Q  E  I  A  S  S  C  L  S  *  F  T  S  T  *  *  T  *  T  P  I  S  F  S  L  H  H  W  H  *  *  I  Q  L  G  S  C :   T  K  M  G  G  G  G  T  K  C  Y  H  Q  A  Q  R  L  L  *  W  L  Y  W  F  L  S  G  G  W  L  *  C  I  C  *  L  G  E  E  Q  P  S  S  T   : F  V  G  G  R  G  V  H  G  Y  L  C  A  G  L  C  L  L  Y  I  I  S  *  E  P  R  I  P  Q  P  F  K  G  C  S  S  L  L  S  G  M  C  H  L  *  F  S  T  L  Y  G  K  I  H  Q  R  Y  F  T  T  S  T   : G  A  N  A  S  C  G  T  L  Y  G  Q  G  K  G  C  K  N  S  *  R  S  F  L  Q  Q  L  E  Q  T  M  M  Y  C  Q  S  F  L  *  K  R  L  H  F  M  Y  S  S  S  F  Y  D  H  N  N  T  T  T  *  C  A  V  S  I  R  L  T  Q  E  *  G  C  L  V  *  S  I  D  V  C  Y  E  C  S  V  H  S  F  P  Y  N  R  I  V  V  Y  P  *  I  C  Q  N  N  I  L  Y  Y  S  F  N  R  F  R  I  G  H  N  N  C  I  R  K  L  N  R </second_frame>
            <third_frame>   N  W  Q  G  K  T  K  M  V  I  K  T  V  D  L  L  K  N  E  I  P  I  E  E  E  S  V  V  I  T  E  D  I  K  A  G  L  V  L  V  D  I  I  N  G  F  C  T  V  G  A  G  N  L  :  A  P  R  E  P  N  R  Q  I  S  E  M  I  D  E  S  S  R  L  A  R  A  F  C  D  K  K  L  P  V  L  A  F  L  D  S  H  Q  P  D  K  L  E  H  P  Y  P  S  H  C  I  T  G  T  D  E  S  N  L  V  P   : A  L  R  W  V  E  E  E  P  N  V  T  I  R  R  K  D  C  Y  D  G  Y  I  G  S  F  Q  E  D  G  S  N  V  F  V  D  W  V  K  N  N  Q  V  Q  L  :  L  L  V  V  G  V  C  T  D  I  C  V  L  D  F  V  C  S  T  L  S  A  K  N  R  G  F  L  N  P  L  K  D  V  V  V  Y  S  Q  G  C  A  T  F  D  F  P  L  S  M  A  R  Y  T  K  D  I  S  P  H  P  Q  :  E  L  M  H  H  V  G  L  Y  M  A  K  G  R  G  A  K  I  A  K  E  V  S  F  N  N  L  N  K  P  *  C  I  A  N  L  F  F  R  K  D  C  I  L  C  T  P  V  V  S  M  I  T  I  I  L  Q  H  D  V  L  F  P  L  D  *  R  K  N  R  V  A  L  S  S  Q  *  M  Y  V  M  N  A  V  S  I  H  F  L  I  I  G  *  *  S  I  H  K  F  A  K  I  I  Y  C  T  T  V  S  I  D  F  V  L  D  I  T  I  A  S  E  N  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119068" stop="118907"/>
                    <exon start="118830" stop="118647"/>
                    <exon start="118325" stop="118192"/>
                    <exon start="118092" stop="117907"/>
                    <exon start="117818" stop="117726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWQGKTKMVIKTVDLLKNEIPIEEESVVITEDIKAGLVLVDIINGFCTVGAGNLAPREPNRQISEMIDESSRLARAFCDKKLPVLAFLDSHQPDKLEHPYPSHCITGTDESNLVPALRWVEEEPNVTIRRKDCYDGYIGSFQEDGSNVFVDWVKNNQVQLLLVVGVCTDICVLDFVCSTLSAKNRGFLNPLKDVVVYSQGCATFDFPLSMARYTKDISPHPQELMHHVGLYMAKGRGAKIAKEVSFNNLNKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="119067" e_stop="118907"/>
            <exon e_start="118830" e_stop="118647"/>
            <exon e_start="118325" e_stop="118192"/>
            <exon e_start="118092" e_stop="117445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.128" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119067" e_stop="118907" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118906" i_stop="118831" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118830" e_stop="118647" e_length="184"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118646" i_stop="118326" i_length="321"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118325" e_stop="118192" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.128">
            <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="118092" e_stop="117445" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119067" stop="118907"/>
              <exon start="118830" stop="118647"/>
              <exon start="118325" stop="118192"/>
              <exon start="118092" stop="118051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119059" stop="118907"/>
              <exon start="118830" stop="118815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118950" stop="118907"/>
              <exon start="118830" stop="118647"/>
              <exon start="118325" stop="118192"/>
              <exon start="118092" stop="118041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118063" stop="117560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117757" stop="117445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGGCAGGGAAAAACAAAGATGGTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTG : GCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTG : CACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT : TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAGGTAATCTATAACAAATAACAAAATTGTCGACTTCTTGATCAACTTATTCAGTGTTTAACTAGTCGTCTTGATATTTTGGATTTTGCAGGAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTCTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTCATTTCCTTATAATAGGATAGTAGTCTATCCATAAATTTGCCAAAATAATATATTGTACTACAGTTTCAATAGATTTCGTATTGGACATAACAATTGCATCAGAAAATTGAACAGA</gDNA_template>
            <first_frame> I  G  R  E  K  Q  R  W  *  *  K  Q  *  I  F  *  R  M  K  F  P  *  R  R  N  Q  *  S  S  L  K  I  L  R  L  D  L  F  L  W  T  *  S  M  D  F  V  L  L  E  L  E  I  W :   H  Q  E  S  L  T  G  R  S  V  K  *  L  M  N  H  Q  G  L  L  E  R  F  V  T  R  N  C  Q  F  L  P  F  L  I  H  I  N  L  I  N  L  N  T  H  I  L  L  T  A  S  L  A  L  M  N  P  T  W  F  L  :  H  *  D  G  W  R  R  N  Q  M  L  P  S  G  A  K  I  V  M  M  A  I  L  V  P  F  R  R  M  A  L  M  Y  L  L  I  G  *  R  T  T  K  F  N  F :   C  W  W  *  G  C  A  R  I  F  V  C  W  T  L  F  A  L  H  Y  Q  L  R  T  A  D  S  S  T  L  *  R  M  *  *  F  T  L  R  D  V  P  P  L  I  F  H  S  L  W  Q  D  T  P  K  I  F  H  H  I  H  R  *  S  I  T  N  N  K  I  V  D  F  L  I  N  L  F  S  V  *  L  V  V  L  I  F  W  I  L  Q  E  L  M  H  H  V  G  L  Y  M  A  K  G  R  G  A  K  I  A  K  E  V  S  F  N  N  L  N  K  P  *  C  I  A  N  L  F  F  R  K  D  C  I  L  C  T  P  V  V  S  M  I  T  I  I  L  Q  H  D  V  L  F  P  L  D  *  R  K  N  R  V  A  L  S  S  Q  *  M  Y  V  M  N  A  V  S  I  H  F  L  I  I  G  *  *  S  I  H  K  F  A  K  I  I  Y  C  T  T  V  S  I  D  F  V  L  D  I  T  I  A  S  E  N  *  T   </first_frame>
            <second_frame>  L  A  G  K  N  K  D  G  N  K  N  S  R  S  F  E  E  *  N  S  H  R  G  G  I  S  S  H  H  *  R  Y  *  G  W  T  C  S  C  G  H  N  Q  W  I  L  Y  C  W  S  W  K  S   : G  T  K  R  A  *  Q  A  D  Q  *  N  D  *  *  I  I  K  A  C  *  S  V  L  *  Q  E  I  A  S  S  C  L  S  *  F  T  S  T  *  *  T  *  T  P  I  S  F  S  L  H  H  W  H  *  *  I  Q  L  G  S  C :   T  K  M  G  G  G  G  T  K  C  Y  H  Q  A  Q  R  L  L  *  W  L  Y  W  F  L  S  G  G  W  L  *  C  I  C  *  L  G  E  E  Q  P  S  S  T   : F  V  G  G  R  G  V  H  G  Y  L  C  A  G  L  C  L  L  Y  I  I  S  *  E  P  R  I  P  Q  P  F  K  G  C  S  S  L  L  S  G  M  C  H  L  *  F  S  T  L  Y  G  K  I  H  Q  R  Y  F  T  T  S  T  G  N  L  *  Q  I  T  K  L  S  T  S  *  S  T  Y  S  V  F  N  *  S  S  *  Y  F  G  F  C  R  S  *  C  I  M  W  D  F  I  W  P  R  E  G  V  Q  K  *  L  K  K  F  P  S  T  T  *  T  N  H  D  V  L  P  I  F  S  L  E  K  T  A  F  Y  V  L  Q  *  F  L  *  S  Q  *  Y  Y  N  M  M  C  C  F  H  *  I  N  A  R  I  G  L  P  C  L  V  N  R  C  M  L  *  M  Q  C  P  F  I  S  L  *  *  D  S  S  L  S  I  N  L  P  K  *  Y  I  V  L  Q  F  Q  *  I  S  Y  W  T  *  Q  L  H  Q  K  I  E  Q  </second_frame>
            <third_frame>   W  Q  G  K  T  K  M  V  I  K  T  V  D  L  L  K  N  E  I  P  I  E  E  E  S  V  V  I  T  E  D  I  K  A  G  L  V  L  V  D  I  I  N  G  F  C  T  V  G  A  G  N  L  :  A  P  R  E  P  N  R  Q  I  S  E  M  I  D  E  S  S  R  L  A  R  A  F  C  D  K  K  L  P  V  L  A  F  L  D  S  H  Q  P  D  K  L  E  H  P  Y  P  S  H  C  I  T  G  T  D  E  S  N  L  V  P   : A  L  R  W  V  E  E  E  P  N  V  T  I  R  R  K  D  C  Y  D  G  Y  I  G  S  F  Q  E  D  G  S  N  V  F  V  D  W  V  K  N  N  Q  V  Q  L  :  L  L  V  V  G  V  C  T  D  I  C  V  L  D  F  V  C  S  T  L  S  A  K  N  R  G  F  L  N  P  L  K  D  V  V  V  Y  S  Q  G  C  A  T  F  D  F  P  L  S  M  A  R  Y  T  K  D  I  S  P  H  P  Q  V  I  Y  N  K  *  Q  N  C  R  L  L  D  Q  L  I  Q  C  L  T  S  R  L  D  I  L  D  F  A  G  A  N  A  S  C  G  T  L  Y  G  Q  G  K  G  C  K  N  S  *  R  S  F  L  Q  Q  L  E  Q  T  M  M  Y  C  Q  S  F  L  *  K  R  L  H  F  M  Y  S  S  S  F  Y  D  H  N  N  T  T  T  *  C  A  V  S  I  R  L  T  Q  E  *  G  C  L  V  *  S  I  D  V  C  Y  E  C  S  V  H  S  F  P  Y  N  R  I  V  V  Y  P  *  I  C  Q  N  N  I  L  Y  Y  S  F  N  R  F  R  I  G  H  N  N  C  I  R  K  L  N  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119065" stop="118907"/>
                    <exon start="118830" stop="118647"/>
                    <exon start="118325" stop="118192"/>
                    <exon start="118092" stop="117889"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WQGKTKMVIKTVDLLKNEIPIEEESVVITEDIKAGLVLVDIINGFCTVGAGNLAPREPNRQISEMIDESSRLARAFCDKKLPVLAFLDSHQPDKLEHPYPSHCITGTDESNLVPALRWVEEEPNVTIRRKDCYDGYIGSFQEDGSNVFVDWVKNNQVQLLLVVGVCTDICVLDFVCSTLSAKNRGFLNPLKDVVVYSQGCATFDFPLSMARYTKDISPHPQVIYNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="118991" e_stop="118192"/>
            <exon e_start="118092" e_stop="117907"/>
            <exon e_start="117818" e_stop="117445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.128" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118991" e_stop="118192" e_length="800"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.128">
            <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118092" e_stop="117907" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117906" i_stop="117819" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.954">
            <gDNA_exon_boundary e_start="117818" e_stop="117445" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118991" stop="118510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118582" stop="118192"/>
              <exon start="118092" stop="117907"/>
              <exon start="117818" stop="117664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118581" stop="118192"/>
              <exon start="118092" stop="117928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118003" stop="117907"/>
              <exon start="117818" stop="117468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117757" stop="117445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTGGTACTTACAATTAAACTTGTTCTTTGTTTTATTACTTAATTAACTAGTTGATTTTTTTTTTGCTTGTAAATCATAGGCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTGGTACTAATTTTACTACTAAAAATAATGGTTATTTCATCAATGGGAAATTTGTGATATAGAATATGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT : TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAG : GAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTCTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTCATTTCCTTATAATAGGATAGTAGTCTATCCATAAATTTGCCAAAATAATATATTGTACTACAGTTTCAATAGATTTCGTATTGGACATAACAATTGCATCAGAAAATTGAACAGA</gDNA_template>
            <first_frame> S  S  H  H  *  R  Y  *  G  W  T  C  S  C  G  H  N  Q  W  I  L  Y  C  W  S  W  K  S  G  T  Y  N  *  T  C  S  L  F  Y  Y  L  I  N  *  L  I  F  F  L  L  V  N  H  R  H  Q  E  S  L  T  G  R  S  V  K  *  L  M  N  H  Q  G  L  L  E  R  F  V  T  R  N  C  Q  F  L  P  F  L  I  H  I  N  L  I  N  L  N  T  H  I  L  L  T  A  S  L  A  L  M  N  P  T  W  F  L  V  L  I  L  L  L  K  I  M  V  I  S  S  M  G  N  L  *  Y  R  I  *  F  P  T  T  C  D  G  K  T  D  S  H  E  N  S  R  K  L  Y  Y  F  L  Q  *  L  S  S  L  S  I  Y  I  S  I  L  A  K  K  R  G  T  K  P  S  K  F  W  T  I  T  R  S  V  I  N  R  C  L  G  V  G  D  S  V  L  L  D  L  Y  *  L  F  D  F  V  S  S  T  L  M  M  K  L  L  Q  H  *  D  G  W  R  R  N  Q  M  L  P  S  G  A  K  I  V  M  M  A  I  L  V  P  F  R  R  M  A  L  M  Y  L  L  I  G  *  R  T  T  K  F  N  F :   C  W  W  *  G  C  A  R  I  F  V  C  W  T  L  F  A  L  H  Y  Q  L  R  T  A  D  S  S  T  L  *  R  M  *  *  F  T  L  R  D  V  P  P  L  I  F  H  S  L  W  Q  D  T  P  K  I  F  H  H  I  H  R :   S  *  C  I  M  W  D  F  I  W  P  R  E  G  V  Q  K  *  L  K  K  F  P  S  T  T  *  T  N  H  D  V  L  P  I  F  S  L  E  K  T  A  F  Y  V  L  Q  *  F  L  *  S  Q  *  Y  Y  N  M  M  C  C  F  H  *  I  N  A  R  I  G  L  P  C  L  V  N  R  C  M  L  *  M  Q  C  P  F  I  S  L  *  *  D  S  S  L  S  I  N  L  P  K  *  Y  I  V  L  Q  F  Q  *  I  S  Y  W  T  *  Q  L  H  Q  K  I  E  Q  </first_frame>
            <second_frame>  V  V  I  T  E  D  I  K  A  G  L  V  L  V  D  I  I  N  G  F  C  T  V  G  A  G  N  L  V  L  T  I  K  L  V  L  C  F  I  T  *  L  T  S  *  F  F  F  C  L  *  I  I  G  T  K  R  A  *  Q  A  D  Q  *  N  D  *  *  I  I  K  A  C  *  S  V  L  *  Q  E  I  A  S  S  C  L  S  *  F  T  S  T  *  *  T  *  T  P  I  S  F  S  L  H  H  W  H  *  *  I  Q  L  G  S  W  Y  *  F  Y  Y  *  K  *  W  L  F  H  Q  W  E  I  C  D  I  E  Y  D  F  P  P  H  V  M  E  K  Q  I  L  T  K  I  V  E  N  F  T  I  F  C  N  D  F  H  L  *  V  Y  T  Y  P  Y  *  Q  K  K  G  G  Q  N  H  Q  N  F  G  Q  L  L  D  L  *  S  I  V  A  *  E  L  G  T  L  Y  Y  S  I  C  T  D  Y  L  I  L  Y  H  L  L  *  *  *  N  C  C  S  T  K  M  G  G  G  G  T  K  C  Y  H  Q  A  Q  R  L  L  *  W  L  Y  W  F  L  S  G  G  W  L  *  C  I  C  *  L  G  E  E  Q  P  S  S  T   : F  V  G  G  R  G  V  H  G  Y  L  C  A  G  L  C  L  L  Y  I  I  S  *  E  P  R  I  P  Q  P  F  K  G  C  S  S  L  L  S  G  M  C  H  L  *  F  S  T  L  Y  G  K  I  H  Q  R  Y  F  T  T  S  T   : G  A  N  A  S  C  G  T  L  Y  G  Q  G  K  G  C  K  N  S  *  R  S  F  L  Q  Q  L  E  Q  T  M  M  Y  C  Q  S  F  L  *  K  R  L  H  F  M  Y  S  S  S  F  Y  D  H  N  N  T  T  T  *  C  A  V  S  I  R  L  T  Q  E  *  G  C  L  V  *  S  I  D  V  C  Y  E  C  S  V  H  S  F  P  Y  N  R  I  V  V  Y  P  *  I  C  Q  N  N  I  L  Y  Y  S  F  N  R  F  R  I  G  H  N  N  C  I  R  K  L  N  R </second_frame>
            <third_frame>   *  S  S  L  K  I  L  R  L  D  L  F  L  W  T  *  S  M  D  F  V  L  L  E  L  E  I  W  Y  L  Q  L  N  L  F  F  V  L  L  L  N  *  L  V  D  F  F  F  A  C  K  S  *  A  P  R  E  P  N  R  Q  I  S  E  M  I  D  E  S  S  R  L  A  R  A  F  C  D  K  K  L  P  V  L  A  F  L  D  S  H  Q  P  D  K  L  E  H  P  Y  P  S  H  C  I  T  G  T  D  E  S  N  L  V  P  G  T  N  F  T  T  K  N  N  G  Y  F  I  N  G  K  F  V  I  *  N  M  I  S  H  H  M  *  W  K  N  R  F  S  R  K  *  *  K  T  L  L  F  F  A  M  T  F  I  F  K  Y  I  H  I  H  I  S  K  K  K  G  D  K  T  I  K  I  L  D  N  Y  S  I  C  D  Q  S  L  P  R  S  W  G  L  C  I  T  R  F  V  L  I  I  *  F  C  I  I  Y  S  D  D  E  I  V  A  A  L  R  W  V  E  E  E  P  N  V  T  I  R  R  K  D  C  Y  D  G  Y  I  G  S  F  Q  E  D  G  S  N  V  F  V  D  W  V  K  N  N  Q  V  Q  L  :  L  L  V  V  G  V  C  T  D  I  C  V  L  D  F  V  C  S  T  L  S  A  K  N  R  G  F  L  N  P  L  K  D  V  V  V  Y  S  Q  G  C  A  T  F  D  F  P  L  S  M  A  R  Y  T  K  D  I  S  P  H  P  Q  :  E  L  M  H  H  V  G  L  Y  M  A  K  G  R  G  A  K  I  A  K  E  V  S  F  N  N  L  N  K  P  *  C  I  A  N  L  F  F  R  K  D  C  I  L  C  T  P  V  V  S  M  I  T  I  I  L  Q  H  D  V  L  F  P  L  D  *  R  K  N  R  V  A  L  S  S  Q  *  M  Y  V  M  N  A  V  S  I  H  F  L  I  I  G  *  *  S  I  H  K  F  A  K  I  I  Y  C  T  T  V  S  I  D  F  V  L  D  I  T  I  A  S  E  N  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118362" stop="118192"/>
                    <exon start="118092" stop="117907"/>
                    <exon start="117818" stop="117726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCIIYSDDEIVAALRWVEEEPNVTIRRKDCYDGYIGSFQEDGSNVFVDWVKNNQVQLLLVVGVCTDICVLDFVCSTLSAKNRGFLNPLKDVVVYSQGCATFDFPLSMARYTKDISPHPQELMHHVGLYMAKGRGAKIAKEVSFNNLNKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118830" stop="118588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APREPNRQISEMIDESSRLARAFCDKKLPVLAFLDSHQPDKLEHPYPSHCITGTDESNLVPGTNFTTKNNGYFINGKFVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="121883" PGL_stop="120265"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121883" e_stop="121465"/>
            <exon e_start="120907" e_stop="120511"/>
            <exon e_start="120418" e_stop="120265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121883" e_stop="121465" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.865">
            <gDNA_intron_boundary i_start="121464" i_stop="120908" i_length="557"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120907" e_stop="120511" e_length="397"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120510" i_stop="120419" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120418" e_stop="120265" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121883" stop="121465"/>
              <exon start="120907" stop="120861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121875" stop="121465"/>
              <exon start="120907" stop="120667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121848" stop="121465"/>
              <exon start="120907" stop="120732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121842" stop="121465"/>
              <exon start="120907" stop="120607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121825" stop="121465"/>
              <exon start="120907" stop="120531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120900" stop="120511"/>
              <exon start="120418" stop="120272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120893" stop="120511"/>
              <exon start="120418" stop="120265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCGACCATTTCTTCCCTAAATTTTCCACCAAGAACCAAACTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTACAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCG : AATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTTGACACATCCTAACATCAACATTCCTCCTCGAG : GGCAAATTTATTCAGTTAATGATGCTCGGTATTTTGACTGGCCTGAAGGATTAAGGCAGTATATTGATACGATAAGACAAGGGAAAGGACAACATCCTAAGAAGTACTCAGCCAGGTATATATGTTCTCTAGTGGCTGATTTTCATCGGACTCT</gDNA_template>
            <first_frame> H  R  P  F  L  P  *  I  F  H  Q  E  P  N  S  P  H  Q  T  L  Q  F  F  L  K  T  T  I  L  Y  L  F  V  L  K  I  W  L  L  L  H  F  L  E  G  *  L  T  P  G  L  I  H  Q  L  Q  L  A  V  K  M  L  Q  *  I  L  L  I  V  G  F  Q  H  *  W  S  I  W  V  K  E  G  L  M  W  V  M  T  W  C  Y  C  L  V  T  *  N  M  P  P  R  K  L  L  L  L  L  L  A  L  S  I  P  A  S  T  T  M  L  P  L  E  I  R  G  L  L  L  I  E  I  S  P  S  L  L  I  L  F  R :   M  R  L  Y  C  R  L  L  E  I  R  E  K  L  L  *  W  P  Q  K  K  M  S  V  L  C  G  *  L  M  M  A  R  L  W  L  S  W  I  L  *  M  V  P  E  I  *  M  P  Q  Y  P  L  G  R  Y  L  G  F  T  D  V  L  W  K  L  I  I  C  R  W  R  K  R  L  Y  *  T  A  F  R  V  D  Q  S  L  L  Q  Q  L  M  F  S  I  R  Q  P  Q  Y  S  V  L  A  L  V  L  E  H  M  H  S  H  W  I  I  Q  P  E  I  S  S  *  H  I  L  T  S  T  F  L  L  E  :  G  K  F  I  Q  L  M  M  L  G  I  L  T  G  L  K  D  *  G  S  I  L  I  R  *  D  K  G  K  D  N  I  L  R  S  T  Q  P  G  I  Y  V  L  *  W  L  I  F  I  G  L  </first_frame>
            <second_frame>  I  D  H  F  F  P  K  F  S  T  K  N  Q  T  L  L  T  K  P  C  N  F  S  S  K  L  Q  F  C  T  F  L  Y  *  K  Y  G  F  F  S  I  F  W  R  V  N  *  L  Q  G  *  F  T  N  C  N  W  L  *  K  C  F  S  R  F  C  *  *  W  V  F  N  T  D  G  V  Y  G  *  R  R  G  *  C  G  *  *  L  G  V  I  V  W  S  L  R  I  C  L  Q  E  N  C  C  S  C  C  L  P  F  Q  F  Q  P  Q  Q  Q  C  C  H  W  K  Y  G  D  F  F  *  *  R  *  A  Q  A  S  *  Y  C  F   : E  *  D  Y  I  V  V  S  *  K  F  G  K  S  C  C  N  G  L  R  R  R  *  V  S  C  V  D  N  *  *  W  P  V  C  G  C  H  G  S  F  R  W  F  P  K  Y  R  C  L  N  T  H  W  D  D  I  W  D  L  Q  T  S  C  G  N  *  S  F  A  G  G  G  K  G  F  T  K  L  P  S  E  W  I  K  A  C  C  S  S  L  C  S  L  F  V  S  H  N  T  L  C  *  L  W  F  W  N  T  C  I  H  I  G  S  Y  N  R  R  F  P  L  D  T  S  *  H  Q  H  S  S  S  R :   A  N  L  F  S  *  *  C  S  V  F  *  L  A  *  R  I  K  A  V  Y  *  Y  D  K  T  R  E  R  T  T  S  *  E  V  L  S  Q  V  Y  M  F  S  S  G  *  F  S  S  D  S </second_frame>
            <third_frame>   S  T  I  S  S  L  N  F  P  P  R  T  K  L  S  S  P  N  P  A  I  F  P  Q  N  Y  N  F  V  P  F  C  T  E  N  M  A  S  S  P  F  S  G  G  L  I  N  S  R  V  D  S  P  I  A  I  G  C  K  N  A  S  V  D  S  A  N  S  G  F  S  T  L  M  E  Y  M  G  K  G  G  V  D  V  G  D  D  L  V  L  L  F  G  H  L  E  Y  A  S  K  K  I  A  A  L  V  A  C  P  F  N  S  S  L  N  N  N  V  A  I  G  N  T  G  T  S  S  D  R  D  K  P  K  P  L  D  I  V  S  :  N  E  I  I  L  S  S  L  R  N  S  G  K  V  A  V  M  A  S  E  E  D  E  C  P  V  W  I  T  D  D  G  P  F  V  V  V  M  D  P  L  D  G  S  R  N  I  D  A  S  I  P  T  G  T  I  F  G  I  Y  R  R  L  V  E  I  D  H  L  P  V  E  E  K  A  L  L  N  C  L  Q  S  G  S  K  L  V  A  A  A  Y  V  L  Y  S  S  A  T  I  L  C  A  S  F  G  S  G  T  H  A  F  T  L  D  H  T  T  G  D  F  L  L  T  H  P  N  I  N  I  P  P  R   : G  Q  I  Y  S  V  N  D  A  R  Y  F  D  W  P  E  G  L  R  Q  Y  I  D  T  I  R  Q  G  K  G  Q  H  P  K  K  Y  S  A  R  Y  I  C  S  L  V  A  D  F  H  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121881" stop="121465"/>
                    <exon start="120907" stop="120511"/>
                    <exon start="120418" stop="120267"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STISSLNFPPRTKLSSPNPAIFPQNYNFVPFCTENMASSPFSGGLINSRVDSPIAIGCKNASVDSANSGFSTLMEYMGKGGVDVGDDLVLLFGHLEYASKKIAALVACPFNSSLNNNVAIGNTGTSSDRDKPKPLDIVSNEIILSSLRNSGKVAVMASEEDECPVWITDDGPFVVVMDPLDGSRNIDASIPTGTIFGIYRRLVEIDHLPVEEKALLNCLQSGSKLVAAAYVLYSSATILCASFGSGTHAFTLDHTTGDFLLTHPNINIPPRGQIYSVNDARYFDWPEGLRQYIDTIRQGKGQHPKKYSARYICSLVADFHRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="121310" e_stop="121055"/>
            <exon e_start="120907" e_stop="120511"/>
            <exon e_start="120418" e_stop="120265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.865" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="121310" e_stop="121055" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.865">
            <gDNA_intron_boundary i_start="121054" i_stop="120908" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120907" e_stop="120511" e_length="397"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120510" i_stop="120419" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120418" e_stop="120265" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121310" stop="121058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121100" stop="121055"/>
              <exon start="120907" stop="120543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120900" stop="120511"/>
              <exon start="120418" stop="120272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120893" stop="120511"/>
              <exon start="120418" stop="120265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTAGAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTAACA : AATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTTGACACATCCTAACATCAACATTCCTCCTCGAG : GGCAAATTTATTCAGTTAATGATGCTCGGTATTTTGACTGGCCTGAAGGATTAAGGCAGTATATTGATACGATAAGACAAGGGAAAGGACAACATCCTAAGAAGTACTCAGCCAGGTATATATGTTCTCTAGTGGCTGATTTTCATCGGACTCT</gDNA_template>
            <first_frame> K  P  F  N  F  Y  C  T  V  *  R  D  P  I  K  W  N  W  D  *  *  I  I  D  *  L  M  L  F  I  G  C  C  *  I  R  S  L  L  *  Y  L  V  K  L  G  L  S  C  N  S  H  L  K  S  *  F  K  E  S  R  I  V  Q  A  L  E  G  V  H  S  C  H  *  P  S  V  *  D  F  C  H  S  F  N   : K  *  D  Y  I  V  V  S  *  K  F  G  K  S  C  C  N  G  L  R  R  R  *  V  S  C  V  D  N  *  *  W  P  V  C  G  C  H  G  S  F  R  W  F  P  K  Y  R  C  L  N  T  H  W  D  D  I  W  D  L  Q  T  S  C  G  N  *  S  F  A  G  G  G  K  G  F  T  K  L  P  S  E  W  I  K  A  C  C  S  S  L  C  S  L  F  V  S  H  N  T  L  C  *  L  W  F  W  N  T  C  I  H  I  G  S  Y  N  R  R  F  P  L  D  T  S  *  H  Q  H  S  S  S  R :   A  N  L  F  S  *  *  C  S  V  F  *  L  A  *  R  I  K  A  V  Y  *  Y  D  K  T  R  E  R  T  T  S  *  E  V  L  S  Q  V  Y  M  F  S  S  G  *  F  S  S  D  S </first_frame>
            <second_frame>  N  L  L  T  S  T  A  L  Y  R  E  T  Q  *  S  G  I  G  I  D  E  L  L  I  D  *  C  Y  L  *  V  A  V  K  L  G  P  C  S  D  T  L  L  N  *  V  F  R  V  T  H  I  S  K  A  S  S  K  R  V  G  L  S  K  P  *  K  E  F  T  H  V  I  N  H  R  C  E  T  F  V  I  L  L  T  :  N  E  I  I  L  S  S  L  R  N  S  G  K  V  A  V  M  A  S  E  E  D  E  C  P  V  W  I  T  D  D  G  P  F  V  V  V  M  D  P  L  D  G  S  R  N  I  D  A  S  I  P  T  G  T  I  F  G  I  Y  R  R  L  V  E  I  D  H  L  P  V  E  E  K  A  L  L  N  C  L  Q  S  G  S  K  L  V  A  A  A  Y  V  L  Y  S  S  A  T  I  L  C  A  S  F  G  S  G  T  H  A  F  T  L  D  H  T  T  G  D  F  L  L  T  H  P  N  I  N  I  P  P  R   : G  Q  I  Y  S  V  N  D  A  R  Y  F  D  W  P  E  G  L  R  Q  Y  I  D  T  I  R  Q  G  K  G  Q  H  P  K  K  Y  S  A  R  Y  I  C  S  L  V  A  D  F  H  R  T   </second_frame>
            <third_frame>   T  F  *  L  L  L  H  C  I  E  R  P  N  K  V  E  L  G  L  M  N  Y  *  L  I  D  V  I  Y  R  L  L  L  N  *  V  L  A  L  I  P  C  *  I  R  S  F  V  *  L  T  S  Q  K  L  V  Q  R  E  *  D  C  P  S  L  R  R  S  S  L  M  S  L  T  I  G  V  R  L  L  S  F  F  *  Q :   M  R  L  Y  C  R  L  L  E  I  R  E  K  L  L  *  W  P  Q  K  K  M  S  V  L  C  G  *  L  M  M  A  R  L  W  L  S  W  I  L  *  M  V  P  E  I  *  M  P  Q  Y  P  L  G  R  Y  L  G  F  T  D  V  L  W  K  L  I  I  C  R  W  R  K  R  L  Y  *  T  A  F  R  V  D  Q  S  L  L  Q  Q  L  M  F  S  I  R  Q  P  Q  Y  S  V  L  A  L  V  L  E  H  M  H  S  H  W  I  I  Q  P  E  I  S  S  *  H  I  L  T  S  T  F  L  L  E  :  G  K  F  I  Q  L  M  M  L  G  I  L  T  G  L  K  D  *  G  S  I  L  I  R  *  D  K  G  K  D  N  I  L  R  S  T  Q  P  G  I  Y  V  L  *  W  L  I  F  I  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121111" stop="121055"/>
                    <exon start="120907" stop="120511"/>
                    <exon start="120418" stop="120267"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEFTHVINHRCETFVILLTNEIILSSLRNSGKVAVMASEEDECPVWITDDGPFVVVMDPLDGSRNIDASIPTGTIFGIYRRLVEIDHLPVEEKALLNCLQSGSKLVAAAYVLYSSATILCASFGSGTHAFTLDHTTGDFLLTHPNINIPPRGQIYSVNDARYFDWPEGLRQYIDTIRQGKGQHPKKYSARYICSLVADFHRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="125265" PGL_stop="125790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125265" e_stop="125790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125265" e_stop="125790" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125265" stop="125790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214774" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTACACTAATGCACGAAAACTCTGTTGCCGCCTCCGTCCCCAATTCCTCCACCGCCGCCGGTGCCGTTGGTGTTCCCGCCGTGGTCAACAACTCACACCTTCCACCACAACCATTAGCGAGACGTGTTGTGTTCCGACTTCTGTGCCATGCTTCACGCGTCGGTGGAGTTATCGGAAAATCAGGGTCCATTATTAGACAACTACAACAAGACACCTCCGCTAAGATTCACATTGATGTGTCCGCACCAAACGACCACAATCGACTCATTGTAGTAGTAGCCCCTGCTTCAGTAAACAAGAGGATAAGGCTACTGGGCCCCATTGGGGATAACCAGCGTAATGAAGAAATTGATGAAATAGAGGTTTCGGCTGCACAAGAAGCACTTGTTAGGGTTTTTGAGAGAGTTATAGAAGTAACAGCGGAAAATAATGGACTAGTTTTGGGTGTGGAGAATGTTGTGTCCTGTAGGTTATTAGTAAAGGGGAATCAAGTGGGGGCTTTGATGGGCAAAGGTGGAAAAGTA</gDNA_template>
            <first_frame> Y  Y  T  N  A  R  K  L  C  C  R  L  R  P  Q  F  L  H  R  R  R  C  R  W  C  S  R  R  G  Q  Q  L  T  P  S  T  T  T  I  S  E  T  C  C  V  P  T  S  V  P  C  F  T  R  R  W  S  Y  R  K  I  R  V  H  Y  *  T  T  T  T  R  H  L  R  *  D  S  H  *  C  V  R  T  K  R  P  Q  S  T  H  C  S  S  S  P  C  F  S  K  Q  E  D  K  A  T  G  P  H  W  G  *  P  A  *  *  R  N  *  *  N  R  G  F  G  C  T  R  S  T  C  *  G  F  *  E  S  Y  R  S  N  S  G  K  *  W  T  S  F  G  C  G  E  C  C  V  L  *  V  I  S  K  G  E  S  S  G  G  F  D  G  Q  R  W  K  S  </first_frame>
            <second_frame>  T  T  L  M  H  E  N  S  V  A  A  S  V  P  N  S  S  T  A  A  G  A  V  G  V  P  A  V  V  N  N  S  H  L  P  P  Q  P  L  A  R  R  V  V  F  R  L  L  C  H  A  S  R  V  G  G  V  I  G  K  S  G  S  I  I  R  Q  L  Q  Q  D  T  S  A  K  I  H  I  D  V  S  A  P  N  D  H  N  R  L  I  V  V  V  A  P  A  S  V  N  K  R  I  R  L  L  G  P  I  G  D  N  Q  R  N  E  E  I  D  E  I  E  V  S  A  A  Q  E  A  L  V  R  V  F  E  R  V  I  E  V  T  A  E  N  N  G  L  V  L  G  V  E  N  V  V  S  C  R  L  L  V  K  G  N  Q  V  G  A  L  M  G  K  G  G  K  V </second_frame>
            <third_frame>   L  H  *  C  T  K  T  L  L  P  P  P  S  P  I  P  P  P  P  P  V  P  L  V  F  P  P  W  S  T  T  H  T  F  H  H  N  H  *  R  D  V  L  C  S  D  F  C  A  M  L  H  A  S  V  E  L  S  E  N  Q  G  P  L  L  D  N  Y  N  K  T  P  P  L  R  F  T  L  M  C  P  H  Q  T  T  T  I  D  S  L  *  *  *  P  L  L  Q  *  T  R  G  *  G  Y  W  A  P  L  G  I  T  S  V  M  K  K  L  M  K  *  R  F  R  L  H  K  K  H  L  L  G  F  L  R  E  L  *  K  *  Q  R  K  I  M  D  *  F  W  V  W  R  M  L  C  P  V  G  Y  *  *  R  G  I  K  W  G  L  *  W  A  K  V  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125266" stop="125790"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTLMHENSVAASVPNSSTAAGAVGVPAVVNNSHLPPQPLARRVVFRLLCHASRVGGVIGKSGSIIRQLQQDTSAKIHIDVSAPNDHNRLIVVVAPASVNKRIRLLGPIGDNQRNEEIDEIEVSAAQEALVRVFERVIEVTAENNGLVLGVENVVSCRLLVKGNQVGALMGKGGKV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 263 chains have been computed
$ 
$ memory statistics:
$ 771624 bytes spliced alignments in total
$ 133 spliced alignments have been stored
$ 5801 bytes was the average size of a spliced alignment
$ 38384 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1599 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 297 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:42:58
-->
