<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2010-01-21 23:31:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="921" stop="21"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="621" g_stop="321" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="621" e_stop="321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCAATCGCCTGGTATTGTCACTCGCCATGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTAATCCCCGCTTCCCTCAATATGTTTGCAAACTCCGAAAGTCTCTGTATGGGCTCAAGCAAGCCTCATGTGCTTGGTACACATGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="1349" stop="262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1049" g_stop="562" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1049" e_stop="562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCTACAACATCTCCAGTCTGATCTGTTTTGGGTCCTTCCCGGTCACCCCTGAATCACCACCGCCCGTGCCCACCCCCCAATACTTATCCCATGTTAACCCGTGGCAAAGCCGATATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTTCCCGATAGTGAACCAACAACCTACTATGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTGTGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGTGTGTACAAAATTAAACACAACGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTG-CCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCC-TTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355122" ref_strand="+" ref_description="SGN-E355122 [cTOS-18-H18]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="16248" stop="14918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15953" g_stop="15218" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-E355122" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15953" e_stop="15218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACTAATAACGGTGCAAATCTCAACAGTTATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGATAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCGAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350936" ref_strand="+" ref_description="SGN-E350936 [cTOS-7-D2]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcancaaagagtaagagccagaattttgaaagtggccagttggttcttaagcgtatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="16248" stop="14958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15953" g_stop="15258" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-E350936" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15953" e_stop="15258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACTAATAACGGTGCAAATCTCAACAGTTATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGATAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTC</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCANCAAAGAGTAAGAGCCAG-AATTTTGAAAGTGGCCAGTTGGTTCTTAAGCGTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353644" ref_strand="+" ref_description="SGN-E353644 [cTOS-10-I24]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="16248" stop="14959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15953" g_stop="15259" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-E353644" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15953" e_stop="15259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACTAATAACGGTGCAAATCTCAACAGTTATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGATAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTT</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707410" ref_strand="+" ref_description="SGN-E707410 [FA32DF11]">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="16312" stop="14972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16012" g_stop="15272" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-E707410" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16012" e_stop="15272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGATACGGGTGACACCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACTAATAACGGTGCAAATCTCAACAGTTATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGATAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTGC-GTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315032" ref_strand="+" ref_description="SGN-E315032 [cTOB-4-K2]">
      <seq>ttttaagtagcatttatctacacaataataatatggagaaaattggaggaattaaaagttttaacatggagaaaattccaaagaagcattttatcctagttcatggattttgtcatggttcttggtgttggtacaaaattatcaatttattggaaaaatgtggtcataaagtgactgctttagaccttggtggttgtggaattaatatgaaacaattgaatgaaattgattcaatatttgattatattcaacctttgatggatcttatgatatctttgtctaaagatgaaaagattattttggttagtcatagttacggtggtctttgtatttctcttgctatggaagctttcccacacaaaatttcaacaggagtgtttatctctgcttatatgcctaatcatgtggatccaccttctcttcttattcttgagtacttcaagaggacttcagtggagtcacttatggattgccaatttaagtttgatcaaggcatggaaaatccaccaacaagtgctattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="+" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="25580" stop="28543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25880" g_stop="26313" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26314" i_stop="28153" i_length="1840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28154" g_stop="28243" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="524" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="+" ref_id="SGN-E315032" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25880" e_stop="26313"/>
          <exon e_start="28154" e_stop="28243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAGGAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTAGTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTTATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTGGAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATTCAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTATTTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAGCTTTCCCACACAAAATTTCAACAGGAGTTTTTATCTCTGCTTATATGCCTAATCATGTGGATCCACCTTCTCTTCTTATTCTTGAGGTAATTTTCATTATTTTGTTTCAATTTATATGATTTTTTTTCTTTTTGAGGATTTATTTATGACTACTTATGACTTTTTGTTTTTAGCTCTTCTTATTCATGAGGTAATTTTTGCAATCCATGAGTTCAATTTTCATCAAAAAGAAAAACGAAAAAAAAAAGTACTCTACCTTATCTCAATTTGTGTCATACTGTTTAGCTTTTTAAGAGTTACTTTTATTATTTTTTAATGCTCAATTTATTATGTTAGAATAAGATTGAAGTAAATTTCATGGAATAGGATTTGATCCTACTAGATCCTAATAGTAAATGATCAGATCTTGTAAGTATTTTCTTTCTCATAAACGAAATCTTCGAAAAGGATTTGATCCTACTAGATCCTAATAGTAAATGATCAGATCTTGTAAGTATTTTCTTTCTCATAAACATAATTTGCTTTCGAAGATTTTACGTAATATTATTTAATATCTTTCACTAAATATGTTATTATTATTCAATTTATTTGGATTATTGTTATTTATTATTTTATAATATATTATATTATATTATAATGTATTATTATATGGTAGATACAATGTTTGGCTAGATTGTGTTGTTTGTTATTGTTTATTAACATTTTAATTGTTTGGTTTGATCGTATCATACTGTATTATAATTTATAAATTTACTTAAATATCCTTAATTATTATAGGATAGGAGACTTGACTAGGTTTAAATAATTAAGGTAAAGAGTAAAAAGTATTTTGAAATATTATGTAAAGATATAGTTGGAAAAAGAAATTAAGTAAAGAACGCACCAAATTGATTGTTCCACAAAATATAATTTTTTATTACTATGTAATAACGAAAGTTAACAATATAGTACAATACATTTTAAATAACAATTAAAACTAATATTGTAGATATAGTAACAATGCGAAATAATATAATCAATAACAATGATCCAAACATAATATAAATATGTCACTGTTATTTAATGGCCAAATACATACGCAGGTCCCTACAGTTGTTCGCACTTTTCCCCCCAGGTATCTCAACTAACCAAGATTCTTATTAAATCCTTTAACCCCCTATAATTTGATCCTTTTAAATATTCTTGGCTGATGTGGAGCCAAATTTCAATAAATTATTTTTGACAATTATGCGCGTGAGATGAACCTTTTCCACGTGGAAATTTTGACCAATACACTCCAACCCAATTACACGTCAGTGCCACATATTTTCTAACCCGTTTCTATACGAGAAAACCCTAAGAATCTCTCCCTTTCAATGACTTTTACAGCTGAAATTTTTAGATTTTACAGTGATTTTGAGTGTTTTGTTGAAGGAATCATCGAAGATTGCAGACGATTTTGGGGTTCATTCGCGATTTTCGAGTTGACATAGTACCTTCGCAGTTGAAGAAGAAGAAATCGATAAAGAAGATAAATTCGACATTGGAACTTGATGATTAAGAAGAAATCAATGAAAAAGTGATATATATAATGAGGTAAAGAAGATAAATATGATGAAGAGAAACAAAAGAGGAGAAATAATGGAAGAATGGGAGAAATTAGGGTTAAAAGGGGGAAGAAGATCGTTGGTGGGTGGTTCAAGATCCACATCCGCGCTTTTAAAGAGTCTGCACGCGCTTAAAGGACGTGAAATCACGTTTTGCTCCACATCAGCCAAGAATATTTAAAAGGATCAAATTATAGGGGGTTAAAAGATTTAATAGGAAACTTGGTTAGTTGAGGTACCTGAGGAAAAAACACAAATAACTTTAGGTACCTGCATATGTATTTGGCCTTATTTAATTTATCTATTGTCGTTCCGCCATATAATTATGGGTGCATTGCAGTACTTCAAGAGGACTTCAGTGGAGTCACTTATGGATTGCCAATTTAAGTTTGATCAAGGCATGGAAAATCCACCAACAAGTGCTATTTTT</genome_strand>
        <mrna_strand>TTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAGGAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTAGTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTTATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTGGAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATTCAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTATTTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAGCTTTCCCACACAAAATTTCAACAGGAGTGTTTATCTCTGCTTATATGCCTAATCATGTGGATCCACCTTCTCTTCTTATTCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCAAGAGGACTTCAGTGGAGTCACTTATGGATTGCCAATTTAAGTTTGATCAAGGCATGGAAAATCCACCAACAAGTGCTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325544" ref_strand="+" ref_description="SGN-E325544 [cTOC-15-O21]">
      <seq>ttttaagtagcatttatctacacaataataatatggagaaaattggaggaattaaaagttttaacatggagaaaattccaaagaagcattttatcctagttcatggattttgtcatggttcttggtgttggtacaaaattatcaatttattggaaaaatgtggtcataaagtgactgctttagaccttggtggttgtggaattaatatgaaacaattgaatgaaattgattcaatatttgattatattcaacctttgatggatcttatgatatctttgtctaaagatgaaaagattattttggttagtcatagttacggtggtctttgtatttctcttgctatggaagctttcccacacaaaatttcaacaggagtttttatctctgcttatatgcctaatcatgtggatccaccttctcttcttattcttgaggaatcatcgaagattgcagacgattttggggttcattcgcgattttcgagttgacatagtaccttcgcagttgaagaagaagaaatcgataaagaagataaattcgacattggaacttgatgattaagaagaaatcaatgaaaaagtgatatatataatgaggtaaagaagataaatatgatgaagagaaacaaaagaggagaaataatggaagaatgggagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="+" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="25580" stop="28166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25880" g_stop="26313" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26314" i_stop="27640" i_length="1327">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27641" g_stop="27866" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="660" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="+" ref_id="SGN-E325544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25880" e_stop="26313"/>
          <exon e_start="27641" e_stop="27866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAGGAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTAGTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTTATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTGGAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATTCAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTATTTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAGCTTTCCCACACAAAATTTCAACAGGAGTTTTTATCTCTGCTTATATGCCTAATCATGTGGATCCACCTTCTCTTCTTATTCTTGAGGTAATTTTCATTATTTTGTTTCAATTTATATGATTTTTTTTCTTTTTGAGGATTTATTTATGACTACTTATGACTTTTTGTTTTTAGCTCTTCTTATTCATGAGGTAATTTTTGCAATCCATGAGTTCAATTTTCATCAAAAAGAAAAACGAAAAAAAAAAGTACTCTACCTTATCTCAATTTGTGTCATACTGTTTAGCTTTTTAAGAGTTACTTTTATTATTTTTTAATGCTCAATTTATTATGTTAGAATAAGATTGAAGTAAATTTCATGGAATAGGATTTGATCCTACTAGATCCTAATAGTAAATGATCAGATCTTGTAAGTATTTTCTTTCTCATAAACGAAATCTTCGAAAAGGATTTGATCCTACTAGATCCTAATAGTAAATGATCAGATCTTGTAAGTATTTTCTTTCTCATAAACATAATTTGCTTTCGAAGATTTTACGTAATATTATTTAATATCTTTCACTAAATATGTTATTATTATTCAATTTATTTGGATTATTGTTATTTATTATTTTATAATATATTATATTATATTATAATGTATTATTATATGGTAGATACAATGTTTGGCTAGATTGTGTTGTTTGTTATTGTTTATTAACATTTTAATTGTTTGGTTTGATCGTATCATACTGTATTATAATTTATAAATTTACTTAAATATCCTTAATTATTATAGGATAGGAGACTTGACTAGGTTTAAATAATTAAGGTAAAGAGTAAAAAGTATTTTGAAATATTATGTAAAGATATAGTTGGAAAAAGAAATTAAGTAAAGAACGCACCAAATTGATTGTTCCACAAAATATAATTTTTTATTACTATGTAATAACGAAAGTTAACAATATAGTACAATACATTTTAAATAACAATTAAAACTAATATTGTAGATATAGTAACAATGCGAAATAATATAATCAATAACAATGATCCAAACATAATATAAATATGTCACTGTTATTTAATGGCCAAATACATACGCAGGTCCCTACAGTTGTTCGCACTTTTCCCCCCAGGTATCTCAACTAACCAAGATTCTTATTAAATCCTTTAACCCCCTATAATTTGATCCTTTTAAATATTCTTGGCTGATGTGGAGCCAAATTTCAATAAATTATTTTTGACAATTATGCGCGTGAGATGAACCTTTTCCACGTGGAAATTTTGACCAATACACTCCAACCCAATTACACGTCAGTGCCACATATTTTCTAACCCGTTTCTATACGAGAAAACCCTAAGAATCTCTCCCTTTCAATGACTTTTACAGCTGAAATTTTTAGATTTTACAGTGATTTTGAGTGTTTTGTTGAAGGAATCATCGAAGATTGCAGACGATTTTGGGGTTCATTCGCGATTTTCGAGTTGACATAGTACCTTCGCAGTTGAAGAAGAAGAAATCGATAAAGAAGATAAATTCGACATTGGAACTTGATGATTAAGAAGAAATCAATGAAAAAGTGATATATATAATGAGGTAAAGAAGATAAATATGATGAAGAGAAACAAAAGAGGAGAAATAATGGAAGAATGGGAGAAAT</genome_strand>
        <mrna_strand>TTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAGGAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTAGTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTTATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTGGAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATTCAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTATTTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAGCTTTCCCACACAAAATTTCAACAGGAGTTTTTATCTCTGCTTATATGCCTAATCATGTGGATCCACCTTCTCTTCTTATTCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCATCGAAGATTGCAGACGATTTTGGGGTTCATTCGCGATTTTCGAGTTGACATAGTACCTTCGCAGTTGAAGAAGAAGAAATCGATAAAGAAGATAAATTCGACATTGGAACTTGATGATTAAGAAGAAATCAATGAAAAAGTGATATATATAATGAGGTAAAGAAGATAAATATGATGAAGAGAAACAAAAGAGGAGAAATAATGGAAGAATGGGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328133" ref_strand="+" ref_description="SGN-E328133 [cTOC-22-L16]">
      <seq>ttttaagtagcatttatctacacaataataatatggagaaaattggaggaattaaaagttttaacatggagaaaattccaaagaagcattttatcctagttcatggattttgtcatggttcttggtgttggtacaaaattatcaatttattggaaaaatgtggtcataaagtgactgctttagaccttggtggttgtggaattaatatgaaacaattgaatgaaattgattcaatatttgattatattcaacctttgatggatcttatgatatctttgtctaaagatgaaaagattattttggttagtcatagttacggtggtctttgtatttctcttgctatggaagctttcccacacaaaatttcaacaggagtttttatctctgcttatatgcctaatcatgtggatccaccttctcttcttattcttgaggaatcatcgaagattgcagacgattttggggttcattcgcgattttcgagttgacatagtaccttcgcagttgaagaagaagaaatcgataaagaagataaattcgacattggaacttgatgattaagaagaaatcaatgaaaaagtgatatatataatgaggtaaagaagataaatatgatgaagagaaacaaaagaggagaaataatggaagaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="+" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="25580" stop="28160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25880" g_stop="26313" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26314" i_stop="27640" i_length="1327">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27641" g_stop="27860" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="654" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="+" ref_id="SGN-E328133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25880" e_stop="26313"/>
          <exon e_start="27641" e_stop="27860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAGGAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTAGTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTTATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTGGAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATTCAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTATTTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAGCTTTCCCACACAAAATTTCAACAGGAGTTTTTATCTCTGCTTATATGCCTAATCATGTGGATCCACCTTCTCTTCTTATTCTTGAGGTAATTTTCATTATTTTGTTTCAATTTATATGATTTTTTTTCTTTTTGAGGATTTATTTATGACTACTTATGACTTTTTGTTTTTAGCTCTTCTTATTCATGAGGTAATTTTTGCAATCCATGAGTTCAATTTTCATCAAAAAGAAAAACGAAAAAAAAAAGTACTCTACCTTATCTCAATTTGTGTCATACTGTTTAGCTTTTTAAGAGTTACTTTTATTATTTTTTAATGCTCAATTTATTATGTTAGAATAAGATTGAAGTAAATTTCATGGAATAGGATTTGATCCTACTAGATCCTAATAGTAAATGATCAGATCTTGTAAGTATTTTCTTTCTCATAAACGAAATCTTCGAAAAGGATTTGATCCTACTAGATCCTAATAGTAAATGATCAGATCTTGTAAGTATTTTCTTTCTCATAAACATAATTTGCTTTCGAAGATTTTACGTAATATTATTTAATATCTTTCACTAAATATGTTATTATTATTCAATTTATTTGGATTATTGTTATTTATTATTTTATAATATATTATATTATATTATAATGTATTATTATATGGTAGATACAATGTTTGGCTAGATTGTGTTGTTTGTTATTGTTTATTAACATTTTAATTGTTTGGTTTGATCGTATCATACTGTATTATAATTTATAAATTTACTTAAATATCCTTAATTATTATAGGATAGGAGACTTGACTAGGTTTAAATAATTAAGGTAAAGAGTAAAAAGTATTTTGAAATATTATGTAAAGATATAGTTGGAAAAAGAAATTAAGTAAAGAACGCACCAAATTGATTGTTCCACAAAATATAATTTTTTATTACTATGTAATAACGAAAGTTAACAATATAGTACAATACATTTTAAATAACAATTAAAACTAATATTGTAGATATAGTAACAATGCGAAATAATATAATCAATAACAATGATCCAAACATAATATAAATATGTCACTGTTATTTAATGGCCAAATACATACGCAGGTCCCTACAGTTGTTCGCACTTTTCCCCCCAGGTATCTCAACTAACCAAGATTCTTATTAAATCCTTTAACCCCCTATAATTTGATCCTTTTAAATATTCTTGGCTGATGTGGAGCCAAATTTCAATAAATTATTTTTGACAATTATGCGCGTGAGATGAACCTTTTCCACGTGGAAATTTTGACCAATACACTCCAACCCAATTACACGTCAGTGCCACATATTTTCTAACCCGTTTCTATACGAGAAAACCCTAAGAATCTCTCCCTTTCAATGACTTTTACAGCTGAAATTTTTAGATTTTACAGTGATTTTGAGTGTTTTGTTGAAGGAATCATCGAAGATTGCAGACGATTTTGGGGTTCATTCGCGATTTTCGAGTTGACATAGTACCTTCGCAGTTGAAGAAGAAGAAATCGATAAAGAAGATAAATTCGACATTGGAACTTGATGATTAAGAAGAAATCAATGAAAAAGTGATATATATAATGAGGTAAAGAAGATAAATATGATGAAGAGAAACAAAAGAGGAGAAATAATGGAAGAATGGG</genome_strand>
        <mrna_strand>TTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAGGAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTAGTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTTATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTGGAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATTCAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTATTTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAGCTTTCCCACACAAAATTTCAACAGGAGTTTTTATCTCTGCTTATATGCCTAATCATGTGGATCCACCTTCTCTTCTTATTCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCATCGAAGATTGCAGACGATTTTGGGGTTCATTCGCGATTTTCGAGTTGACATAGTACCTTCGCAGTTGAAGAAGAAGAAATCGATAAAGAAGATAAATTCGACATTGGAACTTGATGATTAAGAAGAAATCAATGAAAAAGTGATATATATAATGAGGTAAAGAAGATAAATATGATGAAGAGAAACAAAAGAGGAGAAATAATGGAAGAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250796" ref_strand="+" ref_description="SGN-E250796 [cLEG-13-C1]">
      <seq>ccactcggctttctcttcttccttgcgtgagcagacgcaaaaattacaacgcgggggaatccgggtactagcaagccatggagaggttcaagcacgtgaacagcgagagcaagtgtaacggaaagtggggaagagcaggccaatatcatgccctcaactcatttgattcgcaacaacagagcaaggcacgcgaattagtccttgacgtggcgagatgagtccacgtaaagtctcaagtacgaggcaaccgatctcaagtgtcgattctcccctccctttctgaaatgagacgatttttttcagaaaagggttgtccatccaaaattggaaaagggtttttgaaattcaaactaagggtgggcctttcccatcaagatccgatcgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="-" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="50808" stop="49931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50508" g_stop="50125" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="-" ref_id="SGN-E250796" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50508" e_stop="50125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCGCCTTTCTCTTCTTCCTCGCGTGAGCAGACGCAAAAATTAGAACGCCAGTGAATCCAGATACTAGCAAGCCATGGAGAGGTTCAGGCGCGTGAACAGCGAGAGCAAGTGTAACGGAAAGTGGGGAAGAGCAGGCCAATATCATGCCCTCAACTCATTTGATTCGCAACAACAGAGCAAGGCACGCGAATTAGTCCTTGACGTGGCGAGATGAGTCCACGTAGAGTCTC-AGTACGAGGCAACCGATCTC-AGTGTCGATTCT-CCCTCCC-TTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGT</genome_strand>
        <mrna_strand>CCACTCGGCTTTCTCTTCTTCCTTGCGTGAGCAGACGCAAAAATTACAACGCGGGGGAATCCGGGTACTAGCAAGCCATGGAGAGGTTCAAGCACGTGAACAGCGAGAGCAAGTGTAACGGAAAGTGGGGAAGAGCAGGCCAATATCATGCCCTCAACTCATTTGATTCGCAACAACAGAGCAAGGCACGCGAATTAGTCCTTGACGTGGCGAGATGAGTCCACGTAAAGTCTCAAGTACGAGGCAACCGATCTCAAGTGTCGATTCTCCCCTCCCTTTCTGAAATGAGACGATTTTTTTCAGAAAAGGGTTGTCCATCCAAAATTGGAAAAGGGTTTTTGAAATTCAAACTAAGGGTGGGCCTTTCCCATCAAGATCCGATCGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538409" ref_strand="+" ref_description="SGN-E538409 [TUS-57-J11]">
      <seq>gagattcagcattctctgacactcataaatcccaaaagattcatacccttaccgaagcgggcctcacagtaatcaagggttcattgcaagatgaagatatcctgcttgaagcactcaagcaagttgagatcgtgatttctgctgtttcatctaagcaagtccacgaacaaaagattctgatttctgctataaagcgtgctggttgcattaaaaggttcctcccttcagagttcggggctgaccctgacagaactcaagtttctgatttggaccacaacttctactcgagaaaatccgagattaggcgtattattgaagctgaaggcattccttacacctatgtctgttgtaacttatttactagtgttctcctatcgtcacttgctcaaccaggtcggaaagcccctccgagagatgaagtcagcatattcggtgatggaactgctaaagctgtctttatgaacgaaaatgatgttgctgcctttgtcataaatacagtggacgatgcacggactctgaacaaagtggtatacatgaggccaaagggaaatgtgtattcaatgaatgagctagtagggatttggggaaaggaaaaattgagaagacgctaaaaaagatttacatcactgaagatgagctcttgaagaaaatccgagataccccatatcctgagaatatggnagntggttttcatatactctacatttgntaaaggagatcagacatacttcagcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="+" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="63507" stop="64605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63807" g_stop="64541" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="+" ref_id="SGN-E538409" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63807" e_stop="64541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTCAGCATTCTCTGACACTCATAAATCCCAAAAGATTCATACCCTTACCGAAGCGGGCCTCACAGTAATCAAGGGTTCATTGCAAGATGAAGATATCCTGCTTGAAGCACTCAAGCAAGTTGAGATCGTGATTTCTGCTGTTTCATCTAAGCAAGTCCACGAACAAAAGATTCTGATTTCTGCTATAAAGCGTGCTGGTTGCATTAAAAGGTTCCTCCCTTCAGAGTTCGGGGCTGACCCTGACAGAACTCAAGTTTCTGATTTGGACCACAACTTCTACTCGAGAAAATCCGAGATTAGGCGTATTATTGAAGCTGAAGGCATTCCTTACACCTATGTCTGTTGTAACTTATTTACTAGTGTTCTCCTATCGTCACTTGCTCAACCAGGTCGGAAAGCCCCTCCGAGAGATGAAGTCAGCATATTCGGTGATGGAACTGCTAAAGCTGTCTTTATGAACGAAAATGATGTTGCTGCCTTTGTCATAAATACAGTGGACGATGCACGGACTCTGAACAAAGTGGTATACATGAGGCCAAAGGGAAATGTGTATTCAATGAATGAGCTAGTAGGGATTT-GGG-AAGGAAAAATTGAGAAGACGCTAAAAAAGATTTACATCACTGAAGATGAGCTCTTGAAGAAAATCCGAGATACCCCATATCCTGAGAATATGG-AGTTGGTTTTCATATACTCTACATTTGTTAAAGGAGATCAGACATACTTCAGCAAAG</genome_strand>
        <mrna_strand>GAGATTCAGCATTCTCTGACACTCATAAATCCCAAAAGATTCATACCCTTACCGAAGCGGGCCTCACAGTAATCAAGGGTTCATTGCAAGATGAAGATATCCTGCTTGAAGCACTCAAGCAAGTTGAGATCGTGATTTCTGCTGTTTCATCTAAGCAAGTCCACGAACAAAAGATTCTGATTTCTGCTATAAAGCGTGCTGGTTGCATTAAAAGGTTCCTCCCTTCAGAGTTCGGGGCTGACCCTGACAGAACTCAAGTTTCTGATTTGGACCACAACTTCTACTCGAGAAAATCCGAGATTAGGCGTATTATTGAAGCTGAAGGCATTCCTTACACCTATGTCTGTTGTAACTTATTTACTAGTGTTCTCCTATCGTCACTTGCTCAACCAGGTCGGAAAGCCCCTCCGAGAGATGAAGTCAGCATATTCGGTGATGGAACTGCTAAAGCTGTCTTTATGAACGAAAATGATGTTGCTGCCTTTGTCATAAATACAGTGGACGATGCACGGACTCTGAACAAAGTGGTATACATGAGGCCAAAGGGAAATGTGTATTCAATGAATGAGCTAGTAGGGATTTGGGGAAAGGAAAAATTGAGAAGACGCTAAAAAAGATTTACATCACTGAAGATGAGCTCTTGAAGAAAATCCGAGATACCCCATATCCTGAGAATATGGNAGNTGGTTTTCATATACTCTACATTTGNTAAAGGAGATCAGACATACTTCAGCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269704" ref_strand="+" ref_description="SGN-E269704 [cLEM-17-I14]">
      <seq>agattcagcattctctgacactcataaatcccaaaagattcatacccttaccgaagcgggcctcacagtaatcaagggttcattgcaagatgaagatatcctgcttgaagcactcaagcaagttgagatcgtgatttctgctgtttcatctaagcaagtccacgaacaaaagattctgatttctgctataaagcgtgctggttgcattaaaaggttcctcccttcagagttcggggctgaccctgacagaactcaagtttctgatttggaccacaacttctactcgagaaaatccgagattaggcgtattattgaagctgaaggcattccttacacctatgtctgttgtaacttatttactagtgttctcctatcgtcacttgctcaaccaggtcggaaagcccctccgagagatgaagtcagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0162G22-CoBMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0162G22.2" temp_strand="+" temp_description="C01HBa0162G22.2  AC233126.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0162G22 upload_account_name:manual">
        <position start="63508" stop="64534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63808" g_stop="64234" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0162G22.2" gen_strand="+" ref_id="SGN-E269704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0162G22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63808" e_stop="64234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCAGCATTCTCTGACACTCATAAATCCCAAAAGATTCATACCCTTACCGAAGCGGGCCTCACAGTAATCAAGGGTTCATTGCAAGATGAAGATATCCTGCTTGAAGCACTCAAGCAAGTTGAGATCGTGATTTCTGCTGTTTCATCTAAGCAAGTCCACGAACAAAAGATTCTGATTTCTGCTATAAAGCGTGCTGGTTGCATTAAAAGGTTCCTCCCTTCAGAGTTCGGGGCTGACCCTGACAGAACTCAAGTTTCTGATTTGGACCACAACTTCTACTCGAGAAAATCCGAGATTAGGCGTATTATTGAAGCTGAAGGCATTCCTTACACCTATGTCTGTTGTAACTTATTTACTAGTGTTCTCCTATCGTCACTTGCTCAACCAGGTCGGAAAGCCCCTCCGAGAGATGAAGTCAGCATA</genome_strand>
        <mrna_strand>AGATTCAGCATTCTCTGACACTCATAAATCCCAAAAGATTCATACCCTTACCGAAGCGGGCCTCACAGTAATCAAGGGTTCATTGCAAGATGAAGATATCCTGCTTGAAGCACTCAAGCAAGTTGAGATCGTGATTTCTGCTGTTTCATCTAAGCAAGTCCACGAACAAAAGATTCTGATTTCTGCTATAAAGCGTGCTGGTTGCATTAAAAGGTTCCTCCCTTCAGAGTTCGGGGCTGACCCTGACAGAACTCAAGTTTCTGATTTGGACCACAACTTCTACTCGAGAAAATCCGAGATTAGGCGTATTATTGAAGCTGAAGGCATTCCTTACACCTATGTCTGTTGTAACTTATTTACTAGTGTTCTCCTATCGTCACTTGCTCAACCAGGTCGGAAAGCCCCTCCGAGAGATGAAGTCAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1049" PGL_stop="321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1049" e_stop="321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="1049" e_stop="321" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1049" stop="562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="621" stop="321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCTACAACATCTCCAGTCTGATCTGTTTTGGGTCCTTCCCGGTCACCCCTGAATCACCACCGCCCGTGCCCACCCCCCAATACTTATCCCATGTTAACCCGTGGCAAAGCCGATATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTTCCCGATAGTGAACCAACAACCTACTATGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTGTGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGTGTGTACAAAATTAAACACAACGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCAATCGCCTGGTATTGTCACTCGCCATGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTAATCCCCGCTTCCCTCAATATGTTTGCAAACTCCGAAAGTCTCTGTATGGGCTCAAGCAAGCCTCATGTGCTTGGTACACATGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  V  *  S  V  L  G  P  S  R  S  P  L  N  H  H  R  P  C  P  P  P  N  T  Y  P  M  L  T  R  G  K  A  D  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  C  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  C  V  Q  N  *  T  Q  R  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  Q  S  P  G  I  V  T  R  H  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  I  C  L  Q  T  P  K  V  S  V  W  A  Q  A  S  L  M  C  L  V  H  M  S  E  N  V </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  L  Q  H  L  Q  S  D  L  F  W  V  L  P  G  H  P  *  I  T  T  A  R  A  H  P  P  I  L  I  P  C  *  P  V  A  K  P  I  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  D  S  E  P  T  T  Y  Y  V  A  S  K  N  A  Y  W  R  H  A  V  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  C  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  N  R  L  V  L  S  L  A  M  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  N  P  R  F  P  Q  Y  V  C  K  L  R  K  S  L  Y  G  L  K  Q  A  S  C  A  W  Y  T  C  L  K  T   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  Y  N  I  S  S  L  I  C  F  G  S  F  P  V  T  P  E  S  P  P  P  V  P  T  P  Q  Y  L  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  F  P  I  V  N  Q  Q  P  T  M  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  V  C  T  K  L  N  T  T  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  I  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  E  S  L  C  M  G  S  S  K  P  H  V  L  G  T  H  V  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0162G22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="892" stop="323"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVAKPISLNPKPFRLPYYQIHPFPDSEPTTYYVASKNAYWRHAVDDEFKALTDQKTWVLVPKPHGRHPVGCKCVYKIKHNADGSISRYKARLVAKGYNQEYGLDYSETFSPVIRQETNRLVLSLAMRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVNPRFPQYVCKLRKSLYGLKQASCAWYTCLKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16012" PGL_stop="15218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16012" e_stop="15218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="16012" e_stop="15218" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16012" stop="15272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15953" stop="15218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15953" stop="15258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15953" stop="15259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATTTGATACGGGTGACACCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACTAATAACGGTGCAAATCTCAACAGTTATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGATAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCGAACTG</gDNA_template>
            <first_frame> R  F  D  T  G  D  T  S  R  T  *  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  A  N  R  F  *  W  T  Q  I  H  F  G  C  H  R  L  F  H  Q  V  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  S  D  M  P  I  W  S  S  R  I  H  H  H  *  *  R  C  K  S  Q  Q  L  S  D  E  R  D  M  *  T  I  *  D  Y  S  P  K  V  H  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  *  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  N  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  *  S  R  D  T  V  T  E  D  H  P  R  S  *  A  K  *  C  *  V  G  *  Q  T  D  *  S  T  S  F  D  *  *  E  E  D  G  C  C  L  P  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  R  R  V  Q  R  K  V  R  T  E  L </first_frame>
            <second_frame>  D  L  I  R  V  T  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  T  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  N  N  G  A  N  L  N  S  Y  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  R  S  T  A  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N   </second_frame>
            <third_frame>   I  *  Y  G  *  H  L  T  N  L  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  V  L  *  S  Q  P  L  L  M  D  T  D  S  F  W  L  P  S  I  I  S  P  S  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  Y  A  D  L  E  F  Q  N  P  S  S  L  I  T  V  Q  I  S  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  F  T  E  G  P  L  L  I  A  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  I  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  Q  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  L  K  S  R  Y  R  H  *  G  S  S  K  K  L  S  *  V  M  L  S  G  L  A  N  G  L  I  N  *  L  *  L  M  R  R  G  W  L  L  F  A  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  K  T  S  T  K  E  S  S  H  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0162G22.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16011" stop="15220"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVTPHELNAMSSPWPFVAWGMDVIGPIEPTASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESIITNNGANLNSYLMKEICEQFKIIHRRSTAYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEYKGKFAPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25880" PGL_stop="28243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25880" e_stop="26313"/>
            <exon e_start="27641" e_stop="27866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.844" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25880" e_stop="26313" e_length="434"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.844">
            <gDNA_intron_boundary i_start="26314" i_stop="27640" i_length="1327"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27641" e_stop="27866" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25880" stop="26313"/>
              <exon start="27641" stop="27866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25880" stop="26313"/>
              <exon start="27641" stop="27860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAGGAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTAGTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTTATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTGGAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATTCAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTATTTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAGCTTTCCCACACAAAATTTCAACAGGAGTTTTTATCTCTGCTTATATGCCTAATCATGTGGATCCACCTTCTCTTCTTATTCTTGAG : GAATCATCGAAGATTGCAGACGATTTTGGGGTTCATTCGCGATTTTCGAGTTGACATAGTACCTTCGCAGTTGAAGAAGAAGAAATCGATAAAGAAGATAAATTCGACATTGGAACTTGATGATTAAGAAGAAATCAATGAAAAAGTGATATATATAATGAGGTAAAGAAGATAAATATGATGAAGAGAAACAAAAGAGGAGAAATAATGGAAGAATGGGAGAAAT</gDNA_template>
            <first_frame> F  *  V  A  F  I  Y  T  I  I  I  W  R  K  L  E  E  L  K  V  L  T  W  R  K  F  Q  R  S  I  L  S  *  F  M  D  F  V  M  V  L  G  V  G  T  K  L  S  I  Y  W  K  N  V  V  I  K  *  L  L  *  T  L  V  V  V  E  L  I  *  N  N  *  M  K  L  I  Q  Y  L  I  I  F  N  L  *  W  I  L  *  Y  L  C  L  K  M  K  R  L  F  W  L  V  I  V  T  V  V  F  V  F  L  L  L  W  K  L  S  H  T  K  F  Q  Q  E  F  L  S  L  L  I  C  L  I  M  W  I  H  L  L  F  L  F  L  R :   N  H  R  R  L  Q  T  I  L  G  F  I  R  D  F  R  V  D  I  V  P  S  Q  L  K  K  K  K  S  I  K  K  I  N  S  T  L  E  L  D  D  *  E  E  I  N  E  K  V  I  Y  I  M  R  *  R  R  *  I  *  *  R  E  T  K  E  E  K  *  W  K  N  G  R  N </first_frame>
            <second_frame>  F  K  *  H  L  S  T  Q  *  *  Y  G  E  N  W  R  N  *  K  F  *  H  G  E  N  S  K  E  A  F  Y  P  S  S  W  I  L  S  W  F  L  V  L  V  Q  N  Y  Q  F  I  G  K  M  W  S  *  S  D  C  F  R  P  W  W  L  W  N  *  Y  E  T  I  E  *  N  *  F  N  I  *  L  Y  S  T  F  D  G  S  Y  D  I  F  V  *  R  *  K  D  Y  F  G  *  S  *  L  R  W  S  L  Y  F  S  C  Y  G  S  F  P  T  Q  N  F  N  R  S  F  Y  L  C  L  Y  A  *  S  C  G  S  T  F  S  S  Y  S  *   : G  I  I  E  D  C  R  R  F  W  G  S  F  A  I  F  E  L  T  *  Y  L  R  S  *  R  R  R  N  R  *  R  R  *  I  R  H  W  N  L  M  I  K  K  K  S  M  K  K  *  Y  I  *  *  G  K  E  D  K  Y  D  E  E  K  Q  K  R  R  N  N  G  R  M  G  E   </second_frame>
            <third_frame>   L  S  S  I  Y  L  H  N  N  N  M  E  K  I  G  G  I  K  S  F  N  M  E  K  I  P  K  K  H  F  I  L  V  H  G  F  C  H  G  S  W  C  W  Y  K  I  I  N  L  L  E  K  C  G  H  K  V  T  A  L  D  L  G  G  C  G  I  N  M  K  Q  L  N  E  I  D  S  I  F  D  Y  I  Q  P  L  M  D  L  M  I  S  L  S  K  D  E  K  I  I  L  V  S  H  S  Y  G  G  L  C  I  S  L  A  M  E  A  F  P  H  K  I  S  T  G  V  F  I  S  A  Y  M  P  N  H  V  D  P  P  S  L  L  I  L  E  :  E  S  S  K  I  A  D  D  F  G  V  H  S  R  F  S  S  *  H  S  T  F  A  V  E  E  E  E  I  D  K  E  D  K  F  D  I  G  T  *  *  L  R  R  N  Q  *  K  S  D  I  Y  N  E  V  K  K  I  N  M  M  K  R  N  K  R  G  E  I  M  E  E  W  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0162G22.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25882" stop="26313"/>
                    <exon start="27641" stop="27694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSIYLHNNNMEKIGGIKSFNMEKIPKKHFILVHGFCHGSWCWYKIINLLEKCGHKVTALDLGGCGINMKQLNEIDSIFDYIQPLMDLMISLSKDEKIILVSHSYGGLCISLAMEAFPHKISTGVFISAYMPNHVDPPSLLILEESSKIADDFGVHSRFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25880" e_stop="26313"/>
            <exon e_start="28154" e_stop="28243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.833" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="25880" e_stop="26313" e_length="434"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.833">
            <gDNA_intron_boundary i_start="26314" i_stop="28153" i_length="1840"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28154" e_stop="28243" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25880" stop="26313"/>
              <exon start="28154" stop="28243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315032" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAGGAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTAGTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTTATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTGGAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATTCAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTATTTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAGCTTTCCCACACAAAATTTCAACAGGAGTTTTTATCTCTGCTTATATGCCTAATCATGTGGATCCACCTTCTCTTCTTATTCTTGAG : TACTTCAAGAGGACTTCAGTGGAGTCACTTATGGATTGCCAATTTAAGTTTGATCAAGGCATGGAAAATCCACCAACAAGTGCTATTTTT</gDNA_template>
            <first_frame> F  *  V  A  F  I  Y  T  I  I  I  W  R  K  L  E  E  L  K  V  L  T  W  R  K  F  Q  R  S  I  L  S  *  F  M  D  F  V  M  V  L  G  V  G  T  K  L  S  I  Y  W  K  N  V  V  I  K  *  L  L  *  T  L  V  V  V  E  L  I  *  N  N  *  M  K  L  I  Q  Y  L  I  I  F  N  L  *  W  I  L  *  Y  L  C  L  K  M  K  R  L  F  W  L  V  I  V  T  V  V  F  V  F  L  L  L  W  K  L  S  H  T  K  F  Q  Q  E  F  L  S  L  L  I  C  L  I  M  W  I  H  L  L  F  L  F  L  S :   T  S  R  G  L  Q  W  S  H  L  W  I  A  N  L  S  L  I  K  A  W  K  I  H  Q  Q  V  L  F   </first_frame>
            <second_frame>  F  K  *  H  L  S  T  Q  *  *  Y  G  E  N  W  R  N  *  K  F  *  H  G  E  N  S  K  E  A  F  Y  P  S  S  W  I  L  S  W  F  L  V  L  V  Q  N  Y  Q  F  I  G  K  M  W  S  *  S  D  C  F  R  P  W  W  L  W  N  *  Y  E  T  I  E  *  N  *  F  N  I  *  L  Y  S  T  F  D  G  S  Y  D  I  F  V  *  R  *  K  D  Y  F  G  *  S  *  L  R  W  S  L  Y  F  S  C  Y  G  S  F  P  T  Q  N  F  N  R  S  F  Y  L  C  L  Y  A  *  S  C  G  S  T  F  S  S  Y  S  *   : V  L  Q  E  D  F  S  G  V  T  Y  G  L  P  I  *  V  *  S  R  H  G  K  S  T  N  K  C  Y  F  </second_frame>
            <third_frame>   L  S  S  I  Y  L  H  N  N  N  M  E  K  I  G  G  I  K  S  F  N  M  E  K  I  P  K  K  H  F  I  L  V  H  G  F  C  H  G  S  W  C  W  Y  K  I  I  N  L  L  E  K  C  G  H  K  V  T  A  L  D  L  G  G  C  G  I  N  M  K  Q  L  N  E  I  D  S  I  F  D  Y  I  Q  P  L  M  D  L  M  I  S  L  S  K  D  E  K  I  I  L  V  S  H  S  Y  G  G  L  C  I  S  L  A  M  E  A  F  P  H  K  I  S  T  G  V  F  I  S  A  Y  M  P  N  H  V  D  P  P  S  L  L  I  L  E  :  Y  F  K  R  T  S  V  E  S  L  M  D  C  Q  F  K  F  D  Q  G  M  E  N  P  P  T  S  A  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0162G22.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25882" stop="26313"/>
                    <exon start="28154" stop="28243"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSIYLHNNNMEKIGGIKSFNMEKIPKKHFILVHGFCHGSWCWYKIINLLEKCGHKVTALDLGGCGINMKQLNEIDSIFDYIQPLMDLMISLSKDEKIILVSHSYGGLCISLAMEAFPHKISTGVFISAYMPNHVDPPSLLILEYFKRTSVESLMDCQFKFDQGMENPPTSAIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="50508" PGL_stop="50125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50508" e_stop="50125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="50508" e_stop="50125" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50508" stop="50125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACTCGCCTTTCTCTTCTTCCTCGCGTGAGCAGACGCAAAAATTAGAACGCCAGTGAATCCAGATACTAGCAAGCCATGGAGAGGTTCAGGCGCGTGAACAGCGAGAGCAAGTGTAACGGAAAGTGGGGAAGAGCAGGCCAATATCATGCCCTCAACTCATTTGATTCGCAACAACAGAGCAAGGCACGCGAATTAGTCCTTGACGTGGCGAGATGAGTCCACGTAGAGTCTCAGTACGAGGCAACCGATCTCAGTGTCGATTCTCCCTCCCTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGT</gDNA_template>
            <first_frame> P  L  A  F  L  F  F  L  A  *  A  D  A  K  I  R  T  P  V  N  P  D  T  S  K  P  W  R  G  S  G  A  *  T  A  R  A  S  V  T  E  S  G  E  E  Q  A  N  I  M  P  S  T  H  L  I  R  N  N  R  A  R  H  A  N  *  S  L  T  W  R  D  E  S  T  *  S  L  S  T  R  Q  P  I  S  V  S  I  L  P  P  F  C  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  P  S </first_frame>
            <second_frame>  H  S  P  F  S  S  S  S  R  E  Q  T  Q  K  L  E  R  Q  *  I  Q  I  L  A  S  H  G  E  V  Q  A  R  E  Q  R  E  Q  V  *  R  K  V  G  K  S  R  P  I  S  C  P  Q  L  I  *  F  A  T  T  E  Q  G  T  R  I  S  P  *  R  G  E  M  S  P  R  R  V  S  V  R  G  N  R  S  Q  C  R  F  S  L  P  S  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  P   </second_frame>
            <third_frame>   T  R  L  S  L  L  P  R  V  S  R  R  K  N  *  N  A  S  E  S  R  Y  *  Q  A  M  E  R  F  R  R  V  N  S  E  S  K  C  N  G  K  W  G  R  A  G  Q  Y  H  A  L  N  S  F  D  S  Q  Q  Q  S  K  A  R  E  L  V  L  D  V  A  R  *  V  H  V  E  S  Q  Y  E  A  T  D  L  S  V  D  S  P  S  L  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0162G22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="63807" PGL_stop="64541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63807" e_stop="64541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="63807" e_stop="64541" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63807" stop="64541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63808" stop="64234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATTCAGCATTCTCTGACACTCATAAATCCCAAAAGATTCATACCCTTACCGAAGCGGGCCTCACAGTAATCAAGGGTTCATTGCAAGATGAAGATATCCTGCTTGAAGCACTCAAGCAAGTTGAGATCGTGATTTCTGCTGTTTCATCTAAGCAAGTCCACGAACAAAAGATTCTGATTTCTGCTATAAAGCGTGCTGGTTGCATTAAAAGGTTCCTCCCTTCAGAGTTCGGGGCTGACCCTGACAGAACTCAAGTTTCTGATTTGGACCACAACTTCTACTCGAGAAAATCCGAGATTAGGCGTATTATTGAAGCTGAAGGCATTCCTTACACCTATGTCTGTTGTAACTTATTTACTAGTGTTCTCCTATCGTCACTTGCTCAACCAGGTCGGAAAGCCCCTCCGAGAGATGAAGTCAGCATATTCGGTGATGGAACTGCTAAAGCTGTCTTTATGAACGAAAATGATGTTGCTGCCTTTGTCATAAATACAGTGGACGATGCACGGACTCTGAACAAAGTGGTATACATGAGGCCAAAGGGAAATGTGTATTCAATGAATGAGCTAGTAGGGATTTGGGAAGGAAAAATTGAGAAGACGCTAAAAAAGATTTACATCACTGAAGATGAGCTCTTGAAGAAAATCCGAGATACCCCATATCCTGAGAATATGGAGTTGGTTTTCATATACTCTACATTTGTTAAAGGAGATCAGACATACTTCAGCAAAG</gDNA_template>
            <first_frame> E  I  Q  H  S  L  T  L  I  N  P  K  R  F  I  P  L  P  K  R  A  S  Q  *  S  R  V  H  C  K  M  K  I  S  C  L  K  H  S  S  K  L  R  S  *  F  L  L  F  H  L  S  K  S  T  N  K  R  F  *  F  L  L  *  S  V  L  V  A  L  K  G  S  S  L  Q  S  S  G  L  T  L  T  E  L  K  F  L  I  W  T  T  T  S  T  R  E  N  P  R  L  G  V  L  L  K  L  K  A  F  L  T  P  M  S  V  V  T  Y  L  L  V  F  S  Y  R  H  L  L  N  Q  V  G  K  P  L  R  E  M  K  S  A  Y  S  V  M  E  L  L  K  L  S  L  *  T  K  M  M  L  L  P  L  S  *  I  Q  W  T  M  H  G  L  *  T  K  W  Y  T  *  G  Q  R  E  M  C  I  Q  *  M  S  *  *  G  F  G  K  E  K  L  R  R  R  *  K  R  F  T  S  L  K  M  S  S  *  R  K  S  E  I  P  H  I  L  R  I  W  S  W  F  S  Y  T  L  H  L  L  K  E  I  R  H  T  S  A  K </first_frame>
            <second_frame>  R  F  S  I  L  *  H  S  *  I  P  K  D  S  Y  P  Y  R  S  G  P  H  S  N  Q  G  F  I  A  R  *  R  Y  P  A  *  S  T  Q  A  S  *  D  R  D  F  C  C  F  I  *  A  S  P  R  T  K  D  S  D  F  C  Y  K  A  C  W  L  H  *  K  V  P  P  F  R  V  R  G  *  P  *  Q  N  S  S  F  *  F  G  P  Q  L  L  L  E  K  I  R  D  *  A  Y  Y  *  S  *  R  H  S  L  H  L  C  L  L  *  L  I  Y  *  C  S  P  I  V  T  C  S  T  R  S  E  S  P  S  E  R  *  S  Q  H  I  R  *  W  N  C  *  S  C  L  Y  E  R  K  *  C  C  C  L  C  H  K  Y  S  G  R  C  T  D  S  E  Q  S  G  I  H  E  A  K  G  K  C  V  F  N  E  *  A  S  R  D  L  G  R  K  N  *  E  D  A  K  K  D  L  H  H  *  R  *  A  L  E  E  N  P  R  Y  P  I  S  *  E  Y  G  V  G  F  H  I  L  Y  I  C  *  R  R  S  D  I  L  Q  Q   </second_frame>
            <third_frame>   D  S  A  F  S  D  T  H  K  S  Q  K  I  H  T  L  T  E  A  G  L  T  V  I  K  G  S  L  Q  D  E  D  I  L  L  E  A  L  K  Q  V  E  I  V  I  S  A  V  S  S  K  Q  V  H  E  Q  K  I  L  I  S  A  I  K  R  A  G  C  I  K  R  F  L  P  S  E  F  G  A  D  P  D  R  T  Q  V  S  D  L  D  H  N  F  Y  S  R  K  S  E  I  R  R  I  I  E  A  E  G  I  P  Y  T  Y  V  C  C  N  L  F  T  S  V  L  L  S  S  L  A  Q  P  G  R  K  A  P  P  R  D  E  V  S  I  F  G  D  G  T  A  K  A  V  F  M  N  E  N  D  V  A  A  F  V  I  N  T  V  D  D  A  R  T  L  N  K  V  V  Y  M  R  P  K  G  N  V  Y  S  M  N  E  L  V  G  I  W  E  G  K  I  E  K  T  L  K  K  I  Y  I  T  E  D  E  L  L  K  K  I  R  D  T  P  Y  P  E  N  M  E  L  V  F  I  Y  S  T  F  V  K  G  D  Q  T  Y  F  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0162G22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63809" stop="64540"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSAFSDTHKSQKIHTLTEAGLTVIKGSLQDEDILLEALKQVEIVISAVSSKQVHEQKILISAIKRAGCIKRFLPSEFGADPDRTQVSDLDHNFYSRKSEIRRIIEAEGIPYTYVCCNLFTSVLLSSLAQPGRKAPPRDEVSIFGDGTAKAVFMNENDVAAFVINTVDDARTLNKVVYMRPKGNVYSMNELVGIWEGKIEKTLKKIYITEDELLKKIRDTPYPENMELVFIYSTFVKGDQTYFSK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 66 chains have been computed
$ 
$ memory statistics:
$ 25968 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2164 bytes was the average size of a spliced alignment
$ 10384 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2076 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 77 backtrace matrices have been allocated
$ 
$ date finished: 2010-01-21 23:33:04
-->
