<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2010-01-21 23:35:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586115" ref_strand="+" ref_description="SGN-U586115 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147852634|emb|CAN83798.1| (e_value=5e-33) hypothetical; (*ATH) ATMG00820.1 (e_value=6e-27) | Symbol: ORF170 | hypothetical protein | chrM:228573-229085 REVERSE | Aliases: ORF170; (*SWP) sp|P92520|M820_ARATH (e_value=5e-26) Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820; ">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatattaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatacgaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatgaatgacgagtttaaggctttgactgatcagaaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcagatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcattcctgttattcggcaggaaaccattctcctggtactgtcactcgtcgtgcgtaacattggctcatcaatcagttggatgtttcccatgcttttcttcatggtatgcttgatgaaactatctacatgacgcaaccaccgagctatgntgatcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="1349" stop="109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1049" g_stop="408" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-U586115" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1049" e_stop="408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCTACAACATCTCCAGTCTGATCTGTTTTGGGTCCTTCCCGGTCACCCCTGAATCACCACCGCCCGTGCCCACCCCCCAATACTTATCCCATGTTAACCCGTGGCAAAGCCGATATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTTCCCGATAGTGAACCAACAACCTACTATGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTGTGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGTGTGTACAAAATTAAACACAACGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCAATCGCCTGGTATTGTCACTCGCCATGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTAATCCCCG</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTG-CCACCCCCCAATACTCATCCCATATTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACGACCAAATACACCCC-TTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGAATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCATTCCTGTTATTCGGCAGGAAACCATTCTCCTGGTACTGTCACTCGTCGTGCGTAAC-ATTGGCTCATCAATCAGTTGGATGTTTCCCATGCTTTTCTTCATGGTATGCTTGATGAAACTATCTACATGACGCAACCACCGAGCTATGNTGATCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604205" ref_strand="+" ref_description="SGN-U604205 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aagcaatatatatatatatatatatatagtgtgatcacatttatatgtacactctctttaaaagttgacaaaaataaaacataaaatttacaatcagaataagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="13135" stop="12462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12558" g_stop="12462" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-U604205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>97</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12558" e_stop="12462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AAGCAATATATATATATATATATATATAGTGTGATCACATTTATATGTACACTCTCTTTAAAAGTTGACAAAAATAAAACATAAAATTTACAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565083" ref_strand="+" ref_description="SGN-U565083 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|87162496|gb|ABD28291.1| (e_value=6e-83) Integrase,; (*SWP) sp|P03360|POL_AVIRE (e_value=7e-16) Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol; ">
      <seq>aaaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactggcaaggtccctacatggttcataaagtactttctgggaggtgttttggccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="16248" stop="14866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15954" g_stop="15166" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-U565083" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15954" e_stop="15166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACTAATAACGGTGCAAATCTCAACAGTTATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGATAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCGAACTGGCAAGGTCCTTACATGGTTCGCAAAGTACTATCT-GGAGGTGCTTTAGTCTTG</genome_strand>
        <mrna_strand>AAAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTGGCAAGGTCCCTACATGGTTCATAAAGTACTTTCTGGGAGGTGTTTTGGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588617" ref_strand="+" ref_description="SGN-U588617 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|87162496|gb|ABD28291.1| (e_value=4e-80) Integrase,; (*SWP) sp|P03360|POL_AVIRE (e_value=4e-12) Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol; ">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttcttaagcgtatttttcctcatcaagacgagtacaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="16312" stop="14934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16012" g_stop="15234" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-U588617" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16012" e_stop="15234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGATACGGGTGACACCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACTAATAACGGTGCAAATCTCAACAGTTATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGATAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAA</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTGC-GTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588008" ref_strand="+" ref_description="SGN-U588008 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157331903|emb|CAO67662.1| (e_value=1e-41) unnamed; (*ATH) AT3G50440.1 (e_value=3e-39)  Symbol: None | similar to esterase, putative [Arabidopsis thaliana] (TAIR:At2g23620.1); similar to methyl jasmonate esterase [Solanum tuberosum] (GB:AAV87151.1); contains InterPro domain Esterase/lipase/thioesterase (InterPro:IPR000379); contains In... ; (*SWP) sp|Q9SE93|PNAE_RAUSE (e_value=1e-31) Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE; ">
      <seq>gcttttaagtagcatttatctacacaataataatatggagaaaattggaggaattaaaagttttaacatggagaaaattccaaagaagcattttatcctagttcatggattttgtcatggttcttggtgttggtacaaaattatcaatttattggaaaaatgtggtcataaagtgactgctttagaccttggtggttgtggaattaatatgaaacaattgaatgaaattgattcaatatttgattatattcaacctttgatggatcttatgatatctttgtctaaagatgaaaagattattttggttagtcatagttacggtggtctttgtatttctcttgctatggaagctttcccacacaaaatttcaacaggagtttttatctctgcttatatgcctaatcatgtggatccaccttctcttcttattcttgaggaatcatcgaagattgcagacgattttggggttcattcgcgattttcgagttgacatagtaccttcgcagttgaagaagaagaaatcgataaagaagataaattcgacattggaacttgatgattaagaagaaatcaatgaaaaagtgatatatataatgaggtaaagaagataaatatgatgaagagaaacaaaagaggagaaataatggaagaatgggagaaattagggttaaaagggggaagaagatcgttggtgggtggttcaagatccacatccgcgctttttaagagtctgcacgcgctttaaggacgtgaaatcacgttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="+" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="25579" stop="28271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25878" g_stop="26313" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26314" i_stop="27640" i_length="1327">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27641" g_stop="27971" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="767" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="+" ref_id="SGN-U588008" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25878" e_stop="26313"/>
          <exon e_start="27641" e_stop="27971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAGGAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTAGTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTTATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTGGAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATTCAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTATTTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAGCTTTCCCACACAAAATTTCAACAGGAGTTTTTATCTCTGCTTATATGCCTAATCATGTGGATCCACCTTCTCTTCTTATTCTTGAGGTAATTTTCATTATTTTGTTTCAATTTATATGATTTTTTTTCTTTTTGAGGATTTATTTATGACTACTTATGACTTTTTGTTTTTAGCTCTTCTTATTCATGAGGTAATTTTTGCAATCCATGAGTTCAATTTTCATCAAAAAGAAAAACGAAAAAAAAAAGTACTCTACCTTATCTCAATTTGTGTCATACTGTTTAGCTTTTTAAGAGTTACTTTTATTATTTTTTAATGCTCAATTTATTATGTTAGAATAAGATTGAAGTAAATTTCATGGAATAGGATTTGATCCTACTAGATCCTAATAGTAAATGATCAGATCTTGTAAGTATTTTCTTTCTCATAAACGAAATCTTCGAAAAGGATTTGATCCTACTAGATCCTAATAGTAAATGATCAGATCTTGTAAGTATTTTCTTTCTCATAAACATAATTTGCTTTCGAAGATTTTACGTAATATTATTTAATATCTTTCACTAAATATGTTATTATTATTCAATTTATTTGGATTATTGTTATTTATTATTTTATAATATATTATATTATATTATAATGTATTATTATATGGTAGATACAATGTTTGGCTAGATTGTGTTGTTTGTTATTGTTTATTAACATTTTAATTGTTTGGTTTGATCGTATCATACTGTATTATAATTTATAAATTTACTTAAATATCCTTAATTATTATAGGATAGGAGACTTGACTAGGTTTAAATAATTAAGGTAAAGAGTAAAAAGTATTTTGAAATATTATGTAAAGATATAGTTGGAAAAAGAAATTAAGTAAAGAACGCACCAAATTGATTGTTCCACAAAATATAATTTTTTATTACTATGTAATAACGAAAGTTAACAATATAGTACAATACATTTTAAATAACAATTAAAACTAATATTGTAGATATAGTAACAATGCGAAATAATATAATCAATAACAATGATCCAAACATAATATAAATATGTCACTGTTATTTAATGGCCAAATACATACGCAGGTCCCTACAGTTGTTCGCACTTTTCCCCCCAGGTATCTCAACTAACCAAGATTCTTATTAAATCCTTTAACCCCCTATAATTTGATCCTTTTAAATATTCTTGGCTGATGTGGAGCCAAATTTCAATAAATTATTTTTGACAATTATGCGCGTGAGATGAACCTTTTCCACGTGGAAATTTTGACCAATACACTCCAACCCAATTACACGTCAGTGCCACATATTTTCTAACCCGTTTCTATACGAGAAAACCCTAAGAATCTCTCCCTTTCAATGACTTTTACAGCTGAAATTTTTAGATTTTACAGTGATTTTGAGTGTTTTGTTGAAGGAATCATCGAAGATTGCAGACGATTTTGGGGTTCATTCGCGATTTTCGAGTTGACATAGTACCTTCGCAGTTGAAGAAGAAGAAATCGATAAAGAAGATAAATTCGACATTGGAACTTGATGATTAAGAAGAAATCAATGAAAAAGTGATATATATAATGAGGTAAAGAAGATAAATATGATGAAGAGAAACAAAAGAGGAGAAATAATGGAAGAATGGGAGAAATTAGGGTTAAAAGGGGGAAGAAGATCGTTGGTGGGTGGTTCAAGATCCACATCCGCGCTTTTAAAGAGTCTGCACGCGCTTAAAGGACGTGAAATCACGTTTTGCT</genome_strand>
        <mrna_strand>GCTTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAGGAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTAGTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTTATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTGGAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATTCAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTATTTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAGCTTTCCCACACAAAATTTCAACAGGAGTTTTTATCTCTGCTTATATGCCTAATCATGTGGATCCACCTTCTCTTCTTATTCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCATCGAAGATTGCAGACGATTTTGGGGTTCATTCGCGATTTTCGAGTTGACATAGTACCTTCGCAGTTGAAGAAGAAGAAATCGATAAAGAAGATAAATTCGACATTGGAACTTGATGATTAAGAAGAAATCAATGAAAAAGTGATATATATAATGAGGTAAAGAAGATAAATATGATGAAGAGAAACAAAAGAGGAGAAATAATGGAAGAATGGGAGAAATTAGGGTTAAAAGGGGGAAGAAGATCGTTGGTGGGTGGTTCAAGATCCACATCCGCGCTTTTTAAGAGTCTGCACGCGCTTTAAGGACGTGAAATCACGTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603118" ref_strand="+" ref_description="SGN-U603118 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=8e-56) copia; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-23) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>cctagagttttgtgaacattgtgtttttggaaaactacatcgcaacaagtttccaaaggccattcatagaacaaaaggcacacttgattatatccattctgattgctggggtccatgccgtgttgagtctttgggaggctgcagattttttgtgtccattattgatgactactcaaggatgacttgggtgtacatgatgaagcataaaagtgaagccttccagaagtttaaggagtggaaaattttgatggaaaatcaaacagggaagaagatcaagaggttgcgaactgataatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="+" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="49377" stop="50275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49677" g_stop="49975" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="+" ref_id="SGN-U603118" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49677" e_stop="49975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGAGTTTTGTGAACAATGTGTCTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCACAGAACAAAAGGCACACTTGATTACATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCTTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAATAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</genome_strand>
        <mrna_strand>CCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTTAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595912" ref_strand="+" ref_description="SGN-U595912 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gctaagtccatacccaacccactcgcctttctcttcttcctcgcgtgagcagacgcaaagcttacaacgcctgcgaattcagatactaccatgccatggagaggttcacgcgcgtgaacagcgagagctagtgtaacggaaagtggggaagagcaagccaatatcatgcgctcaactcatttgatatctcaacaacagagcacggcacgcgagttaatccttgacgtggcgagatgagtccacgtagagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="50825" stop="49977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50526" g_stop="50277" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-U595912" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50526" e_stop="50277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTCGATACCCAACCCACTCGCCTTTCTCTTCTTCCTCGCGTGAGCAGACGCAAAAATTAGAACGCCAGTGAATCCAGATACTAGCAAGCCATGGAGAGGTTCAGGCGCGTGAACAGCGAGAGCAAGTGTAACGGAAAGTGGGGAAGAGCAGGCCAATATCATGCCCTCAACTCATTTGAT-TCGCAACAACAGAGCAAGGCACGCGAATTAGTCCTTGACGTGGCGAGATGAGTCCACGTAGAGTC</genome_strand>
        <mrna_strand>GCTAAGTCCATACCCAACCCACTCGCCTTTCTCTTCTTCCTCGCGTGAGCAGACGCAAAGCTTACAACGCCTGCGAATTCAGATACTACCATGCCATGGAGAGGTTCACGCGCGTGAACAGCGAGAGCTAGTGTAACGGAAAGTGGGGAAGAGCAAGCCAATATCATGCGCTCAACTCATTTGATATCTCAACAACAGAGCACGGCACGCGAGTTAATCCTTGACGTGGCGAGATGAGTCCACGTAGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1049" PGL_stop="408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1049" e_stop="408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="1049" e_stop="408" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1049" stop="408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCTACAACATCTCCAGTCTGATCTGTTTTGGGTCCTTCCCGGTCACCCCTGAATCACCACCGCCCGTGCCCACCCCCCAATACTTATCCCATGTTAACCCGTGGCAAAGCCGATATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTTCCCGATAGTGAACCAACAACCTACTATGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTGTGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGTGTGTACAAAATTAAACACAACGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCAATCGCCTGGTATTGTCACTCGCCATGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTAATCCCCG</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  V  *  S  V  L  G  P  S  R  S  P  L  N  H  H  R  P  C  P  P  P  N  T  Y  P  M  L  T  R  G  K  A  D  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  C  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  C  V  Q  N  *  T  Q  R  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  Q  S  P  G  I  V  T  R  H  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  L  Q  H  L  Q  S  D  L  F  W  V  L  P  G  H  P  *  I  T  T  A  R  A  H  P  P  I  L  I  P  C  *  P  V  A  K  P  I  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  D  S  E  P  T  T  Y  Y  V  A  S  K  N  A  Y  W  R  H  A  V  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  C  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  N  R  L  V  L  S  L  A  M  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  N  P   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  Y  N  I  S  S  L  I  C  F  G  S  F  P  V  T  P  E  S  P  P  P  V  P  T  P  Q  Y  L  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  F  P  I  V  N  Q  Q  P  T  M  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  V  C  T  K  L  N  T  T  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  I  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0162G22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="892" stop="410"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVAKPISLNPKPFRLPYYQIHPFPDSEPTTYYVASKNAYWRHAVDDEFKALTDQKTWVLVPKPHGRHPVGCKCVYKIKHNADGSISRYKARLVAKGYNQEYGLDYSETFSPVIRQETNRLVLSLAMRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVNP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12558" PGL_stop="12462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12558" e_stop="12462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12558" e_stop="12462" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12558" stop="12462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> K  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0162G22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16012" PGL_stop="15166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16012" e_stop="15166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="16012" e_stop="15166" e_length="847"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16012" stop="15234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15954" stop="15166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATTTGATACGGGTGACACCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACTAATAACGGTGCAAATCTCAACAGTTATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGATAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCGAACTGGCAAGGTCCTTACATGGTTCGCAAAGTACTATCTGGAGGTGCTTTAGTCTTG</gDNA_template>
            <first_frame> R  F  D  T  G  D  T  S  R  T  *  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  A  N  R  F  *  W  T  Q  I  H  F  G  C  H  R  L  F  H  Q  V  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  S  D  M  P  I  W  S  S  R  I  H  H  H  *  *  R  C  K  S  Q  Q  L  S  D  E  R  D  M  *  T  I  *  D  Y  S  P  K  V  H  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  *  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  N  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  *  S  R  D  T  V  T  E  D  H  P  R  S  *  A  K  *  C  *  V  G  *  Q  T  D  *  S  T  S  F  D  *  *  E  E  D  G  C  C  L  P  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  R  R  V  Q  R  K  V  R  T  E  L  A  R  S  L  H  G  S  Q  S  T  I  W  R  C  F  S  L  </first_frame>
            <second_frame>  D  L  I  R  V  T  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  T  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  N  N  G  A  N  L  N  S  Y  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  R  S  T  A  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N  W  Q  G  P  Y  M  V  R  K  V  L  S  G  G  A  L  V  L </second_frame>
            <third_frame>   I  *  Y  G  *  H  L  T  N  L  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  V  L  *  S  Q  P  L  L  M  D  T  D  S  F  W  L  P  S  I  I  S  P  S  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  Y  A  D  L  E  F  Q  N  P  S  S  L  I  T  V  Q  I  S  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  F  T  E  G  P  L  L  I  A  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  I  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  Q  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  L  K  S  R  Y  R  H  *  G  S  S  K  K  L  S  *  V  M  L  S  G  L  A  N  G  L  I  N  *  L  *  L  M  R  R  G  W  L  L  F  A  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  K  T  S  T  K  E  S  S  H  R  T  G  K  V  L  T  W  F  A  K  Y  Y  L  E  V  L  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0162G22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16011" stop="15166"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVTPHELNAMSSPWPFVAWGMDVIGPIEPTASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESIITNNGANLNSYLMKEICEQFKIIHRRSTAYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEYKGKFAPNWQGPYMVRKVLSGGALVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25878" PGL_stop="27971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25878" e_stop="26313"/>
            <exon e_start="27641" e_stop="27971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.844" e_score="0.998"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="25878" e_stop="26313" e_length="436"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.844">
            <gDNA_intron_boundary i_start="26314" i_stop="27640" i_length="1327"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="27641" e_stop="27971" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25878" stop="26313"/>
              <exon start="27641" stop="27971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAGGAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTAGTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTTATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTGGAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATTCAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTATTTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAGCTTTCCCACACAAAATTTCAACAGGAGTTTTTATCTCTGCTTATATGCCTAATCATGTGGATCCACCTTCTCTTCTTATTCTTGAG : GAATCATCGAAGATTGCAGACGATTTTGGGGTTCATTCGCGATTTTCGAGTTGACATAGTACCTTCGCAGTTGAAGAAGAAGAAATCGATAAAGAAGATAAATTCGACATTGGAACTTGATGATTAAGAAGAAATCAATGAAAAAGTGATATATATAATGAGGTAAAGAAGATAAATATGATGAAGAGAAACAAAAGAGGAGAAATAATGGAAGAATGGGAGAAATTAGGGTTAAAAGGGGGAAGAAGATCGTTGGTGGGTGGTTCAAGATCCACATCCGCGCTTTTAAAGAGTCTGCACGCGCTTAAAGGACGTGAAATCACGTTTTGCT</gDNA_template>
            <first_frame> S  F  K  *  H  L  S  T  Q  *  *  Y  G  E  N  W  R  N  *  K  F  *  H  G  E  N  S  K  E  A  F  Y  P  S  S  W  I  L  S  W  F  L  V  L  V  Q  N  Y  Q  F  I  G  K  M  W  S  *  S  D  C  F  R  P  W  W  L  W  N  *  Y  E  T  I  E  *  N  *  F  N  I  *  L  Y  S  T  F  D  G  S  Y  D  I  F  V  *  R  *  K  D  Y  F  G  *  S  *  L  R  W  S  L  Y  F  S  C  Y  G  S  F  P  T  Q  N  F  N  R  S  F  Y  L  C  L  Y  A  *  S  C  G  S  T  F  S  S  Y  S  *   : G  I  I  E  D  C  R  R  F  W  G  S  F  A  I  F  E  L  T  *  Y  L  R  S  *  R  R  R  N  R  *  R  R  *  I  R  H  W  N  L  M  I  K  K  K  S  M  K  K  *  Y  I  *  *  G  K  E  D  K  Y  D  E  E  K  Q  K  R  R  N  N  G  R  M  G  E  I  R  V  K  R  G  K  K  I  V  G  G  W  F  K  I  H  I  R  A  F  K  E  S  A  R  A  *  R  T  *  N  H  V  L   </first_frame>
            <second_frame>  L  L  S  S  I  Y  L  H  N  N  N  M  E  K  I  G  G  I  K  S  F  N  M  E  K  I  P  K  K  H  F  I  L  V  H  G  F  C  H  G  S  W  C  W  Y  K  I  I  N  L  L  E  K  C  G  H  K  V  T  A  L  D  L  G  G  C  G  I  N  M  K  Q  L  N  E  I  D  S  I  F  D  Y  I  Q  P  L  M  D  L  M  I  S  L  S  K  D  E  K  I  I  L  V  S  H  S  Y  G  G  L  C  I  S  L  A  M  E  A  F  P  H  K  I  S  T  G  V  F  I  S  A  Y  M  P  N  H  V  D  P  P  S  L  L  I  L  E  :  E  S  S  K  I  A  D  D  F  G  V  H  S  R  F  S  S  *  H  S  T  F  A  V  E  E  E  E  I  D  K  E  D  K  F  D  I  G  T  *  *  L  R  R  N  Q  *  K  S  D  I  Y  N  E  V  K  K  I  N  M  M  K  R  N  K  R  G  E  I  M  E  E  W  E  K  L  G  L  K  G  G  R  R  S  L  V  G  G  S  R  S  T  S  A  L  L  K  S  L  H  A  L  K  G  R  E  I  T  F  C  </second_frame>
            <third_frame>   F  *  V  A  F  I  Y  T  I  I  I  W  R  K  L  E  E  L  K  V  L  T  W  R  K  F  Q  R  S  I  L  S  *  F  M  D  F  V  M  V  L  G  V  G  T  K  L  S  I  Y  W  K  N  V  V  I  K  *  L  L  *  T  L  V  V  V  E  L  I  *  N  N  *  M  K  L  I  Q  Y  L  I  I  F  N  L  *  W  I  L  *  Y  L  C  L  K  M  K  R  L  F  W  L  V  I  V  T  V  V  F  V  F  L  L  L  W  K  L  S  H  T  K  F  Q  Q  E  F  L  S  L  L  I  C  L  I  M  W  I  H  L  L  F  L  F  L  R :   N  H  R  R  L  Q  T  I  L  G  F  I  R  D  F  R  V  D  I  V  P  S  Q  L  K  K  K  K  S  I  K  K  I  N  S  T  L  E  L  D  D  *  E  E  I  N  E  K  V  I  Y  I  M  R  *  R  R  *  I  *  *  R  E  T  K  E  E  K  *  W  K  N  G  R  N  *  G  *  K  G  E  E  D  R  W  W  V  V  Q  D  P  H  P  R  F  *  R  V  C  T  R  L  K  D  V  K  S  R  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0162G22.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25879" stop="26313"/>
                    <exon start="27641" stop="27694"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSSIYLHNNNMEKIGGIKSFNMEKIPKKHFILVHGFCHGSWCWYKIINLLEKCGHKVTALDLGGCGINMKQLNEIDSIFDYIQPLMDLMISLSKDEKIILVSHSYGGLCISLAMEAFPHKISTGVFISAYMPNHVDPPSLLILEESSKIADDFGVHSRFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="49677" PGL_stop="49975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49677" e_stop="49975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="49677" e_stop="49975" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49677" stop="49975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAGAGTTTTGTGAACAATGTGTCTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCACAGAACAAAAGGCACACTTGATTACATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCTTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAATAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</gDNA_template>
            <first_frame> P  R  V  L  *  T  M  C  L  W  K  T  T  S  Q  Q  V  S  K  G  H  S  Q  N  K  R  H  T  *  L  H  P  F  *  L  L  G  S  M  P  C  *  V  F  G  R  L  Q  I  F  C  V  H  Y  *  *  L  L  K  D  D  L  G  V  H  D  E  A  *  K  *  S  F  P  E  V  Q  G  V  E  N  F  D  G  K  S  N  R  E  E  D  Q  E  V  A  N  *  *  W   </first_frame>
            <second_frame>  L  E  F  C  E  Q  C  V  F  G  K  L  H  R  N  K  F  P  K  A  I  H  R  T  K  G  T  L  D  Y  I  H  S  D  C  W  G  P  C  R  V  E  S  L  G  G  C  R  F  F  V  S  I  I  D  D  Y  S  R  M  T  W  V  Y  M  M  K  H  K  S  E  A  F  Q  K  F  K  E  W  K  I  L  M  E  N  Q  I  G  K  K  I  K  R  L  R  T  D  N  G  </second_frame>
            <third_frame>   *  S  F  V  N  N  V  S  L  E  N  Y  I  A  T  S  F  Q  R  P  F  T  E  Q  K  A  H  L  I  T  S  I  L  I  A  G  V  H  A  V  L  S  L  W  E  A  A  D  F  L  C  P  L  L  M  T  T  Q  G  *  L  G  C  T  *  *  S  I  K  V  K  L  S  R  S  S  R  S  G  K  F  *  W  K  I  K  *  G  R  R  S  R  G  C  E  L  I  M  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0162G22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49678" stop="49974"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEFCEQCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQIGKKIKRLRTDNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="50526" PGL_stop="50277"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50526" e_stop="50277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="50526" e_stop="50277" e_length="250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50526" stop="50277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGTCGATACCCAACCCACTCGCCTTTCTCTTCTTCCTCGCGTGAGCAGACGCAAAAATTAGAACGCCAGTGAATCCAGATACTAGCAAGCCATGGAGAGGTTCAGGCGCGTGAACAGCGAGAGCAAGTGTAACGGAAAGTGGGGAAGAGCAGGCCAATATCATGCCCTCAACTCATTTGATTCGCAACAACAGAGCAAGGCACGCGAATTAGTCCTTGACGTGGCGAGATGAGTCCACGTAGAGTC</gDNA_template>
            <first_frame> T  K  S  I  P  N  P  L  A  F  L  F  F  L  A  *  A  D  A  K  I  R  T  P  V  N  P  D  T  S  K  P  W  R  G  S  G  A  *  T  A  R  A  S  V  T  E  S  G  E  E  Q  A  N  I  M  P  S  T  H  L  I  R  N  N  R  A  R  H  A  N  *  S  L  T  W  R  D  E  S  T  *  S  </first_frame>
            <second_frame>  Q  S  R  Y  P  T  H  S  P  F  S  S  S  S  R  E  Q  T  Q  K  L  E  R  Q  *  I  Q  I  L  A  S  H  G  E  V  Q  A  R  E  Q  R  E  Q  V  *  R  K  V  G  K  S  R  P  I  S  C  P  Q  L  I  *  F  A  T  T  E  Q  G  T  R  I  S  P  *  R  G  E  M  S  P  R  R  V </second_frame>
            <third_frame>   K  V  D  T  Q  P  T  R  L  S  L  L  P  R  V  S  R  R  K  N  *  N  A  S  E  S  R  Y  *  Q  A  M  E  R  F  R  R  V  N  S  E  S  K  C  N  G  K  W  G  R  A  G  Q  Y  H  A  L  N  S  F  D  S  Q  Q  Q  S  K  A  R  E  L  V  L  D  V  A  R  *  V  H  V  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0162G22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 40 chains have been computed
$ 
$ memory statistics:
$ 15544 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2220 bytes was the average size of a spliced alignment
$ 11440 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1906 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 48 backtrace matrices have been allocated
$ 
$ date finished: 2010-01-21 23:36:11
-->
