<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:39:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313227" ref_strand="+" ref_description="SGN-E313227 [cTOA-18-I7]">
      <seq>ccttattgaagaacctcttgttttaagatttgtcaaaattgtttttactgtcaaatgaacaacatacccgtgaaatcatacaaagtctttactctttctggataaaaacgtattctcatgtcacaaattttgcttatgcttgtatcattcatggaaatatggtttatttgccaattgattctgtttgggatgtctttttaaggttcacataacacaaggagatcatgtgggaaaagctgctattgtatcatgggtgactatggatgaacctggttcaagtacactagtgtactggagtgagaaaagcaagcataagtgtaaggccagcggaaaagttacttcctatacatattataactatacttgtggttacatccaccactgcaatatcaaaaatttgaagtttgataccaaatactactataagattgggattggacatatatcacgaaccttctggttcacaactcctccagaagtcggccctgatgtaccctatacatttggtctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="23423" stop="24648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23723" g_stop="24125" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24126" i_stop="24239" i_length="114">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24240" g_stop="24348" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="512" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E313227" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23723" e_stop="24125"/>
          <exon e_start="24240" e_stop="24348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATTGAAGAACCTCTTGTTTTAATATTTGTCAAAATTTTTTTTACTGTCAAATGAACAACATACCCGTGAAATCATACAAAGTTTTTACTCTTTCTGGATAAAAACGTATTCTCATGTCACAAATTTTGTTTATGCTTGTATCATTCATGGAAATATGGTTTATTTGCCAATTGATTCTGTTTGGGATGTCTTTTTAAGGTTCACATAACACAAGGAGATCATGTGGGAAAAGCTGTTATTGTATCATGGGTGACTATGGATGAACCTGGTTCAAGTACAGTAGTATACTGGAGTGAGAAAAGCAAGCATAAGTGTAAGGCCAGCGGAAAAGTTACTTCCTATACATATTATAACTATACTTCTGGTTACATCCACCACTGCAATATCAAAAATTTGAAGGTGAATATTCTTTCTTTCATTCCCTTTTTGGGTTGGATAATTTTGGTTTCTTGAGCATTTGTAGACTAATTTAACCCTGCTTAAACTTACAACGGATTTAATACTCCTTTGCAGTTTGATACCAAATACTACTATAAGATTGGGATTGGACATATATCACGAACCTTCTGGTTCACAACTCCTCCAGAAGTCGGCCCTGATGTACCCTATACATTTGGTCTTA</genome_strand>
        <mrna_strand>CCTTATTGAAGAACCTCTTGTTTTAAGATTTGTCAAAATTGTTTTTACTGTCAAATGAACAACATACCCGTGAAATCATACAAAGTCTTTACTCTTTCTGGATAAAAACGTATTCTCATGTCACAAATTTTGCTTATGCTTGTATCATTCATGGAAATATGGTTTATTTGCCAATTGATTCTGTTTGGGATGTCTTTTTAAGGTTCACATAACACAAGGAGATCATGTGGGAAAAGCTGCTATTGTATCATGGGTGACTATGGATGAACCTGGTTCAAGTACACTAGTGTACTGGAGTGAGAAAAGCAAGCATAAGTGTAAGGCCAGCGGAAAAGTTACTTCCTATACATATTATAACTATACTTGTGGTTACATCCACCACTGCAATATCAAAAATTTGAAG..................................................................................................................TTTGATACCAAATACTACTATAAGATTGGGATTGGACATATATCACGAACCTTCTGGTTCACAACTCCTCCAGAAGTCGGCCCTGATGTACCCTATACATTTGGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208594" ref_strand="+" ref_description="SGN-E208594 [cLEC-39-P4]">
      <seq>gagaaaagcgagcataagtgtaaggccagcggaaaagttacttcctatacatataataactatacttctggttacatccaccactgtaatatcaaaaatttgaagtttgataccaaatactactataagattgggattggacatatatcacgaaccttctggttcacaactcctccagaagtcggccctgatgtaccctatacattaggtcttataggggatcttggtcacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="23721" stop="24652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24021" g_stop="24125" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24126" i_stop="24239" i_length="114">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24240" g_stop="24351" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="217" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E208594" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24021" e_stop="24125"/>
          <exon e_start="24240" e_stop="24351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAGCAAGCATAAGTGTAAGGCCAGCGGAAAAGTTACTTCCTATACATATTATAACTATACTTCTGGTTACATCCACCACTGCAATATCAAAAATTTGAAGGTGAATATTCTTTCTTTCATTCCCTTTTTGGGTTGGATAATTTTGGTTTCTTGAGCATTTGTAGACTAATTTAACCCTGCTTAAACTTACAACGGATTTAATACTCCTTTGCAGTTTGATACCAAATACTACTATAAGATTGGGATTGGACATATATCACGAACCTTCTGGTTCACAACTCCTCCAGAAGTCGGCCCTGATGTACCCTATACATTTGGTCTTATAG</genome_strand>
        <mrna_strand>GAGAAAAGCGAGCATAAGTGTAAGGCCAGCGGAAAAGTTACTTCCTATACATATAATAACTATACTTCTGGTTACATCCACCACTGTAATATCAAAAATTTGAAG..................................................................................................................TTTGATACCAAATACTACTATAAGATTGGGATTGGACATATATCACGAACCTTCTGGTTCACAACTCCTCCAGAAGTCGGCCCTGATGTACCCTATACATTAGGTCTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378221" ref_strand="+" ref_description="SGN-E378221 [TUS-43-H12]">
      <seq>tattataactatacttctggttacatccaccactgcaatatcaaaaatttgaatttccctaccaaatactactataagattgggattggacatatatcacgaaccttctggttcacaactcctccagaagtcggccctgatgtaccctatacatttggtcttataggggatcttggtcagagttttgattcaaacaagacactcacacattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="23772" stop="25114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24072" g_stop="24125" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24126" i_stop="24239" i_length="114">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24240" g_stop="24351" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="166" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24352" i_stop="24766" i_length="415">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.773" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24767" g_stop="24814" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="214" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E378221" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24072" e_stop="24125"/>
          <exon e_start="24240" e_stop="24351"/>
          <exon e_start="24767" e_stop="24814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATAACTATACTTCTGGTTACATCCACCACTGCAATATCAAAAATTTGAAGGTGAATATTCTTTCTTTCATTCCCTTTTTGGGTTGGATAATTTTGGTTTCTTGAGCATTTGTAGACTAATTTAACCCTGCTTAAACTTACAACGGATTTAATACTCCTTTGCAGTTTGATACCAAATACTACTATAAGATTGGGATTGGACATATATCACGAACCTTCTGGTTCACAACTCCTCCAGAAGTCGGCCCTGATGTACCCTATACATTTGGTCTTATAGGTAACAATTTTTCAACCAAATCATTGCTGTTGGAACTTCGTGGAGCTTGCTTTGGTTATTTTATGCACTGTTTCTGAAGTTTCATTGATATTGTGCTTTCTATACCGTACCAAAATAAAGATGGACTGTACAATCACGATGATGTGAATATAATTGAGACCCTGAATCTAGGATTGAGAGATGGCAAATTTTCTAGTTTGTTGTGTGAAACAGCATTATCTGCATGACGCATTAACTTCGTTACATGTACATTATAGATACAGCATGCTTCTCCTTCTGTGCATATGTTGAACATGGTTCAGTGACAACCTCTTTGCATACTTCCAAAGGAAAAGGATAAATGATAGCTAAAAACCATTTATGCTGTTGTTAGCATTTGTGCGGCATTTCTCAGCCAACCTGCATTTCATTACAGGGGATCTTGGTCAGAGTTTTGATTCAAACAAGACACTCACACATTATG</genome_strand>
        <mrna_strand>TATTATAACTATACTTCTGGTTACATCCACCACTGCAATATCAAAAATTTGAAT..................................................................................................................TTCCCTACCAAATACTACTATAAGATTGGGATTGGACATATATCACGAACCTTCTGGTTCACAACTCCTCCAGAAGTCGGCCCTGATGTACCCTATACATTTGGTCTTATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCTTGGTCAGAGTTTTGATTCAAACAAGACACTCACACATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747705" ref_strand="+" ref_description="SGN-E747705 [GI|5360726]">
      <seq>gtagagagaagtactgcttatcaaccttggatttggacagcaggaaatcatgagttagattttgctcctgaaattggggaaacaaaaccatttaagccctacactcatcggtatcatgtcccattcagagcatcagacagcacatctccactttggtattcaatcaagcgagcttcagcgtatatcatagttttatcctcatattcagcatatggcaaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="24622" stop="25949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24922" g_stop="24996" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24997" i_stop="25501" i_length="505">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25502" g_stop="25640" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="214" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25641" i_stop="25910" i_length="270">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25911" g_stop="25919" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="223" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E747705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24922" e_stop="24996"/>
          <exon e_start="25502" e_stop="25640"/>
          <exon e_start="25911" e_stop="25919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGAGAAGTACTGCTTATCAACCTTGGATTTGGACAGCAGGAAATCATGAGTTAGATTTTGCTCCTGAAATTGTAAGTGATTCCATACTTTTTCGCTTATTGCTCAAAATTTGTTTCTTGTGTATTTCATGGATGCTTTAACCTAATTTTTTGAGCTATATGAGCTTTATTAATGCATTTCTTGACCTTCAGCCGATTGAGAAGAAGCTGTGTTAAAACTCTTTTCCTTCAATGTATGAACAGAAAGCATAGTTACTTGCATGAATTCTACAGTTGTACAGAAAGCTGATATCTCTCTCTGTTCCAACAAAAAAATAGATAAACATTTCCTCAGCTTTGCAAAGGAAGTTTAACGAGATTCATCTTGCATGATAAAAATGACTATATTTAGAGAGCTTAATAATGAGCAAGTATGTATTCTTTAGAGAGAACTAGTGTGGTTATAGAGTTTATTGATTGAACTCCACTGCAAAAAAGACAATTTGCTTGTGCTTTTCCATTCCTTCAATAGTAATGTGCTAGATTTTAGATGGTTTTGCATGGAATTTTGATGAATATATTCTGATACTGCCTGCAGGGGGAAACAAAACCATTTAAGCCCTACACTCATCGGTATCATGTCCCATTCAGAGCATCAGACAGCACATCTCCACTTTGGTATTCAATCAAGCGAGCTTCAGCGTATATCATAGTTTTATCCTCATATTCAGCATATGGTAAGGATACAGAATTCTTGTGAATGATACTTAGCATTGAGTTATGAACTGGTTTATGCTTTCCCTTTTCCTCTTCTTTAGCGTGGACATAGAACTTAGAAGTACTCGGCCAGAAAATGTCATCTACAGTCTGTTACTTATCCAGTTCTTGAAGAATTTAGAAGTCGTTAAGTAGTAATACCAAAAATTTCAGTCTACAGTCGATGTCAATATTTTGTTCGCATTCACCTTGCTCCCAATAAAGTTCCTTTTCTTTCCTCCATTTTTTAGGCAAATACA</genome_strand>
        <mrna_strand>GTAGAGAGAAGTACTGCTTATCAACCTTGGATTTGGACAGCAGGAAATCATGAGTTAGATTTTGCTCCTGAAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAACAAAACCATTTAAGCCCTACACTCATCGGTATCATGTCCCATTCAGAGCATCAGACAGCACATCTCCACTTTGGTATTCAATCAAGCGAGCTTCAGCGTATATCATAGTTTTATCCTCATATTCAGCATATG..............................................................................................................................................................................................................................................................................GCAAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350045" ref_strand="+" ref_description="SGN-E350045 [cTOS-4-B19]">
      <seq>gacagcacatctccactttggtattcaatcaagcgagcttcagcgtatatcatagttttatcctcatattcagcatatggcaaatacactcctcaatacaagtggcttgaggaagagctaccaaaggttaacaggactgagactccgtggctgattgttctagtacattccccatggtataacagctacaactatcactatatggaaggggaaaccatgagagtaatgtatgaaccatggtttgtacagtataaagtggatatggtttttgcaggtcatgttcatgcttatgaaagaacagaacggatttctaatgtggcctacaacgttgtcaatggagaatgcagtcctattaaagatcaatctgctccaatttatgtaacaatcggtgatggaggaaatcttgaaggcctagccaccaacatgacagagccacaaccagcttactctgcattccgcgaggccagttttggacatgccactcttgccatcaacaatagaactcatgcttattatagttggcatcgtaatcaagatggatatgctgtggaagctgataagatatgggttaacaaccgagtttggcatccagttgatgagtgcacaacagccaaatcatgatatgtgatatacacaaaatttcatccatcttttctttcctttttctcagtaacattgtgtacttgtcgacgaataaatattttattatttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="25262" stop="27037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25562" g_stop="25640" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25641" i_stop="25910" i_length="270">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25911" g_stop="26131" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="300" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26132" i_stop="26225" i_length="94">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26226" g_stop="26347" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="422" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26348" i_stop="26445" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26446" g_stop="26737" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="714" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E350045" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25562" e_stop="25640"/>
          <exon e_start="25911" e_stop="26131"/>
          <exon e_start="26226" e_stop="26347"/>
          <exon e_start="26446" e_stop="26737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGCACATCTCCACTTTGGTATTCAATCAAGCGAGCTTCAGCGTATATCATAGTTTTATCCTCATATTCAGCATATGGTAAGGATACAGAATTCTTGTGAATGATACTTAGCATTGAGTTATGAACTGGTTTATGCTTTCCCTTTTCCTCTTCTTTAGCGTGGACATAGAACTTAGAAGTACTCGGCCAGAAAATGTCATCTACAGTCTGTTACTTATCCAGTTCTTGAAGAATTTAGAAGTCGTTAAGTAGTAATACCAAAAATTTCAGTCTACAGTCGATGTCAATATTTTGTTCGCATTCACCTTGCTCCCAATAAAGTTCCTTTTCTTTCCTCCATTTTTTAGGCAAATACACTCCTCAATACAAGTGGCTTGAGGAAGAGCTACCAAAGGTTAACAGGACTGAGACTCCGTGGCTGATTGTTCTAGTACATTCCCCATGGTATAACAGCTACAACTATCACTATATGGAAGGGGAAACCATGAGAGTAATGTATGAACCATGGTTTGTACAGTATAAAGTGGATATGGTTTTTGCAGGTCATGTTCATGCTTATGAAAGAACAGTATGTACAACTCGATCATCCAGTTCTCTGTAGCTTATGTGAAGAATCATAGTTTCATCTGTCATAGAAAATGTAAGCTTTTATTATGTTTCAGGAACGGATTTCTAATGTGGCCTACAACGTTGTCAATGGAGAATGCAGTCCTATTAAAGATCAATCTGCTCCAATTTATGTAACAATCGGTGATGGAGGAAATCTTGAAGGCCTAGCCACCAAGTAAGATAATCTAAGTCTAGAAAGTTGTTTTATGTGTTGTGGTTGGCGTTTCTGTGAGACAACTCAACTAATTAGATATCTTGTAACACTAATTTCAGCATGACAGAGCCACAACCAGCTTACTCTGCATTCCGCGAGGCCAGTTTTGGACATGCCACTCTTGCCATCAACAATAGAACTCATGCTTATTATAGTTGGCATCGTAATCAAGATGGATATGCTGTGGAAGCTGATAAGATATGGGTTAACAACCGAGTTTGGCATCCAGTTGATGAGTGCACAACAGCCAAATCATGATATGTGATATACACAAAATTTCATCCATCTTTTCTTTCCTTTTCCTCAGTAACATTGTGTACTTGTCGACGAATAAATATTTTATTATTTCAA</genome_strand>
        <mrna_strand>GACAGCACATCTCCACTTTGGTATTCAATCAAGCGAGCTTCAGCGTATATCATAGTTTTATCCTCATATTCAGCATATG..............................................................................................................................................................................................................................................................................GCAAATACACTCCTCAATACAAGTGGCTTGAGGAAGAGCTACCAAAGGTTAACAGGACTGAGACTCCGTGGCTGATTGTTCTAGTACATTCCCCATGGTATAACAGCTACAACTATCACTATATGGAAGGGGAAACCATGAGAGTAATGTATGAACCATGGTTTGTACAGTATAAAGTGGATATGGTTTTTGCAGGTCATGTTCATGCTTATGAAAGAACA..............................................................................................GAACGGATTTCTAATGTGGCCTACAACGTTGTCAATGGAGAATGCAGTCCTATTAAAGATCAATCTGCTCCAATTTATGTAACAATCGGTGATGGAGGAAATCTTGAAGGCCTAGCCACCAA..................................................................................................CATGACAGAGCCACAACCAGCTTACTCTGCATTCCGCGAGGCCAGTTTTGGACATGCCACTCTTGCCATCAACAATAGAACTCATGCTTATTATAGTTGGCATCGTAATCAAGATGGATATGCTGTGGAAGCTGATAAGATATGGGTTAACAACCGAGTTTGGCATCCAGTTGATGAGTGCACAACAGCCAAATCATGATATGTGATATACACAAAATTTCATCCATCTTTTCTTTCCTTTTTCTCAGTAACATTGTGTACTTGTCGACGAATAAATATTTTATTATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349054" ref_strand="+" ref_description="SGN-E349054 [cTOS-2-A10]">
      <seq>gacagcacatctccactttggtattcaatcaagcgagcttcagcgtatatcatagttttatcctcatattcagcatatggcaaatacactcctcaatacaagtggcttgaggaagagctaccaaaggttaacaggactgagactccgtggctgattgttctagtacattccccatggtataacagctacaactatcactatatggaaggggaaaccatgagagtaatgtatgaaccatggtttgtacagtataaagtggatatggtttttgcaggtcatgttcatgcttatgaaagaacagaacggatttctaatgtggcctacaacgttgtcaatggagaatgcagtcctattaaagatcaatctgctccaatttatgtaacaatcggtgatggaggaaatcttgaaggcctagccaccaacatgacagagccacaaccagcttactctgcattccgcgaggccagttttggacatgccactcttgccatcaacaatagaactcatgcttattatagttggcatcgtaatcaagatggatatgctgtggaagctgataagatatgggttacaaccgagtttggcatccagttgatgagtgcacaacagccaaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="25262" stop="26943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25562" g_stop="25640" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25641" i_stop="25910" i_length="270">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25911" g_stop="26131" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="300" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26132" i_stop="26225" i_length="94">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26226" g_stop="26347" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="422" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26348" i_stop="26445" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26446" g_stop="26643" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="619" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E349054" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25562" e_stop="25640"/>
          <exon e_start="25911" e_stop="26131"/>
          <exon e_start="26226" e_stop="26347"/>
          <exon e_start="26446" e_stop="26643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGCACATCTCCACTTTGGTATTCAATCAAGCGAGCTTCAGCGTATATCATAGTTTTATCCTCATATTCAGCATATGGTAAGGATACAGAATTCTTGTGAATGATACTTAGCATTGAGTTATGAACTGGTTTATGCTTTCCCTTTTCCTCTTCTTTAGCGTGGACATAGAACTTAGAAGTACTCGGCCAGAAAATGTCATCTACAGTCTGTTACTTATCCAGTTCTTGAAGAATTTAGAAGTCGTTAAGTAGTAATACCAAAAATTTCAGTCTACAGTCGATGTCAATATTTTGTTCGCATTCACCTTGCTCCCAATAAAGTTCCTTTTCTTTCCTCCATTTTTTAGGCAAATACACTCCTCAATACAAGTGGCTTGAGGAAGAGCTACCAAAGGTTAACAGGACTGAGACTCCGTGGCTGATTGTTCTAGTACATTCCCCATGGTATAACAGCTACAACTATCACTATATGGAAGGGGAAACCATGAGAGTAATGTATGAACCATGGTTTGTACAGTATAAAGTGGATATGGTTTTTGCAGGTCATGTTCATGCTTATGAAAGAACAGTATGTACAACTCGATCATCCAGTTCTCTGTAGCTTATGTGAAGAATCATAGTTTCATCTGTCATAGAAAATGTAAGCTTTTATTATGTTTCAGGAACGGATTTCTAATGTGGCCTACAACGTTGTCAATGGAGAATGCAGTCCTATTAAAGATCAATCTGCTCCAATTTATGTAACAATCGGTGATGGAGGAAATCTTGAAGGCCTAGCCACCAAGTAAGATAATCTAAGTCTAGAAAGTTGTTTTATGTGTTGTGGTTGGCGTTTCTGTGAGACAACTCAACTAATTAGATATCTTGTAACACTAATTTCAGCATGACAGAGCCACAACCAGCTTACTCTGCATTCCGCGAGGCCAGTTTTGGACATGCCACTCTTGCCATCAACAATAGAACTCATGCTTATTATAGTTGGCATCGTAATCAAGATGGATATGCTGTGGAAGCTGATAAGATATGGGTTAACAACCGAGTTTGGCATCCAGTTGATGAGTGCACAACAGCCAAATCATG</genome_strand>
        <mrna_strand>GACAGCACATCTCCACTTTGGTATTCAATCAAGCGAGCTTCAGCGTATATCATAGTTTTATCCTCATATTCAGCATATG..............................................................................................................................................................................................................................................................................GCAAATACACTCCTCAATACAAGTGGCTTGAGGAAGAGCTACCAAAGGTTAACAGGACTGAGACTCCGTGGCTGATTGTTCTAGTACATTCCCCATGGTATAACAGCTACAACTATCACTATATGGAAGGGGAAACCATGAGAGTAATGTATGAACCATGGTTTGTACAGTATAAAGTGGATATGGTTTTTGCAGGTCATGTTCATGCTTATGAAAGAACA..............................................................................................GAACGGATTTCTAATGTGGCCTACAACGTTGTCAATGGAGAATGCAGTCCTATTAAAGATCAATCTGCTCCAATTTATGTAACAATCGGTGATGGAGGAAATCTTGAAGGCCTAGCCACCAA..................................................................................................CATGACAGAGCCACAACCAGCTTACTCTGCATTCCGCGAGGCCAGTTTTGGACATGCCACTCTTGCCATCAACAATAGAACTCATGCTTATTATAGTTGGCATCGTAATCAAGATGGATATGCTGTGGAAGCTGATAAGATATGGGTT-ACAACCGAGTTTGGCATCCAGTTGATGAGTGCACAACAGCCAAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357832" ref_strand="+" ref_description="SGN-E357832 [cTOS-24-G8]">
      <seq>gacagcacatctccactttggtattcaatcaagcgagcttcagcgtatatcatagttttatcctcatattcagcatatggcaaatacactcctcaatacaagtggcttgaggaagagctaccaaaggttaacaggactgagactccgtggctgattgttctagtacattccccatggtataacagctacaactatcactatatggaaggggaaaccatgagagtaatgtatgaaccatggtttgtacagtataaagtggatatggtttttgcaggtcatgttcatgcttatgaaagaacagaacggatttctaatgtggcctacaacgttgtcaatggagaatgcagtcctattaaagatcaatctgctccaatttatgtaacaatcggtgatggaggaaatcttgaaggcctagccaccaacatgacagagccacaaccagcttactctgcattccgcgaggccagttttggacatgccactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="25262" stop="26809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25562" g_stop="25640" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25641" i_stop="25910" i_length="270">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25911" g_stop="26131" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="300" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26132" i_stop="26225" i_length="94">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26226" g_stop="26347" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="422" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26348" i_stop="26445" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26446" g_stop="26509" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="486" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E357832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25562" e_stop="25640"/>
          <exon e_start="25911" e_stop="26131"/>
          <exon e_start="26226" e_stop="26347"/>
          <exon e_start="26446" e_stop="26509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGCACATCTCCACTTTGGTATTCAATCAAGCGAGCTTCAGCGTATATCATAGTTTTATCCTCATATTCAGCATATGGTAAGGATACAGAATTCTTGTGAATGATACTTAGCATTGAGTTATGAACTGGTTTATGCTTTCCCTTTTCCTCTTCTTTAGCGTGGACATAGAACTTAGAAGTACTCGGCCAGAAAATGTCATCTACAGTCTGTTACTTATCCAGTTCTTGAAGAATTTAGAAGTCGTTAAGTAGTAATACCAAAAATTTCAGTCTACAGTCGATGTCAATATTTTGTTCGCATTCACCTTGCTCCCAATAAAGTTCCTTTTCTTTCCTCCATTTTTTAGGCAAATACACTCCTCAATACAAGTGGCTTGAGGAAGAGCTACCAAAGGTTAACAGGACTGAGACTCCGTGGCTGATTGTTCTAGTACATTCCCCATGGTATAACAGCTACAACTATCACTATATGGAAGGGGAAACCATGAGAGTAATGTATGAACCATGGTTTGTACAGTATAAAGTGGATATGGTTTTTGCAGGTCATGTTCATGCTTATGAAAGAACAGTATGTACAACTCGATCATCCAGTTCTCTGTAGCTTATGTGAAGAATCATAGTTTCATCTGTCATAGAAAATGTAAGCTTTTATTATGTTTCAGGAACGGATTTCTAATGTGGCCTACAACGTTGTCAATGGAGAATGCAGTCCTATTAAAGATCAATCTGCTCCAATTTATGTAACAATCGGTGATGGAGGAAATCTTGAAGGCCTAGCCACCAAGTAAGATAATCTAAGTCTAGAAAGTTGTTTTATGTGTTGTGGTTGGCGTTTCTGTGAGACAACTCAACTAATTAGATATCTTGTAACACTAATTTCAGCATGACAGAGCCACAACCAGCTTACTCTGCATTCCGCGAGGCCAGTTTTGGACATGCCACTCTT</genome_strand>
        <mrna_strand>GACAGCACATCTCCACTTTGGTATTCAATCAAGCGAGCTTCAGCGTATATCATAGTTTTATCCTCATATTCAGCATATG..............................................................................................................................................................................................................................................................................GCAAATACACTCCTCAATACAAGTGGCTTGAGGAAGAGCTACCAAAGGTTAACAGGACTGAGACTCCGTGGCTGATTGTTCTAGTACATTCCCCATGGTATAACAGCTACAACTATCACTATATGGAAGGGGAAACCATGAGAGTAATGTATGAACCATGGTTTGTACAGTATAAAGTGGATATGGTTTTTGCAGGTCATGTTCATGCTTATGAAAGAACA..............................................................................................GAACGGATTTCTAATGTGGCCTACAACGTTGTCAATGGAGAATGCAGTCCTATTAAAGATCAATCTGCTCCAATTTATGTAACAATCGGTGATGGAGGAAATCTTGAAGGCCTAGCCACCAA..................................................................................................CATGACAGAGCCACAACCAGCTTACTCTGCATTCCGCGAGGCCAGTTTTGGACATGCCACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717831" ref_strand="+" ref_description="SGN-E717831 [FC02DE05]">
      <seq>ggccgaattgaggagacggaaactactcactttcacattcgccttagtcgtcacaattcactttttggcaactccgttttcagcccatcgccgagagaataaataataatttgaaaagcgcttcctccacgatctggttgccggaggaggcgattttttgaatgaagagttcacctgaattttctcgaaatggcggaatcgacgacaattcaaaggagctcgcctgaaggtgatgatcatgaactgaaggaggagaatattgagaagaaaaaggattttactgcaaatcctgagtttttcagttgtatgcttcagccagtgcctgccgattcagatccaaattacattggaatacgccggttcctcctccatcgcaaagctgaatccggtgtgcttcgtcgcaaggactggagaggcaatggaaaaggatacgtagcttatcgtaattatattagtaggccaaggaattgggagacattgcaaataccaagccgaccaagtaccccagggaacagtgggcgatggatgccttcagcaagtccagtttcccagttactcgagtcggatagctggaattccttaaaggatttacgaagtcccagtcaagcaagtcaagcattgagtcggactactagtttcagttcaaatgtgagtgacactgatgatcgtccacgtagaaggtcggaacctgcatattcctttgtggggatgcattgcatttttgatcaatgcaaggccatggttacggttataaagtttgggcatatgagttctgatctacttgcatatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="32311" stop="35891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32613" g_stop="33005" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="405" r_length="393" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33006" i_stop="33385" i_length="380">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33386" g_stop="33495" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="515" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33496" i_stop="33838" i_length="343">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.725" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33839" g_stop="33908" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="585" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33909" i_stop="35303" i_length="1395">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35304" g_stop="35460" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="742" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35461" i_stop="35542" i_length="82">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35543" g_stop="35591" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="791" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E717831" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32613" e_stop="33005"/>
          <exon e_start="33386" e_stop="33495"/>
          <exon e_start="33839" e_stop="33908"/>
          <exon e_start="35304" e_stop="35460"/>
          <exon e_start="35543" e_stop="35591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACGGAAACTACTCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAGGTACGCTTCTTTCACGCATATGTTAGAACACGTGATTATATGTAACTGCGTCATCGCTGTGCGTACGTGTGATTTCTCTTCAGAATCAAATGTTAAATACATCCGTGTTGTATGTATTCATTTTTTTTCCTTTTTGATTTACTTATTCATTAATGATATACATACTGGTCTCCTGGTTCAGTCGTATATAGGATCTCATTATGAACAATTCATTGCTTACTTGGCATGCATTTGTGCCACTTTCGGTTTATCTAGATTTATTTTTGTGGTTCGTTGTGTAAACTATATGCAACTTCATCCTACATTTTGATTGTAGGATCTTTGTATTTTGTTGCGATTAGCTATGCAGTGACTTCATAGAACTTTATTGCTTGTTTAAGGACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAGGTGGTTGAGATCTATCTTTATTTCTTCTAGTAGCATGCAACCCCTTTATTGCTTAGTGTGCTTGATTACGATTCATAATTGGTTATTTACTCCTTAACATTTGTGTAATTTTCATTTATCAAATCACTAAGAACTTTGTTAGAAAGAGATACTCAGTTGATTTTTGTTGCACGTTCCTTTTCTACCGGTTCAGAATTGTTTTGATATCATGGAACTTTGGGGAATGTAAAACTTTGTAACATGAAGCCTTTTATTTATTTATTTTATCTTTTTCCATGTCATTTGTTGAAGTTCGTACTCCATACAATCTGACATCAGGATAATTTACTGGTTGATGCATCAGTGGGCGATGGATGCCTTCAGCAAGTCCAGTTTCCCAGTTACTCGAGTCGGATAGCTGGAATTCCTTAAAGGTATGTGCATCTTTTGGTTGTGTTTGACTTGTCTTTTTCCATAACTTTAGCCTATGGTGCATCTGTTTATGAGGATTGATGAGTATTTGACTATCCATGACATGTCATTCAAAAAGTATTTGTATGATAGATAGTGTTTGCACCCTACAAATTAAGTTGAAGGGTGAAATTCATACAACTAAGTAGTTTGAATCACTGAGTTCTTTGGAAGCTGTTAACCTGCACCTCCTGAATGTTCTTTAGAATGAAACTTAAACAGTAAACCTATTAAATATTTAATATATTATAATTTCATAATGTTAATGTTTCGGATGTAAAAACTCATGTATAACAATGCTTTATTTCGAAATACGTGCTAAAAATATGATCTGAAATGCTAATAAAATGTACTTTTTATAATTATGGAATAAAAAGATTGTGGGAATTCATGTTTGTTTAAAGACTTAAGTTGACTTACTTTAAGTAAGAGCTCTCAGTTTATTTGAGATATATGTGGCAGATATGAATGGACTCTTTGTGGTTTTAATGATATGCTTTGTTGTTTCCTTTTGAAATCTGTCTAGCATTTTCTGGGTGACCCTTGATGTGTTAAATGATCTTTAATTCTTATTATTGGAATATCTCATGCTAATTGCTTGATACATTTGGTTTAAGTGCTGAGTAAGTTTATAAAACTACCTTTTTGTGCTCACTTATACATATGGTTTCAATACAACCTACGTACTGATTTTATTTATATATACACAAATGTTATAACCTAAAAAGGAAGGCTTAATGAATTTAAAGTTTGACCAGGGAATTCGGCCCTATTCTCTTCTTCTGTTGTGGAGAGGGTTAAGTAAGGGTGAACAAGATTGTTATGGTATGCTTGTTTGATTATATATCTTTCTAGTGTTCTCATTTTTAAAAATCTTCAAATGTTTATGCTAGCCATGTTTGACATTCTATATTTTTAGATGTACCTTAATGTCTCTGTAAGGTCCTTTTTGCAAATATATGTCTTGCACTTGATCTAGAGATGTTGAATAACAATCAACTCATGGATTTTTTGGGTTATTAATGTATACATAGTTAGATTCAGACTCTTGAGTTGAGTGTGTCATAATATACTCCAGCATGGAGATGATAAGAACATGCAATTGCTCGATTTGTTCAATCTTCTTGGTCTATAGCTCTTACATATATGAGCTTATTAGATTAACTTTTTTTTAGTGAAGATGAATGCTATGGTCTTTGCCAAATCAATTGGTCGAGTCTAGGTCCATACCAGCCATATACCAATGCTCTTGGTGTGTCACTCACTAGAAGATCAGAGTAGGTTTTTTCTGATCACTATAGTTGCATGAAAAATGATAATTCTCTTAGCACAATTTTCAGCATCTCATGTTTATGCAGGATTTACGAAGTCCCAGTCAAGCAAGTCAAGCATTGAGTCGGACTACTAGTTTCAGTTCAAATGTGAGTGACACTGATGATCGTCCACGTAGAAGGTCGGAACCTGCATATTCCTTTGTGGGGATGCATTGCATTTTTGATCAATGCAAGGCCATGGGTAATTGTTTTTTCAAATGGGAATCAGTCAATCTCTCACTTCATCTTGCTTAATTATGAACTTAACTAATCTAATTTTTCAGTTACGGTTATAAAGTTTGGGCATATGAGTTCTGATCTACTTGCATATGG</genome_strand>
        <mrna_strand>GAGACGGAAACTACTCACTTTCACATTCGCCTTAGTCGTCACAATTCACTTTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAAAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAG.......................................................................................................................................................................................................................................................................................................................................................TGGGCGATGGATGCCTTCAGCAAGTCCAGTTTCCCAGTTACTCGAGTCGGATAGCTGGAATTCCTTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACGAAGTCCCAGTCAAGCAAGTCAAGCATTGAGTCGGACTACTAGTTTCAGTTCAAATGTGAGTGACACTGATGATCGTCCACGTAGAAGGTCGGAACCTGCATATTCCTTTGTGGGGATGCATTGCATTTTTGATCAATGCAAGGCCATGG..................................................................................TTACGGTTATAAAGTTTGGGCATATGAGTTCTGATCTACTTGCATATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709663" ref_strand="+" ref_description="SGN-E709663 [FA52CH10]">
      <seq>aaactactcaattgcacattcgccttagtcgtcacaattcacattttggcaactccgttttcagcccatcgccgagagaataaataataatttgaaaagcgcttcctccacgatctggttgccggaggaggcgattttttgaatgaagagttcacctgaattttctcgaaatggcggaatcgacgacaattcagaggagctcgcctgaaggtgatgatcatgaactgaaggaggagaatattgagaagaaaaaggattttactgcaaatcctgagtttttcagttgtatgcttcagccagtgcctgccgattcagatccaaattacattggaatacgccggttcctcctccatcgcaaagctgaatccggtgtgcttcgtcgcaaggactggagaggcaatggaaaaggatacgtagcttatcgtaattatattagtaggccaaggaattgggagacattgcaaataccaagccgaccaagtaccccagggaacagtgggcgatggatgccttcagcaagtccagtttcccagttactcgagtcggatagctggaattccttaaaggatttacgaagtcccagtcaagcaagtcaagcattgagtcggactactagtttcagttcaaatgtgagtgacactgatgatcgtccacgtagaaggtcggaacctgcatattcctttgtggggatgcattgcatttttgatcaatgcaaggccatggttaccgttataaagtttgggcatatgagttctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="32320" stop="35877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32620" g_stop="33005" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33006" i_stop="33385" i_length="380">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33386" g_stop="33495" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="496" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33496" i_stop="33838" i_length="343">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.725" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33839" g_stop="33908" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="566" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33909" i_stop="35303" i_length="1395">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35304" g_stop="35460" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="723" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35461" i_stop="35542" i_length="82">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35543" g_stop="35577" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="758" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E709663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32620" e_stop="33005"/>
          <exon e_start="33386" e_stop="33495"/>
          <exon e_start="33839" e_stop="33908"/>
          <exon e_start="35304" e_stop="35460"/>
          <exon e_start="35543" e_stop="35577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACTCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAGGTACGCTTCTTTCACGCATATGTTAGAACACGTGATTATATGTAACTGCGTCATCGCTGTGCGTACGTGTGATTTCTCTTCAGAATCAAATGTTAAATACATCCGTGTTGTATGTATTCATTTTTTTTCCTTTTTGATTTACTTATTCATTAATGATATACATACTGGTCTCCTGGTTCAGTCGTATATAGGATCTCATTATGAACAATTCATTGCTTACTTGGCATGCATTTGTGCCACTTTCGGTTTATCTAGATTTATTTTTGTGGTTCGTTGTGTAAACTATATGCAACTTCATCCTACATTTTGATTGTAGGATCTTTGTATTTTGTTGCGATTAGCTATGCAGTGACTTCATAGAACTTTATTGCTTGTTTAAGGACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAGGTGGTTGAGATCTATCTTTATTTCTTCTAGTAGCATGCAACCCCTTTATTGCTTAGTGTGCTTGATTACGATTCATAATTGGTTATTTACTCCTTAACATTTGTGTAATTTTCATTTATCAAATCACTAAGAACTTTGTTAGAAAGAGATACTCAGTTGATTTTTGTTGCACGTTCCTTTTCTACCGGTTCAGAATTGTTTTGATATCATGGAACTTTGGGGAATGTAAAACTTTGTAACATGAAGCCTTTTATTTATTTATTTTATCTTTTTCCATGTCATTTGTTGAAGTTCGTACTCCATACAATCTGACATCAGGATAATTTACTGGTTGATGCATCAGTGGGCGATGGATGCCTTCAGCAAGTCCAGTTTCCCAGTTACTCGAGTCGGATAGCTGGAATTCCTTAAAGGTATGTGCATCTTTTGGTTGTGTTTGACTTGTCTTTTTCCATAACTTTAGCCTATGGTGCATCTGTTTATGAGGATTGATGAGTATTTGACTATCCATGACATGTCATTCAAAAAGTATTTGTATGATAGATAGTGTTTGCACCCTACAAATTAAGTTGAAGGGTGAAATTCATACAACTAAGTAGTTTGAATCACTGAGTTCTTTGGAAGCTGTTAACCTGCACCTCCTGAATGTTCTTTAGAATGAAACTTAAACAGTAAACCTATTAAATATTTAATATATTATAATTTCATAATGTTAATGTTTCGGATGTAAAAACTCATGTATAACAATGCTTTATTTCGAAATACGTGCTAAAAATATGATCTGAAATGCTAATAAAATGTACTTTTTATAATTATGGAATAAAAAGATTGTGGGAATTCATGTTTGTTTAAAGACTTAAGTTGACTTACTTTAAGTAAGAGCTCTCAGTTTATTTGAGATATATGTGGCAGATATGAATGGACTCTTTGTGGTTTTAATGATATGCTTTGTTGTTTCCTTTTGAAATCTGTCTAGCATTTTCTGGGTGACCCTTGATGTGTTAAATGATCTTTAATTCTTATTATTGGAATATCTCATGCTAATTGCTTGATACATTTGGTTTAAGTGCTGAGTAAGTTTATAAAACTACCTTTTTGTGCTCACTTATACATATGGTTTCAATACAACCTACGTACTGATTTTATTTATATATACACAAATGTTATAACCTAAAAAGGAAGGCTTAATGAATTTAAAGTTTGACCAGGGAATTCGGCCCTATTCTCTTCTTCTGTTGTGGAGAGGGTTAAGTAAGGGTGAACAAGATTGTTATGGTATGCTTGTTTGATTATATATCTTTCTAGTGTTCTCATTTTTAAAAATCTTCAAATGTTTATGCTAGCCATGTTTGACATTCTATATTTTTAGATGTACCTTAATGTCTCTGTAAGGTCCTTTTTGCAAATATATGTCTTGCACTTGATCTAGAGATGTTGAATAACAATCAACTCATGGATTTTTTGGGTTATTAATGTATACATAGTTAGATTCAGACTCTTGAGTTGAGTGTGTCATAATATACTCCAGCATGGAGATGATAAGAACATGCAATTGCTCGATTTGTTCAATCTTCTTGGTCTATAGCTCTTACATATATGAGCTTATTAGATTAACTTTTTTTTAGTGAAGATGAATGCTATGGTCTTTGCCAAATCAATTGGTCGAGTCTAGGTCCATACCAGCCATATACCAATGCTCTTGGTGTGTCACTCACTAGAAGATCAGAGTAGGTTTTTTCTGATCACTATAGTTGCATGAAAAATGATAATTCTCTTAGCACAATTTTCAGCATCTCATGTTTATGCAGGATTTACGAAGTCCCAGTCAAGCAAGTCAAGCATTGAGTCGGACTACTAGTTTCAGTTCAAATGTGAGTGACACTGATGATCGTCCACGTAGAAGGTCGGAACCTGCATATTCCTTTGTGGGGATGCATTGCATTTTTGATCAATGCAAGGCCATGGGTAATTGTTTTTTCAAATGGGAATCAGTCAATCTCTCACTTCATCTTGCTTAATTATGAACTTAACTAATCTAATTTTTCAGTTACGGTTATAAAGTTTGGGCATATGAGTTCTGAT</genome_strand>
        <mrna_strand>AAACTACTCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAG.......................................................................................................................................................................................................................................................................................................................................................TGGGCGATGGATGCCTTCAGCAAGTCCAGTTTCCCAGTTACTCGAGTCGGATAGCTGGAATTCCTTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACGAAGTCCCAGTCAAGCAAGTCAAGCATTGAGTCGGACTACTAGTTTCAGTTCAAATGTGAGTGACACTGATGATCGTCCACGTAGAAGGTCGGAACCTGCATATTCCTTTGTGGGGATGCATTGCATTTTTGATCAATGCAAGGCCATGG..................................................................................TTACCGTTATAAAGTTTGGGCATATGAGTTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298447" ref_strand="+" ref_description="SGN-E298447 [cLET-41-E5]">
      <seq>ctactcaattgcacattcgccttagtcgtcacaattcacattttggcaactccgttttcagcccatcgccgagagaataaataataatttgaaaagcgcttcctccacgatctggttgccggaggaggcgattttttgaatgaagagttcacctgaattttctcgaaatggcggaatcgacgacaattcagaggagctcgcctgaaggtgatgatcatgaactgaaggaggagaatattgagaagaaaaaggattttactgcaaatcctgagtttttcagttgtatgcttcagccagtgcctgccgattcagatccaaattacattggaatacgccggttcctcctccatcgcaaagctgaatccggtgtgcttcgtcgcaaggactggagaggcaatggaaaaggatacgtagcttatcgtaattatattagtaggccaaggaattgggagacattgcaaataccaagccgaccaagtaccccatggaacagtgggcgatggatgccttcagcaagtccagtttcccagttactcgagtcggatagctggaattcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="32323" stop="34204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32623" g_stop="33005" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33006" i_stop="33385" i_length="380">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33386" g_stop="33495" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="493" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33496" i_stop="33838" i_length="343">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.725" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33839" g_stop="33904" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="559" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E298447" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32623" e_stop="33005"/>
          <exon e_start="33386" e_stop="33495"/>
          <exon e_start="33839" e_stop="33904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAGGTACGCTTCTTTCACGCATATGTTAGAACACGTGATTATATGTAACTGCGTCATCGCTGTGCGTACGTGTGATTTCTCTTCAGAATCAAATGTTAAATACATCCGTGTTGTATGTATTCATTTTTTTTCCTTTTTGATTTACTTATTCATTAATGATATACATACTGGTCTCCTGGTTCAGTCGTATATAGGATCTCATTATGAACAATTCATTGCTTACTTGGCATGCATTTGTGCCACTTTCGGTTTATCTAGATTTATTTTTGTGGTTCGTTGTGTAAACTATATGCAACTTCATCCTACATTTTGATTGTAGGATCTTTGTATTTTGTTGCGATTAGCTATGCAGTGACTTCATAGAACTTTATTGCTTGTTTAAGGACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAGGTGGTTGAGATCTATCTTTATTTCTTCTAGTAGCATGCAACCCCTTTATTGCTTAGTGTGCTTGATTACGATTCATAATTGGTTATTTACTCCTTAACATTTGTGTAATTTTCATTTATCAAATCACTAAGAACTTTGTTAGAAAGAGATACTCAGTTGATTTTTGTTGCACGTTCCTTTTCTACCGGTTCAGAATTGTTTTGATATCATGGAACTTTGGGGAATGTAAAACTTTGTAACATGAAGCCTTTTATTTATTTATTTTATCTTTTTCCATGTCATTTGTTGAAGTTCGTACTCCATACAATCTGACATCAGGATAATTTACTGGTTGATGCATCAGTGGGCGATGGATGCCTTCAGCAAGTCCAGTTTCCCAGTTACTCGAGTCGGATAGCTGGAATTCCTT</genome_strand>
        <mrna_strand>CTACTCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCATGGAACAG.......................................................................................................................................................................................................................................................................................................................................................TGGGCGATGGATGCCTTCAGCAAGTCCAGTTTCCCAGTTACTCGAGTCGGATAGCTGGAATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236069" ref_strand="+" ref_description="SGN-E236069 [cLED-16-D14]">
      <seq>ctcaattgcacattcgccttagtcgtcacaattcacattttggcaactccgttttcagcccatcgccgagagaataaataataatttgaaaagcgcttcctccacgatctggttgccggaggaggcgattttttgaatgaagagttcacctgaattttctcgaaatggcggaatcgacgacaattcagaggagctcgcctgaaggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="32326" stop="33135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32626" g_stop="32835" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E236069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32626" e_stop="32835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATG</genome_strand>
        <mrna_strand>CTCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338963" ref_strand="+" ref_description="SGN-E338963 [cTOF-6-E15]">
      <seq>tcaattgcacattcgccttagtcgtcacaattcacattttggcaactccgttttcagcccatcgccgagagaataaataataatttgaaaagcgcttcctccacgatctggttgccggaggaggcgattttttgaatgaagagttcacctgaattttctcgaaatggcggaatcgacgacaattcagaggagctcgcctgaaggtgatgatcatgaactgaaggaggagaatattgagaagaaaaaggattttactgcaaatcctgagtttttcagttgtatgcttcagccagtgcctgccgattcagatccaaattacattggaatacgccggttcctcctccatcgcaaagctgaatccggtgtgcttcgtcgcaaggactggagaggcaatggaaaaggatacgtagcttatcgtaattatattagtaggccaaggaattgggagacattgcaaataccaagccgaccaagtaccccagggaacagtgggcgatggatgccttcagcaagtccagtttcccagttactcgagtcggatagctggaattccttaaaggatttacgaagtcccagtcaagcaagtcaagcattgagtcggactactagttttcagttcaaatgtgagtgacactgaatgatcgtcccacgtagaaggtcggaacctgcatattcctttgtggggatgcattgcattttttgatcaatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="32327" stop="35753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32627" g_stop="33005" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33006" i_stop="33385" i_length="380">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33386" g_stop="33495" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="489" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33496" i_stop="33838" i_length="343">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.725" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33839" g_stop="33908" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="559" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33909" i_stop="35303" i_length="1395">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35304" g_stop="35453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="713" r_length="154" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E338963" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32627" e_stop="33005"/>
          <exon e_start="33386" e_stop="33495"/>
          <exon e_start="33839" e_stop="33908"/>
          <exon e_start="35304" e_stop="35453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAGGTACGCTTCTTTCACGCATATGTTAGAACACGTGATTATATGTAACTGCGTCATCGCTGTGCGTACGTGTGATTTCTCTTCAGAATCAAATGTTAAATACATCCGTGTTGTATGTATTCATTTTTTTTCCTTTTTGATTTACTTATTCATTAATGATATACATACTGGTCTCCTGGTTCAGTCGTATATAGGATCTCATTATGAACAATTCATTGCTTACTTGGCATGCATTTGTGCCACTTTCGGTTTATCTAGATTTATTTTTGTGGTTCGTTGTGTAAACTATATGCAACTTCATCCTACATTTTGATTGTAGGATCTTTGTATTTTGTTGCGATTAGCTATGCAGTGACTTCATAGAACTTTATTGCTTGTTTAAGGACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAGGTGGTTGAGATCTATCTTTATTTCTTCTAGTAGCATGCAACCCCTTTATTGCTTAGTGTGCTTGATTACGATTCATAATTGGTTATTTACTCCTTAACATTTGTGTAATTTTCATTTATCAAATCACTAAGAACTTTGTTAGAAAGAGATACTCAGTTGATTTTTGTTGCACGTTCCTTTTCTACCGGTTCAGAATTGTTTTGATATCATGGAACTTTGGGGAATGTAAAACTTTGTAACATGAAGCCTTTTATTTATTTATTTTATCTTTTTCCATGTCATTTGTTGAAGTTCGTACTCCATACAATCTGACATCAGGATAATTTACTGGTTGATGCATCAGTGGGCGATGGATGCCTTCAGCAAGTCCAGTTTCCCAGTTACTCGAGTCGGATAGCTGGAATTCCTTAAAGGTATGTGCATCTTTTGGTTGTGTTTGACTTGTCTTTTTCCATAACTTTAGCCTATGGTGCATCTGTTTATGAGGATTGATGAGTATTTGACTATCCATGACATGTCATTCAAAAAGTATTTGTATGATAGATAGTGTTTGCACCCTACAAATTAAGTTGAAGGGTGAAATTCATACAACTAAGTAGTTTGAATCACTGAGTTCTTTGGAAGCTGTTAACCTGCACCTCCTGAATGTTCTTTAGAATGAAACTTAAACAGTAAACCTATTAAATATTTAATATATTATAATTTCATAATGTTAATGTTTCGGATGTAAAAACTCATGTATAACAATGCTTTATTTCGAAATACGTGCTAAAAATATGATCTGAAATGCTAATAAAATGTACTTTTTATAATTATGGAATAAAAAGATTGTGGGAATTCATGTTTGTTTAAAGACTTAAGTTGACTTACTTTAAGTAAGAGCTCTCAGTTTATTTGAGATATATGTGGCAGATATGAATGGACTCTTTGTGGTTTTAATGATATGCTTTGTTGTTTCCTTTTGAAATCTGTCTAGCATTTTCTGGGTGACCCTTGATGTGTTAAATGATCTTTAATTCTTATTATTGGAATATCTCATGCTAATTGCTTGATACATTTGGTTTAAGTGCTGAGTAAGTTTATAAAACTACCTTTTTGTGCTCACTTATACATATGGTTTCAATACAACCTACGTACTGATTTTATTTATATATACACAAATGTTATAACCTAAAAAGGAAGGCTTAATGAATTTAAAGTTTGACCAGGGAATTCGGCCCTATTCTCTTCTTCTGTTGTGGAGAGGGTTAAGTAAGGGTGAACAAGATTGTTATGGTATGCTTGTTTGATTATATATCTTTCTAGTGTTCTCATTTTTAAAAATCTTCAAATGTTTATGCTAGCCATGTTTGACATTCTATATTTTTAGATGTACCTTAATGTCTCTGTAAGGTCCTTTTTGCAAATATATGTCTTGCACTTGATCTAGAGATGTTGAATAACAATCAACTCATGGATTTTTTGGGTTATTAATGTATACATAGTTAGATTCAGACTCTTGAGTTGAGTGTGTCATAATATACTCCAGCATGGAGATGATAAGAACATGCAATTGCTCGATTTGTTCAATCTTCTTGGTCTATAGCTCTTACATATATGAGCTTATTAGATTAACTTTTTTTTAGTGAAGATGAATGCTATGGTCTTTGCCAAATCAATTGGTCGAGTCTAGGTCCATACCAGCCATATACCAATGCTCTTGGTGTGTCACTCACTAGAAGATCAGAGTAGGTTTTTTCTGATCACTATAGTTGCATGAAAAATGATAATTCTCTTAGCACAATTTTCAGCATCTCATGTTTATGCAGGATTTACGAAGTCCCAGTCAAGCAAGTCAAGCATTGAGTCGGACTACTAG-TTTCAGTTCAAATGTGAGTGACACTG-ATGATCGT-CCACGTAGAAGGTCGGAACCTGCATATTCCTTTGTGGGGATGCATTGCA-TTTTTGATCAATGCAAG</genome_strand>
        <mrna_strand>TCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAG.......................................................................................................................................................................................................................................................................................................................................................TGGGCGATGGATGCCTTCAGCAAGTCCAGTTTCCCAGTTACTCGAGTCGGATAGCTGGAATTCCTTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACGAAGTCCCAGTCAAGCAAGTCAAGCATTGAGTCGGACTACTAGTTTTCAGTTCAAATGTGAGTGACACTGAATGATCGTCCCACGTAGAAGGTCGGAACCTGCATATTCCTTTGTGGGGATGCATTGCATTTTTTGATCAATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337352" ref_strand="+" ref_description="SGN-E337352 [cTOE-18-K10]">
      <seq>tcaattgcacattcgccttagtcgtcacaattcacattttggcaactccgttttcagcccatcgccgagagaataaataataatttgaaaagcgcttcctccacgatctggttgccggaggaggcgattttttgaatgaagagttcacctgaattttctcgaaatggcggaatcgacgacaattcagaggagctcgcctgaaggtgatgatcatgaactgaaggaggagaatattgagaagaaaaaggattttactgcaaatcctgagtttttcagttgtatgcttcagccagtgcctgccgattcagatccaaattacattggaatacgccggttcctcctccatcgcaaagctgaatccggtgtgcttcgtcgcaaggactggagaggcaatggaaaaggatacgtagcttatcgtaattatattagtaggccaaggaattgggagacattgcaaataccaagccgaccaagtaccccagggaacaggtggttgagatctatctttatttcttctagtagcatgcaacccctttattgcttaatgtgcttgattacgattcataattggttatttactccttaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="32327" stop="33895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32627" g_stop="33005" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33006" i_stop="33385" i_length="380">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33386" g_stop="33595" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="589" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E337352" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32627" e_stop="33005"/>
          <exon e_start="33386" e_stop="33595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAGGTACGCTTCTTTCACGCATATGTTAGAACACGTGATTATATGTAACTGCGTCATCGCTGTGCGTACGTGTGATTTCTCTTCAGAATCAAATGTTAAATACATCCGTGTTGTATGTATTCATTTTTTTTCCTTTTTGATTTACTTATTCATTAATGATATACATACTGGTCTCCTGGTTCAGTCGTATATAGGATCTCATTATGAACAATTCATTGCTTACTTGGCATGCATTTGTGCCACTTTCGGTTTATCTAGATTTATTTTTGTGGTTCGTTGTGTAAACTATATGCAACTTCATCCTACATTTTGATTGTAGGATCTTTGTATTTTGTTGCGATTAGCTATGCAGTGACTTCATAGAACTTTATTGCTTGTTTAAGGACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAGGTGGTTGAGATCTATCTTTATTTCTTCTAGTAGCATGCAACCCCTTTATTGCTTAGTGTGCTTGATTACGATTCATAATTGGTTATTTACTCCTTAACAT</genome_strand>
        <mrna_strand>TCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAGGTGGTTGAGATCTATCTTTATTTCTTCTAGTAGCATGCAACCCCTTTATTGCTTAATGTGCTTGATTACGATTCATAATTGGTTATTTACTCCTTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341248" ref_strand="+" ref_description="SGN-E341248 [cTOE-22-K4]">
      <seq>tcaattgcacattcgccttagtcgtcacaattcacattttggcaactccgttttcagcccatcgccgagagaataaataataatttgaaaagcgcttcctccacgatctggttgccggaggaggcgattttttgaatgaagagttcacctgaattttctcgaaatggcggaatcgacgacaattcagaggagctcgcctgaaggtgatgatcatgaactgaaggaggagaatattgagaagaaaaaggattttactgcaaatcctgagtttttcagttgtatgcttcagccagtgcctgccgattcagatccaaattacattggaatacgccggttcctcctccatcgcaaagctgaatccggtgtgcttcgtcgcaaggactggagaggcaatggaaaaggatacgtagcttatcgtaattatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="32327" stop="33733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32627" g_stop="33005" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33006" i_stop="33385" i_length="380">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33386" g_stop="33433" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="427" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E341248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32627" e_stop="33005"/>
          <exon e_start="33386" e_stop="33433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAGGTACGCTTCTTTCACGCATATGTTAGAACACGTGATTATATGTAACTGCGTCATCGCTGTGCGTACGTGTGATTTCTCTTCAGAATCAAATGTTAAATACATCCGTGTTGTATGTATTCATTTTTTTTCCTTTTTGATTTACTTATTCATTAATGATATACATACTGGTCTCCTGGTTCAGTCGTATATAGGATCTCATTATGAACAATTCATTGCTTACTTGGCATGCATTTGTGCCACTTTCGGTTTATCTAGATTTATTTTTGTGGTTCGTTGTGTAAACTATATGCAACTTCATCCTACATTTTGATTGTAGGATCTTTGTATTTTGTTGCGATTAGCTATGCAGTGACTTCATAGAACTTTATTGCTTGTTTAAGGACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATT</genome_strand>
        <mrna_strand>TCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269830" ref_strand="+" ref_description="SGN-E269830 [cLEM-17-G8]">
      <seq>ctcctccatcgcaaagctgaatccggtgtgcttcgtcgcaaggactggagaggcaatggaaaaggatacgtagcttatcgtaattatattagtaggccaaggaattgggagacattgcaaataccaagccgaccaagtaccccagggaacagtgggcgatggatgccttcagcaagtccagtttcccagttactcgagtcggatagctggaattccttaaaggatttacgaagtcccagtcaagcaagtcaagcattgagtcggactactagtttcagttcaaatgtgagtgacactgatgatcgtccacgtagaaagtcggaacctgcatattcctttgtggggatgcattgcatttttgatcaatgcaaggccatggttacggttataaagtttgggcatatgagttctgatctacttgcatatggagcaaccgatggcagtttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="32664" stop="35913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32964" g_stop="33005" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33006" i_stop="33385" i_length="380">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33386" g_stop="33495" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="152" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33496" i_stop="33838" i_length="343">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.725" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33839" g_stop="33908" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="222" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33909" i_stop="35303" i_length="1395">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35304" g_stop="35460" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="379" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35461" i_stop="35542" i_length="82">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35543" g_stop="35613" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="450" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E269830" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32964" e_stop="33005"/>
          <exon e_start="33386" e_stop="33495"/>
          <exon e_start="33839" e_stop="33908"/>
          <exon e_start="35304" e_stop="35460"/>
          <exon e_start="35543" e_stop="35613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAGGTACGCTTCTTTCACGCATATGTTAGAACACGTGATTATATGTAACTGCGTCATCGCTGTGCGTACGTGTGATTTCTCTTCAGAATCAAATGTTAAATACATCCGTGTTGTATGTATTCATTTTTTTTCCTTTTTGATTTACTTATTCATTAATGATATACATACTGGTCTCCTGGTTCAGTCGTATATAGGATCTCATTATGAACAATTCATTGCTTACTTGGCATGCATTTGTGCCACTTTCGGTTTATCTAGATTTATTTTTGTGGTTCGTTGTGTAAACTATATGCAACTTCATCCTACATTTTGATTGTAGGATCTTTGTATTTTGTTGCGATTAGCTATGCAGTGACTTCATAGAACTTTATTGCTTGTTTAAGGACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAGGTGGTTGAGATCTATCTTTATTTCTTCTAGTAGCATGCAACCCCTTTATTGCTTAGTGTGCTTGATTACGATTCATAATTGGTTATTTACTCCTTAACATTTGTGTAATTTTCATTTATCAAATCACTAAGAACTTTGTTAGAAAGAGATACTCAGTTGATTTTTGTTGCACGTTCCTTTTCTACCGGTTCAGAATTGTTTTGATATCATGGAACTTTGGGGAATGTAAAACTTTGTAACATGAAGCCTTTTATTTATTTATTTTATCTTTTTCCATGTCATTTGTTGAAGTTCGTACTCCATACAATCTGACATCAGGATAATTTACTGGTTGATGCATCAGTGGGCGATGGATGCCTTCAGCAAGTCCAGTTTCCCAGTTACTCGAGTCGGATAGCTGGAATTCCTTAAAGGTATGTGCATCTTTTGGTTGTGTTTGACTTGTCTTTTTCCATAACTTTAGCCTATGGTGCATCTGTTTATGAGGATTGATGAGTATTTGACTATCCATGACATGTCATTCAAAAAGTATTTGTATGATAGATAGTGTTTGCACCCTACAAATTAAGTTGAAGGGTGAAATTCATACAACTAAGTAGTTTGAATCACTGAGTTCTTTGGAAGCTGTTAACCTGCACCTCCTGAATGTTCTTTAGAATGAAACTTAAACAGTAAACCTATTAAATATTTAATATATTATAATTTCATAATGTTAATGTTTCGGATGTAAAAACTCATGTATAACAATGCTTTATTTCGAAATACGTGCTAAAAATATGATCTGAAATGCTAATAAAATGTACTTTTTATAATTATGGAATAAAAAGATTGTGGGAATTCATGTTTGTTTAAAGACTTAAGTTGACTTACTTTAAGTAAGAGCTCTCAGTTTATTTGAGATATATGTGGCAGATATGAATGGACTCTTTGTGGTTTTAATGATATGCTTTGTTGTTTCCTTTTGAAATCTGTCTAGCATTTTCTGGGTGACCCTTGATGTGTTAAATGATCTTTAATTCTTATTATTGGAATATCTCATGCTAATTGCTTGATACATTTGGTTTAAGTGCTGAGTAAGTTTATAAAACTACCTTTTTGTGCTCACTTATACATATGGTTTCAATACAACCTACGTACTGATTTTATTTATATATACACAAATGTTATAACCTAAAAAGGAAGGCTTAATGAATTTAAAGTTTGACCAGGGAATTCGGCCCTATTCTCTTCTTCTGTTGTGGAGAGGGTTAAGTAAGGGTGAACAAGATTGTTATGGTATGCTTGTTTGATTATATATCTTTCTAGTGTTCTCATTTTTAAAAATCTTCAAATGTTTATGCTAGCCATGTTTGACATTCTATATTTTTAGATGTACCTTAATGTCTCTGTAAGGTCCTTTTTGCAAATATATGTCTTGCACTTGATCTAGAGATGTTGAATAACAATCAACTCATGGATTTTTTGGGTTATTAATGTATACATAGTTAGATTCAGACTCTTGAGTTGAGTGTGTCATAATATACTCCAGCATGGAGATGATAAGAACATGCAATTGCTCGATTTGTTCAATCTTCTTGGTCTATAGCTCTTACATATATGAGCTTATTAGATTAACTTTTTTTTAGTGAAGATGAATGCTATGGTCTTTGCCAAATCAATTGGTCGAGTCTAGGTCCATACCAGCCATATACCAATGCTCTTGGTGTGTCACTCACTAGAAGATCAGAGTAGGTTTTTTCTGATCACTATAGTTGCATGAAAAATGATAATTCTCTTAGCACAATTTTCAGCATCTCATGTTTATGCAGGATTTACGAAGTCCCAGTCAAGCAAGTCAAGCATTGAGTCGGACTACTAGTTTCAGTTCAAATGTGAGTGACACTGATGATCGTCCACGTAGAAGGTCGGAACCTGCATATTCCTTTGTGGGGATGCATTGCATTTTTGATCAATGCAAGGCCATGGGTAATTGTTTTTTCAAATGGGAATCAGTCAATCTCTCACTTCATCTTGCTTAATTATGAACTTAACTAATCTAATTTTTCAGTTACGGTTATAAAGTTTGGGCATATGAGTTCTGATCTACTTGCATATGGAGCAACCGATGGCAGTTTAACT</genome_strand>
        <mrna_strand>CTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAG.......................................................................................................................................................................................................................................................................................................................................................TGGGCGATGGATGCCTTCAGCAAGTCCAGTTTCCCAGTTACTCGAGTCGGATAGCTGGAATTCCTTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACGAAGTCCCAGTCAAGCAAGTCAAGCATTGAGTCGGACTACTAGTTTCAGTTCAAATGTGAGTGACACTGATGATCGTCCACGTAGAAAGTCGGAACCTGCATATTCCTTTGTGGGGATGCATTGCATTTTTGATCAATGCAAGGCCATGG..................................................................................TTACGGTTATAAAGTTTGGGCATATGAGTTCTGATCTACTTGCATATGGAGCAACCGATGGCAGTTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331999" ref_strand="+" ref_description="SGN-E331999 [cTOD-16-N15]">
      <seq>tggaattccttaaaggatttacgaagtcccagtcaagcaagtcaagcattgagtcggactactagtttcagttcaaatgtgagtgacactgatgatcgtccacgtagaaggtcggaacctgcatattcctttgtggggatgcattgcatttttgatcaatgcaaggccatggttacggttataaagtttgggcatatgagttctgatctacttgcatatggagcaaccgatggcagtttaactgtatgcagtgtctccatgcccccttcagtcattaagcagttaacagggcattcaaaagatgtcacaggttggattaactgattttgacttctccacaaacaatcagtacattgcatcatcttcaatgggataaactgtcagagtatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="33594" stop="38190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33894" g_stop="33908" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33909" i_stop="35303" i_length="1395">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35304" g_stop="35460" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="172" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35461" i_stop="35542" i_length="82">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35543" g_stop="35693" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="323" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35694" i_stop="37820" i_length="2127">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37821" g_stop="37890" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="393" r_length="70" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E331999" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33894" e_stop="33908"/>
          <exon e_start="35304" e_stop="35460"/>
          <exon e_start="35543" e_stop="35693"/>
          <exon e_start="37821" e_stop="37890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCCTTAAAGGTATGTGCATCTTTTGGTTGTGTTTGACTTGTCTTTTTCCATAACTTTAGCCTATGGTGCATCTGTTTATGAGGATTGATGAGTATTTGACTATCCATGACATGTCATTCAAAAAGTATTTGTATGATAGATAGTGTTTGCACCCTACAAATTAAGTTGAAGGGTGAAATTCATACAACTAAGTAGTTTGAATCACTGAGTTCTTTGGAAGCTGTTAACCTGCACCTCCTGAATGTTCTTTAGAATGAAACTTAAACAGTAAACCTATTAAATATTTAATATATTATAATTTCATAATGTTAATGTTTCGGATGTAAAAACTCATGTATAACAATGCTTTATTTCGAAATACGTGCTAAAAATATGATCTGAAATGCTAATAAAATGTACTTTTTATAATTATGGAATAAAAAGATTGTGGGAATTCATGTTTGTTTAAAGACTTAAGTTGACTTACTTTAAGTAAGAGCTCTCAGTTTATTTGAGATATATGTGGCAGATATGAATGGACTCTTTGTGGTTTTAATGATATGCTTTGTTGTTTCCTTTTGAAATCTGTCTAGCATTTTCTGGGTGACCCTTGATGTGTTAAATGATCTTTAATTCTTATTATTGGAATATCTCATGCTAATTGCTTGATACATTTGGTTTAAGTGCTGAGTAAGTTTATAAAACTACCTTTTTGTGCTCACTTATACATATGGTTTCAATACAACCTACGTACTGATTTTATTTATATATACACAAATGTTATAACCTAAAAAGGAAGGCTTAATGAATTTAAAGTTTGACCAGGGAATTCGGCCCTATTCTCTTCTTCTGTTGTGGAGAGGGTTAAGTAAGGGTGAACAAGATTGTTATGGTATGCTTGTTTGATTATATATCTTTCTAGTGTTCTCATTTTTAAAAATCTTCAAATGTTTATGCTAGCCATGTTTGACATTCTATATTTTTAGATGTACCTTAATGTCTCTGTAAGGTCCTTTTTGCAAATATATGTCTTGCACTTGATCTAGAGATGTTGAATAACAATCAACTCATGGATTTTTTGGGTTATTAATGTATACATAGTTAGATTCAGACTCTTGAGTTGAGTGTGTCATAATATACTCCAGCATGGAGATGATAAGAACATGCAATTGCTCGATTTGTTCAATCTTCTTGGTCTATAGCTCTTACATATATGAGCTTATTAGATTAACTTTTTTTTAGTGAAGATGAATGCTATGGTCTTTGCCAAATCAATTGGTCGAGTCTAGGTCCATACCAGCCATATACCAATGCTCTTGGTGTGTCACTCACTAGAAGATCAGAGTAGGTTTTTTCTGATCACTATAGTTGCATGAAAAATGATAATTCTCTTAGCACAATTTTCAGCATCTCATGTTTATGCAGGATTTACGAAGTCCCAGTCAAGCAAGTCAAGCATTGAGTCGGACTACTAGTTTCAGTTCAAATGTGAGTGACACTGATGATCGTCCACGTAGAAGGTCGGAACCTGCATATTCCTTTGTGGGGATGCATTGCATTTTTGATCAATGCAAGGCCATGGGTAATTGTTTTTTCAAATGGGAATCAGTCAATCTCTCACTTCATCTTGCTTAATTATGAACTTAACTAATCTAATTTTTCAGTTACGGTTATAAAGTTTGGGCATATGAGTTCTGATCTACTTGCATATGGAGCAACCGATGGCAGTTTAACTGTATGCAGTGTCTCCATGCCCCCTTCAGTCATTAAGCAGTTAACAGGGCATTCAAAAGATGTCACAGGTTGGATTAACTGGTATTGGTTCTGCAGTCTTAGTCTTTAAAATCGTACATATATCAAAGTTGTTTGTGTTATACTTTTCCTTTGTAAAAATGTATTAGAAATAGTGGCTTAAATCGGTATCAATGTTGTCAAAGGCAAAAGGTGAGAAAAGCACCAAAAACTATCGGGGTTTTAAGCTTAAATCTCAATTCAGGGCTTTGGTGAAAAAGGAACTGAAGAACTAAAAAAGGGCAGTCTGGTGCATTTGAACTCCCGCCATGTGTGGGGTCCAGAGAAGAACTAATATATAAAATGGGGAAAATAAATGATAAACACAAAAACATTATGGGTAGGAGAATTTTTAAAAAGGTAGAAATTTTAATTAATGAAGGACTGGTAGAAAAATTTATGTGGAAGAATTCAATTCCCTTAGATCTCTGATTCAGATGCAAATGTTAAGTTACTAATTCAGGAGATAGCATCTTGTGTTTCCTTATGAGTTCCTTGAAATCAACTAAAGTTTTTCAAAGATTGTTGGTTTGCTATTTGCTAAGGTGCACACCTAGGACCTCACCATAGCTGACGCACTGCCTAACCAATGTGAAGCTTCGCCTGCTTTGTATCACACTTTAGATTGGGGGTATGAGAATGGAGAAATAATTCTTCCAGTTGGATTATGTTTGTAGAAGTGACACAAGGTTTAACACAGAAATTGTTGTAAAAGTTCTGACCAGAAGCTATGTCCAGAATAGTCAGTTGACTTTTGCAATGTCCAAATGGAAATGGTTTTGTAAATTTCATGTCTTCTATCCTTGTGATTGTTTGTTCTCTCATTCAACTGATTAGCATTTAACTCAGAACCTTGAAACACTAGAAAAAGGACATTGTGAATCATAGAAAATGTTTAATACTCTATCCATCCAAATTTGTATGGGAGTATTAGGCTGGACATGGACACAATTTAAGGAAGAAAGAAGGCTTTTGCCACAAAATAATTTGCAGAAAGTACCTAAGTATTCTTAATACCGAAATACTACTCCCTCCGTTTAAAAAAGAATGACCTCCTTTCCTTTTTAGTCTGCTCTTTCTTTTTTTGGTAACAACTTTCCACGTGGCATGTTTAAGACCACAAGATTAAAGGGCAATTTTGTACATTTGACATAACTAATTTAGGACCACATGATCAAAAGTCTTCTTTATTTTCTTAAACTCCGTGCCAAGTCAAACTAGGTCATTCTTTATGAAACGGAGGGAGTATGTTTTTTATGCAGCGGGGGCTGTAGTAAGGGCTAAACAGATCGCAAATTGGGATGGAGAGAGTAGCTCTTTTACTCAGTGAAAGGAGTTAGCACCTGCAGTATTTGTTTTTATCACGCTGTTGCGTGGTCCGTTTCACAATGTCTTGTTTGATTTTTCAAGGTCGAACTAGTACTTCCAAGAACAGTTCATTCTATGTTTTATTGTTTCCATTATTTGTTTTGTTGTATCTTTTTTATAGGGTGGAGGCTTGCTTTATGTAGGAGCCAAAGCCCAACGAATCCAATCACCAAATCTATTGAAATGAATACATGTTGCTGAGGCCTAAATTGTTAAAAATAGATACTGTCGTTTGTCTAACACCCTCCCCATGTATATATGACCCACTAAAACAGCAATTTTATTACCTTACAAAAAAATTAATTTCTTCTTTTTATTAATTTTCTATTAGTTTTGGTCCAAACTCAAATATTGGTGGTTGTTGTTAAGCCTCATTTTGAGTTGACAGAAAGGCAGCACTTTCTTTTGATACCCGGCTTTTCCAAGAGCTTTTATCATCACACGAGTCTTTTAATGTTAGTACTTTATTTAAACCTCTTATTTCAAATTTGATATAGGTTTTGTAAAGAATCCTTTTAATTCTCATAGTTTTCTGGATATGCGAAATTAGTTCATGTGTTTTAGTTCCTACCCCAATCCATTGATGGTCTAAACTGAGTAATCCAGAAAGCCAGAAACCACACTATGGTGCTCTTATGGAGTTCCTTTTGATTTTCTTACCATGCCTCTTTGTGACTCTAATTGCAAGTCTGTTCCTCGGTCAAGAGGGACTAAATGCTAGCTATGCTTTATCTATGTTTAACATGTTACTGTTATTATTTTTGAAATCTGACCTTTTTTCAGATTTTGACTTCTCCACAAACAATCAGTACATTGCATCATCTTCAATGGATAAAACTGTCAGAGTATGGGA</genome_strand>
        <mrna_strand>TGGAATTCCTTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACGAAGTCCCAGTCAAGCAAGTCAAGCATTGAGTCGGACTACTAGTTTCAGTTCAAATGTGAGTGACACTGATGATCGTCCACGTAGAAGGTCGGAACCTGCATATTCCTTTGTGGGGATGCATTGCATTTTTGATCAATGCAAGGCCATGG..................................................................................TTACGGTTATAAAGTTTGGGCATATGAGTTCTGATCTACTTGCATATGGAGCAACCGATGGCAGTTTAACTGTATGCAGTGTCTCCATGCCCCCTTCAGTCATTAAGCAGTTAACAGGGCATTCAAAAGATGTCACAGGTTGGATTAACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGACTTCTCCACAAACAATCAGTACATTGCATCATCTTCAATGGGATAAACTGTCAGAGTATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549834" ref_strand="+" ref_description="SGN-E549834 [TUS-6-I18]">
      <seq>tacattgcatcatcttcaatggataaaactgtcagagtatgggatattcctagaggcctttgtattagggtgatttatggagtctcttcacagctttgtattcgatttcatcctgtgaacaacaacttcctttctgctggcaatgcaaaaaaagaaataaatgtgttcaattttagcacggggagaacgatcagtacaactgtggtcgatggcgaagtcactgccatggaccatgaccacactggtcagtttattttctgcggtgatagtcaggggtgtatttacacagttagtatgaactcacatacaggtgcactatctcgaactcatcggaatagaagtagcagtaagcatagatctgctgttacaactgttgagtacaggacattttctctgctggcacgaggccctgtcctgctgacttttactcgtgacggaagtttgtcttttttcagcatctctttggagatgaaaggttatttgacactccggtgctcactgaagctggctccacggctacacagcattcgtgcttctttctgtcctttactttcccttgaaaagggagaatacatagttgctgggagtgaagatgcaaatgtttacttttatgatttgactcgaccaaagaatacatgtgtaaacaaacttcagggccatggctatccagtaataggtattgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="37547" stop="40698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37847" g_stop="37960" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37961" i_stop="38311" i_length="351">
            <donor d_prob="0.147" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38312" g_stop="38359" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="162" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38360" i_stop="39068" i_length="709">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39069" g_stop="39179" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="273" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39180" i_stop="39269" i_length="90">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39270" g_stop="39451" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="455" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39452" i_stop="39541" i_length="90">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39542" g_stop="39663" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="577" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39664" i_stop="40196" i_length="533">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.570" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40197" g_stop="40273" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="654" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40274" i_stop="40367" i_length="94">
            <donor d_prob="0.324" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40368" g_stop="40398" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="685" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E549834" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37847" e_stop="37960"/>
          <exon e_start="38312" e_stop="38359"/>
          <exon e_start="39069" e_stop="39179"/>
          <exon e_start="39270" e_stop="39451"/>
          <exon e_start="39542" e_stop="39663"/>
          <exon e_start="40197" e_stop="40273"/>
          <exon e_start="40368" e_stop="40398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTGCATCATCTTCAATGGATAAAACTGTCAGAGTATGGGATATTTCTAGAGGCCTTTGCATTAGGGTGATTTATGGAGTCTCTTCACAGCTTTGTATTCGATTTCATCCTGTAAGTGGGCAAAGATGCACCTTTTGGTTATGGGTACACATTTTCTGCAACCACCAGAATAGACTTTCCTAAGGCATGTTTGCATGCAAATTTTTTGTGTTATTGTCAATGAATATTTGCATGTGTTCTCCTTTTGCTTGGCAGTACAATAAACCATTTTCTTTTTTTCCATCTTCTTTTCAGTTTTTTTTTTTTAACTATTGTATTTTGTAACTATTATCCATTCAGTGAGCTGTATAACTTATTGCATGGAGCACCTTCAAATTCTTTTTAGGCTTGGCATTTATATGCATTTAAATAACTTTCTAAAATTAGCTCTTCCTTTGTTGCCTTTTTTATTTTCTTTTACAGGTGAACAACAACTTCCTTTCTGCTGGCAATGCAAAAAAAGAAATAAATGTAATTATCCTTTGCTTTTTAGCTGAACACATTCTATTGTTTAGCTCTACTGTATAAATCGTTGTACATATCCTTGTTAGATTTATTGGCTTAATTAGGGTAATACTTCTTCATGGGCACATACAAGTATTTATCTGCTCTCCGAGGAAAGAGGATAGAACAAAGAAAGTAGGAGAGGATATTTTCATGTGCACAGCAGTTATCATGAAATTAGACTATTAGAGAGATAACAATTCCAAAATGCATCAAGGTACACTTGTTTTTCATATCCAAGGGGTTGGCTGAGTGGTTGAGGCACAGTAGTAATAATCTGGAGAGTCTTAGGGGAGCAGTACAAATTTAATTTGGCTGACATTCTAACCTACTAGAGTATTTCTTTTGCTTCTAAAATTGAATTTGGATATTGTTGCACTTGAATAAGTAGGTTACTTCATTGTAAAAAAAACAAACAAGTAGGTTACTTCATTCTACAAAAAAAAAATGTAGGTTACTTCATTCTAAAAGAAAAACAAGTAGGTTACTTCTTACTTATATGCCTGCAGAAACTGTCGGTGTATTCATACACATGTTCAAATTACTTCTGACGGATTGGATGACATTGCATCCCTGTATATATATATTTTTTCACCATATATAATTATGTCACAGCCTTCATTTCACTCTTTATTTTCTACCTCATTGAGCCCTAAACCTTCAAACTAACATTCAGGTGTTCAATTTTAGCACGGGGAGAACGATCAGTACAACTGTGGTCGATGGCGAAGTCACTGCCATGGACCATGACCACACTGGTCAGTTTATTTTCTGCGGTGATAGTCAGGTTACCTGCTTTGTCCCTATTATTCTTCATTACAATTTCTAGACCTCTTCTGTACCAAGGCTTTACTATATTCAGCTTTATTATTTGCAGGGGTGTATTTACACAGTTAGTATGAACTCACATACAGGTGCACTATCTCGAACTCATCGGAATAGAAGTAGCAGTAAGCATAGATCTGCTGTTACAACTGTTGAGTACAGGACATTTTCTCTGCTGGCACGAGGCCCTGTCCTGCTGACTTTTACTCGTGACGGAAGTTTGTCTTTTTTCAGGTCAAATTGAAATATATGCCCTTCGTCTTGGTTTCTCTTTCTTCTGATTTTCTTTTTTCTAGTCATATTAAAAGTATTCTGGGTTTGCAGCATCTCTTTGGAGATGAAAGGTTATTTGACACTCCGGTGCTCACTGAAGCTGGCTCCACGGCTACACAGCATTCGTGCTTCTTTCTGTCCTTTACTTTCCCTTGAAAAGGGAGAATACATAGGTATGTACCGGATTTGTTTATAAATAGTTTCTCTTTAAAAACTACTTCCAATTTGTAAATCTCTGCTTACTTTTTCCCCTCTCGAAATCCTAATATTGTAGTTTGTTTGGTTACCAAGCTGGAAGTCATTTTCTTGTGGAGAGATTTGTTTTGGTACAGATCCCTTGTTTTATTGACTTTTCACCTTCTACCTTTCAACTTCTATTGTATTTATTTACAATCAAGAAACTACTCAAAATGATGAAAAAAAGTATGCGTTTGAGTTGCCAAACATTATATTGGAGGAAGTAATATCTCTTCTCCTAAAGAATTGTCTTTTGTTTCCTACATGCGTTTCTTTTGTTTGGAAAAATAACAAGAATCAAAAAGTTCTGATGACTTTGATCTGATCTATTGTGTTTCATTCCTTGGGTTGCCCGGGTAGCAACAGTGTTGTTCCCTGAAGCTTCATGGATGTAAAACATGTTGACAGTTTCTACTGTAAATGAATTTCTTCCACAACTGACGTAGTTATTCATTCTGTCAACTTGAAGTTGCTGGGAGTGAAGATGCAAATGTTTACTTTTATGATTTGACTCGACCAAAGAATACATGTGTAAACAAACTTCAGGTATGAAAAAGATGAGCAGATTTCGTCTCCAGACTTATATTATCTCGACGACCACGGAAAGAGAATTATTAAATTGGGGTGCATTTGGCTGCAGGGCCATGGCTATCCAGTAATAGGTATTGCTT</genome_strand>
        <mrna_strand>TACATTGCATCATCTTCAATGGATAAAACTGTCAGAGTATGGGATATTCCTAGAGGCCTTTGTATTAGGGTGATTTATGGAGTCTCTTCACAGCTTTGTATTCGATTTCATCCT...............................................................................................................................................................................................................................................................................................................................................................GTGAACAACAACTTCCTTTCTGCTGGCAATGCAAAAAAAGAAATAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCAATTTTAGCACGGGGAGAACGATCAGTACAACTGTGGTCGATGGCGAAGTCACTGCCATGGACCATGACCACACTGGTCAGTTTATTTTCTGCGGTGATAGTCAG..........................................................................................GGGTGTATTTACACAGTTAGTATGAACTCACATACAGGTGCACTATCTCGAACTCATCGGAATAGAAGTAGCAGTAAGCATAGATCTGCTGTTACAACTGTTGAGTACAGGACATTTTCTCTGCTGGCACGAGGCCCTGTCCTGCTGACTTTTACTCGTGACGGAAGTTTGTCTTTTTTCAG..........................................................................................CATCTCTTTGGAGATGAAAGGTTATTTGACACTCCGGTGCTCACTGAAGCTGGCTCCACGGCTACACAGCATTCGTGCTTCTTTCTGTCCTTTACTTTCCCTTGAAAAGGGAGAATACATAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGGGAGTGAAGATGCAAATGTTTACTTTTATGATTTGACTCGACCAAAGAATACATGTGTAAACAAACTTCAG..............................................................................................GGCCATGGCTATCCAGTAATAGGTATTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244406" ref_strand="+" ref_description="SGN-E244406 [cLEF-3-C15]">
      <seq>acattgcatcatcttcaatggataaaactgtcagagtatgggatatttctagaggcctttgcattagggtgatttatggagtctcttcacagctttgtattcgatttcatcctgtgaacaacaacttcctttctgctggcaatgcaaaaaaagaaataaatgtgttcaattttagcacggggagaacgatcagtacaactgtggtcgatggcgaagtcactgccatggaccatgaccacactggtcagtttattttctgcggtgatagtcaggggtgtatttacacagttagtatgaactcacatacaggtgcactatctcgaactcatcggaatagaagtagcagtaagcatagatctgctgttacaactgttgagtacaggacattttctctgctggcacgaggccctgtcctgctgacttttactcgtgacggaagtttgtcttttttcagcatctctttggagatgaaaggttatttgacactccggtgctcactgaagctggctccacggctacacagcattcgtgcttctttctgtcctttactttcccttgaaaagggagaatccataggtcgtgggagtgaagatgcaaatgtttacttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="37548" stop="40532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37848" g_stop="37960" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37961" i_stop="38311" i_length="351">
            <donor d_prob="0.147" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38312" g_stop="38359" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="161" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38360" i_stop="39068" i_length="709">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39069" g_stop="39179" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="272" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39180" i_stop="39269" i_length="90">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39270" g_stop="39451" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="454" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39452" i_stop="39541" i_length="90">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39542" g_stop="39663" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="576" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39664" i_stop="40196" i_length="533">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.570" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40197" g_stop="40232" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="612" r_length="36" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E244406" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37848" e_stop="37960"/>
          <exon e_start="38312" e_stop="38359"/>
          <exon e_start="39069" e_stop="39179"/>
          <exon e_start="39270" e_stop="39451"/>
          <exon e_start="39542" e_stop="39663"/>
          <exon e_start="40197" e_stop="40232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTGCATCATCTTCAATGGATAAAACTGTCAGAGTATGGGATATTTCTAGAGGCCTTTGCATTAGGGTGATTTATGGAGTCTCTTCACAGCTTTGTATTCGATTTCATCCTGTAAGTGGGCAAAGATGCACCTTTTGGTTATGGGTACACATTTTCTGCAACCACCAGAATAGACTTTCCTAAGGCATGTTTGCATGCAAATTTTTTGTGTTATTGTCAATGAATATTTGCATGTGTTCTCCTTTTGCTTGGCAGTACAATAAACCATTTTCTTTTTTTCCATCTTCTTTTCAGTTTTTTTTTTTTAACTATTGTATTTTGTAACTATTATCCATTCAGTGAGCTGTATAACTTATTGCATGGAGCACCTTCAAATTCTTTTTAGGCTTGGCATTTATATGCATTTAAATAACTTTCTAAAATTAGCTCTTCCTTTGTTGCCTTTTTTATTTTCTTTTACAGGTGAACAACAACTTCCTTTCTGCTGGCAATGCAAAAAAAGAAATAAATGTAATTATCCTTTGCTTTTTAGCTGAACACATTCTATTGTTTAGCTCTACTGTATAAATCGTTGTACATATCCTTGTTAGATTTATTGGCTTAATTAGGGTAATACTTCTTCATGGGCACATACAAGTATTTATCTGCTCTCCGAGGAAAGAGGATAGAACAAAGAAAGTAGGAGAGGATATTTTCATGTGCACAGCAGTTATCATGAAATTAGACTATTAGAGAGATAACAATTCCAAAATGCATCAAGGTACACTTGTTTTTCATATCCAAGGGGTTGGCTGAGTGGTTGAGGCACAGTAGTAATAATCTGGAGAGTCTTAGGGGAGCAGTACAAATTTAATTTGGCTGACATTCTAACCTACTAGAGTATTTCTTTTGCTTCTAAAATTGAATTTGGATATTGTTGCACTTGAATAAGTAGGTTACTTCATTGTAAAAAAAACAAACAAGTAGGTTACTTCATTCTACAAAAAAAAAATGTAGGTTACTTCATTCTAAAAGAAAAACAAGTAGGTTACTTCTTACTTATATGCCTGCAGAAACTGTCGGTGTATTCATACACATGTTCAAATTACTTCTGACGGATTGGATGACATTGCATCCCTGTATATATATATTTTTTCACCATATATAATTATGTCACAGCCTTCATTTCACTCTTTATTTTCTACCTCATTGAGCCCTAAACCTTCAAACTAACATTCAGGTGTTCAATTTTAGCACGGGGAGAACGATCAGTACAACTGTGGTCGATGGCGAAGTCACTGCCATGGACCATGACCACACTGGTCAGTTTATTTTCTGCGGTGATAGTCAGGTTACCTGCTTTGTCCCTATTATTCTTCATTACAATTTCTAGACCTCTTCTGTACCAAGGCTTTACTATATTCAGCTTTATTATTTGCAGGGGTGTATTTACACAGTTAGTATGAACTCACATACAGGTGCACTATCTCGAACTCATCGGAATAGAAGTAGCAGTAAGCATAGATCTGCTGTTACAACTGTTGAGTACAGGACATTTTCTCTGCTGGCACGAGGCCCTGTCCTGCTGACTTTTACTCGTGACGGAAGTTTGTCTTTTTTCAGGTCAAATTGAAATATATGCCCTTCGTCTTGGTTTCTCTTTCTTCTGATTTTCTTTTTTCTAGTCATATTAAAAGTATTCTGGGTTTGCAGCATCTCTTTGGAGATGAAAGGTTATTTGACACTCCGGTGCTCACTGAAGCTGGCTCCACGGCTACACAGCATTCGTGCTTCTTTCTGTCCTTTACTTTCCCTTGAAAAGGGAGAATACATAGGTATGTACCGGATTTGTTTATAAATAGTTTCTCTTTAAAAACTACTTCCAATTTGTAAATCTCTGCTTACTTTTTCCCCTCTCGAAATCCTAATATTGTAGTTTGTTTGGTTACCAAGCTGGAAGTCATTTTCTTGTGGAGAGATTTGTTTTGGTACAGATCCCTTGTTTTATTGACTTTTCACCTTCTACCTTTCAACTTCTATTGTATTTATTTACAATCAAGAAACTACTCAAAATGATGAAAAAAAGTATGCGTTTGAGTTGCCAAACATTATATTGGAGGAAGTAATATCTCTTCTCCTAAAGAATTGTCTTTTGTTTCCTACATGCGTTTCTTTTGTTTGGAAAAATAACAAGAATCAAAAAGTTCTGATGACTTTGATCTGATCTATTGTGTTTCATTCCTTGGGTTGCCCGGGTAGCAACAGTGTTGTTCCCTGAAGCTTCATGGATGTAAAACATGTTGACAGTTTCTACTGTAAATGAATTTCTTCCACAACTGACGTAGTTATTCATTCTGTCAACTTGAAGTTGCTGGGAGTGAAGATGCAAATGTTTACTTTTATG</genome_strand>
        <mrna_strand>ACATTGCATCATCTTCAATGGATAAAACTGTCAGAGTATGGGATATTTCTAGAGGCCTTTGCATTAGGGTGATTTATGGAGTCTCTTCACAGCTTTGTATTCGATTTCATCCT...............................................................................................................................................................................................................................................................................................................................................................GTGAACAACAACTTCCTTTCTGCTGGCAATGCAAAAAAAGAAATAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCAATTTTAGCACGGGGAGAACGATCAGTACAACTGTGGTCGATGGCGAAGTCACTGCCATGGACCATGACCACACTGGTCAGTTTATTTTCTGCGGTGATAGTCAG..........................................................................................GGGTGTATTTACACAGTTAGTATGAACTCACATACAGGTGCACTATCTCGAACTCATCGGAATAGAAGTAGCAGTAAGCATAGATCTGCTGTTACAACTGTTGAGTACAGGACATTTTCTCTGCTGGCACGAGGCCCTGTCCTGCTGACTTTTACTCGTGACGGAAGTTTGTCTTTTTTCAG..........................................................................................CATCTCTTTGGAGATGAAAGGTTATTTGACACTCCGGTGCTCACTGAAGCTGGCTCCACGGCTACACAGCATTCGTGCTTCTTTCTGTCCTTTACTTTCCCTTGAAAAGGGAGAATCCATAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGGGAGTGAAGATGCAAATGTTTACTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549697" ref_strand="+" ref_description="SGN-E549697 [TUS-6-I18](-)">
      <seq>tcggaatagaagtagcagtaagcatagatctgctgttacaactgttgagtacaggacattttctctgctggcacgaggccctgtcctgctgacttttactcgtgacggaagtttgtcttttttcagcatctctttggagatgaaaggttatttgacactccggtgctcactgaagctggctccacggctacacagcattcgtgcttctttctgtcctttactttcccttgaaaagggagaatacatagttgctgggagtgaagatgcaaatgtttacttttatgatttgactcgaccaaagaatacatgtgtaaacaaacttcagggccatggctatccagtaataggtattgcttggaatcatggagagaacttgttagcgtcgtctgattttggcggcaccgtcattgtatggaagagagcaaaaacagcttaacatcagtgcagatctgagctaaaagcagtttgcatgcagttgatctgttcgattctggcgtggaatctgcgaggattgtaattttctatacaggggtataagtttagctatctgaaagttttttaggggacttgaaaagtgtgacatcagtgagcgatgcatactgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="39026" stop="40949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39326" g_stop="39451" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39452" i_stop="39541" i_length="90">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39542" g_stop="39663" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="248" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39664" i_stop="40196" i_length="533">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.570" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40197" g_stop="40273" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="325" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40274" i_stop="40367" i_length="94">
            <donor d_prob="0.324" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40368" g_stop="40649" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="606" r_length="281" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E549697" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39326" e_stop="39451"/>
          <exon e_start="39542" e_stop="39663"/>
          <exon e_start="40197" e_stop="40273"/>
          <exon e_start="40368" e_stop="40649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAATAGAAGTAGCAGTAAGCATAGATCTGCTGTTACAACTGTTGAGTACAGGACATTTTCTCTGCTGGCACGAGGCCCTGTCCTGCTGACTTTTACTCGTGACGGAAGTTTGTCTTTTTTCAGGTCAAATTGAAATATATGCCCTTCGTCTTGGTTTCTCTTTCTTCTGATTTTCTTTTTTCTAGTCATATTAAAAGTATTCTGGGTTTGCAGCATCTCTTTGGAGATGAAAGGTTATTTGACACTCCGGTGCTCACTGAAGCTGGCTCCACGGCTACACAGCATTCGTGCTTCTTTCTGTCCTTTACTTTCCCTTGAAAAGGGAGAATACATAGGTATGTACCGGATTTGTTTATAAATAGTTTCTCTTTAAAAACTACTTCCAATTTGTAAATCTCTGCTTACTTTTTCCCCTCTCGAAATCCTAATATTGTAGTTTGTTTGGTTACCAAGCTGGAAGTCATTTTCTTGTGGAGAGATTTGTTTTGGTACAGATCCCTTGTTTTATTGACTTTTCACCTTCTACCTTTCAACTTCTATTGTATTTATTTACAATCAAGAAACTACTCAAAATGATGAAAAAAAGTATGCGTTTGAGTTGCCAAACATTATATTGGAGGAAGTAATATCTCTTCTCCTAAAGAATTGTCTTTTGTTTCCTACATGCGTTTCTTTTGTTTGGAAAAATAACAAGAATCAAAAAGTTCTGATGACTTTGATCTGATCTATTGTGTTTCATTCCTTGGGTTGCCCGGGTAGCAACAGTGTTGTTCCCTGAAGCTTCATGGATGTAAAACATGTTGACAGTTTCTACTGTAAATGAATTTCTTCCACAACTGACGTAGTTATTCATTCTGTCAACTTGAAGTTGCTGGGAGTGAAGATGCAAATGTTTACTTTTATGATTTGACTCGACCAAAGAATACATGTGTAAACAAACTTCAGGTATGAAAAAGATGAGCAGATTTCGTCTCCAGACTTATATTATCTCGACGACCACGGAAAGAGAATTATTAAATTGGGGTGCATTTGGCTGCAGGGCCATGGCTATCCAGTAATAGGTATTGCTTGGAATCATGGAGAGAACTTGTTAGCGTCGTCTGATTTTGGCGGCACCGTCATTGTATGGAAGAGAGCAAAAACAGCTTAACATCAGTGCAGATCTGAGCTAAAAGCAGTTTGCATGCAGTTGATCTGTTCGATTCTGGCGTGGAATCTGCGAGGATTGTAATTTTCTATACAGGCATATCAGTTTAGCTATCTGAAAGTTTTTTAGGGGACTTGAAAAGTGTGACATCAGTGAGCTTTTGCATACTGATCG</genome_strand>
        <mrna_strand>TCGGAATAGAAGTAGCAGTAAGCATAGATCTGCTGTTACAACTGTTGAGTACAGGACATTTTCTCTGCTGGCACGAGGCCCTGTCCTGCTGACTTTTACTCGTGACGGAAGTTTGTCTTTTTTCAG..........................................................................................CATCTCTTTGGAGATGAAAGGTTATTTGACACTCCGGTGCTCACTGAAGCTGGCTCCACGGCTACACAGCATTCGTGCTTCTTTCTGTCCTTTACTTTCCCTTGAAAAGGGAGAATACATAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGGGAGTGAAGATGCAAATGTTTACTTTTATGATTTGACTCGACCAAAGAATACATGTGTAAACAAACTTCAG..............................................................................................GGCCATGGCTATCCAGTAATAGGTATTGCTTGGAATCATGGAGAGAACTTGTTAGCGTCGTCTGATTTTGGCGGCACCGTCATTGTATGGAAGAGAGCAAAAACAGCTTAACATCAGTGCAGATCTGAGCTAAAAGCAGTTTGCATGCAGTTGATCTGTTCGATTCTGGCGTGGAATCTGCGAGGATTGTAATTTTCTATACAGGGGTATAAGTTTAGCTATCTGAAAGTTTTTTAGGGGACTTGAAAAGTGTGACATCAGTGAGC-GATGCATACTGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377081" ref_strand="+" ref_description="SGN-E377081 [TUS-21-G17](-)">
      <seq>ctttagtaatattaggtatgtacttttctgcatcgaaaatcttgttttggaaggataccatagtgtgggagaagccttagagctgaatgcatcagattcttgataacctttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtcttcagttaagttttctgctagcatagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcattttcctaaactggtacatcacttgcgtctacttctaacatctgaaatgactgcaactaagtgcaatcaattttcatccaggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattataactgcatcagaagcgacaatcatgtagactgatgtaaacggaagtgactgaaactttgtattacctactggtttatgctccttgtgtccttatatgtaggtcgaggaggtgtttggttgtgtgtaattatttactgtaggtttctcttctgttctttgacgctattttcttattagagcgacaggtgttgtttatgataaattaaagtagtttactgttttctgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44879" stop="40593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44579" g_stop="44123" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41195" g_stop="40889" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="764" r_length="307" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E377081" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44579" e_stop="44123"/>
          <exon e_start="41195" e_stop="40889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTTCTCTTCTGTTCTTTGACGCTATTTTCTTATTAGAGCGACAGGTGTTGTTTATGATAAATTAAAGTAGTTTACTGTTTTCTGTAAATACGTC</genome_strand>
        <mrna_strand>CTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTTCTCTTCTGTTCTTTGACGCTATTTTCTTATTAGAGCGACAGGTGTTGTTTATGATAAATTAAAGTAGTTTACTGTTTTCTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377381" ref_strand="+" ref_description="SGN-E377381 [TUS-21-O22](-)">
      <seq>ataccatagtgtgggagaagccttagagctgaatgcatcagattcttgataactttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtcttcagttaagttttctgctagcatagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcattttcctaaactggtacatcacttgcgtctacttctaacatctgaaatgactgcaactaagtgcaatcaattttcatccaggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattataactgcatcagaagcgacaatcatgtagactgatgtaaacggaagtgactgaaactttgtattacctactggtttatgctccttgtgtccttatatgtaggtcgaggaggtgtttggttgtgtgtaattatttactgtaggtttctcttctgttctttgacgctattttcttattagagcgacaggtgttgtttatgataaattaaagtagtttactgttttctgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44825" stop="40593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44525" g_stop="44123" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41195" g_stop="40889" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="709" r_length="307" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E377381" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44525" e_stop="44123"/>
          <exon e_start="41195" e_stop="40889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTTCTCTTCTGTTCTTTGACGCTATTTTCTTATTAGAGCGACAGGTGTTGTTTATGATAAATTAAAGTAGTTTACTGTTTTCTGTAAATACGTC</genome_strand>
        <mrna_strand>ATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAA-CTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTTCTCTTCTGTTCTTTGACGCTATTTTCTTATTAGAGCGACAGGTGTTGTTTATGATAAATTAAAGTAGTTTACTGTTTTCTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746347" ref_strand="+" ref_description="SGN-E746347 [GI|47104707]">
      <seq>cttggctggattcatatatctctctcctgtttgttcttcctgcactgtttgctgtttcaggcgcatgacttttgtagtgttacacactcctccttcagtccatggctaaaactcgtacaaatcgtcgaaccctagattcttacactgtcaaatccatcaacaagaccgttcgagccggcgactgcgtgttgatgagagcgtcggagtcgtcaaagccgtcgtacgttgctcgagttgagaagattgagtccgacaatagaggtggcaacgtcagggttcacgtccggtggtactaccgtccggaggagtcgatcggcggccgacgtcagtttcacggctccaaggaactttttatgtccgatcaccgagatatacaaagtgccgacacaattgaaggcaagtgtacggtccacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgtgtactgtaaatgtgaaatgccatacaatcctgatgacctcatggttcaatgtgagggctgcagtgactggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattataactgcatcagaagcgacaatcatgtagactgatgtaaacggaagtgactgaaactttgtattacctactggtttatgctccttgtgtccttatatgtaggtcgaggaggtgtttggttgtgtgtaattatttactgtaggtttctcttctgttctttgacgctattttcttattagagcgacaggtgttgtttatgataaattaaagtagtttactgttttctgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47454" stop="40593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47154" g_stop="46981" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46886" g_stop="46541" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="520" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46229" g_stop="46161" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="589" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46160" i_stop="44259" i_length="1902">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44258" g_stop="44123" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="725" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41195" g_stop="40896" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="1025" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1026" polyA_stop="1040"/>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E746347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1025</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47154" e_stop="46981"/>
          <exon e_start="46886" e_stop="46541"/>
          <exon e_start="46229" e_stop="46161"/>
          <exon e_start="44258" e_stop="44123"/>
          <exon e_start="41195" e_stop="40896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAGGTAAGTTCTACTCCATAAACCTTCTCTGAATTTTCCAGAAAAAAACTTTTTTCGCCGGGAAATCTAACATGCGCTACCTGGAAACGTTCTTCAGCCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCATGGTAGGTAATATATTATTATCTGGTTTCTTGTTTAGTTCTCAGTTACATGATGTTAAAAATCTTCTCATGTTTTAAAGTTACTCATAACAGGCAAATAGTTTAGTATGAATTGCTGCTAAATAGTATAGGTCATGCACTAGTTTCCAATCTCAAAGCCTTTTCCTATGTTTTATTACACGCTCTATGTGTACTATTTTCTTTTTTGATGAGTCACGACATAGTGCAAGAGCTAATTTCAAAAGAAAAGTTGGCCATTAGTTGCACCAGGGTATGCGACTCAAGCTGTTCATGAGTTTCTGGAGTTACTCAGACATTACCTGATGGAGGATCATGATACCTTTTAACATGTTGTATGACTTCTGCTCGAATGTTGGGAGCAAGTTTATCCACATAGTGTGGTTACTCAGACATTTTTTGAGTGCATGATGCAGTACAGATAATGTTCTACTTTTTTTTTTTTGAGAAGGTAAAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCTACAACAAATTACAGGTTCCTATTTACAATTGTGGAGAGTAGGAAGATCTTTAATCCTGTAGCAAAATTTACAAGGAACCTAAAACATATGTAACTGATTCTAGATCTATCATGTACTCCTGTTTACACCATAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTTCTCTTGTTTTGGAAGTATATGAGATTTCTTTCTTTCCACACTGACCTCCAGACGCAAGCCGGAATGATTTTTCAACTTTCTTTATGCCCGGAAATGCTTCCATAGCCTATTTTCTACTTTGAAACACTTATTTTTCTTTGCTTTCCTATTTGTGTAAAAAAAGTTTCCTTGATGTGATATTGGTAAGCGCCTTATCATACTGACAAAAAAGGGAGTAAGTTCCCTATTACATGTCCGTTAGATATCTGTACTGCCATCAGCTTTTCTGGTATATCTTTAATCATGTATGCTGATGTGTTATGCATATCTATATGGCTGGTCAGATTTGGAATATGCTTTGTTCAGGAAGTCAAATTATGGAAAGAATTTACCTACACACGGAGTTTACACCAACCAAATAAATGTATGACATGTGCATTTTATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTTCTCTTCTGTTCTTTGACGCTATTTTCTTATTAGAGCGACAGGTGTTGTTTATGATAAATTAAAGTAGTTTACTGTTTTCTGTAA</genome_strand>
        <mrna_strand>CTTGGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG..............................................................................................CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTTCTCTTCTGTTCTTTGACGCTATTTTCTTATTAGAGCGACAGGTGTTGTTTATGATAAATTAAAGTAGTTTACTGTTTTCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728593" ref_strand="+" ref_description="SGN-E728593 [LA18BC09]">
      <seq>gccgcttgacttttgtagtgttacacactcctccttcagtccatggctaaaactcgtacaaatcgtcgaaccctagattcttacactgtcaaatccatcaacaagaccgttcgagccggcgactgcgtgttgatgagagcgtcggagtcgtcaaagccgtcgtacgttgctcgagttgagaagattgagtccgacaatagaggtggcaacgtcagggttcacgtccggtggtactaccgtccggaggagtcgatcggcggccgacgtcagtttcacggctccaaggaactttttatgtccgatcaccgagatatacaaagtgccgacacaattgaaggcaagtgtacggtccacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgtgtactgtaaatgtgaaatgccatacaatcctgatgacctcatggttcaatgtgagggctgcagtgactggtttcaccctatttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattataactgcatcagaagcgacaatcatgtagactgatgtaaacggaagtgactgaaactttgtattacctactggtttatgctccttgtgtccttatatgtaggtcgaggaggtgtttggttgtgtgtaattattactgaaggtttctcttctgttctttgacgctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47395" stop="40655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47151" g_stop="47151" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47150" i_stop="47095" i_length="56">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47094" g_stop="46981" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="115" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46886" g_stop="46541" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="461" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46229" g_stop="46161" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="530" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46160" i_stop="44259" i_length="1902">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44258" g_stop="44123" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="666" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41195" g_stop="40955" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="906" r_length="240" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E728593" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47151" e_stop="47151"/>
          <exon e_start="47094" e_stop="46981"/>
          <exon e_start="46886" e_stop="46541"/>
          <exon e_start="46229" e_stop="46161"/>
          <exon e_start="44258" e_stop="44123"/>
          <exon e_start="41195" e_stop="40955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAGGTAAGTTCTACTCCATAAACCTTCTCTGAATTTTCCAGAAAAAAACTTTTTTCGCCGGGAAATCTAACATGCGCTACCTGGAAACGTTCTTCAGCCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCATGGTAGGTAATATATTATTATCTGGTTTCTTGTTTAGTTCTCAGTTACATGATGTTAAAAATCTTCTCATGTTTTAAAGTTACTCATAACAGGCAAATAGTTTAGTATGAATTGCTGCTAAATAGTATAGGTCATGCACTAGTTTCCAATCTCAAAGCCTTTTCCTATGTTTTATTACACGCTCTATGTGTACTATTTTCTTTTTTGATGAGTCACGACATAGTGCAAGAGCTAATTTCAAAAGAAAAGTTGGCCATTAGTTGCACCAGGGTATGCGACTCAAGCTGTTCATGAGTTTCTGGAGTTACTCAGACATTACCTGATGGAGGATCATGATACCTTTTAACATGTTGTATGACTTCTGCTCGAATGTTGGGAGCAAGTTTATCCACATAGTGTGGTTACTCAGACATTTTTTGAGTGCATGATGCAGTACAGATAATGTTCTACTTTTTTTTTTTTGAGAAGGTAAAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCTACAACAAATTACAGGTTCCTATTTACAATTGTGGAGAGTAGGAAGATCTTTAATCCTGTAGCAAAATTTACAAGGAACCTAAAACATATGTAACTGATTCTAGATCTATCATGTACTCCTGTTTACACCATAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTTCTCTTGTTTTGGAAGTATATGAGATTTCTTTCTTTCCACACTGACCTCCAGACGCAAGCCGGAATGATTTTTCAACTTTCTTTATGCCCGGAAATGCTTCCATAGCCTATTTTCTACTTTGAAACACTTATTTTTCTTTGCTTTCCTATTTGTGTAAAAAAAGTTTCCTTGATGTGATATTGGTAAGCGCCTTATCATACTGACAAAAAAGGGAGTAAGTTCCCTATTACATGTCCGTTAGATATCTGTACTGCCATCAGCTTTTCTGGTATATCTTTAATCATGTATGCTGATGTGTTATGCATATCTATATGGCTGGTCAGATTTGGAATATGCTTTGTTCAGGAAGTCAAATTATGGAAAGAATTTACCTACACACGGAGTTTACACCAACCAAATAAATGTATGACATGTGCATTTTATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTTCTCTTCTGTTCTTTGACGCTATTTT</genome_strand>
        <mrna_strand>G........................................................CCGCTTGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG..............................................................................................CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCCTATTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTA-TTACTGAAGGTTTCTCTTCTGTTCTTTGACGCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377522" ref_strand="+" ref_description="SGN-E377522 [TUS-20-P21](-)">
      <seq>catagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcattttcctaaactggtacatcacttgcgtctacttctaacatctgaaatgcctgcaactaagtgcaatcaattttcatccaggtttcaccctacttgtatagacatgacgccagaggaagccaagagactcgaccacttcttttgccagaattgttcatctgaagatcagaagaaattgttaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattatatctgcatcagaagcgacaatcatgtagactgatgtaaacggaagtgactgaaactttgtatttcctactggtggatgctccttgtgtccttatatgtaggtcgaggaggtgtttggttgtgtgtaattatttactgtaggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44693" stop="40680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44393" g_stop="44123" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41195" g_stop="40980" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="487" r_length="216" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E377522" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44393" e_stop="44123"/>
          <exon e_start="41195" e_stop="40980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTT</genome_strand>
        <mrna_strand>CATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGCCTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTCGACCACTTCTTTTGCCAGAATTGTTCATCTGAAGATCAGAAGAAATTGTTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATATCTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTTCCTACTGGTGGATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376893" ref_strand="+" ref_description="SGN-E376893 [TUS-19-J5]">
      <seq>aaggaactttttatgtccgatcaccgagatatacaaagtgccgacacaattgaaggcaagtgtacggtccacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgtgtactgtaaatgtgaaatgccatacaatcctgatgacctcatggttcaatgtgagggctgcagtgactggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattataactgcatcagaagcgacaatcatgtagactgatgtaaacggaagtgactgaaactttgtattacctactggtttatgctccttgtgtccttatatgtaggtcgaggaggtgtttggttgtgtgtaattattttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47019" stop="40689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46719" g_stop="46541" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46229" g_stop="46161" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="248" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46160" i_stop="44259" i_length="1902">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44258" g_stop="44123" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="384" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41195" g_stop="40989" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="592" r_length="208" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E376893" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46719" e_stop="46541"/>
          <exon e_start="46229" e_stop="46161"/>
          <exon e_start="44258" e_stop="44123"/>
          <exon e_start="41195" e_stop="40989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCATGGTAGGTAATATATTATTATCTGGTTTCTTGTTTAGTTCTCAGTTACATGATGTTAAAAATCTTCTCATGTTTTAAAGTTACTCATAACAGGCAAATAGTTTAGTATGAATTGCTGCTAAATAGTATAGGTCATGCACTAGTTTCCAATCTCAAAGCCTTTTCCTATGTTTTATTACACGCTCTATGTGTACTATTTTCTTTTTTGATGAGTCACGACATAGTGCAAGAGCTAATTTCAAAAGAAAAGTTGGCCATTAGTTGCACCAGGGTATGCGACTCAAGCTGTTCATGAGTTTCTGGAGTTACTCAGACATTACCTGATGGAGGATCATGATACCTTTTAACATGTTGTATGACTTCTGCTCGAATGTTGGGAGCAAGTTTATCCACATAGTGTGGTTACTCAGACATTTTTTGAGTGCATGATGCAGTACAGATAATGTTCTACTTTTTTTTTTTTGAGAAGGTAAAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCTACAACAAATTACAGGTTCCTATTTACAATTGTGGAGAGTAGGAAGATCTTTAATCCTGTAGCAAAATTTACAAGGAACCTAAAACATATGTAACTGATTCTAGATCTATCATGTACTCCTGTTTACACCATAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTTCTCTTGTTTTGGAAGTATATGAGATTTCTTTCTTTCCACACTGACCTCCAGACGCAAGCCGGAATGATTTTTCAACTTTCTTTATGCCCGGAAATGCTTCCATAGCCTATTTTCTACTTTGAAACACTTATTTTTCTTTGCTTTCCTATTTGTGTAAAAAAAGTTTCCTTGATGTGATATTGGTAAGCGCCTTATCATACTGACAAAAAAGGGAGTAAGTTCCCTATTACATGTCCGTTAGATATCTGTACTGCCATCAGCTTTTCTGGTATATCTTTAATCATGTATGCTGATGTGTTATGCATATCTATATGGCTGGTCAGATTTGGAATATGCTTTGTTCAGGAAGTCAAATTATGGAAAGAATTTACCTACACACGGAGTTTACACCAACCAAATAAATGTATGACATGTGCATTTTATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTA-TTTAC</genome_strand>
        <mrna_strand>AAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377382" ref_strand="+" ref_description="SGN-E377382 [TUS-21-O22]">
      <seq>agaaaccatcaggaatctttgctcgaaagacaaaatccgagtttttaatgcgaaaacagaaagacgccattattttagctatcttaggttgtcaggcctttagtaatattaggtatgtacttttctgcatcgaaaatcttgttttggaaggataccatagtgtgggagaagccttagagctgaatgcatcagattcttgataacctttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtcttcagttaagttttctgctagcatagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcattttcctaaactggtacatcacttgcgtctacttctaacatctgaaatgactgcaactaagtgcaatcaattttcatccaggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattataactgcatcagaagcgancatcatgtagactgatgtaaacggaagtgactgaaactttgtattacctactgntttatgctccttgtgtccttatatgtaggtcgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44976" stop="40716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44676" g_stop="44123" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41195" g_stop="41016" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="734" r_length="180" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E377382" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44676" e_stop="44123"/>
          <exon e_start="41195" e_stop="41016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGA</genome_strand>
        <mrna_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGANCATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGNTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354553" ref_strand="+" ref_description="SGN-E354553 [cTOS-17-G8]">
      <seq>cgtccggaggagtcgatcggcggccgacgtcagtttcacggctccaaggaactttttatgtccgatcaccgagatatacaaagtgccgacacaattgaaggcaagtgtacggtccacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgtgtactgtaaatgtgaaatgccatacaatcctgatgacctcatggttcaatgtgagggctgcagtgactggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattataactgcatcagaagcgacaatcatgtagactgatgtaaacggaagtgactgaaactttgtattacctactgggttatgctccttgtgtccttatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47064" stop="40726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46764" g_stop="46541" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46229" g_stop="46161" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="293" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46160" i_stop="44259" i_length="1902">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44258" g_stop="44123" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="429" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41195" g_stop="41026" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="599" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E354553" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46764" e_stop="46541"/>
          <exon e_start="46229" e_stop="46161"/>
          <exon e_start="44258" e_stop="44123"/>
          <exon e_start="41195" e_stop="41026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCATGGTAGGTAATATATTATTATCTGGTTTCTTGTTTAGTTCTCAGTTACATGATGTTAAAAATCTTCTCATGTTTTAAAGTTACTCATAACAGGCAAATAGTTTAGTATGAATTGCTGCTAAATAGTATAGGTCATGCACTAGTTTCCAATCTCAAAGCCTTTTCCTATGTTTTATTACACGCTCTATGTGTACTATTTTCTTTTTTGATGAGTCACGACATAGTGCAAGAGCTAATTTCAAAAGAAAAGTTGGCCATTAGTTGCACCAGGGTATGCGACTCAAGCTGTTCATGAGTTTCTGGAGTTACTCAGACATTACCTGATGGAGGATCATGATACCTTTTAACATGTTGTATGACTTCTGCTCGAATGTTGGGAGCAAGTTTATCCACATAGTGTGGTTACTCAGACATTTTTTGAGTGCATGATGCAGTACAGATAATGTTCTACTTTTTTTTTTTTGAGAAGGTAAAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCTACAACAAATTACAGGTTCCTATTTACAATTGTGGAGAGTAGGAAGATCTTTAATCCTGTAGCAAAATTTACAAGGAACCTAAAACATATGTAACTGATTCTAGATCTATCATGTACTCCTGTTTACACCATAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTTCTCTTGTTTTGGAAGTATATGAGATTTCTTTCTTTCCACACTGACCTCCAGACGCAAGCCGGAATGATTTTTCAACTTTCTTTATGCCCGGAAATGCTTCCATAGCCTATTTTCTACTTTGAAACACTTATTTTTCTTTGCTTTCCTATTTGTGTAAAAAAAGTTTCCTTGATGTGATATTGGTAAGCGCCTTATCATACTGACAAAAAAGGGAGTAAGTTCCCTATTACATGTCCGTTAGATATCTGTACTGCCATCAGCTTTTCTGGTATATCTTTAATCATGTATGCTGATGTGTTATGCATATCTATATGGCTGGTCAGATTTGGAATATGCTTTGTTCAGGAAGTCAAATTATGGAAAGAATTTACCTACACACGGAGTTTACACCAACCAAATAAATGTATGACATGTGCATTTTATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGT</genome_strand>
        <mrna_strand>CGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGGTTATGCTCCTTGTGTCCTTATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377082" ref_strand="+" ref_description="SGN-E377082 [TUS-21-G17]">
      <seq>agaaaccatcaggaatctttgctcgaaagacaaaatccgagtttttaatgcgaaaacagaaagacgccattattttagctatcttaggttgtcaggcctttagtaatattaggtatgtacttttctgcatcgaaaatcttgttttggaaggataccatagtgtgggagaagccttagagctgaatgcatcagattcttgataacctttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtcttcagttaagttttctgctagcatagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcattttcctaaactggtacatcacttgcgtctacttctaacatctgaaatgactgcaactaagtgcaatcaattttcatccaggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgtaggcattataactgcatcagaagcgancatcatgtagactgatgtaaacggaagtgactgaaactttgtattacctactggtttatgctccttgtgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44976" stop="40733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44676" g_stop="44123" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41195" g_stop="41033" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="717" r_length="163" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E377082" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44676" e_stop="44123"/>
          <exon e_start="41195" e_stop="41033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTG-AGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCT</genome_strand>
        <mrna_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGTAGGC-ATTATAACTGCATCAGAAGCGANCATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726329" ref_strand="+" ref_description="SGN-E726329 [LA11CA10]">
      <seq>cctggcttggctggattcatatatctctctcctgtttgttcttcctgcactgtttgctgtttcaggcgcatgacttttgtagtgttacacactcctccttcagtccatggctaaaactcgtacaaatcgtcgaaccctagattcttacactgtcaaatccatcaacaagaccgttcgagccggcgactgcgtgttgatgagagcgtcggagtcgtcaaagccgtcgtacgttgctcgagttgagaagattgagtccgacaatagaggtggcaacgtcagggttcacgtccggtggtactaccgtccggaggagtcgatcggcggccgacgtcagtttcacggctccaaggaactttttatgtccgatcaccgagatatacaaagtgccgacacaattgaaggcaagtgtacggtccacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgtgtactgtaaatgtgaaatgccatacaatcctgatgacctcatggttcaatgtgagggctgcagtgactggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattataactgcatcagaagcgacaatcatgtagactgatgtnaacggaagtgactgaaactttgtattacctactgggttatgctcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47459" stop="40740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47159" g_stop="46981" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46886" g_stop="46541" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="525" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46229" g_stop="46161" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="594" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46160" i_stop="44259" i_length="1902">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44258" g_stop="44123" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="730" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41195" g_stop="41040" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="886" r_length="156" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E726329" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47159" e_stop="46981"/>
          <exon e_start="46886" e_stop="46541"/>
          <exon e_start="46229" e_stop="46161"/>
          <exon e_start="44258" e_stop="44123"/>
          <exon e_start="41195" e_stop="41040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGCTTGGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAGGTAAGTTCTACTCCATAAACCTTCTCTGAATTTTCCAGAAAAAAACTTTTTTCGCCGGGAAATCTAACATGCGCTACCTGGAAACGTTCTTCAGCCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCATGGTAGGTAATATATTATTATCTGGTTTCTTGTTTAGTTCTCAGTTACATGATGTTAAAAATCTTCTCATGTTTTAAAGTTACTCATAACAGGCAAATAGTTTAGTATGAATTGCTGCTAAATAGTATAGGTCATGCACTAGTTTCCAATCTCAAAGCCTTTTCCTATGTTTTATTACACGCTCTATGTGTACTATTTTCTTTTTTGATGAGTCACGACATAGTGCAAGAGCTAATTTCAAAAGAAAAGTTGGCCATTAGTTGCACCAGGGTATGCGACTCAAGCTGTTCATGAGTTTCTGGAGTTACTCAGACATTACCTGATGGAGGATCATGATACCTTTTAACATGTTGTATGACTTCTGCTCGAATGTTGGGAGCAAGTTTATCCACATAGTGTGGTTACTCAGACATTTTTTGAGTGCATGATGCAGTACAGATAATGTTCTACTTTTTTTTTTTTGAGAAGGTAAAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCTACAACAAATTACAGGTTCCTATTTACAATTGTGGAGAGTAGGAAGATCTTTAATCCTGTAGCAAAATTTACAAGGAACCTAAAACATATGTAACTGATTCTAGATCTATCATGTACTCCTGTTTACACCATAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTTCTCTTGTTTTGGAAGTATATGAGATTTCTTTCTTTCCACACTGACCTCCAGACGCAAGCCGGAATGATTTTTCAACTTTCTTTATGCCCGGAAATGCTTCCATAGCCTATTTTCTACTTTGAAACACTTATTTTTCTTTGCTTTCCTATTTGTGTAAAAAAAGTTTCCTTGATGTGATATTGGTAAGCGCCTTATCATACTGACAAAAAAGGGAGTAAGTTCCCTATTACATGTCCGTTAGATATCTGTACTGCCATCAGCTTTTCTGGTATATCTTTAATCATGTATGCTGATGTGTTATGCATATCTATATGGCTGGTCAGATTTGGAATATGCTTTGTTCAGGAAGTCAAATTATGGAAAGAATTTACCTACACACGGAGTTTACACCAACCAAATAAATGTATGACATGTGCATTTTATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTT</genome_strand>
        <mrna_strand>CCTGGCTTGGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG..............................................................................................CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTNAACGGAAGTGACTGAAACTTTGTATTACCTACTGGGTTATGCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729546" ref_strand="+" ref_description="SGN-E729546 [LA21BE12]">
      <seq>cggtttcatatatctctctcctgtttgttcttcctgcactgtttgctgtttcaggcgcatgacttttgtagtgttacacactcctccttcagtccatggctaaaactcgtacaaatcgtcgaaccctagattcttacactgtcaaatccatcaacaagaccgttcgagccggcgactgcgtgttgatgagagcgtcggagtcgtcaaagccgtcgtacgttgctcgagttgagaagattgagtccgacaatagaggtggcaacgtcagggttcacgtccggtggtactaccgtccggaggagtcgatcggcggccgacgtcagtttcacggctccaaggaactttttatgtccgatcaccgagatatacaaagtgccgacacaattgaaggcaagtgtacggtccacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgtgtactgtaaatgtgaaatgccatacaatcctgatgacctcatggttcaatgtgagggctgcagtgactggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctanattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattataactgcatcagaagcgacaatcatgtagactgatgtnaacggaagtgactgaactttgtattacctactggtttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47447" stop="40745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47148" g_stop="46981" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46886" g_stop="46541" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="514" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46229" g_stop="46161" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="583" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46160" i_stop="44259" i_length="1902">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44258" g_stop="44123" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="719" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41195" g_stop="41045" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="869" r_length="150" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E729546" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47148" e_stop="46981"/>
          <exon e_start="46886" e_stop="46541"/>
          <exon e_start="46229" e_stop="46161"/>
          <exon e_start="44258" e_stop="44123"/>
          <exon e_start="41195" e_stop="41045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAGGTAAGTTCTACTCCATAAACCTTCTCTGAATTTTCCAGAAAAAAACTTTTTTCGCCGGGAAATCTAACATGCGCTACCTGGAAACGTTCTTCAGCCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCATGGTAGGTAATATATTATTATCTGGTTTCTTGTTTAGTTCTCAGTTACATGATGTTAAAAATCTTCTCATGTTTTAAAGTTACTCATAACAGGCAAATAGTTTAGTATGAATTGCTGCTAAATAGTATAGGTCATGCACTAGTTTCCAATCTCAAAGCCTTTTCCTATGTTTTATTACACGCTCTATGTGTACTATTTTCTTTTTTGATGAGTCACGACATAGTGCAAGAGCTAATTTCAAAAGAAAAGTTGGCCATTAGTTGCACCAGGGTATGCGACTCAAGCTGTTCATGAGTTTCTGGAGTTACTCAGACATTACCTGATGGAGGATCATGATACCTTTTAACATGTTGTATGACTTCTGCTCGAATGTTGGGAGCAAGTTTATCCACATAGTGTGGTTACTCAGACATTTTTTGAGTGCATGATGCAGTACAGATAATGTTCTACTTTTTTTTTTTTGAGAAGGTAAAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCTACAACAAATTACAGGTTCCTATTTACAATTGTGGAGAGTAGGAAGATCTTTAATCCTGTAGCAAAATTTACAAGGAACCTAAAACATATGTAACTGATTCTAGATCTATCATGTACTCCTGTTTACACCATAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTTCTCTTGTTTTGGAAGTATATGAGATTTCTTTCTTTCCACACTGACCTCCAGACGCAAGCCGGAATGATTTTTCAACTTTCTTTATGCCCGGAAATGCTTCCATAGCCTATTTTCTACTTTGAAACACTTATTTTTCTTTGCTTTCCTATTTGTGTAAAAAAAGTTTCCTTGATGTGATATTGGTAAGCGCCTTATCATACTGACAAAAAAGGGAGTAAGTTCCCTATTACATGTCCGTTAGATATCTGTACTGCCATCAGCTTTTCTGGTATATCTTTAATCATGTATGCTGATGTGTTATGCATATCTATATGGCTGGTCAGATTTGGAATATGCTTTGTTCAGGAAGTCAAATTATGGAAAGAATTTACCTACACACGGAGTTTACACCAACCAAATAAATGTATGACATGTGCATTTTATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGC</genome_strand>
        <mrna_strand>CGGTTTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG..............................................................................................CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTANATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTNAACGGAAGTGACTG-AACTTTGTATTACCTACTGGTTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235535" ref_strand="+" ref_description="SGN-E235535 [cLED-11-L17]">
      <seq>agaaaccatcaggaatctttgctcgaaagacaaaatccgagtttttaatgcgaaaacagaaagacgccattattttagctatcttaggttgtcaggcctttagtaatattaggtatgtacttttctgcatcgaaaatcttgttttggaaggataccatagtgtgggagaagccttagagctgaatgcatcagattcttgataacctttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtcttcagttaagttttctgctagcatagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcattttcctaaactggtacatcacttgcgtctacttctaacatctgaaatgactgcaactaagtgcaatcaattttcatccaggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattataactgcatcagaggcgacaatcatgtagactgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44976" stop="40788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44676" g_stop="44123" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41195" g_stop="41088" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="662" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E235535" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44676" e_stop="44123"/>
          <exon e_start="41195" e_stop="41088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGT</genome_strand>
        <mrna_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAGGCGACAATCATGTAGACTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729555" ref_strand="+" ref_description="SGN-E729555 [LA21BF09]">
      <seq>acacatcctggcttggctggattcatatatctctctcctgtttgttcttcctgcactgtttgctgtttcaggcgcatgacttttgtagtgttacacactcctccttcagtccatggctaaaactcgtacaaatcgtcgaaccctagattcttacactgtcaaatccatcaacaagaccgttcgagccggcgactgcgtgttgatgagagcgtcggagtcgtcaaagccgtcgtacgttgctcgagttgagaagattgagtccgacaatagaggtggcaacgtcagggttcacgtccggtggtactaccgtccggaggagtcgatcggcggccgacgtcagtttcacggctccaaggaactttttatgtccgatcaccgagatatacaaagtgccgacacaattgaaggcaagtgtacggtccacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgtgtactgtaaatgtgaaatgccatacaatcctgatgacctcatggttcaatgtgagggctgcagtgactggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctgatataaaggttgagtccaaacgccgacggaggtaatacttatttggccagcggtatgcaagcaaacactgaggcaattataactgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47465" stop="40815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47165" g_stop="46981" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46886" g_stop="46541" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="531" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46229" g_stop="46161" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="600" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46160" i_stop="44259" i_length="1902">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44258" g_stop="44123" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="736" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41195" g_stop="41115" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="817" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E729555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47165" e_stop="46981"/>
          <exon e_start="46886" e_stop="46541"/>
          <exon e_start="46229" e_stop="46161"/>
          <exon e_start="44258" e_stop="44123"/>
          <exon e_start="41195" e_stop="41115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCCTGGCTTGGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAGGTAAGTTCTACTCCATAAACCTTCTCTGAATTTTCCAGAAAAAAACTTTTTTCGCCGGGAAATCTAACATGCGCTACCTGGAAACGTTCTTCAGCCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCATGGTAGGTAATATATTATTATCTGGTTTCTTGTTTAGTTCTCAGTTACATGATGTTAAAAATCTTCTCATGTTTTAAAGTTACTCATAACAGGCAAATAGTTTAGTATGAATTGCTGCTAAATAGTATAGGTCATGCACTAGTTTCCAATCTCAAAGCCTTTTCCTATGTTTTATTACACGCTCTATGTGTACTATTTTCTTTTTTGATGAGTCACGACATAGTGCAAGAGCTAATTTCAAAAGAAAAGTTGGCCATTAGTTGCACCAGGGTATGCGACTCAAGCTGTTCATGAGTTTCTGGAGTTACTCAGACATTACCTGATGGAGGATCATGATACCTTTTAACATGTTGTATGACTTCTGCTCGAATGTTGGGAGCAAGTTTATCCACATAGTGTGGTTACTCAGACATTTTTTGAGTGCATGATGCAGTACAGATAATGTTCTACTTTTTTTTTTTTGAGAAGGTAAAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCTACAACAAATTACAGGTTCCTATTTACAATTGTGGAGAGTAGGAAGATCTTTAATCCTGTAGCAAAATTTACAAGGAACCTAAAACATATGTAACTGATTCTAGATCTATCATGTACTCCTGTTTACACCATAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTTCTCTTGTTTTGGAAGTATATGAGATTTCTTTCTTTCCACACTGACCTCCAGACGCAAGCCGGAATGATTTTTCAACTTTCTTTATGCCCGGAAATGCTTCCATAGCCTATTTTCTACTTTGAAACACTTATTTTTCTTTGCTTTCCTATTTGTGTAAAAAAAGTTTCCTTGATGTGATATTGGTAAGCGCCTTATCATACTGACAAAAAAGGGAGTAAGTTCCCTATTACATGTCCGTTAGATATCTGTACTGCCATCAGCTTTTCTGGTATATCTTTAATCATGTATGCTGATGTGTTATGCATATCTATATGGCTGGTCAGATTTGGAATATGCTTTGTTCAGGAAGTCAAATTATGGAAAGAATTTACCTACACACGGAGTTTACACCAACCAAATAAATGTATGACATGTGCATTTTATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAGGTGAGCCCATTGCTAGATTAACACAAGCATCCTGGTTAACCTTTTTGATCCATCTTTCTATTATCTAAGTTGACATAAGTTTCTTATTTTCTATTTTCCTTGCCCTACATTCACTGATGTAGCTTGCTGTATTCATTCAAAACATGCTGGTAGGAAGAACAATGACAAAAAAGAAAAAGTGATTTTAGACTAGACATGCTTAGTAAAGCCTAAGTTACTCGGACTCGGGTGCGGATATCCGGATGCGAATCCGAGTTGGATTCGGCAAAATCTAAATTTTAAGATTCGGGGTGCAAACCCGAATATGGATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAATATAATTATAAATATATTCTAACTATATATAATAAAATATCACTAAAAAGATTTATGAAATATATATAATAATTAATTGGATATTTTTGTATAATTGCATACAAAATAAAAGAAGTATAATCGTTAAAGAAGAGTGAGAATATAATAAACATTAAAAGTTTAATTTATTTTATAATTAAAAGGACACTCTTATCTAGAGAAACCCTTTGTCTCTAGTTTTCTTTTTCAAGAAAAACTGAAGAGACTACTTTTTCAAGAAAGATAAAAAAGCTTTGTATTCTCTGTATGTATTTTTTCAAGAAACTTTTTTAAGTTTCATGTACTTTTTCAATCTTTATTCTCTTTAACTTTCTCAAGCTTTATCTTGAAAAGTAGCTCCGCCTCCCCTCGGAAGACGTCGTCGGAAACTGATTTTTGTTTCCCCAAAAATTTTCTCGGCTCTGGTCAAAGTTCAGATCGGATTGACCGAATCCAACACTCACCCTGCACCCGCACTAGGGTTGCTTCAAGACGGGTTCGCCGGCAAAAATGAAGAGTCCGCACAACATAGAGTAAAGTTGCTGGTTTATTTTACCATTTGTTACATGTGATGAGTGTAGCAGCTTGGGTGTGTAATCCATCATCTTTTGCAACATACTAGTAATGCCAAAGAAAGGTAAATAGCTAATTTCATCATACTGGGTGGGGTGCTATGTTGCGCGGACTCTTCATTTTTGCCGGCAAATCCGTCTTGGCGCGACCCGGGCACGGGTGCGGGGTGCGTGTCGAATTCAGTCAATCTAATCCGGACACTTTGACCAGAGCCGAGAAAATATTTGGGAAAACAGAAATCAGTTTCCCGCGATGTCTTCCGAGGGGAGGCAGAGCTACTTTTTAAGATGAAGTGTTGAGAAAGATAAAGATTGGAAAAGTACATGAAACTTAAAAAGTACAGAAAAGAGGAGTTGAAAAAGTAGTCTCTTCAGTTTTTCTTGATAAAGAAAACTAGAGACGAAGGGTTTCTCTAGATAAGTGTGTCCTTTTAATCATAAAATAAATTATACTTTTAATGGTTGTTATATTTTCACCCTTCTTTAACAATTATACTTCTTTTATTATATATGCAATTAATTATTATATAGATTTCATAAATATTTTTAGTGACATTCTATTGTATATAGTTAAAATATATATTTATAATATTGAAATTTTTTAGCCGTATCCATATTCGGATTCGCACGCACGAATTTTAATATTTAGATTTTGCCGATTCCGACTCTCGGATACCCGCACCCTAGTCCGAGTATCATAGGTGGGGTGGGGGTGTTGGAAAGAGATCTGAGTACTTAAAGCTCCTTTTAAAATAGCGAACATGAAGGAAAAGGTAATTGGTAGGAGAAGAATGTTGGAATAAGAGATACACAGGTGAAATGCAAGAGGAAAATATCATCTGAGATTTATACATCTTTTCTGAAATATATCTTCTCTATCCACCCTGGCAACTCATGATGGTAAAGACAAAATTGATGAAAAATAATTATGTCTCAGTAATAAAGCTGCTTTATTAAGGGAAGCAAGTACTATCCTTTTCTTTTTTCGGAAAACTGGTCATGTTAGTTCTAAGCATCCTTTTCATTTCTGCTCCGTCACTTCTTTAATTAGCCTTGACCTTCCCTAAACAAGTGTACAATGTAATATATGCACATCCTTACTGTTATTAAGTAATTTATTAGTTTTTTTGGTGAAAATATGGGCTAAATTTCGATACATATTTATATGGTGAAACAAAATCTGGGAAACGGAAGATTCTCCAATGAACATCCAATGCTGAATATGGTCTGATTCTGTGCAAAAGTTAATTGGTCTAGGGCATTCCATATACATTCCGAGACTATTTATGTACACTCTTGAGAGTATTTTGCTCGGGGGTAATGACGCAGCTGATGAGGTTCTAGATGTTGTCTATTTCTGGCTGAAAATTAATACATTAGGTAAGGTTGCCTTCAGATTCTATGGAAGAATGTTGAACGATGATAGTATAGTAGTCAAGTATGGATATTATGGGAAGTGGGGACACAAGAATCCACCTTAGTTTTGGAATGATTTCTCAATTAAAAGAACAAAAATAGATGTGCGTATTTTGTGATTTTTGTTATCAAAAAGACATTTTCTGCAAGGGGTTGTTTGGTAAGGGGGATTGGATAGACAGTTATCCCACCATATATATAGGATAACTTATCCCATCATTAAATAGTCGTGGGACTAACTAATACCCTTAACCAAACATAGGATAGAATAAGGAATCCTACATTGTATCTCGGGATTATTATCCTCGTCTGTCCTACCAAACGACTTCTAAGATTAAGTTCCTAGCTGGAATTCTATAGAATTTATTTAACGTCTTTTTTGGCGAACTGATCTTTTTCTGTGGGAGTAAACATGATTTCTAGTGTTATACTCACAACTCTGACAAAATCAGCTCTTAGCTGGAGCGCTTTAGATTTTATTTTCTATAATATTTTGTTTGGTGGTTATTGTCATATATATATATGCTACTGAAGCCTCAAATTACAAAATTTGACCCGAGTATTTCAGGTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATC</genome_strand>
        <mrna_strand>ACACATCCTGGCTTGGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG..............................................................................................CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239725" ref_strand="+" ref_description="SGN-E239725 [cLED-33-I5]">
      <seq>agaaaccatcaggaatctttgctcgaaagacaaaatccgagtttttaatgcgaaaacagaaagacgccattattttagctatcttaggttgtcaggcctttagtaatattaggtatgtacttttctgcatcgaaaatcttgttttggaaggataccatagtgtgggagaagccttagagctgaatgcatcagattcttgataacctttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtcttcagttaagttttctgctagcatagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcattttcctaaactggtacatcacttgcgtctacttctaacatctgaaatgactgcaactaagtgcaatcaattttcatccaggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44976" stop="43830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44676" g_stop="44130" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E239725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44676" e_stop="44130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGA</genome_strand>
        <mrna_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235325" ref_strand="+" ref_description="SGN-E235325 [cLED-11-M8]">
      <seq>agaaaccatcaggaatctttgctcgaaagacaaaatccgagtttttaatgcgaaaacagaaagacgccattattttagctatcttaggttgtcaggcctttagtaatattaggtatgtacttttctgcatcgaaaatcttgttttggaaggataccatagtgtgggagaagccttagagctgaatgcatcagattcttgataacctttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtcttcagttaagttttctgctagcatagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcattttcctaaactggtacatcacttgcgtctacttctaacatctgaaatgactgcaactaagtgcaatcaattttcatccaggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgctaaattctcatgctacttcaagacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44976" stop="43832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44676" g_stop="44132" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E235325" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44676" e_stop="44132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCT</genome_strand>
        <mrna_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231018" ref_strand="+" ref_description="SGN-E231018 [cLED-5-K16]">
      <seq>aaggaactttttatgtccgatcaccgagatatacaaagtgccgacacaattgaaggcaagtgtacggtccacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgtgtactgtaaatgtgaaatgccatacaatcctgatgacctcatggttcaatgtgagggctgcagtgactggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttcttttgccaaaattgttcatctgaagatcagaagaaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47019" stop="43860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46719" g_stop="46541" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46229" g_stop="46161" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="248" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46160" i_stop="44259" i_length="1902">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44258" g_stop="44160" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="347" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E231018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46719" e_stop="46541"/>
          <exon e_start="46229" e_stop="46161"/>
          <exon e_start="44258" e_stop="44160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCATGGTAGGTAATATATTATTATCTGGTTTCTTGTTTAGTTCTCAGTTACATGATGTTAAAAATCTTCTCATGTTTTAAAGTTACTCATAACAGGCAAATAGTTTAGTATGAATTGCTGCTAAATAGTATAGGTCATGCACTAGTTTCCAATCTCAAAGCCTTTTCCTATGTTTTATTACACGCTCTATGTGTACTATTTTCTTTTTTGATGAGTCACGACATAGTGCAAGAGCTAATTTCAAAAGAAAAGTTGGCCATTAGTTGCACCAGGGTATGCGACTCAAGCTGTTCATGAGTTTCTGGAGTTACTCAGACATTACCTGATGGAGGATCATGATACCTTTTAACATGTTGTATGACTTCTGCTCGAATGTTGGGAGCAAGTTTATCCACATAGTGTGGTTACTCAGACATTTTTTGAGTGCATGATGCAGTACAGATAATGTTCTACTTTTTTTTTTTTGAGAAGGTAAAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCTACAACAAATTACAGGTTCCTATTTACAATTGTGGAGAGTAGGAAGATCTTTAATCCTGTAGCAAAATTTACAAGGAACCTAAAACATATGTAACTGATTCTAGATCTATCATGTACTCCTGTTTACACCATAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTTCTCTTGTTTTGGAAGTATATGAGATTTCTTTCTTTCCACACTGACCTCCAGACGCAAGCCGGAATGATTTTTCAACTTTCTTTATGCCCGGAAATGCTTCCATAGCCTATTTTCTACTTTGAAACACTTATTTTTCTTTGCTTTCCTATTTGTGTAAAAAAAGTTTCCTTGATGTGATATTGGTAAGCGCCTTATCATACTGACAAAAAAGGGAGTAAGTTCCCTATTACATGTCCGTTAGATATCTGTACTGCCATCAGCTTTTCTGGTATATCTTTAATCATGTATGCTGATGTGTTATGCATATCTATATGGCTGGTCAGATTTGGAATATGCTTTGTTCAGGAAGTCAAATTATGGAAAGAATTTACCTACACACGGAGTTTACACCAACCAAATAAATGTATGACATGTGCATTTTATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCT</genome_strand>
        <mrna_strand>AAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230970" ref_strand="+" ref_description="SGN-E230970 [cLED-5-K1]">
      <seq>agaaaccatcatgaatctttgctcgaaagacaaaatccgagtttttaatgcgaaaacagaaagacgccattattttagctatcttaggttgtcaggcctttagtaatattaggtatgtacttttctgcatcgaaaatcttgttttggaaggataccagagtgtgggagaagccttaaagctgaatgcatcagattcttgataacctttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtcttcagttaagttttctgctagcatagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcatttttctaaactggtacatcacttgcgtctacttctaacatctgaaatgactgcaactaagtgcaatcaattttcatccaggtttcaccctacttgtatagacatgacgccagaggaagccaagagacttgaccacttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44976" stop="43897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44676" g_stop="44197" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E230970" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44676" e_stop="44197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTT</genome_strand>
        <mrna_strand>AGAAACCATCATGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCAGAGTGTGGGAGAAGCCTTAAAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTTCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210157" ref_strand="+" ref_description="SGN-E210157 [cLEC-40-J12]">
      <seq>ttcaggcgcatgacttttgtagtgttacacactcctccttcagtccatggctaaaactcgtacaaatcgtcgaaccctagattcttacactgtcaaatccatcaacaagaccgttcgagccggcgactgcgtgttgatgagagcgtcggagtcgtcaaagccgtcgtacgttgctcgagttgagaagattgagtccgacaatagaggtggcaacgtcagggttcacgtccggtggtactaccgtccggaggagtcgatcggcggccgacgtcagtttcacggctccaaggaactttttatgtccgatcaccgagatatacaaagtgccgacacaattgaaggcaagtgtacggtccacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgtgtactgtaaatgtgaaatgccatacaatcctgatgacctcatggttcaatgtgagggctgcagtgactggtttcaccctacttgtatagacatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47399" stop="43931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47099" g_stop="46981" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46886" g_stop="46541" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="465" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46229" g_stop="46161" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="534" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46160" i_stop="44259" i_length="1902">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44258" g_stop="44231" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="562" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E210157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47099" e_stop="46981"/>
          <exon e_start="46886" e_stop="46541"/>
          <exon e_start="46229" e_stop="46161"/>
          <exon e_start="44258" e_stop="44231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAGGTAAGTTCTACTCCATAAACCTTCTCTGAATTTTCCAGAAAAAAACTTTTTTCGCCGGGAAATCTAACATGCGCTACCTGGAAACGTTCTTCAGCCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCATGGTAGGTAATATATTATTATCTGGTTTCTTGTTTAGTTCTCAGTTACATGATGTTAAAAATCTTCTCATGTTTTAAAGTTACTCATAACAGGCAAATAGTTTAGTATGAATTGCTGCTAAATAGTATAGGTCATGCACTAGTTTCCAATCTCAAAGCCTTTTCCTATGTTTTATTACACGCTCTATGTGTACTATTTTCTTTTTTGATGAGTCACGACATAGTGCAAGAGCTAATTTCAAAAGAAAAGTTGGCCATTAGTTGCACCAGGGTATGCGACTCAAGCTGTTCATGAGTTTCTGGAGTTACTCAGACATTACCTGATGGAGGATCATGATACCTTTTAACATGTTGTATGACTTCTGCTCGAATGTTGGGAGCAAGTTTATCCACATAGTGTGGTTACTCAGACATTTTTTGAGTGCATGATGCAGTACAGATAATGTTCTACTTTTTTTTTTTTGAGAAGGTAAAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCTACAACAAATTACAGGTTCCTATTTACAATTGTGGAGAGTAGGAAGATCTTTAATCCTGTAGCAAAATTTACAAGGAACCTAAAACATATGTAACTGATTCTAGATCTATCATGTACTCCTGTTTACACCATAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTTCTCTTGTTTTGGAAGTATATGAGATTTCTTTCTTTCCACACTGACCTCCAGACGCAAGCCGGAATGATTTTTCAACTTTCTTTATGCCCGGAAATGCTTCCATAGCCTATTTTCTACTTTGAAACACTTATTTTTCTTTGCTTTCCTATTTGTGTAAAAAAAGTTTCCTTGATGTGATATTGGTAAGCGCCTTATCATACTGACAAAAAAGGGAGTAAGTTCCCTATTACATGTCCGTTAGATATCTGTACTGCCATCAGCTTTTCTGGTATATCTTTAATCATGTATGCTGATGTGTTATGCATATCTATATGGCTGGTCAGATTTGGAATATGCTTTGTTCAGGAAGTCAAATTATGGAAAGAATTTACCTACACACGGAGTTTACACCAACCAAATAAATGTATGACATGTGCATTTTATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACG</genome_strand>
        <mrna_strand>TTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG..............................................................................................CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCCTACTTGTATAGACATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237486" ref_strand="+" ref_description="SGN-E237486 [cLED-19-C22]">
      <seq>agaaaccatcaggaatctttgctcgaaagacaaaatccgagtttttaatgcgaaaacagaaagacgccattattttagctatcttaggttgtcaggcctttagtaatattaggtatgtacttttctgcatcgaaaatcttgttttggaaggataccatagtgtgggagaagccttagagctgaatgcatcagattcttgataacctttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtcttcagttaagttttctgctagcatagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcattttcctaaactggtacatcacttgcgtctacttctaacatctgaaatgactgcaactaagtgcaatcaattttcatccaggtttcaccctacttgtatagacatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44976" stop="43931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44676" g_stop="44231" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E237486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44676" e_stop="44231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACG</genome_strand>
        <mrna_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237627" ref_strand="+" ref_description="SGN-E237627 [cLED-19-K1]">
      <seq>agaaaccatcaggaatctttgctcgaaagacaaaatccgagtttttaatgcgaaaacagaaagacgccattattttagctatcttaggttgtcaggcctttagtaatattaggtatgtacttttctgcatcgaaaatcttgttttggaaggataccatagtgtgggagaagccttagagctgaatgcatcagattcttgataacctttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtcttcagttaagttttctgctagcatagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcattttcctaaactggtacatcacttgcgtctacttctaacatctgaaatgactgcaactaagtgcaatcaattttcatccaggtttcaccctacttgtatagacatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44976" stop="43931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44676" g_stop="44231" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E237627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44676" e_stop="44231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACG</genome_strand>
        <mrna_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243447" ref_strand="+" ref_description="SGN-E243447 [cLED-34-I18]">
      <seq>agaaaccatcaggaatctttgctcgaaagacaaaatccgagtttttaatgcgaaaacagaaagacgccattattttagctatcttaggttgtcaggcctttagtaatattaggtatgtacttttctgcatcgaaaatcttgttttggaaggataccatagtgtgggagaagccttagagctgaatgcatcagattcttgataacctttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtcttcagttaagttttctgctagcatagttgcatgattaaagccattcatatgtcaagattcttaagcaacaaagcattttcctaaactggtacatcacttgcgtctacttctaacatctgaaatgactgcaactaagtgcaatcaattttcatccagggttcaccctacttgtatagacatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="44976" stop="43932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44676" g_stop="44232" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E243447" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44676" e_stop="44232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGAC</genome_strand>
        <mrna_strand>AGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGGTTCACCCTACTTGTATAGACATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253600" ref_strand="+" ref_description="SGN-E253600 [cLEG-32-E13]">
      <seq>tatcactgaaccatagttaattaacactttctctcctcaaattattacttaatcaagttaattgaagggttctgatttgaaaaattgaatgttggtaaggtttttgtgtttaacaatatattcatagtgggatagacgaagtttaacatgacagactctcttgtagtatgttaacaatttatttcagagggttttgatatttctgatcaatttatttccattgtggtttgaacaccagagttcttgttaagtttggagatttggtctgttttgttttttactctgcttgtattgaactttcatctctccacctatctgcaactaggttgggcaaaagagcgaatgaagaaaccatcaggaatctttgctcgaaagacaaaatccgagtttttaatgcgaaaacagaaagacgccattattttagctatcttaggttgtcaggcctttagtaatattaggtatgtacttttctgcatcgaaaatcttgttttggaaggataccatagtgtgggagaagccttagagctgaatgcatcagattcttgataacctttcccgactggattcaggtgaaaatatggatttttttgtttaagggctgacatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="45322" stop="44115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45022" g_stop="44415" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E253600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45022" e_stop="44415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTC</genome_strand>
        <mrna_strand>TATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259970" ref_strand="+" ref_description="SGN-E259970 [cLEG-51-J5]">
      <seq>tatcactgaaccatagttaattaacactttctctcctcaaattattacttaatcaagttaattgaagggttctgatttgaaaaattgaatgttggtaaggtttttgtgtttaacaatatattcatagtgggatagacgaagtttaacatgacagactctcttgtagtatgttaacaatttatttcagagggttttgatatttctgatcaatttatttccattgtggtttgaacaccagagttcttgttaagtttggagatttggtctgttttgttttttactctgcttgtattgaactttcatctctccacctatctgcaactaggttgggcaaaagagcgaatgaagaaaccatcaggaatctttgctcgaaagacaaaatccgagtttttaatgcgaaaacagaaagacgccattattttaactatcttaggttgtcaggcctttagtaatattaagtatgtacttttctgcatccaaaatcttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="45322" stop="44233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45022" g_stop="44533" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E259970" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45022" e_stop="44533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTT</genome_strand>
        <mrna_strand>TATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAACTATCTTAGGTTGTCAGGCCTTTAGTAATATTAAGTATGTACTTTTCTGCATCCAAAATCTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355644" ref_strand="+" ref_description="SGN-E355644 [cLHT-1-L23]">
      <seq>acttttgtagtgttacacactcctccttcagtccatggctaaaactcgtacaaatcgtcgaaccctagattcttacactgtcaaatccatcaacaagaccgttcgagccggcgactgcgtgttgatgagagcgtcggagtcgtcaaagccgtcgtacgttgctcgagttgagaagattgagtccgacaatagaggtggcaacgtcagggttcacgtccggtggtactaccgtccggaggagtcgatcggcggccgacgtcagtttcacggctccaaggaactttttatgtccgatcaccgcgatatacaaagtgccgacacaattgaaggcaagtgtacggtccacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgtgtactgtaaatgtgaaatgccatacaatcctgatgacctcatggttcaatgtgagggctgcagtgactggtaagtctgatccttcacatttttctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47387" stop="45832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47087" g_stop="46981" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46886" g_stop="46541" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="453" r_length="346" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46229" g_stop="46132" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="551" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E355644" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47087" e_stop="46981"/>
          <exon e_start="46886" e_stop="46541"/>
          <exon e_start="46229" e_stop="46132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAGGTAAGTTCTACTCCATAAACCTTCTCTGAATTTTCCAGAAAAAAACTTTTTTCGCCGGGAAATCTAACATGCGCTACCTGGAAACGTTCTTCAGCCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCAT</genome_strand>
        <mrna_strand>ACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG..............................................................................................CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGCGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267592" ref_strand="+" ref_description="SGN-E267592 [cLEI-8-D23]">
      <seq>ttggctggattcatatatctctctcctgtttgttcttcctgcactgtttgctgtttcaggcgcatgacttttgtagtgttacacactcctccttcagtccatggctaaaactcgtacaaatcgtcgaaccctagattcttacactgtcaaatccatcaacaagaccgttcgagccggcgactgcgtgttgatgagagcgtcggagtcgtcaaagccgtcgtacgttgctcgagttgagaagattgagtccgacaatagaggtggcaacgtcagggttcacgtccggtggtactaccgtccggaggagtcgatcggcggccgacgtcagtttcacggctccaaggaactttttatgtccgatcaccgagatatacaaagtgccgacacaattgaaggcaagtgtacggtccacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgtgtactgtaaatgtgaaatgccatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47453" stop="45905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47153" g_stop="46981" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46886" g_stop="46541" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="519" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46229" g_stop="46205" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="544" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E267592" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47153" e_stop="46981"/>
          <exon e_start="46886" e_stop="46541"/>
          <exon e_start="46229" e_stop="46205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAGGTAAGTTCTACTCCATAAACCTTCTCTGAATTTTCCAGAAAAAAACTTTTTTCGCCGGGAAATCTAACATGCGCTACCTGGAAACGTTCTTCAGCCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCATAC</genome_strand>
        <mrna_strand>TTGGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG..............................................................................................CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729095" ref_strand="+" ref_description="SGN-E729095 [LA19DH08]">
      <seq>gattcatatanctctctcctgtttgttcttcctgcactgtttgctgtttcaggcgcatgacttttgtagtgttacacactcctccttcagtccatggctaaaactcgtacaaatcgtcgaaccctagattcttacactgtcaaatccatcaacaagaccgttcgagccggcgactgcgtgttgatgagagcgtcggagtcgtcaaagccgtcgtacgttgctcgagttgagaagattgagtccgacaatagaggtggcaacgtcagggttcacgtccggtggtactaccgtccggaggagtcgaacggcggccgacgtcagtttcacggctccaaggaactttttatgtccgatcaccgagatatacaaagtgccgacacaattgaaggcaagtgtacggggcacacattcaagagctacaccaaactcgacgctgttgggaacgaagacttcttttgccgatttgactacaattcttctaccggagcatttaatcctgacagagttgctgagtactgtaaatgtgaaatgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="47446" stop="45907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47146" g_stop="46981" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46886" g_stop="46541" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="512" r_length="346" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46229" g_stop="46207" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="535" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E729095" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47146" e_stop="46981"/>
          <exon e_start="46886" e_stop="46541"/>
          <exon e_start="46229" e_stop="46207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAGGTAAGTTCTACTCCATAAACCTTCTCTGAATTTTCCAGAAAAAAACTTTTTTCGCCGGGAAATCTAACATGCGCTACCTGGAAACGTTCTTCAGCCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGTGTATGTACAAAATTTGTTAAAAATTGTGGCTTTTCTCCTTACAATCTCTATTTAATTAGTACTTTGTAAAAAAGTGGTAATTGACTTCAGATTTTTGCATTATCAGTAATTAATGATTTGGTAATAGCTTGTTGAGGAGCAGTAATTTATTTTTCTGCATAATGTTTTCAGTTTAAAGACATTTATATGGTTTCGTGCTTTTATGTAGCTACAATACTAACTACGTGATGTTTACAAGGAAACAACATCTTTTTGGAAGTTTTTGACCTTAAATTTATCACTAAGTATTCTTTCTGGTCCTAATTTGGCAGGTACTGTAAATGTGAAATGCCAT</genome_strand>
        <mrna_strand>GATTCATATANCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG..............................................................................................CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGAACGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGGGCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGA.......................................................................................................................................................................................................................................................................................................................GTACTGTAAATGTGAAATGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352946" ref_strand="+" ref_description="SGN-E352946 [cTOS-14-A13]">
      <seq>aatgggatgaagtattgaaaataagaggttcattgcgaggaactgggatatcaaaggagcctggatggagttctttgtgaaatgcattttcagtacaataaatccttgcacctgctctttacttgttggtgtatgaatgttcttcaaggcagggaacattcaaaggagctgggagagatcaaggtactgatgcgatctgaactagacaatttactttgctgaattcagacgtcactaattattctctcttgcggatggtttcaaccacgaagaatatataacaaatgttttataaagataatgtagtcattttcgtgtataaacacagtcaaacacactaaaataccatcagggaatggccttggcaagtgccggtgtgtctcaacaacgtggatgtacgcctcttgcagttccatcaacaatcaaccaagcacatctgcagtgatttcctagtttaactttagtatagggttcttctgtcatcccatgaactggttctgctggtaagtatttctcaagaacatgagatatatacttcatcaaataaaagaaaaataatacatttctctaaagggattgaggagaaaatttggataatttcattttcttggttccagtaggtatttattgaaatcattgaatggtgataactatatctaacaaaattaacattttttttgtttccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="50596" stop="51881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50896" g_stop="51588" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E352946" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50896" e_stop="51588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGATGAAGTATTGAAAATAAGAGGTTCATTGCGAGGAACTGGGATATCAAAGGAGCCTGGATGGAGTTCTTTGTGAAATGCATTTTCAGTACAATAAATCCTTGCACCTGCTCTTTACTTGTTGGTGTATGAATGTTCTTCAAGGCAGGGAACATTCAAAGGAGCTGGGAGAGATCAAGGTACTGATGCGATCTGAACTAGACAATTTACTTTGCTGAATTCAGACGTCACTAATTATTCTCTCTTGCGGATGGTTTCAACCACGAAGAATATATAACAAATGTTTTATAAAGATAATGTAGTCATTTTCGTGTATAAACACAGTCAAACACACTAAAATACCATCAGGGAATGGCCTTGGCAAGTGCCGGTGTGTCTCAACAACGTGGATGTACGCCTCTTGCAGTTCCATCAACAATCAACCAAGCACATCTGCAGTGATTTCCTAGTTTAACTTTAGTATAGGGTTCTTCTGTCATCCCATGAACTGGTTCTGCTGGTAAGTATTTCTCAAGAACATGAGATATATACTTCATCAAATAAAAGAAAAATAATACATTTCTCTAAAGGGATTGAGGAGAAAATTTGGATAATTTCATTTTCTTGTTTCCAGTAGGTATTTATTGAAATCATTGAATGGTGATAACTATATCTAACAAAATTAACATTTTTTTGGTTTCCATTGTTCG</genome_strand>
        <mrna_strand>AATGGGATGAAGTATTGAAAATAAGAGGTTCATTGCGAGGAACTGGGATATCAAAGGAGCCTGGATGGAGTTCTTTGTGAAATGCATTTTCAGTACAATAAATCCTTGCACCTGCTCTTTACTTGTTGGTGTATGAATGTTCTTCAAGGCAGGGAACATTCAAAGGAGCTGGGAGAGATCAAGGTACTGATGCGATCTGAACTAGACAATTTACTTTGCTGAATTCAGACGTCACTAATTATTCTCTCTTGCGGATGGTTTCAACCACGAAGAATATATAACAAATGTTTTATAAAGATAATGTAGTCATTTTCGTGTATAAACACAGTCAAACACACTAAAATACCATCAGGGAATGGCCTTGGCAAGTGCCGGTGTGTCTCAACAACGTGGATGTACGCCTCTTGCAGTTCCATCAACAATCAACCAAGCACATCTGCAGTGATTTCCTAGTTTAACTTTAGTATAGGGTTCTTCTGTCATCCCATGAACTGGTTCTGCTGGTAAGTATTTCTCAAGAACATGAGATATATACTTCATCAAATAAAAGAAAAATAATACATTTCTCTAAAGGGATTGAGGAGAAAATTTGGATAATTTCATTTTCTTGGTTCCAGTAGGTATTTATTGAAATCATTGAATGGTGATAACTATATCTAACAAAATTAACATTTTTTTTGTTTCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537764" ref_strand="+" ref_description="SGN-E537764 [TUS-56-I15](-)">
      <seq>ggtggggttgagaggcgagcccatgaacttggcttcaaatgcaatatctgctgctgaatgggtaggaggctctttgattgcaagacagcgacaacctcttacatggtacaaggtatatttcaatgcaccaggaggaagtgatccattagcactggacatgggtagtatgggaaaaggtcaagtatggatcaatggacagagcattggaagatactggaccgcttatgccactggtaactgcagtccttgtacttatgcagctacatacagacaaggaaagtgccaatctggttgcggccagccaactcaaagatggtaccacgttcctcgatcttggttgaagccaactgggaacttgctggtagtttttgaggagataggtggggatgcatcaaagatttctcttgtcaaacggtcaattacacatgtatagatatgatattatttaggtaccactaattagaaagtaaagtttggtctcatagaacgaaatagttcaatgaaaaaactcctatgctagttttttcagcaataattagcttatttgctttgcaaaattatctttgttcaaaatacggttgcaatgccactgcttgtcttcctcatcagtgtatatatatttacaagttattgttggaaaaaagaattctgatcaaaatttcaattttcaattgctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="53221" stop="51545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52921" g_stop="52810" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52809" i_stop="52488" i_length="322">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52487" g_stop="52285" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="315" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52284" i_stop="52211" i_length="74">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52210" g_stop="51846" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="680" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E537764" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52921" e_stop="52810"/>
          <exon e_start="52487" e_stop="52285"/>
          <exon e_start="52210" e_stop="51846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAGGTATATATTTTTGCTTCTGTACATATGGAGGACAGGACAGAAGAATTTCCAAATTGAACTGCTTTACAGATGATTATTACTTGAGGAAAAAAGTAATACGAAGAACCCTTAAAAAATGTACTCGCTGATGGAGATCACTTGTATACTATTTGCTGTAACTTTTGAAACATCAGAATTGATCACACTTCCTGATATTAAGAGTTAGATAATTGATGTTTGAAGATAAGATTAATATTTTTGTATAGAGCTGTAGTAATGAGAAATGAAAAGGTGGAACCTTGATCATGACCATGAATACTGAGATTCTTCATGAAACTTTCAGGTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATGGTATGCAGATAACTTTAGTATGTTACTTGATAAATGAGAAGATGCTAACTCTTTAACATATTGGTTTGTTTTAGGTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGGGAACTTGCTGGTAGTTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTCTTGTCAAACGGTCAATTACACATGTATAGATATGATATTATTTAGGTACCACTAATTAGAAAGTAAAGTTTGGTCTCATAGAACGAAATAGTTCAATGAAAAAACTCCTATGCTAGTTTTTTCAGCAATAATTAGCTTATTTGCTTTGCAAAATTATCTTTGTTCAAAATACGGTTGCAATGCCACTGCTTGTCTTCCTCATCAGTGTATATATATTTACAAGTTATTGTTGGAAAAAAGAATTCTGATCAAAATTTCAATTTTCAATTGCTTTAG</genome_strand>
        <mrna_strand>GGTGGGGTTGAGAGGCGAGCCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAG..................................................................................................................................................................................................................................................................................................................................GTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATG..........................................................................GTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGGGAACTTGCTGGTAGTTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTCTTGTCAAACGGTCAATTACACATGTATAGATATGATATTATTTAGGTACCACTAATTAGAAAGTAAAGTTTGGTCTCATAGAACGAAATAGTTCAATGAAAAAACTCCTATGCTAGTTTTTTCAGCAATAATTAGCTTATTTGCTTTGCAAAATTATCTTTGTTCAAAATACGGTTGCAATGCCACTGCTTGTCTTCCTCATCAGTGTATATATATTTACAAGTTATTGTTGGAAAAAAGAATTCTGATCAAAATTTCAATTTTCAATTGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370174" ref_strand="+" ref_description="SGN-E370174 [TUS-28-I14](-)">
      <seq>gattgccgaacaacggagcacgttatgagacatggagtgcaggagtccttgggccagtcgttcttcatgggctagacaagggtcaaagggacttatcatggcagaaatggtcatatcaggtggggttgagaggcgaggccatgaacttggcttcaaatgcaatatctgctgctgaatgggtaggaggctctttgattgcaagacagcgacaacctcttacatggtacaaggtatatttcaatgcaccaggaggaagtgatccattagcactggacatgggtagtatgggaaaaggtcaagtatggatcaatggacagagcattggaagatactggaccgcttatgccactggtaactgcagtccttgtacttatgcagctacatacagacaaggaaagtgccaatctggttgcggccagccaactcaaagatggtaccacgttcctcgatcttggttgaagccaactgggaacttgctggtagtttttgaggagataggtggggatgcatcaaagatttctcttgtcaaacggtcaattacacatgtatagatatgatattatttaggtaccactaattagaaagtaaagtttggtctcatagaacgaaatagttcaatgaaaaaactcctatgctagttttttcagcaataattagcttatttgctttgcaaaattatctttgttcaaaatacggttgcaatgccactgcttgtcttcctcatcagtgtatatatatttacaagttattgtggaaaaaagaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="53413" stop="51577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53350" g_stop="53343" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53342" i_stop="53107" i_length="236">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53106" g_stop="52996" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="119" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52995" i_stop="52921" i_length="75">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52920" g_stop="52810" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="230" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52809" i_stop="52488" i_length="322">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52487" g_stop="52285" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="433" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52284" i_stop="52211" i_length="74">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52210" g_stop="51877" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="766" r_length="333" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E370174" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53350" e_stop="53343"/>
          <exon e_start="53106" e_stop="52996"/>
          <exon e_start="52920" e_stop="52810"/>
          <exon e_start="52487" e_stop="52285"/>
          <exon e_start="52210" e_stop="51877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCCGGTTAGTCTCTTTTTTAAGACTCACACTCAAGATATCAAAGATTCTCAATAAATTCAATATGAGGGGAACAAATGTCAGATTTTTAGAATAAATAGCAACAACTAAGTTTTACAACTTGAGTTTGGGCATGGATGGTGGGAAGATATTTCTGCATTGTGGATCCCATAAATCACTTATCACTTTCTTGCTTGTCAAAATTGGTTTCACCTTTGTGTGTTGGTTTGTTGTAATTGAAGAACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAGGTGCCAATCCTAATTTCTTGTTCATGCTTTGGCCTCTTAGATGTCCTCACCACAACTTTGAATGTTTTTGCACAGGTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAGGTATATATTTTTGCTTCTGTACATATGGAGGACAGGACAGAAGAATTTCCAAATTGAACTGCTTTACAGATGATTATTACTTGAGGAAAAAAGTAATACGAAGAACCCTTAAAAAATGTACTCGCTGATGGAGATCACTTGTATACTATTTGCTGTAACTTTTGAAACATCAGAATTGATCACACTTCCTGATATTAAGAGTTAGATAATTGATGTTTGAAGATAAGATTAATATTTTTGTATAGAGCTGTAGTAATGAGAAATGAAAAGGTGGAACCTTGATCATGACCATGAATACTGAGATTCTTCATGAAACTTTCAGGTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATGGTATGCAGATAACTTTAGTATGTTACTTGATAAATGAGAAGATGCTAACTCTTTAACATATTGGTTTGTTTTAGGTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGGGAACTTGCTGGTAGTTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTCTTGTCAAACGGTCAATTACACATGTATAGATATGATATTATTTAGGTACCACTAATTAGAAAGTAAAGTTTGGTCTCATAGAACGAAATAGTTCAATGAAAAAACTCCTATGCTAGTTTTTTCAGCAATAATTAGCTTATTTGCTTTGCAAAATTATCTTTGTTCAAAATACGGTTGCAATGCCACTGCTTGTCTTCCTCATCAGTGTATATATATTTACAAGTTATTGTTGGAAAAAAGAATTC</genome_strand>
        <mrna_strand>GATTGCCG............................................................................................................................................................................................................................................AACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAG...........................................................................GTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAG..................................................................................................................................................................................................................................................................................................................................GTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATG..........................................................................GTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGGGAACTTGCTGGTAGTTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTCTTGTCAAACGGTCAATTACACATGTATAGATATGATATTATTTAGGTACCACTAATTAGAAAGTAAAGTTTGGTCTCATAGAACGAAATAGTTCAATGAAAAAACTCCTATGCTAGTTTTTTCAGCAATAATTAGCTTATTTGCTTTGCAAAATTATCTTTGTTCAAAATACGGTTGCAATGCCACTGCTTGTCTTCCTCATCAGTGTATATATATTTACAAGTTATTG-TGGAAAAAAGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247555" ref_strand="+" ref_description="SGN-E247555 [cLEF-42-M24]">
      <seq>cgttatgagacatggagtgcaagagtccttgggccagtcgttcttcatgggctagacaagggtcaaagggacttatcatggcagaaatggtcatatcaggtggggttgagaggcgaggccatgaacttggcttcaaatgcaatatctgctgctgaatgggtaggaggctctttgattgcaagacagcgacaacctcttacatggtacaaggtatatttcaatgcaccaggaggaagcgatccattagcactggacatgggtagtatgggaaaaggtcaagtatggatcaatggacagagcattggaagatactggaccgcttatgccactggtaactgcagtccttgtacttatgcagctacatacagacaaggaaagtgccaatctggttgcggccagccaactcaaagatggtaccacgttcctcgatcttggttgaagccaactgggaacttgctggtagtttttgaggagataggtggggatgcatcaaagatttctcttgtcaaacggtcaattacacatgtatagatatgatattatttangtaccactaattagaaaagtaagtttggtctcatagaacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="53394" stop="51735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53094" g_stop="52996" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52995" i_stop="52921" i_length="75">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52920" g_stop="52810" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="210" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52809" i_stop="52488" i_length="322">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52487" g_stop="52285" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="413" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52284" i_stop="52211" i_length="74">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52210" g_stop="52035" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="589" r_length="176" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E247555" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53094" e_stop="52996"/>
          <exon e_start="52920" e_stop="52810"/>
          <exon e_start="52487" e_stop="52285"/>
          <exon e_start="52210" e_stop="52035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAGGTGCCAATCCTAATTTCTTGTTCATGCTTTGGCCTCTTAGATGTCCTCACCACAACTTTGAATGTTTTTGCACAGGTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAGGTATATATTTTTGCTTCTGTACATATGGAGGACAGGACAGAAGAATTTCCAAATTGAACTGCTTTACAGATGATTATTACTTGAGGAAAAAAGTAATACGAAGAACCCTTAAAAAATGTACTCGCTGATGGAGATCACTTGTATACTATTTGCTGTAACTTTTGAAACATCAGAATTGATCACACTTCCTGATATTAAGAGTTAGATAATTGATGTTTGAAGATAAGATTAATATTTTTGTATAGAGCTGTAGTAATGAGAAATGAAAAGGTGGAACCTTGATCATGACCATGAATACTGAGATTCTTCATGAAACTTTCAGGTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATGGTATGCAGATAACTTTAGTATGTTACTTGATAAATGAGAAGATGCTAACTCTTTAACATATTGGTTTGTTTTAGGTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGGGAACTTGCTGGTAGTTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTCTTGTCAAACGGTCAATTACACATGTATAGATATGATATTATTTAGGTACCACTAATTAGAAAGTAAAGTTTGGTCTCATAGAACGAA</genome_strand>
        <mrna_strand>CGTTATGAGACATGGAGTGCAAGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAG...........................................................................GTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAG..................................................................................................................................................................................................................................................................................................................................GTATATTTCAATGCACCAGGAGGAAGCGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATG..........................................................................GTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGGGAACTTGCTGGTAGTTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTCTTGTCAAACGGTCAATTACACATGTATAGATATGATATTATTTANGTACCACTAATTAGAAAAGTAAGTTTGGTCTCATAGAACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327896" ref_strand="+" ref_description="SGN-E327896 [cTOC-22-C14]">
      <seq>caggccatgccttgcacgtttatgttaatggacggctttcaggttcagtttatggaaaccgagaaaaccgaatagttacatttacaggaggtgttaacctgcatgctggaataaacagaatttctctactcagtgtagctgttggattgccgaacaacggagcacgttatgagacatggagtgcaagagtccttgggccagtcgttcttcatgggctatacaagggtcaaagggacttatcatggcataaatggacatatcaggtggggttgagaggcgaggccatgaacttggcttcaaatgcaatatctgctgctgaatgggtaggaggctctttgattgcaagacagcgacaacctcttacatggtacaaggtatatttcaatgcaccaggaggaagtgatccattagcactggacatgggtagtatgggaaaaggtcaagtatggatcaatggacagagcattggaagatactggaccgcttatgccactggtaactgcagtccttgtacttatgcagctacatacagacaaggatagtgccaatctggttgcggccagccaactcaaagatggtaccacgttcctcgatcttggttgaagccaactgcgaacttgctggtagtttttgaggagatacgtggggatgcatcaaagatgtctcttgtcaaacggtcaattacacatgtatagatatgatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="53892" stop="51781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53592" g_stop="53551" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53550" i_stop="53453" i_length="98">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53452" g_stop="53343" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="152" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53342" i_stop="53107" i_length="236">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53106" g_stop="52996" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="263" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52995" i_stop="52921" i_length="75">
            <donor d_prob="0.909" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52920" g_stop="52810" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="374" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52809" i_stop="52488" i_length="322">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52487" g_stop="52285" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="577" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52284" i_stop="52211" i_length="74">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52210" g_stop="52081" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="707" r_length="130" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E327896" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53592" e_stop="53551"/>
          <exon e_start="53452" e_stop="53343"/>
          <exon e_start="53106" e_stop="52996"/>
          <exon e_start="52920" e_stop="52810"/>
          <exon e_start="52487" e_stop="52285"/>
          <exon e_start="52210" e_stop="52081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCCATGCCTTGCACGTTTATGTTAATGGACGGCTTTCAGGTGCAAATGCTCTCCTTTAGTTGACTCATGGTAACATTTTATTGTTGAGAAACATCAAATGTTAGATTCCTTTTAAGAGTTCCCGGTTCCATTTACAGGTTCAGTTTATGGAAACCGAGAAAACCGAAGAGTTACATTTACAGGAGGTGTTAACCTGCATGCTGGAATAAACAGAATTTCTCTACTCAGTGTAGCTGTTGGATTGCCGGTTAGTCTCTTTTTTAAGACTCACACTCAAGATATCAAAGATTCTCAATAAATTCAATATGAGGGGAACAAATGTCAGATTTTTAGAATAAATAGCAACAACTAAGTTTTACAACTTGAGTTTGGGCATGGATGGTGGGAAGATATTTCTGCATTGTGGATCCCATAAATCACTTATCACTTTCTTGCTTGTCAAAATTGGTTTCACCTTTGTGTGTTGGTTTGTTGTAATTGAAGAACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAGGTGCCAATCCTAATTTCTTGTTCATGCTTTGGCCTCTTAGATGTCCTCACCACAACTTTGAATGTTTTTGCACAGGTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAGGTATATATTTTTGCTTCTGTACATATGGAGGACAGGACAGAAGAATTTCCAAATTGAACTGCTTTACAGATGATTATTACTTGAGGAAAAAAGTAATACGAAGAACCCTTAAAAAATGTACTCGCTGATGGAGATCACTTGTATACTATTTGCTGTAACTTTTGAAACATCAGAATTGATCACACTTCCTGATATTAAGAGTTAGATAATTGATGTTTGAAGATAAGATTAATATTTTTGTATAGAGCTGTAGTAATGAGAAATGAAAAGGTGGAACCTTGATCATGACCATGAATACTGAGATTCTTCATGAAACTTTCAGGTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATGGTATGCAGATAACTTTAGTATGTTACTTGATAAATGAGAAGATGCTAACTCTTTAACATATTGGTTTGTTTTAGGTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGGGAACTTGCTGGTAGTTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTCTTGTCAAACGGTCAATTACACATGTATAGATATGATATTAT</genome_strand>
        <mrna_strand>CAGGCCATGCCTTGCACGTTTATGTTAATGGACGGCTTTCAG..................................................................................................GTTCAGTTTATGGAAACCGAGAAAACCGAATAGTTACATTTACAGGAGGTGTTAACCTGCATGCTGGAATAAACAGAATTTCTCTACTCAGTGTAGCTGTTGGATTGCCG............................................................................................................................................................................................................................................AACAACGGAGCACGTTATGAGACATGGAGTGCAAGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTATACAAGGGTCAAAGGGACTTATCATGGCATAAATGGACATATCAG...........................................................................GTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAG..................................................................................................................................................................................................................................................................................................................................GTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGATAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATG..........................................................................GTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGCGAACTTGCTGGTAGTTTTTGAGGAGATACGTGGGGATGCATCAAAGATGTCTCTTGTCAAACGGTCAATTACACATGTATAGATATGATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739338" ref_strand="+" ref_description="SGN-E739338 [LC17AB10]">
      <seq>gctctgacatccactgcacaaatgctgcccacaaatgtacaactgcgcacttgggaaacatttagcgaagatgtatccaccattgacgcggattcaaagttcactgttgttggtctgttggagcaattaaatgttaccagggatatgagtgactacctttggtacaccactagcgtcgagataaattcagctgaatcatttctacaccgagggcaacatcctactcttgctgtgcagtcagcaggccatgccttgcacgtttatgttaatggacggctttcaggttcagtttatggaaaccgagaaaaccgaagagttacatttacaggaggtgttaacctgcatgctggaataaacagaatttctctactcagtgtagctgttggattgccgaacaacggagcacgttatgagacatggagtgcaggagtccttgggccagtcgttcttcatgggctagacaagggtcaaagggacttatcatggcagaaatggtcatatcaggtggggttgagaggcgaggccatgaacttggcttcaaatgcaatatctgctgctgaatgggtaggaggctctttgattgcaagacagcgacaacctcttacatggtacaaggtatatttcaatgcaccaggaggaagtgatccattagcactggacatgggtagtatgggaaaaggtcaagtatggatcaatggacagagcattggaagatactggaccgcttatgccactggtaactgcagtccttgtacttatgcagctacatacagacaaggaaagtgccaatctggttgcggccagccaactcaaagatggtaccacgttcctcgatcttgggtgaagccaactgggaacttgctggtagttttttgaggagataggtggggatgcatcaaagatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="54202" stop="51822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53907" g_stop="53735" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53734" i_stop="53661" i_length="74">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53660" g_stop="53551" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="283" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53550" i_stop="53453" i_length="98">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53452" g_stop="53343" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="393" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53342" i_stop="53107" i_length="236">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53106" g_stop="52996" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="504" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52995" i_stop="52921" i_length="75">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52920" g_stop="52810" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="615" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52809" i_stop="52488" i_length="322">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52487" g_stop="52285" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="818" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52284" i_stop="52211" i_length="74">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52210" g_stop="52122" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="908" r_length="90" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E739338" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53907" e_stop="53735"/>
          <exon e_start="53660" e_stop="53551"/>
          <exon e_start="53452" e_stop="53343"/>
          <exon e_start="53106" e_stop="52996"/>
          <exon e_start="52920" e_stop="52810"/>
          <exon e_start="52487" e_stop="52285"/>
          <exon e_start="52210" e_stop="52122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGACATCCACTGCACAAATGCTGCCCACAAATGTACAACTGCGCACTTGGGAAACATTTAGCGAAGATGTATCCACCATTGACGCGGATTCAAAGTTCACTGTTGTTGGTCTGTTGGAGCAATTAAATGTTACCAGGGATATGAGTGACTACCTTTGGTACACCACTAGGTATGAAAGAAAACATTTTATATGCCTGCTGACAAACGTGTATATCTGTCTGACCATGTCATTGAACTTTTTAGCGTCGAGATAAATTCAGCTGAATCATTTCTACACCGAGGGCAACATCCTACTCTTGCTGTGCAGTCAGCAGGCCATGCCTTGCACGTTTATGTTAATGGACGGCTTTCAGGTGCAAATGCTCTCCTTTAGTTGACTCATGGTAACATTTTATTGTTGAGAAACATCAAATGTTAGATTCCTTTTAAGAGTTCCCGGTTCCATTTACAGGTTCAGTTTATGGAAACCGAGAAAACCGAAGAGTTACATTTACAGGAGGTGTTAACCTGCATGCTGGAATAAACAGAATTTCTCTACTCAGTGTAGCTGTTGGATTGCCGGTTAGTCTCTTTTTTAAGACTCACACTCAAGATATCAAAGATTCTCAATAAATTCAATATGAGGGGAACAAATGTCAGATTTTTAGAATAAATAGCAACAACTAAGTTTTACAACTTGAGTTTGGGCATGGATGGTGGGAAGATATTTCTGCATTGTGGATCCCATAAATCACTTATCACTTTCTTGCTTGTCAAAATTGGTTTCACCTTTGTGTGTTGGTTTGTTGTAATTGAAGAACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAGGTGCCAATCCTAATTTCTTGTTCATGCTTTGGCCTCTTAGATGTCCTCACCACAACTTTGAATGTTTTTGCACAGGTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAGGTATATATTTTTGCTTCTGTACATATGGAGGACAGGACAGAAGAATTTCCAAATTGAACTGCTTTACAGATGATTATTACTTGAGGAAAAAAGTAATACGAAGAACCCTTAAAAAATGTACTCGCTGATGGAGATCACTTGTATACTATTTGCTGTAACTTTTGAAACATCAGAATTGATCACACTTCCTGATATTAAGAGTTAGATAATTGATGTTTGAAGATAAGATTAATATTTTTGTATAGAGCTGTAGTAATGAGAAATGAAAAGGTGGAACCTTGATCATGACCATGAATACTGAGATTCTTCATGAAACTTTCAGGTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATGGTATGCAGATAACTTTAGTATGTTACTTGATAAATGAGAAGATGCTAACTCTTTAACATATTGGTTTGTTTTAGGTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGGGAACTTGCTGGTAG-TTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTC</genome_strand>
        <mrna_strand>GCTCTGACATCCACTGCACAAATGCTGCCCACAAATGTACAACTGCGCACTTGGGAAACATTTAGCGAAGATGTATCCACCATTGACGCGGATTCAAAGTTCACTGTTGTTGGTCTGTTGGAGCAATTAAATGTTACCAGGGATATGAGTGACTACCTTTGGTACACCACTAG..........................................................................CGTCGAGATAAATTCAGCTGAATCATTTCTACACCGAGGGCAACATCCTACTCTTGCTGTGCAGTCAGCAGGCCATGCCTTGCACGTTTATGTTAATGGACGGCTTTCAG..................................................................................................GTTCAGTTTATGGAAACCGAGAAAACCGAAGAGTTACATTTACAGGAGGTGTTAACCTGCATGCTGGAATAAACAGAATTTCTCTACTCAGTGTAGCTGTTGGATTGCCG............................................................................................................................................................................................................................................AACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAG...........................................................................GTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAG..................................................................................................................................................................................................................................................................................................................................GTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATG..........................................................................GTACCACGTTCCTCGATCTTGGGTGAAGCCAACTGGGAACTTGCTGGTAGTTTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370175" ref_strand="+" ref_description="SGN-E370175 [TUS-28-I14]">
      <seq>tacctttggtacaccactagcgtcgagataaattcagctgaatcatttctacaccgagggcaacatcctactcttgctgtgcagtcagcaggccatgccttgcacgtttatgttaatggacggctttcaggttcagtttatggaaaccgagaaaaccgaagagttacatttacaggaggtgttaacctgcatgctggaataaacagaatttctctactcagtgtagctgttggattgccgaacaacggagcacgttatgagacatggagtgcaggagtccttgggccagtcgttcttcatgggctagacaagggtcaaagggacttatcatggcagaaatggtcatatcaggtggggttgagaggcgaggccatgaacttggcttcaaatgcaatatctgctgctgaatgggtaggaggctctttgattgcaagacagcgacaacctcttacatggtacaaggtatatttcaatgcaccaggaggaagtgatccattagcactggacatgggtagtatgggaaaaggtcaagtatggatcaatggacagagcattggaagatactggaccgcttatgccactggtaactgcagtccttgtacttatgcagctacatacagacaaggaaagtgccaatctggttgcggccagccaactcaaagatggtaccacgttcctcgatcttggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="54054" stop="51886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53754" g_stop="53735" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53734" i_stop="53661" i_length="74">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53660" g_stop="53551" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="130" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53550" i_stop="53453" i_length="98">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53452" g_stop="53343" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="240" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53342" i_stop="53107" i_length="236">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53106" g_stop="52996" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="351" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52995" i_stop="52921" i_length="75">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52920" g_stop="52810" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="462" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52809" i_stop="52488" i_length="322">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52487" g_stop="52285" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="665" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52284" i_stop="52211" i_length="74">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52210" g_stop="52186" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="690" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E370175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53754" e_stop="53735"/>
          <exon e_start="53660" e_stop="53551"/>
          <exon e_start="53452" e_stop="53343"/>
          <exon e_start="53106" e_stop="52996"/>
          <exon e_start="52920" e_stop="52810"/>
          <exon e_start="52487" e_stop="52285"/>
          <exon e_start="52210" e_stop="52186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTTGGTACACCACTAGGTATGAAAGAAAACATTTTATATGCCTGCTGACAAACGTGTATATCTGTCTGACCATGTCATTGAACTTTTTAGCGTCGAGATAAATTCAGCTGAATCATTTCTACACCGAGGGCAACATCCTACTCTTGCTGTGCAGTCAGCAGGCCATGCCTTGCACGTTTATGTTAATGGACGGCTTTCAGGTGCAAATGCTCTCCTTTAGTTGACTCATGGTAACATTTTATTGTTGAGAAACATCAAATGTTAGATTCCTTTTAAGAGTTCCCGGTTCCATTTACAGGTTCAGTTTATGGAAACCGAGAAAACCGAAGAGTTACATTTACAGGAGGTGTTAACCTGCATGCTGGAATAAACAGAATTTCTCTACTCAGTGTAGCTGTTGGATTGCCGGTTAGTCTCTTTTTTAAGACTCACACTCAAGATATCAAAGATTCTCAATAAATTCAATATGAGGGGAACAAATGTCAGATTTTTAGAATAAATAGCAACAACTAAGTTTTACAACTTGAGTTTGGGCATGGATGGTGGGAAGATATTTCTGCATTGTGGATCCCATAAATCACTTATCACTTTCTTGCTTGTCAAAATTGGTTTCACCTTTGTGTGTTGGTTTGTTGTAATTGAAGAACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAGGTGCCAATCCTAATTTCTTGTTCATGCTTTGGCCTCTTAGATGTCCTCACCACAACTTTGAATGTTTTTGCACAGGTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAGGTATATATTTTTGCTTCTGTACATATGGAGGACAGGACAGAAGAATTTCCAAATTGAACTGCTTTACAGATGATTATTACTTGAGGAAAAAAGTAATACGAAGAACCCTTAAAAAATGTACTCGCTGATGGAGATCACTTGTATACTATTTGCTGTAACTTTTGAAACATCAGAATTGATCACACTTCCTGATATTAAGAGTTAGATAATTGATGTTTGAAGATAAGATTAATATTTTTGTATAGAGCTGTAGTAATGAGAAATGAAAAGGTGGAACCTTGATCATGACCATGAATACTGAGATTCTTCATGAAACTTTCAGGTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATGGTATGCAGATAACTTTAGTATGTTACTTGATAAATGAGAAGATGCTAACTCTTTAACATATTGGTTTGTTTTAGGTACCACGTTCCTCGATCTTGGTTG</genome_strand>
        <mrna_strand>TACCTTTGGTACACCACTAG..........................................................................CGTCGAGATAAATTCAGCTGAATCATTTCTACACCGAGGGCAACATCCTACTCTTGCTGTGCAGTCAGCAGGCCATGCCTTGCACGTTTATGTTAATGGACGGCTTTCAG..................................................................................................GTTCAGTTTATGGAAACCGAGAAAACCGAAGAGTTACATTTACAGGAGGTGTTAACCTGCATGCTGGAATAAACAGAATTTCTCTACTCAGTGTAGCTGTTGGATTGCCG............................................................................................................................................................................................................................................AACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAG...........................................................................GTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAG..................................................................................................................................................................................................................................................................................................................................GTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATG..........................................................................GTACCACGTTCCTCGATCTTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270947" ref_strand="+" ref_description="SGN-E270947 [cLEM-6-P14]">
      <seq>tacctttggtacaccactagcgtcgagataaattcagctgaatcatttctacaccgagggcaacatcctactcttgctgtgcagtcagcaggccatgccttgcacgtttatgttaatggacggctttcaggttcagtttatggaaaccgagaaaaccgaagagttacatttacaggaggtgttaacctgcatgctggaataaacagaatttctctactcagtgtagctgttggattgccgaacaacggagcacgttatgagacatggagtgcaggagtccttgggccagtcgttcttcatgggctagacaagggtcaaagggacttatcatggcagaaatggtcatatcangtggggttgagaggcgaggccatgaacttggcttcaaatgcaatatctgctgctgaatgggtaggaggctctttgattgcaagacagcgacaacctcttacatggtacaaggtatatttcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="54054" stop="52501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53754" g_stop="53735" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53734" i_stop="53661" i_length="74">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53660" g_stop="53551" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="130" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53550" i_stop="53453" i_length="98">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53452" g_stop="53343" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="240" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53342" i_stop="53107" i_length="236">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53106" g_stop="52996" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="351" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52995" i_stop="52921" i_length="75">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52920" g_stop="52796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="476" r_length="125" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E270947" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53754" e_stop="53735"/>
          <exon e_start="53660" e_stop="53551"/>
          <exon e_start="53452" e_stop="53343"/>
          <exon e_start="53106" e_stop="52996"/>
          <exon e_start="52920" e_stop="52796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTTGGTACACCACTAGGTATGAAAGAAAACATTTTATATGCCTGCTGACAAACGTGTATATCTGTCTGACCATGTCATTGAACTTTTTAGCGTCGAGATAAATTCAGCTGAATCATTTCTACACCGAGGGCAACATCCTACTCTTGCTGTGCAGTCAGCAGGCCATGCCTTGCACGTTTATGTTAATGGACGGCTTTCAGGTGCAAATGCTCTCCTTTAGTTGACTCATGGTAACATTTTATTGTTGAGAAACATCAAATGTTAGATTCCTTTTAAGAGTTCCCGGTTCCATTTACAGGTTCAGTTTATGGAAACCGAGAAAACCGAAGAGTTACATTTACAGGAGGTGTTAACCTGCATGCTGGAATAAACAGAATTTCTCTACTCAGTGTAGCTGTTGGATTGCCGGTTAGTCTCTTTTTTAAGACTCACACTCAAGATATCAAAGATTCTCAATAAATTCAATATGAGGGGAACAAATGTCAGATTTTTAGAATAAATAGCAACAACTAAGTTTTACAACTTGAGTTTGGGCATGGATGGTGGGAAGATATTTCTGCATTGTGGATCCCATAAATCACTTATCACTTTCTTGCTTGTCAAAATTGGTTTCACCTTTGTGTGTTGGTTTGTTGTAATTGAAGAACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAGGTGCCAATCCTAATTTCTTGTTCATGCTTTGGCCTCTTAGATGTCCTCACCACAACTTTGAATGTTTTTGCACAGGTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAGGTATATATTTTTGC</genome_strand>
        <mrna_strand>TACCTTTGGTACACCACTAG..........................................................................CGTCGAGATAAATTCAGCTGAATCATTTCTACACCGAGGGCAACATCCTACTCTTGCTGTGCAGTCAGCAGGCCATGCCTTGCACGTTTATGTTAATGGACGGCTTTCAG..................................................................................................GTTCAGTTTATGGAAACCGAGAAAACCGAAGAGTTACATTTACAGGAGGTGTTAACCTGCATGCTGGAATAAACAGAATTTCTCTACTCAGTGTAGCTGTTGGATTGCCG............................................................................................................................................................................................................................................AACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAN...........................................................................GTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAGGTATATTTCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705745" ref_strand="+" ref_description="SGN-E705745 [FA28AB02]">
      <seq>gctccaggtcatgcatacatgacttgggcagctaaaatggctgttgaaatgggtactggggtcccgtgggtcatgtgcaaggaggatgatgcccctgatccagtgataaacacctgcaatggtttttattgtgattatttttcccctaacaaacctaacaagccaacaatatggacagaggcatggagtggctggtttgatgattttggcggtccagttcatcatcgaccagttgaagatttggcctttgcagtagctcggttcattcaaaaaggtggctctttggtgaattattatatgtatcacgggggaaccaactttggaagaacagctggagggccttttatcactaccagctatgactatgatgctcctattgatgaatatggcttgattaggcagccaaagtatgaccatttgaaggagcttcataaggctgtcaagttatgtgaaccagcactaatttctgctgatcctaccgttactgtcttagggaactatgaacaggcacatgtattttcttccggctctggacattgtgctgcttttcttgcaaattaccatttgagttcaactgcaagggtgacatttaggcaccaacattacgatctgccaccttggtcaataagcattcttccagattgtaaaaatgttgtatataatactgccagggttggagtcaagacatccactgcacaaatgctgcccacaaatgtacaactgcgcacttgggaaacatttagcgaagatgtatccaccattgacgcggattcaaagttcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="56429" stop="53502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56129" g_stop="56025" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56024" i_stop="55795" i_length="230">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55794" g_stop="55706" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="194" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55705" i_stop="55621" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55620" g_stop="55515" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="300" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55514" i_stop="55033" i_length="482">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55032" g_stop="54945" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="388" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54944" i_stop="54850" i_length="95">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54849" g_stop="54731" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="507" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54730" i_stop="54384" i_length="347">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54383" g_stop="54219" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="672" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54218" i_stop="53914" i_length="305">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53913" g_stop="53802" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="784" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E705745" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56129" e_stop="56025"/>
          <exon e_start="55794" e_stop="55706"/>
          <exon e_start="55620" e_stop="55515"/>
          <exon e_start="55032" e_stop="54945"/>
          <exon e_start="54849" e_stop="54731"/>
          <exon e_start="54383" e_stop="54219"/>
          <exon e_start="53913" e_stop="53802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTGGTAAGATGTTTTTTCGCACTATACAAGATTGGATTTGCTTTGTTCATTGAGTAAACTGAGTGCAACACTCAATTCTTATGGCTCCTTCTTTCAACTTGTTTCGATTTGTCCCTCATATTACCAGATTAGGAAATATTTCTTATAGAAAGTCAATTATATAGGAAAGCTGATTGTGAGTGCTTGGGATTACCTAGTGTTATGCTAAACTTAAAGTCTTATTTTGGTGACAGATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTGGTAAATTCATTATACTTGGCATTTGCTGTATGATTAATACTTTTCCATGTTGGGATGATTTACTCAAGTTTCTTCATGTGTAAAGGTTTGATGATTTTGGCGGTCCAGTTCATCATCGACCAGTTGAAGATTTGGCCTTTGCAGTAGCTCGGTTCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATGGTGGGTGGATTTCCTACAGCTTTTGAAATCTCATTACTGCAGCTCCTGTACATGGAATTTAACTAATAACTACTTCTCCGAAGTTCTATATCAATTGATGATATGCCTGTTGTTTAAAAGTGCATGTCTATTATGTTGATGCACGAAATTTGTAATGCAAAATTACCCGTGCTTCGGAAAATAATCTTCTATAGTTATCTGAATTGTCATCTTGACCCATCACCAAGTCTTAACTGTTAAATTCAGTGGCTTTTATGTACTTCTCATTCTTCAGACATTACATATTAAAGTCTTACCAAATGAGTGTATGAAAATGGTATCAAGAGCTCTACTACACTAGTCATTTCTAAAAAAATTAAGGATATAAATAATTTTACTTATAAACAATCAAGAGATTTACTGGCGCTATGGAATCAATCATGCGTGCAACTTGTGATGATACTTTTTACCTTAACTGATGTTTCTTTTTTCTCTTTGAACAGTATCACGGGGGAACCAACTTTGGAAGAACAGCTGGAGGGCCTTTTATCACTACCAGCTATGACTATGATGCTCCTATTGATGAATATGGTCAGAGACTGAGCTAGTACCATTTAGATGCACAACTTCACATGTAGTTCAAATTCTTCGTATATACTAACTAGTTCCCCGTGCTTATTTTATAGGCTTGATTAGGCAGCCAAAGTATGACCATTTGAAGGAGCTTCATAAGGCTGTCAAGTTATGTGAACCAGCACTAATTTCTGCTGATCCTACCGTTACTGTCTTAGGGAACTATGAACAGGTGCCTTTCTTATCTCTTTTCCTCGTTTTGTTGACTCTTTTCATCAGATTTTTGGGGGTAGGGGTGTTACTATGAGTAGACACGGATGCCAGTTGATGCGGAGTACCACAACACCCACCACTACTGCTTTGAGGAAGCGGGTGCAAATTAAAAAGAAATATTGGTTTCTTAAGTATTTCAACCCTGACACAGAGAATGAGTATGCAAATCAATGTTTAAATTTCTAATGAATATAGATGATCAATAATTCTTTGTTCTCTCTGTTTATTACATTGACATATTCTTTTACATATCCGATTCATATATGTTTGACCTTCTAAAACTCTGAAATCTTCTCCATTTTGCAGGCACATGTATTTTCTTCCGGCTCTGGACATTGTGCTGCTTTTCTTGCAAATTACCATTTGAGTTCAACTGCAAGGGTGACATTTAGGCACCAACATTACGATCTGCCACCTTGGTCAATAAGCATTCTTCCAGATTGTAAAAATGTTGTATATAATACTGCCAGGGTATGTATATATTACAATAGTAACTTCTGTTGTATGTCCTCTTCTTTTATTCATTGGAGCTGAAGAGTCGTTCACAAATAAATATTTCCCCGTTGCTAACGTTAGGTTATAATCATTCTTAATATACCATCTACTCCCTACTTCCTAAGAAAATAATAAATTCATAATAGTTGACAATGTTGTGTCTACTAAACAAACACTTGGCATTTTATTCCCATTAACATGATCTACAAAGATGAAAACTGAAGCTACTAGGAGGTACTCAGTTGCCAACTTACAGTGTATTTTTTTGCTCTTCAAATCAGGTTGGAGTCAAGACATCCACTGCACAAATGCTGCCCACAAATGTACAACTGCGCACTTGGGAAACATTTAGCGAAGATGTATCCACCATTGACGCGGATTCAAAGTTCACTG</genome_strand>
        <mrna_strand>GCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTG......................................................................................................................................................................................................................................ATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTG.....................................................................................GTTTGATGATTTTGGCGGTCCAGTTCATCATCGACCAGTTGAAGATTTGGCCTTTGCAGTAGCTCGGTTCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCACGGGGGAACCAACTTTGGAAGAACAGCTGGAGGGCCTTTTATCACTACCAGCTATGACTATGATGCTCCTATTGATGAATATG...............................................................................................GCTTGATTAGGCAGCCAAAGTATGACCATTTGAAGGAGCTTCATAAGGCTGTCAAGTTATGTGAACCAGCACTAATTTCTGCTGATCCTACCGTTACTGTCTTAGGGAACTATGAACAG...........................................................................................................................................................................................................................................................................................................................................................GCACATGTATTTTCTTCCGGCTCTGGACATTGTGCTGCTTTTCTTGCAAATTACCATTTGAGTTCAACTGCAAGGGTGACATTTAGGCACCAACATTACGATCTGCCACCTTGGTCAATAAGCATTCTTCCAGATTGTAAAAATGTTGTATATAATACTGCCAGG.................................................................................................................................................................................................................................................................................................................GTTGGAGTCAAGACATCCACTGCACAAATGCTGCCCACAAATGTACAACTGCGCACTTGGGAAACATTTAGCGAAGATGTATCCACCATTGACGCGGATTCAAAGTTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246470" ref_strand="+" ref_description="SGN-E246470 [cLEF-52-J23]">
      <seq>tcattcaaaaaggtggctctttggtgaattattatatgtatgacgggggaaccaactttggaagaacagctggagggccttttatcactaccagctatgactatgatgctcctattgatgaatatggcttgattaggcagccaaagtatgaccatttgaaggagcttcataaggctgtcaagttatgtgaaccagcactaatttctgctgatcctaccgttactgtcttagggaactatgaacaggcacatgtattttcttccggctctggacattgtgctgcttttcttgcaaattaccatttgagttcaactgcaagggtgacatttaggcaccaacattacgatctgccaccttggtcaataagcattcttccagattgtaaaaatgttgtatataatactgccagggttggagtcaagacattcactgcacaaatgctgcccacaaatgtacaactgcgcacttgggaaacatttatcgaagatgtatacaccattgacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="55852" stop="53519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55552" g_stop="55515" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55514" i_stop="55033" i_length="482">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55032" g_stop="54945" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="126" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54944" i_stop="54850" i_length="95">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54849" g_stop="54731" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="245" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54730" i_stop="54384" i_length="347">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54383" g_stop="54219" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="410" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54218" i_stop="53914" i_length="305">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53913" g_stop="53819" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="505" r_length="95" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E246470" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55552" e_stop="55515"/>
          <exon e_start="55032" e_stop="54945"/>
          <exon e_start="54849" e_stop="54731"/>
          <exon e_start="54383" e_stop="54219"/>
          <exon e_start="53913" e_stop="53819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATGGTGGGTGGATTTCCTACAGCTTTTGAAATCTCATTACTGCAGCTCCTGTACATGGAATTTAACTAATAACTACTTCTCCGAAGTTCTATATCAATTGATGATATGCCTGTTGTTTAAAAGTGCATGTCTATTATGTTGATGCACGAAATTTGTAATGCAAAATTACCCGTGCTTCGGAAAATAATCTTCTATAGTTATCTGAATTGTCATCTTGACCCATCACCAAGTCTTAACTGTTAAATTCAGTGGCTTTTATGTACTTCTCATTCTTCAGACATTACATATTAAAGTCTTACCAAATGAGTGTATGAAAATGGTATCAAGAGCTCTACTACACTAGTCATTTCTAAAAAAATTAAGGATATAAATAATTTTACTTATAAACAATCAAGAGATTTACTGGCGCTATGGAATCAATCATGCGTGCAACTTGTGATGATACTTTTTACCTTAACTGATGTTTCTTTTTTCTCTTTGAACAGTATCACGGGGGAACCAACTTTGGAAGAACAGCTGGAGGGCCTTTTATCACTACCAGCTATGACTATGATGCTCCTATTGATGAATATGGTCAGAGACTGAGCTAGTACCATTTAGATGCACAACTTCACATGTAGTTCAAATTCTTCGTATATACTAACTAGTTCCCCGTGCTTATTTTATAGGCTTGATTAGGCAGCCAAAGTATGACCATTTGAAGGAGCTTCATAAGGCTGTCAAGTTATGTGAACCAGCACTAATTTCTGCTGATCCTACCGTTACTGTCTTAGGGAACTATGAACAGGTGCCTTTCTTATCTCTTTTCCTCGTTTTGTTGACTCTTTTCATCAGATTTTTGGGGGTAGGGGTGTTACTATGAGTAGACACGGATGCCAGTTGATGCGGAGTACCACAACACCCACCACTACTGCTTTGAGGAAGCGGGTGCAAATTAAAAAGAAATATTGGTTTCTTAAGTATTTCAACCCTGACACAGAGAATGAGTATGCAAATCAATGTTTAAATTTCTAATGAATATAGATGATCAATAATTCTTTGTTCTCTCTGTTTATTACATTGACATATTCTTTTACATATCCGATTCATATATGTTTGACCTTCTAAAACTCTGAAATCTTCTCCATTTTGCAGGCACATGTATTTTCTTCCGGCTCTGGACATTGTGCTGCTTTTCTTGCAAATTACCATTTGAGTTCAACTGCAAGGGTGACATTTAGGCACCAACATTACGATCTGCCACCTTGGTCAATAAGCATTCTTCCAGATTGTAAAAATGTTGTATATAATACTGCCAGGGTATGTATATATTACAATAGTAACTTCTGTTGTATGTCCTCTTCTTTTATTCATTGGAGCTGAAGAGTCGTTCACAAATAAATATTTCCCCGTTGCTAACGTTAGGTTATAATCATTCTTAATATACCATCTACTCCCTACTTCCTAAGAAAATAATAAATTCATAATAGTTGACAATGTTGTGTCTACTAAACAAACACTTGGCATTTTATTCCCATTAACATGATCTACAAAGATGAAAACTGAAGCTACTAGGAGGTACTCAGTTGCCAACTTACAGTGTATTTTTTTGCTCTTCAAATCAGGTTGGAGTCAAGACATCCACTGCACAAATGCTGCCCACAAATGTACAACTGCGCACTTGGGAAACATTTAGCGAAGATGTATCCACCATTGACGC</genome_strand>
        <mrna_strand>TCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACGGGGGAACCAACTTTGGAAGAACAGCTGGAGGGCCTTTTATCACTACCAGCTATGACTATGATGCTCCTATTGATGAATATG...............................................................................................GCTTGATTAGGCAGCCAAAGTATGACCATTTGAAGGAGCTTCATAAGGCTGTCAAGTTATGTGAACCAGCACTAATTTCTGCTGATCCTACCGTTACTGTCTTAGGGAACTATGAACAG...........................................................................................................................................................................................................................................................................................................................................................GCACATGTATTTTCTTCCGGCTCTGGACATTGTGCTGCTTTTCTTGCAAATTACCATTTGAGTTCAACTGCAAGGGTGACATTTAGGCACCAACATTACGATCTGCCACCTTGGTCAATAAGCATTCTTCCAGATTGTAAAAATGTTGTATATAATACTGCCAGG.................................................................................................................................................................................................................................................................................................................GTTGGAGTCAAGACATTCACTGCACAAATGCTGCCCACAAATGTACAACTGCGCACTTGGGAAACATTTATCGAAGATGTATACACCATTGACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537767" ref_strand="+" ref_description="SGN-E537767 [TUS-56-I15]">
      <seq>cgagtatgggttagaaataaaacaatatggtgctccaggtcatgcatacatgacttgggcagctaaaatggctgttgaaatgggtactggggtcccgtgggtcatgtgcaaggaggatgatgcccctgatccagtgataaacacctgcaatggtttttattgtgattatttttcccctaacaaacctaacaagccaacaatatggacagaggcatggagtggctggtttgatgattttggcggtccagttcatcatcgaccagttgaagatttggcctttgcagtagctcggttcattcaaaaaggtggctctttggtgaattattatatgtatcacgggggaaccaactttggaagaacagctggagggccttttatcactaccagctatgactatgatgctcctattgatgaatatggcttgattaggcagccaaagtatgaccatttgaaggagcttcataaggctgtcaagttatgtgaaccagcactaatttctgctgatcctaccgttactgtcttagggaactatgaacaggcacatgtattttcttccggctctggacattgtgctgcttttcttgcaaattaccatttgagttcaactgcaagggtgacatttaggcaccaacattacgatctgccaccttggtcaataagcattcttccagattgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="56460" stop="53942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56160" g_stop="56025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56024" i_stop="55795" i_length="230">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55794" g_stop="55706" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="225" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55705" i_stop="55621" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55620" g_stop="55515" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="331" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55514" i_stop="55033" i_length="482">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55032" g_stop="54945" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="419" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54944" i_stop="54850" i_length="95">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54849" g_stop="54731" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="538" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54730" i_stop="54384" i_length="347">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54383" g_stop="54242" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="680" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E537767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56160" e_stop="56025"/>
          <exon e_start="55794" e_stop="55706"/>
          <exon e_start="55620" e_stop="55515"/>
          <exon e_start="55032" e_stop="54945"/>
          <exon e_start="54849" e_stop="54731"/>
          <exon e_start="54383" e_stop="54242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTGGTAAGATGTTTTTTCGCACTATACAAGATTGGATTTGCTTTGTTCATTGAGTAAACTGAGTGCAACACTCAATTCTTATGGCTCCTTCTTTCAACTTGTTTCGATTTGTCCCTCATATTACCAGATTAGGAAATATTTCTTATAGAAAGTCAATTATATAGGAAAGCTGATTGTGAGTGCTTGGGATTACCTAGTGTTATGCTAAACTTAAAGTCTTATTTTGGTGACAGATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTGGTAAATTCATTATACTTGGCATTTGCTGTATGATTAATACTTTTCCATGTTGGGATGATTTACTCAAGTTTCTTCATGTGTAAAGGTTTGATGATTTTGGCGGTCCAGTTCATCATCGACCAGTTGAAGATTTGGCCTTTGCAGTAGCTCGGTTCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATGGTGGGTGGATTTCCTACAGCTTTTGAAATCTCATTACTGCAGCTCCTGTACATGGAATTTAACTAATAACTACTTCTCCGAAGTTCTATATCAATTGATGATATGCCTGTTGTTTAAAAGTGCATGTCTATTATGTTGATGCACGAAATTTGTAATGCAAAATTACCCGTGCTTCGGAAAATAATCTTCTATAGTTATCTGAATTGTCATCTTGACCCATCACCAAGTCTTAACTGTTAAATTCAGTGGCTTTTATGTACTTCTCATTCTTCAGACATTACATATTAAAGTCTTACCAAATGAGTGTATGAAAATGGTATCAAGAGCTCTACTACACTAGTCATTTCTAAAAAAATTAAGGATATAAATAATTTTACTTATAAACAATCAAGAGATTTACTGGCGCTATGGAATCAATCATGCGTGCAACTTGTGATGATACTTTTTACCTTAACTGATGTTTCTTTTTTCTCTTTGAACAGTATCACGGGGGAACCAACTTTGGAAGAACAGCTGGAGGGCCTTTTATCACTACCAGCTATGACTATGATGCTCCTATTGATGAATATGGTCAGAGACTGAGCTAGTACCATTTAGATGCACAACTTCACATGTAGTTCAAATTCTTCGTATATACTAACTAGTTCCCCGTGCTTATTTTATAGGCTTGATTAGGCAGCCAAAGTATGACCATTTGAAGGAGCTTCATAAGGCTGTCAAGTTATGTGAACCAGCACTAATTTCTGCTGATCCTACCGTTACTGTCTTAGGGAACTATGAACAGGTGCCTTTCTTATCTCTTTTCCTCGTTTTGTTGACTCTTTTCATCAGATTTTTGGGGGTAGGGGTGTTACTATGAGTAGACACGGATGCCAGTTGATGCGGAGTACCACAACACCCACCACTACTGCTTTGAGGAAGCGGGTGCAAATTAAAAAGAAATATTGGTTTCTTAAGTATTTCAACCCTGACACAGAGAATGAGTATGCAAATCAATGTTTAAATTTCTAATGAATATAGATGATCAATAATTCTTTGTTCTCTCTGTTTATTACATTGACATATTCTTTTACATATCCGATTCATATATGTTTGACCTTCTAAAACTCTGAAATCTTCTCCATTTTGCAGGCACATGTATTTTCTTCCGGCTCTGGACATTGTGCTGCTTTTCTTGCAAATTACCATTTGAGTTCAACTGCAAGGGTGACATTTAGGCACCAACATTACGATCTGCCACCTTGGTCAATAAGCATTCTTCCAGATTGTAAAA</genome_strand>
        <mrna_strand>CGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTG......................................................................................................................................................................................................................................ATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTG.....................................................................................GTTTGATGATTTTGGCGGTCCAGTTCATCATCGACCAGTTGAAGATTTGGCCTTTGCAGTAGCTCGGTTCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCACGGGGGAACCAACTTTGGAAGAACAGCTGGAGGGCCTTTTATCACTACCAGCTATGACTATGATGCTCCTATTGATGAATATG...............................................................................................GCTTGATTAGGCAGCCAAAGTATGACCATTTGAAGGAGCTTCATAAGGCTGTCAAGTTATGTGAACCAGCACTAATTTCTGCTGATCCTACCGTTACTGTCTTAGGGAACTATGAACAG...........................................................................................................................................................................................................................................................................................................................................................GCACATGTATTTTCTTCCGGCTCTGGACATTGTGCTGCTTTTCTTGCAAATTACCATTTGAGTTCAACTGCAAGGGTGACATTTAGGCACCAACATTACGATCTGCCACCTTGGTCAATAAGCATTCTTCCAGATTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739363" ref_strand="+" ref_description="SGN-E739363 [LC17AF04]">
      <seq>gcgatggcattatacagaaggcaaaagatggaggattggatgttatagaaacctatgtgttttggaatcttcatgaaccttcacctggcaattacaactttgaggggcgtaatgatttagttcgattcataaagctgattcagaaggcagggctttatatgcatcttcgaattgggccttatatttgtggagagtggaattttggtggttttcctgtatggttgaagtatgttcctggaatcagctttagaaccaataatgaacctttcaagagggaaatgcaaagattcaccacgaaaattgtccaaatgatgaagaatgagaagctatttcagacccaaggtggtcctatcattctgtctcagattgagaacgagtatgggttagaaataaaacaatatggtgctccaggtcatgcatacatgacttgggcagctaaaatggctgttgaaatgggtactggggtcccgtgggtcatgtgcaaggaggatgatgcccctgatccagtgataaacacctgcaatggtttttattgtgattatttttcccctaacaaacctaacaagccaacaatatggacagaggcatggagtggctggtttgatgattttggcggtccagttcatcatcgaccagttgaagatttggcctttgcagtagctcggttcattcaaaaaggtggctctttggtgaattattatatgtatcacgggggaaccaactttggaagaacagctggagggccttttatcactaccagctatgactatgatgctcctattgatgaatatggcttgattaggcagccaaagtatgaccatttgaaggagcttcataaggctgtcaagttatgtgaaccagcactaatttctgctgatcctaccgttactgtcttagggaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="57759" stop="54438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57459" g_stop="57368" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57367" i_stop="57211" i_length="157">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57210" g_stop="57098" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="205" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57097" i_stop="56994" i_length="104">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56993" g_stop="56927" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="272" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56926" i_stop="56463" i_length="464">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56462" g_stop="56370" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="365" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56369" i_stop="56169" i_length="201">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56168" g_stop="56025" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="509" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56024" i_stop="55795" i_length="230">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55794" g_stop="55706" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="598" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55705" i_stop="55621" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55620" g_stop="55515" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="704" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55514" i_stop="55033" i_length="482">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55032" g_stop="54945" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="792" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54944" i_stop="54850" i_length="95">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54849" g_stop="54738" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="904" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E739363" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57459" e_stop="57368"/>
          <exon e_start="57210" e_stop="57098"/>
          <exon e_start="56993" e_stop="56927"/>
          <exon e_start="56462" e_stop="56370"/>
          <exon e_start="56168" e_stop="56025"/>
          <exon e_start="55794" e_stop="55706"/>
          <exon e_start="55620" e_stop="55515"/>
          <exon e_start="55032" e_stop="54945"/>
          <exon e_start="54849" e_stop="54738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGGGCATTATACAGAAGGCAAAAGATGGAGGATTGGATGTTATAGAAACCTATGTGTTTTGGAATCTTCATGAACCTTCACCTGGCAATGTACTTTACTCTTTCTTCTTGTTTTAATGGTTCATTGTGAATACTTTTCTGCCAAATCTTGATTTCTTTTTTTGTCATATATAGTTGTAGTTCTTTCTTTTTCTGAGAAGCATTGGTGAAAATGGTGTATTAATGTTTAATTTTTGTGGGTTTATAGTACAACTTTGAGGGGCGTAATGATTTAGTTCGATTCATAAAGCTGATTCAGAAGGCAGGGCTTTATATGCATCTTCGAATTGGGCCTTATATTTGTGGAGAGTGGAATTTTGGGTAAGTTCGATTTTTGTTATTAAATTACTATGTGAGCTTTGATTTATGATTGTCTTTACTTTCTGATGCCAAATGCTCTGAATAATTTTTTTTTCTAATTTCAGTGGTTTTCCTGTATGGTTGAAGTATGTTCCTGGAATCAGCTTTAGAACCAATAATGAACCTTTCAAGGTAATTCTCTCTCTCACACACACAGAGGCACACCCTTCAGAAAAGGATTGCATTTACGGCAACGGTTCAACTAGAAAAGTTTACTTATGTCTTCATAAATGTTGTGTTTTTGCTTCGGTCTATCGGAAACAATCCCTCTAGAAAAGTTTACTTATGTCTTCATAAATGTTGTGTTTTTGCTTCGGTCTATCGGAAACAATCCCTCTACCTCTGACAAGGTAGGGATAAGGTATGCTTATACTCTACTATCCCAAGACCCCACCCACGACTGGGATTACGTGGATATGTTGTTGTTGGTTCAGGTGGAAAAGTAGTATTCTTGGAACATCCTAATGTGTAGTAGAATTTTGGTGTAAGGCTGCACGTACACCCACCCTCCTCAGACCCCACTTGTTATGAAATTGTTGTTGTTGTTGTTTATCTTGGAAGCTAAATCACAGTGGACTGTAATTTCTGTCTTGCAGAGGGAAATGCAAAGATTCACCACGAAAATTGTCCAAATGATGAAGAATGAGAAGCTATTTCAGACCCAAGGTGGTCCTATCATTCTGTCTCAGGTATGATTTTCTACCATTTCACTCATGATAGAAGCCACATATTGAGGCATCTGGTGTGTACTGAAAAGTTAAAGCAATTTAATGACATGTGAGGAAACTCATAGTCTGGATCATCAGTTTTCTTTCCTCATCCCATGTGCAATATGATGCTTTGCAATAATGAAGCATCATAGATACTTATGTTTAGAAGTGTTGATGCAGATTGAGAACGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTGGTAAGATGTTTTTTCGCACTATACAAGATTGGATTTGCTTTGTTCATTGAGTAAACTGAGTGCAACACTCAATTCTTATGGCTCCTTCTTTCAACTTGTTTCGATTTGTCCCTCATATTACCAGATTAGGAAATATTTCTTATAGAAAGTCAATTATATAGGAAAGCTGATTGTGAGTGCTTGGGATTACCTAGTGTTATGCTAAACTTAAAGTCTTATTTTGGTGACAGATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTGGTAAATTCATTATACTTGGCATTTGCTGTATGATTAATACTTTTCCATGTTGGGATGATTTACTCAAGTTTCTTCATGTGTAAAGGTTTGATGATTTTGGCGGTCCAGTTCATCATCGACCAGTTGAAGATTTGGCCTTTGCAGTAGCTCGGTTCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATGGTGGGTGGATTTCCTACAGCTTTTGAAATCTCATTACTGCAGCTCCTGTACATGGAATTTAACTAATAACTACTTCTCCGAAGTTCTATATCAATTGATGATATGCCTGTTGTTTAAAAGTGCATGTCTATTATGTTGATGCACGAAATTTGTAATGCAAAATTACCCGTGCTTCGGAAAATAATCTTCTATAGTTATCTGAATTGTCATCTTGACCCATCACCAAGTCTTAACTGTTAAATTCAGTGGCTTTTATGTACTTCTCATTCTTCAGACATTACATATTAAAGTCTTACCAAATGAGTGTATGAAAATGGTATCAAGAGCTCTACTACACTAGTCATTTCTAAAAAAATTAAGGATATAAATAATTTTACTTATAAACAATCAAGAGATTTACTGGCGCTATGGAATCAATCATGCGTGCAACTTGTGATGATACTTTTTACCTTAACTGATGTTTCTTTTTTCTCTTTGAACAGTATCACGGGGGAACCAACTTTGGAAGAACAGCTGGAGGGCCTTTTATCACTACCAGCTATGACTATGATGCTCCTATTGATGAATATGGTCAGAGACTGAGCTAGTACCATTTAGATGCACAACTTCACATGTAGTTCAAATTCTTCGTATATACTAACTAGTTCCCCGTGCTTATTTTATAGGCTTGATTAGGCAGCCAAAGTATGACCATTTGAAGGAGCTTCATAAGGCTGTCAAGTTATGTGAACCAGCACTAATTTCTGCTGATCCTACCGTTACTGTCTTAGGGAACTA</genome_strand>
        <mrna_strand>GCGATGGCATTATACAGAAGGCAAAAGATGGAGGATTGGATGTTATAGAAACCTATGTGTTTTGGAATCTTCATGAACCTTCACCTGGCAAT.............................................................................................................................................................TACAACTTTGAGGGGCGTAATGATTTAGTTCGATTCATAAAGCTGATTCAGAAGGCAGGGCTTTATATGCATCTTCGAATTGGGCCTTATATTTGTGGAGAGTGGAATTTTGG........................................................................................................TGGTTTTCCTGTATGGTTGAAGTATGTTCCTGGAATCAGCTTTAGAACCAATAATGAACCTTTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAAATGCAAAGATTCACCACGAAAATTGTCCAAATGATGAAGAATGAGAAGCTATTTCAGACCCAAGGTGGTCCTATCATTCTGTCTCAG.........................................................................................................................................................................................................ATTGAGAACGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTG......................................................................................................................................................................................................................................ATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTG.....................................................................................GTTTGATGATTTTGGCGGTCCAGTTCATCATCGACCAGTTGAAGATTTGGCCTTTGCAGTAGCTCGGTTCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCACGGGGGAACCAACTTTGGAAGAACAGCTGGAGGGCCTTTTATCACTACCAGCTATGACTATGATGCTCCTATTGATGAATATG...............................................................................................GCTTGATTAGGCAGCCAAAGTATGACCATTTGAAGGAGCTTCATAAGGCTGTCAAGTTATGTGAACCAGCACTAATTTCTGCTGATCCTACCGTTACTGTCTTAGGGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700705" ref_strand="+" ref_description="SGN-E700705 [FA13DG01]">
      <seq>acgatatctctcattatcaatggacaaagaaaaattctgttttctggctctgttcattatccaagaagcacccctgatatgtgggagggcattatacagaaggcaaaagatggaggattggatgttatagaaacctatgtgttttggaatcttcatgaaccttcacctggcaattacaactttgaggggcgtaatgatttagttcgattcataaagctgattcagaaggcagggctttatatgcatcttcgaattgggccttatatttgtggagagtggaattttggtggttttcctgtatggttgaagtatgttcctggaatcagctttagaaccaataatgaacctttcaagagggaaatgcaaagattcaccacgaaaattgtccaaatgatgaagaatgagaagctatttcagacccaaggtggtcctatcattctgtctcagattgagaacgagtatgggttagaaataaaacaatatggtgctccaggtcatgcatacatgacttgggcagctaaaatggctgttgaaatgggtactggggtcccgtgggtcatgtgcaaggaggatgatgcccctgatccagtgataaacacctgcaatggtttttattgtgattatttttcccctaacaaacctaacaagccaacaatatggacagaggcatggagtggctggtttgatgattttggcggtccagttcatcatcgaccagttgaagatttggcctttgcagtagctcggttcattcaaaaaggtggctctttggtgaattattatatggtgggtggatttcctacagcttttgaaatctcattactgcagctcctgtacatgggaatttaactaataactacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="57914" stop="55139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57614" g_stop="57537" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57536" i_stop="57464" i_length="73">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57463" g_stop="57368" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="174" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57367" i_stop="57211" i_length="157">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57210" g_stop="57098" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="287" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57097" i_stop="56994" i_length="104">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56993" g_stop="56927" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="354" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56926" i_stop="56463" i_length="464">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56462" g_stop="56370" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="447" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56369" i_stop="56169" i_length="201">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56168" g_stop="56025" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="591" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56024" i_stop="55795" i_length="230">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55794" g_stop="55706" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="680" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55705" i_stop="55621" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55620" g_stop="55439" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="863" r_length="183" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E700705" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57614" e_stop="57537"/>
          <exon e_start="57463" e_stop="57368"/>
          <exon e_start="57210" e_stop="57098"/>
          <exon e_start="56993" e_stop="56927"/>
          <exon e_start="56462" e_stop="56370"/>
          <exon e_start="56168" e_stop="56025"/>
          <exon e_start="55794" e_stop="55706"/>
          <exon e_start="55620" e_stop="55439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATCTCTCATTATCAATGGACAAAGAAAAATTCTGTTTTCTGGCTCTGTTCATTATCCAAGAAGCACCCCTGATGTATGGCTTTTTTTTTTTTGCTCTTTTTCAATTTTTTTTTGTGGTTCTTGGTTTAACAATGGACAAAATGCAGATGTGGGAGGGCATTATACAGAAGGCAAAAGATGGAGGATTGGATGTTATAGAAACCTATGTGTTTTGGAATCTTCATGAACCTTCACCTGGCAATGTACTTTACTCTTTCTTCTTGTTTTAATGGTTCATTGTGAATACTTTTCTGCCAAATCTTGATTTCTTTTTTTGTCATATATAGTTGTAGTTCTTTCTTTTTCTGAGAAGCATTGGTGAAAATGGTGTATTAATGTTTAATTTTTGTGGGTTTATAGTACAACTTTGAGGGGCGTAATGATTTAGTTCGATTCATAAAGCTGATTCAGAAGGCAGGGCTTTATATGCATCTTCGAATTGGGCCTTATATTTGTGGAGAGTGGAATTTTGGGTAAGTTCGATTTTTGTTATTAAATTACTATGTGAGCTTTGATTTATGATTGTCTTTACTTTCTGATGCCAAATGCTCTGAATAATTTTTTTTTCTAATTTCAGTGGTTTTCCTGTATGGTTGAAGTATGTTCCTGGAATCAGCTTTAGAACCAATAATGAACCTTTCAAGGTAATTCTCTCTCTCACACACACAGAGGCACACCCTTCAGAAAAGGATTGCATTTACGGCAACGGTTCAACTAGAAAAGTTTACTTATGTCTTCATAAATGTTGTGTTTTTGCTTCGGTCTATCGGAAACAATCCCTCTAGAAAAGTTTACTTATGTCTTCATAAATGTTGTGTTTTTGCTTCGGTCTATCGGAAACAATCCCTCTACCTCTGACAAGGTAGGGATAAGGTATGCTTATACTCTACTATCCCAAGACCCCACCCACGACTGGGATTACGTGGATATGTTGTTGTTGGTTCAGGTGGAAAAGTAGTATTCTTGGAACATCCTAATGTGTAGTAGAATTTTGGTGTAAGGCTGCACGTACACCCACCCTCCTCAGACCCCACTTGTTATGAAATTGTTGTTGTTGTTGTTTATCTTGGAAGCTAAATCACAGTGGACTGTAATTTCTGTCTTGCAGAGGGAAATGCAAAGATTCACCACGAAAATTGTCCAAATGATGAAGAATGAGAAGCTATTTCAGACCCAAGGTGGTCCTATCATTCTGTCTCAGGTATGATTTTCTACCATTTCACTCATGATAGAAGCCACATATTGAGGCATCTGGTGTGTACTGAAAAGTTAAAGCAATTTAATGACATGTGAGGAAACTCATAGTCTGGATCATCAGTTTTCTTTCCTCATCCCATGTGCAATATGATGCTTTGCAATAATGAAGCATCATAGATACTTATGTTTAGAAGTGTTGATGCAGATTGAGAACGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTGGTAAGATGTTTTTTCGCACTATACAAGATTGGATTTGCTTTGTTCATTGAGTAAACTGAGTGCAACACTCAATTCTTATGGCTCCTTCTTTCAACTTGTTTCGATTTGTCCCTCATATTACCAGATTAGGAAATATTTCTTATAGAAAGTCAATTATATAGGAAAGCTGATTGTGAGTGCTTGGGATTACCTAGTGTTATGCTAAACTTAAAGTCTTATTTTGGTGACAGATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTGGTAAATTCATTATACTTGGCATTTGCTGTATGATTAATACTTTTCCATGTTGGGATGATTTACTCAAGTTTCTTCATGTGTAAAGGTTTGATGATTTTGGCGGTCCAGTTCATCATCGACCAGTTGAAGATTTGGCCTTTGCAGTAGCTCGGTTCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATGGTGGGTGGATTTCCTACAGCTTTTGAAATCTCATTACTGCAGCTCCTGTACAT-GGAATTTAACTAATAACTACTTC</genome_strand>
        <mrna_strand>ACGATATCTCTCATTATCAATGGACAAAGAAAAATTCTGTTTTCTGGCTCTGTTCATTATCCAAGAAGCACCCCTGAT.........................................................................ATGTGGGAGGGCATTATACAGAAGGCAAAAGATGGAGGATTGGATGTTATAGAAACCTATGTGTTTTGGAATCTTCATGAACCTTCACCTGGCAAT.............................................................................................................................................................TACAACTTTGAGGGGCGTAATGATTTAGTTCGATTCATAAAGCTGATTCAGAAGGCAGGGCTTTATATGCATCTTCGAATTGGGCCTTATATTTGTGGAGAGTGGAATTTTGG........................................................................................................TGGTTTTCCTGTATGGTTGAAGTATGTTCCTGGAATCAGCTTTAGAACCAATAATGAACCTTTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAAATGCAAAGATTCACCACGAAAATTGTCCAAATGATGAAGAATGAGAAGCTATTTCAGACCCAAGGTGGTCCTATCATTCTGTCTCAG.........................................................................................................................................................................................................ATTGAGAACGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTG......................................................................................................................................................................................................................................ATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTG.....................................................................................GTTTGATGATTTTGGCGGTCCAGTTCATCATCGACCAGTTGAAGATTTGGCCTTTGCAGTAGCTCGGTTCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATGGTGGGTGGATTTCCTACAGCTTTTGAAATCTCATTACTGCAGCTCCTGTACATGGGAATTTAACTAATAACTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266748" ref_strand="+" ref_description="SGN-E266748 [cLEI-7-M11]">
      <seq>gcgagtatgggttagaaataaaacaatatggtgctccaggtcatgcatacatgacttgggcagctaaaatggctgttgaaatgggtactggggtcccgtgggtcatgtgcaaagaagatgatgcccctgatccagtgataaacacctgcaatggtttttattgtgattatttttcccctaacaaacctaacaagccaacaatatggacagaggcatggagtggctggtttgatgattttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="56460" stop="55404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56161" g_stop="56025" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56024" i_stop="55795" i_length="230">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55794" g_stop="55706" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="226" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55705" i_stop="55621" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55620" g_stop="55605" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="242" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E266748" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56161" e_stop="56025"/>
          <exon e_start="55794" e_stop="55706"/>
          <exon e_start="55620" e_stop="55605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTGGTAAGATGTTTTTTCGCACTATACAAGATTGGATTTGCTTTGTTCATTGAGTAAACTGAGTGCAACACTCAATTCTTATGGCTCCTTCTTTCAACTTGTTTCGATTTGTCCCTCATATTACCAGATTAGGAAATATTTCTTATAGAAAGTCAATTATATAGGAAAGCTGATTGTGAGTGCTTGGGATTACCTAGTGTTATGCTAAACTTAAAGTCTTATTTTGGTGACAGATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTGGTAAATTCATTATACTTGGCATTTGCTGTATGATTAATACTTTTCCATGTTGGGATGATTTACTCAAGTTTCTTCATGTGTAAAGGTTTGATGATTTTGGC</genome_strand>
        <mrna_strand>GCGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAAGAAGATGATGCCCCTGATCCAGTG......................................................................................................................................................................................................................................ATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTG.....................................................................................GTTTGATGATTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277714" ref_strand="-" ref_description="SGN-E277714 [cLEL-5-O23](-)">
      <seq>gcacgaggggaaatgcaaagattcaccacgaaaattgtccaaatgatgaagaatgagaagctatttcagacccaaggtggtcctatcattctgtctcagattgagaacgagtatgggttagaaataaaacaatatggtgctccaggtcatgcatacatgacttgggcagctaaaatggctgttgaaatgggtactggggtcccgtgggtcatgtgcaaggaggatgatgcccctgatccagtgataaacacctgcaatggtttttattgtgattatttttcccctaacaaacctaacaagccaacaatatggacagaggcatggagtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="56766" stop="55408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56466" g_stop="56370" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56369" i_stop="56169" i_length="201">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56168" g_stop="56025" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="243" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56024" i_stop="55795" i_length="230">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55794" g_stop="55708" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="330" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E277714" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277714" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56466" e_stop="56370"/>
          <exon e_start="56168" e_stop="56025"/>
          <exon e_start="55794" e_stop="55708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCA-GAGGG-AAATGCAAAGATTCACCACGAAAATTGTCCAAATGATGAAGAATGAGAAGCTATTTCAGACCCAAGGTGGTCCTATCATTCTGTCTCAGGTATGATTTTCTACCATTTCACTCATGATAGAAGCCACATATTGAGGCATCTGGTGTGTACTGAAAAGTTAAAGCAATTTAATGACATGTGAGGAAACTCATAGTCTGGATCATCAGTTTTCTTTCCTCATCCCATGTGCAATATGATGCTTTGCAATAATGAAGCATCATAGATACTTATGTTTAGAAGTGTTGATGCAGATTGAGAACGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTGGTAAGATGTTTTTTCGCACTATACAAGATTGGATTTGCTTTGTTCATTGAGTAAACTGAGTGCAACACTCAATTCTTATGGCTCCTTCTTTCAACTTGTTTCGATTTGTCCCTCATATTACCAGATTAGGAAATATTTCTTATAGAAAGTCAATTATATAGGAAAGCTGATTGTGAGTGCTTGGGATTACCTAGTGTTATGCTAAACTTAAAGTCTTATTTTGGTGACAGATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGC</genome_strand>
        <mrna_strand>GCACGAGGGGAAATGCAAAGATTCACCACGAAAATTGTCCAAATGATGAAGAATGAGAAGCTATTTCAGACCCAAGGTGGTCCTATCATTCTGTCTCAG.........................................................................................................................................................................................................ATTGAGAACGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTG......................................................................................................................................................................................................................................ATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248779" ref_strand="+" ref_description="SGN-E248779 [cLEG-5-E5]">
      <seq>gggatacccgcgataaacagtcaagaaaacggaaggccccaggagaagatgaagcaacaaacaagcgtgtcagaggtgtcactttaagggaaggcaatgtgtcgtcagtttcaggtagtaaagatggagatcaaccaaaaaataaaggtgttaaaggagccgccttctctgcagaaaaaagagatgagaagaagaacaagaaggaaggtaaaaagctaggaggcacaaaacagaagctaaacgataatcaagaaggaaaaaggcatggtggctttggtagtgaaaaaacaggtaatgctactcccaaggttggacaaagcgaatacgttgcagcaagagcaacaaagaggaaatttgaagataaaactaaccaacaaaaacaaagcgtcagtttacagaaccggaaaaaggataaaaagaagaaagatgcagttggacgagatggagtagacaagctagatatgctaattgaacaatatacatccaaattcactcgcggcagttctaatcaaactaatagtaatcagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="65855" stop="64725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65555" g_stop="65025" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E248779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65555" e_stop="65025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATACCCGCGATAAACAGTCAAGAAAACGGAAGGCCCCAGGAGAAGATGAAGCAACAAACAAGCGTGTCAGAGGTGTCACTTTAAGGGAAGGCAATGTGTCGTCAGTTTCAGGTAGTAAAGATGGAGATCAACCAAAAAATAAAGGTGTTAAAGGAGCCGCCTTCTCTGCAGAAAAAAGAGATGAGAAGAAGAACAAGAAGGAAGGTAAAAAGCTAGGAGGCACAAAACAGAAGCTAAACGATAATCAAGAAGGAAAAAGGCATGGTGGCTTTGGTAGTGAAAAAACAGGTAATGCTACTCCCAAGGTTGGACAAAGCGAATACGTTGCAGCAAGAGCAACAAAGAGGAAATTTGAAGATAAAACTAACCAACAAAAACAAAGCGTCAGTTTACAGAACCGGAAAAAGGATAAAAAGAAGAAAGATGCAGTTGGACGAGATGGAGTAGACAAGCTAGATATGCTAATTGAACAATATACATCCAAATTCACTCGCGGCAGTTCTAATCAAACTAATAGTAATCAGCAGC</genome_strand>
        <mrna_strand>GGGATACCCGCGATAAACAGTCAAGAAAACGGAAGGCCCCAGGAGAAGATGAAGCAACAAACAAGCGTGTCAGAGGTGTCACTTTAAGGGAAGGCAATGTGTCGTCAGTTTCAGGTAGTAAAGATGGAGATCAACCAAAAAATAAAGGTGTTAAAGGAGCCGCCTTCTCTGCAGAAAAAAGAGATGAGAAGAAGAACAAGAAGGAAGGTAAAAAGCTAGGAGGCACAAAACAGAAGCTAAACGATAATCAAGAAGGAAAAAGGCATGGTGGCTTTGGTAGTGAAAAAACAGGTAATGCTACTCCCAAGGTTGGACAAAGCGAATACGTTGCAGCAAGAGCAACAAAGAGGAAATTTGAAGATAAAACTAACCAACAAAAACAAAGCGTCAGTTTACAGAACCGGAAAAAGGATAAAAAGAAGAAAGATGCAGTTGGACGAGATGGAGTAGACAAGCTAGATATGCTAATTGAACAATATACATCCAAATTCACTCGCGGCAGTTCTAATCAAACTAATAGTAATCAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211395" ref_strand="+" ref_description="SGN-E211395 [cLEC-67-M17]">
      <seq>acaatgttcccaagtcaatgactgaaaaacagctgaagacactttgcattgatgcagttacttctcgtgctactaagcaaaagcctgttatccggcagataaagtttttgaaggacgtgaaaaaaggacaagcagtggcaaagaatcattctcgtggagtagcttttcttgagttttcagagcatgaacatgcacttgtggctttgagagttcttaacaacaatcctgagacttttggtcctgagcatcgaccaatagtggagtttgctcttgacaatatccaaacaatgaagcttcgtcagaaatttcagcagcaaggttttaacaggaacaaagaagatttgcagaagaatgacaatacgaatgaacgggatacccgcgataaacagtcaagaaaacggaaggccccaggagaagatgaagcaacaaacaagcgtgtcagaggtgtcactttaagggaaggcaatgtgtcgtcagtttcaggtagtaaagatggagatcaaccaaaaaataaaggtgttaaaggagccgccttctctgcngaaaaaagagatgagaagaagaacaagaaggaaggtaaaaagctaggaggcacaaaacagaagctaaacgataatcaagaaggaaaaaggcatggtggctttggtagtgaaaaaacaggtaatgctactcccaaggntggacaaagcgaatacgttgcagcaagagcaacaaagaggaaattttgagataaaactaacaacaaaaacaaagcgtcagttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="66383" stop="64861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66083" g_stop="65986" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65985" i_stop="65906" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65776" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="228" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65775" i_stop="65697" i_length="79">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65696" g_stop="65161" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="763" r_length="535" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E211395" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66083" e_stop="65986"/>
          <exon e_start="65905" e_stop="65776"/>
          <exon e_start="65696" e_stop="65161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGTTCCCAAGTCAATGACTGAAAAACAGCTGAAGACACTTTGCATTGATGCAGTTACTTCTCGTGCTACTAAGCAAAAGCCTGTTATCCGGCAGGTGAGCTTTCCTTTGAAGTTTAGTCTTTGCAGTTTGGCTATATTATTCTTGCAACTTCATTATACTTTTCTGTGTTGCAGATAAAGTTTTTGAAGGACGTGAAAAAAGGACAAGCAGTGGCAAAGAATCATTCTCGTGGAGTAGCTTTTCTTGAGTTTTCAGAGCATGAACATGCACTTGTGGCTTTGAGAGTTCTTAACAACAATCCTGGCAAGTGTCTTTAGTTTTTTGATATCTGGTGACTTTTAGCATTTTACATTTCTGTATCTGAGTACTTATCTATTTTCAGAGACTTTTGGTCCTGAGCATCGACCAATAGTGGAGTTTGCTCTTGACAATATCCAAACAATGAAGCTTCGTCAGAAATTTCAGCAGCAAGGTTTTAACAGGAACAAAGAAGATTTGCAGAAGAATGACAATACGAATGAACGGGATACCCGCGATAAACAGTCAAGAAAACGGAAGGCCCCAGGAGAAGATGAAGCAACAAACAAGCGTGTCAGAGGTGTCACTTTAAGGGAAGGCAATGTGTCGTCAGTTTCAGGTAGTAAAGATGGAGATCAACCAAAAAATAAAGGTGTTAAAGGAGCCGCCTTCTCTGCAGAAAAAAGAGATGAGAAGAAGAACAAGAAGGAAGGTAAAAAGCTAGGAGGCACAAAACAGAAGCTAAACGATAATCAAGAAGGAAAAAGGCATGGTGGCTTTGGTAGTGAAAAAACAGGTAATGCTACTCCCAAGGTTGGACAAAGCGAATACGTTGCAGCAAGAGCAACAAAGAGGAAATTTGAAGATAAAACTAACCAACAAAAACAAAGCGTCAGTTTA</genome_strand>
        <mrna_strand>ACAATGTTCCCAAGTCAATGACTGAAAAACAGCTGAAGACACTTTGCATTGATGCAGTTACTTCTCGTGCTACTAAGCAAAAGCCTGTTATCCGGCAG................................................................................ATAAAGTTTTTGAAGGACGTGAAAAAAGGACAAGCAGTGGCAAAGAATCATTCTCGTGGAGTAGCTTTTCTTGAGTTTTCAGAGCATGAACATGCACTTGTGGCTTTGAGAGTTCTTAACAACAATCCTG...............................................................................AGACTTTTGGTCCTGAGCATCGACCAATAGTGGAGTTTGCTCTTGACAATATCCAAACAATGAAGCTTCGTCAGAAATTTCAGCAGCAAGGTTTTAACAGGAACAAAGAAGATTTGCAGAAGAATGACAATACGAATGAACGGGATACCCGCGATAAACAGTCAAGAAAACGGAAGGCCCCAGGAGAAGATGAAGCAACAAACAAGCGTGTCAGAGGTGTCACTTTAAGGGAAGGCAATGTGTCGTCAGTTTCAGGTAGTAAAGATGGAGATCAACCAAAAAATAAAGGTGTTAAAGGAGCCGCCTTCTCTGCNGAAAAAAGAGATGAGAAGAAGAACAAGAAGGAAGGTAAAAAGCTAGGAGGCACAAAACAGAAGCTAAACGATAATCAAGAAGGAAAAAGGCATGGTGGCTTTGGTAGTGAAAAAACAGGTAATGCTACTCCCAAGGNTGGACAAAGCGAATACGTTGCAGCAAGAGCAACAAAGAGGAAATTTTGAGATAAAACTAA-CAACAAAAACAAAGCGTCAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237862" ref_strand="+" ref_description="SGN-E237862 [cLED-18-D2]">
      <seq>ttcccaagtcaatgactgaaaaacagctgaagacactgtgcattgatgcagttacttgtcgtgctactaagcaaaagcctgttatccggcagataaagtttttgaaggacgtgaaaaaaggacaagcagtggcaaagaatcattctcgtggagtagcttttcttgagttttcagagcatgaacatgcacttgtggctttgagagttcttaacaacaatcctgagacttttggtcctgagcatcgaccaatagtggagtttgctcttgacaatatccaaacaatgaagcttcgtcagaaatttcagcagcaaggttttaacaggaacaaagaagatttgcagaagaatgacaatacgaatgaacgggatacccgcgataaacagtcaagaaaacggaaggccccaggagaagatgaagcaacaaacaagcgtgtcagaggtgtcactttaagggaaggcaatgtgtcgtcagtttcaggtagtaaagatggagatcaaccaaaatataaaggtgttaaaggagccgtcttctctgcagaaaaaagagatgagaagaagaacaagaaggaaagtaaaaagctaggaggcacaaaacagaagctaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="66377" stop="65013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66077" g_stop="65986" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65985" i_stop="65906" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65776" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="222" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65775" i_stop="65697" i_length="79">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65696" g_stop="65313" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="606" r_length="384" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E237862" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66077" e_stop="65986"/>
          <exon e_start="65905" e_stop="65776"/>
          <exon e_start="65696" e_stop="65313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCAAGTCAATGACTGAAAAACAGCTGAAGACACTTTGCATTGATGCAGTTACTTCTCGTGCTACTAAGCAAAAGCCTGTTATCCGGCAGGTGAGCTTTCCTTTGAAGTTTAGTCTTTGCAGTTTGGCTATATTATTCTTGCAACTTCATTATACTTTTCTGTGTTGCAGATAAAGTTTTTGAAGGACGTGAAAAAAGGACAAGCAGTGGCAAAGAATCATTCTCGTGGAGTAGCTTTTCTTGAGTTTTCAGAGCATGAACATGCACTTGTGGCTTTGAGAGTTCTTAACAACAATCCTGGCAAGTGTCTTTAGTTTTTTGATATCTGGTGACTTTTAGCATTTTACATTTCTGTATCTGAGTACTTATCTATTTTCAGAGACTTTTGGTCCTGAGCATCGACCAATAGTGGAGTTTGCTCTTGACAATATCCAAACAATGAAGCTTCGTCAGAAATTTCAGCAGCAAGGTTTTAACAGGAACAAAGAAGATTTGCAGAAGAATGACAATACGAATGAACGGGATACCCGCGATAAACAGTCAAGAAAACGGAAGGCCCCAGGAGAAGATGAAGCAACAAACAAGCGTGTCAGAGGTGTCACTTTAAGGGAAGGCAATGTGTCGTCAGTTTCAGGTAGTAAAGATGGAGATCAACCAAAAAATAAAGGTGTTAAAGGAGCCGCCTTCTCTGCAGAAAAAAGAGATGAGAAGAAGAACAAGAAGGAAGGTAAAAAGCTAGGAGGCACAAAACAGAAGCTAAACG</genome_strand>
        <mrna_strand>TTCCCAAGTCAATGACTGAAAAACAGCTGAAGACACTGTGCATTGATGCAGTTACTTGTCGTGCTACTAAGCAAAAGCCTGTTATCCGGCAG................................................................................ATAAAGTTTTTGAAGGACGTGAAAAAAGGACAAGCAGTGGCAAAGAATCATTCTCGTGGAGTAGCTTTTCTTGAGTTTTCAGAGCATGAACATGCACTTGTGGCTTTGAGAGTTCTTAACAACAATCCTG...............................................................................AGACTTTTGGTCCTGAGCATCGACCAATAGTGGAGTTTGCTCTTGACAATATCCAAACAATGAAGCTTCGTCAGAAATTTCAGCAGCAAGGTTTTAACAGGAACAAAGAAGATTTGCAGAAGAATGACAATACGAATGAACGGGATACCCGCGATAAACAGTCAAGAAAACGGAAGGCCCCAGGAGAAGATGAAGCAACAAACAAGCGTGTCAGAGGTGTCACTTTAAGGGAAGGCAATGTGTCGTCAGTTTCAGGTAGTAAAGATGGAGATCAACCAAAATATAAAGGTGTTAAAGGAGCCGTCTTCTCTGCAGAAAAAAGAGATGAGAAGAAGAACAAGAAGGAAAGTAAAAAGCTAGGAGGCACAAAACAGAAGCTAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245444" ref_strand="+" ref_description="SGN-E245444 [cLEF-43-C3]">
      <seq>aggaattcggcacgaggtggctttgagagttcttaacaacaatcctgagacttttggtcctgagcatcgaccaatagtggagtttgctcttgacaatatccaaacaatgaagcttcgtcagaaatttcagcagcaaggttttaacaggaacaaagaagatttgcagaagaatgacaatacgaatgaacgggatacccgcgataaacagtcaagaaaacggaaggccccaggagaagatgaagcaacaaacaagcgtgtcagaggtgtcactttaagggaaggcaatgtgtcgtcagtttcaggtagtaaagatggagatcaaccaaaaaataaaggtgttaaaggagccgccttctctgcagaaaaaagagatgagaagaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="66106" stop="65059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65820" g_stop="65776" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.778"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65775" i_stop="65697" i_length="79">
            <donor d_prob="0.984" d_score="0.78"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65696" g_stop="65359" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="385" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E245444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65820" e_stop="65776"/>
          <exon e_start="65696" e_stop="65359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAA-CATGCACTTG-TGGCTTTGAGAGTTCTTAACAACAATCCTGGCAAGTGTCTTTAGTTTTTTGATATCTGGTGACTTTTAGCATTTTACATTTCTGTATCTGAGTACTTATCTATTTTCAGAGACTTTTGGTCCTGAGCATCGACCAATAGTGGAGTTTGCTCTTGACAATATCCAAACAATGAAGCTTCGTCAGAAATTTCAGCAGCAAGGTTTTAACAGGAACAAAGAAGATTTGCAGAAGAATGACAATACGAATGAACGGGATACCCGCGATAAACAGTCAAGAAAACGGAAGGCCCCAGGAGAAGATGAAGCAACAAACAAGCGTGTCAGAGGTGTCACTTTAAGGGAAGGCAATGTGTCGTCAGTTTCAGGTAGTAAAGATGGAGATCAACCAAAAAATAAAGGTGTTAAAGGAGCCGCCTTCTCTGCAGAAAAAAGAGATGAGAAGAAGAAC</genome_strand>
        <mrna_strand>AGGAATTCGGCACGAGGTGGCTTTGAGAGTTCTTAACAACAATCCTG...............................................................................AGACTTTTGGTCCTGAGCATCGACCAATAGTGGAGTTTGCTCTTGACAATATCCAAACAATGAAGCTTCGTCAGAAATTTCAGCAGCAAGGTTTTAACAGGAACAAAGAAGATTTGCAGAAGAATGACAATACGAATGAACGGGATACCCGCGATAAACAGTCAAGAAAACGGAAGGCCCCAGGAGAAGATGAAGCAACAAACAAGCGTGTCAGAGGTGTCACTTTAAGGGAAGGCAATGTGTCGTCAGTTTCAGGTAGTAAAGATGGAGATCAACCAAAAAATAAAGGTGTTAAAGGAGCCGCCTTCTCTGCAGAAAAAAGAGATGAGAAGAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726022" ref_strand="+" ref_description="SGN-E726022 [LA10AC08]">
      <seq>caggagggtcttattttggagggcaccccagctgctgaaggtgtttcagtgggtgatatgtcaaagcgcaaggggctgcaagaaaagaagattatcaagctgaagtccccaaatttccatgtgtcaaggacacggctgattatgtacaatgttcccaagtcaatgactgaaaaacagctgaagacactttgcattgatgcagttacttctcgtgctactaagcaaaagcctgttatccggcagataaagtttttgaaggacgtgaaaaaaggacaagcagtggcaaagaatcattctcgtggagtagcttttcttgagttttcagagcatgaacatgcacttgtggctttgagagttcttaacaacaatcctgagacttttggtcctgagcatcgaccaatagtggagtttgctcttgacaatatccaaacaatgaagcttcgtcagaaatttcagcagcaaggttttaacaggaaccaagaagatttgcagaagaaatgacatacgaatgaacgggatacccgcgataaacagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="67469" stop="65233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67169" g_stop="67096" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67095" i_stop="66155" i_length="941">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66154" g_stop="65986" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="243" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65985" i_stop="65906" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65905" g_stop="65776" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="373" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65775" i_stop="65697" i_length="79">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65696" g_stop="65533" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="537" r_length="164" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E726022" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67169" e_stop="67096"/>
          <exon e_start="66154" e_stop="65986"/>
          <exon e_start="65905" e_stop="65776"/>
          <exon e_start="65696" e_stop="65533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGGTCTTATTTTGGAGGGCACCCCAGCTGCTGAAGGTGTTTCAGTGGGTGATATGTCAAAGCGCAAGGGGTCAGTCTCACAAAACTCAAAATTTATCTTATATTCAAACTGGTGAATCTTGAAAGGAAAACATTCCTAACAATTGACTTCATATCAGCTGAGTTCATCTATAGTTTTTTGGCGACAGAAACTGCCCTCCTTTTTTTCTCTACTATAACTCTCTTTTGACAAAAGCTTCTTTAAGGTGTTATGGGACATTAATTCGTAGACCAAGAGTGATCCTTTTAAAGAAGTCTATATGTCCAGAGCACAAAAGCAATATATGATAGGGGTAGATAGATGAACTTGTGGTAATAGTAATGATAATATGTTAAAGAATTGGAGCTCCTCATTAAGACAAGACAATGAAGGTTGATTTTGCTTAGTTTGAAGATTTTCAGTTTTGCCCCCTCAGGCCACATTTCCTATTGGTAGTTACTTCTTTTCAATAATTCTAGCAGGGTTTCTGCATTCAACGGTTAACAAGTGATCTCCTCTTTATTTAATTTTGATCTGCCGGTGCAATTAGCATCGAACTATCTATTCCTTTCTTTTCACTTTATGCTGTACAAATGAATTGATTAGCTAATAAATTAGGTGAATATATAATTATTTACTTTACCTTCTTACTTCTTTTGATGGCCTTTGCAATATTTTTTGTTACTCAAATGTGTTTTTTTGCTATTTAATATATCAAATGAGTTTTTTTTAGGTAATCAATGCTTCAGCAAATAAAAGAACTCATTTGATGCAGAATGCTTTTATTGGCATGACATATGAGTTCAAATGAAGTAACATGGTGAATGAGGATTCATATCGTTAACCACTACTTGTTTGTGACTGAGGTGTAGTGGTAGCTGTTGTATTAGATGCAGAATGTTTAAGGAAGTTCTGGAGCTGTTCTATTGCAGTTTTAAAATGTTTTGTAAGTTCCTGTATAGCTTGCAATGCTAACGTTGTTCATTGTGTAGGCTGCAAGAAAAGAAGATTATCAAGCTGAAGTCCCCAAATTTCCATGTGTCAAGGACACGGCTGATTATGTACAATGTTCCCAAGTCAATGACTGAAAAACAGCTGAAGACACTTTGCATTGATGCAGTTACTTCTCGTGCTACTAAGCAAAAGCCTGTTATCCGGCAGGTGAGCTTTCCTTTGAAGTTTAGTCTTTGCAGTTTGGCTATATTATTCTTGCAACTTCATTATACTTTTCTGTGTTGCAGATAAAGTTTTTGAAGGACGTGAAAAAAGGACAAGCAGTGGCAAAGAATCATTCTCGTGGAGTAGCTTTTCTTGAGTTTTCAGAGCATGAACATGCACTTGTGGCTTTGAGAGTTCTTAACAACAATCCTGGCAAGTGTCTTTAGTTTTTTGATATCTGGTGACTTTTAGCATTTTACATTTCTGTATCTGAGTACTTATCTATTTTCAGAGACTTTTGGTCCTGAGCATCGACCAATAGTGGAGTTTGCTCTTGACAATATCCAAACAATGAAGCTTCGTCAGAAATTTCAGCAGCAAGGTTTTAACAGGAACAAAGAAGATTTGCAGAAG-AATGACAATACGAATGAACGGGATACCCGCGATAAACAGTCA</genome_strand>
        <mrna_strand>CAGGAGGGTCTTATTTTGGAGGGCACCCCAGCTGCTGAAGGTGTTTCAGTGGGTGATATGTCAAAGCGCAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGAAAAGAAGATTATCAAGCTGAAGTCCCCAAATTTCCATGTGTCAAGGACACGGCTGATTATGTACAATGTTCCCAAGTCAATGACTGAAAAACAGCTGAAGACACTTTGCATTGATGCAGTTACTTCTCGTGCTACTAAGCAAAAGCCTGTTATCCGGCAG................................................................................ATAAAGTTTTTGAAGGACGTGAAAAAAGGACAAGCAGTGGCAAAGAATCATTCTCGTGGAGTAGCTTTTCTTGAGTTTTCAGAGCATGAACATGCACTTGTGGCTTTGAGAGTTCTTAACAACAATCCTG...............................................................................AGACTTTTGGTCCTGAGCATCGACCAATAGTGGAGTTTGCTCTTGACAATATCCAAACAATGAAGCTTCGTCAGAAATTTCAGCAGCAAGGTTTTAACAGGAACCAAGAAGATTTGCAGAAGAAATGAC-ATACGAATGAACGGGATACCCGCGATAAACAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746157" ref_strand="+" ref_description="SGN-E746157 [GI|47104897]">
      <seq>gagaaacaagaaacgccattgcttcttgttcggtgttcttgacaatcgaaacgccattgcttcttgacaatcatatagatgggaaaaaacaagaagacgatgtctggtggcgatagccaacactcaccttccactatttttgttaacaatttaccttattctttcactaatgctcagttggaggagacgttcagtgaagttggacccattaggcggtgttttatggttaccaataaaggttcaagcgagcaccggggttttggctttgtccaatttgcatctgtagacgatgctaaccggtccatcgagctaaagaatggatcagtggttggaggaaggaaaattggtgtcaaacaggctatgcagcgtgctcctcgtgaacaacggcaatcaaagggggatcaagaaagcactgcaaaagtaaaagacggcaaggatggtccttctgctgaatcagttgaatcagttgaggacaaagaagcttcaaacatggagggaacaggaagtaccgcacaagcaaaggacggcaaaaacggtccttctactgaatcagctaagctcaaacaagcttcaaaccctcaaagtattgcacaagaaaaagacgggaaagatggtgcttctactgaagcagctaagcacaaacaagcttcaagccggcaaggaacagagaactcaggtaagcccgctaggaaaaaaaaggctacattgctttccaatggtgcagctgatgatggaaattattcaggaaagcagagggtcgccaggacagttataataggaggaattgtaaatgcaaatatggcaaaagaggctcaccagcttgcggcggagtgtggcaccatatgttctattacttaccctcttccaaaagaagagattgaaaatcatgggctagcacatgatggttgtcaaatggatgcttcatctgtacttttcactagtgtcaaatcagctcaagcttgtgttgcatcattacaccaaaaagaagtacatggagcaacgctttgggcacgacaacttggtggagagggctcaaagactcaacggtggaagcttatattgaggaatcttccttttaaggccaaagtgaatgagataaaagatatgttttcaaaagttggcttcgtgtgggatgtgtttatccctaagaattttgagacagggttatcaaagggatttgcatttgtgaaatttacaacgaagcaggatgcagagaatgctattaagacatttaatgggaaaacaatgaataaacgaactattgcggttgattgggccgtttccaaaaaggtttatgcatctggtggtcaatcttctgcaactgcaatagatgaacagagcgcaaaagatgatagtggtagtgatacggaggatgaagacattgacattgatggaaaatctcagcaagctgaaggggacgaagatgactctgaccttttagaagaagataatcagaccgaatttaactttgatgaggaagcagacattgcaaaaaaaattcttcagaactttatttctccaacttcaatagtgacagctactcccgcagatgatatttcaagcccccaaaagaagggaaaggatgttgaaactattatccccctggatgaaccacttgatgcatctactccgaataaagcactaaatgatgtttcgggcaaggacaaagaagttaaagatatgcagagtgacggagcagatgatctgcaggggacagttttcattagcaaccttccttttgatgttgattatggagaagtcaaacaacggttttcagcttttggtgaagtggagtactttgctccagttcttgaacaagtcaccaaacgaccaaggggtactggatttctcaaatttaaaacagcagcatctgctgaagctgctatttccgctgccagtgttgtggatggtttaggtgtctttctgaagggtcggcagttaaaaattttaaaggccttggacaaaaaagctgctcatgataaggatttgcagaagactaaaaaggaggataatgaccatcgcaacctctacctggcaaaggagggtcttattttggagggcaccccagctgctgaaggtgtttcagtgggtgatatgtcaaagcgcaaggggctgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="77068" stop="66792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76769" g_stop="76593" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76592" i_stop="76521" i_length="72">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76520" g_stop="76460" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="238" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76459" i_stop="76299" i_length="161">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76298" g_stop="76262" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="275" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76261" i_stop="75855" i_length="407">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75854" g_stop="75724" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="406" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75723" i_stop="75606" i_length="118">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75605" g_stop="75510" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="502" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75509" i_stop="75402" i_length="108">
            <donor d_prob="0.250" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75401" g_stop="75237" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="667" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75236" i_stop="74490" i_length="747">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74489" g_stop="74402" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="755" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74401" i_stop="73202" i_length="1200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73201" g_stop="73068" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="889" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="73067" i_stop="72751" i_length="317">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="72750" g_stop="72611" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="890" r_stop="1029" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="72610" i_stop="71135" i_length="1476">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="71134" g_stop="71084" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1030" r_stop="1080" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="71083" i_stop="70956" i_length="128">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="70955" g_stop="70873" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1081" r_stop="1163" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="70872" i_stop="70796" i_length="77">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="70795" g_stop="70741" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1164" r_stop="1218" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="70740" i_stop="69639" i_length="1102">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="69638" g_stop="69524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1219" r_stop="1333" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="69523" i_stop="68038" i_length="1486">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="68037" g_stop="67545" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1334" r_stop="1826" r_length="493" r_score="0.996"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="67544" i_stop="67475" i_length="70">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="67474" g_stop="67261" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1827" r_stop="2040" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="67260" i_stop="67167" i_length="94">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="67166" g_stop="67096" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="2041" r_stop="2111" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2117" polyA_stop="2131"/>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E746157" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2111</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76769" e_stop="76593"/>
          <exon e_start="76520" e_stop="76460"/>
          <exon e_start="76298" e_stop="76262"/>
          <exon e_start="75854" e_stop="75724"/>
          <exon e_start="75605" e_stop="75510"/>
          <exon e_start="75401" e_stop="75237"/>
          <exon e_start="74489" e_stop="74402"/>
          <exon e_start="73201" e_stop="73068"/>
          <exon e_start="72750" e_stop="72611"/>
          <exon e_start="71134" e_stop="71084"/>
          <exon e_start="70955" e_stop="70873"/>
          <exon e_start="70795" e_stop="70741"/>
          <exon e_start="69638" e_stop="69524"/>
          <exon e_start="68037" e_stop="67545"/>
          <exon e_start="67474" e_stop="67261"/>
          <exon e_start="67166" e_stop="67096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACAAGAAACGCCATTGCTTCTTGTTCGGTGTTCTTGACAATCGAAACTCCATTGCTTCTTGACAATCATATAGATGGGAAAAAACAAGAAGACGATGTCTGGTGGCGATAGCCAACACTCACCTTCCACTATTTTTGTTAACAATTTACCTTATTCTTTCACTAATGCTCAGGTAATTTCTTCTTCTTCATTAATTTCAAGATTCTAAACATTGCGTACTTACCAAGATACTAATTATCTGCAGTTGGAGGAGACGTTCAGTGAAGTTGGACCCATTAGGCGGTGTTTTATGGTTACCAATAAAGGTAATTTCTATTGAAAATTTTGTAATTCAACAAGTGGTGTTGTTTTTCAGTTGCCTATTACTAGGTATCAGTATTTCTTGAAACTTATTAAGTCTCCATCTCAAGTTTCTTACATCTTGATGACGTTTCTTGTCCAATTTTCTTCACTTTTGTGTGCATAGGTTCAAGCGAGCACCGGGGTTTTGGCTTTGTCCAATTGTAAGTCAATGCATTAATTGTTTTTTTTTTCTTTTCTGTTAAGAGTGTCTGGGCCTTCTCAAAATTTCTGATTTAATGACATTAATGGAGTAGTTTGAAAATTGAATGCGATAAATAACATGGTTCTTTTCCTTTGCTCATTATCTGCATAGAATATATCACTTTGTTCATAATTATTCAGCATTCTTGTTCTTGAACTTTTTAAAAAATTGTTTTTTTTTAATTATCTTTGAATGTGAGGTTCCAACTTTACATGATTTGACATTGTAATGAAGTTATAGATCGAAGCATTGCTTCGTAGTTGATAAAGTTACATGAGAGAATTATGTTAAGTGGTACTTTTCCCCATCTTGTGTACGTGGCTCATATATTCTGCAACTCATTCTTCCTCATACATGTTGTCATAGTGCATCTGTAGACGATGCTAACCGGTCCATCGAGCTAAAGAATGGATCAGTGGTTGGAGGAAGGAAAATTGGTGTCAAACAGGCTATGCAGCGTGCTCCTCGTGAACAACGGCAATCAAAGGGGGATCAAGGTTTGTGCTACTTTAGTTTTCAAATGGAAAATTTTGCCATGTTCAACAAGGACAACGACCCTAACAGAAAATACCCCAGTGTTGCTAGTTTGACTTTTCTATCAATTATATTATTTAGAAAGCACTGCAAAAGCAAAAGATGGCAAGGATGGTCCTTCTGCTGAATCAGTTGAATCAGTTGAGGACAAAGAAGCTTCAAACATGGAGGGAACAGGTACTTTAGTTTGAAATGGAAACATGGGCCACATTTCAATAAAGAAAATTACACCAACAGATAATACTCCAATTTCTTTGACTTTTCTATCAATTATATATTATTCAGGAAGTACCGCACAAGCAAAGGACGGCAAAAACGGTCCTTCTACTGAATCAGCTAAGCTCAAACAAGCTTCAAACCCTCAAAGTATTGCACAAGAAAAAGACGGGAAAGATGGTGCTTCTACTGAAGCAGCTAAGCACAAACAAGCTTCAAGCCGGCAAGGAACAGGTTCTGAGCTATAAGCATATGGGTGTTATTTTCAATCTAAATGTAGCTCTTTAGTATCTAGTTGCTGCCTGAGAACCCAGTGATGCTTTAAACTGAATGCCTCAAGTTGTTAGATATTAAACCAAAGGATCAGTTAATACATTCAATGCATATCTTTTATGCATACCTTTGGCAACCAACTTGGCATTTCACTAATTTTATAATGGCTGTTTATGAGTCATGACTTGCCATATAACATGTCTCAATAATATATGAACTCAAATTTAAGAGGCATCATATTTTAGATATCAGTTTATACAATTGTTTTTTGACATTTATAAAAATCTATACTTCAGTAAGTATTTCAAGATTCTTGAACAGATACTTATGTTTGAATAAGTGTTGTAGGTTCTCTATTTCTTTCGGAAAACCTCTTGTATGTGGTCGATTTTGGCCCACTTATCATTAATAATATTTTTTTTTACTTGATAAAAAATAATAGAATAAATAATATATAAGACTTCTAAAAAAGATAATACTTTGCATGAGTTTGTATTTATTTTATCGAGTGAAACTATTAAACTTTTATTTCTCGAAAAAAATGCGATGATTTACTTTTAGATTCAATAATGAGTATCATATGAGTTAATGATTTCTGTTTTTAATGTTTATTGGTGATTTAGATTAATAAGTAATACGAAATCCAATCACATAGTGGGATTTTACTTTATTAACGCATCCCCTGACAATGTAACTTATTGTTGTCAGAGAACTCAGGTAAGCCCGCTAGGAAAAAAAAGGCTACATTGCTTTCCAATGGTGCAGCTGATGATGGAAATTATTCAGGAAAGCAGAGGTAATTTCTTGTGTATTTGATATTTCCGCACTTTCATTTGTTAAATTTCACTATTTTTCTTTATTATGAAAATATTCTGCTGAACCTAGAGCTCGTCGCATCGGGCTTGCCTAGTGTTGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGAGGGTTTTACCTTGTGCGCACCCAAAGGGTAGTGGCTGCGAGTTTTCCTTGCATAAAAATAAATATTCTGCTGAACCTACTTATAGATACCGTTTTGCACTCTGCCAATTTCTGTTGATAATAATTTTGGTATTGCGACAACTACAATAACAACAATTTCTCGGTCCAAAACAAGTTGTATTCTGGAGTTTATGTTTGCACGGTTAATTATCGACCAAATATGAAGTACTAAAATTCAAGGGACTGGTGGATTAGTCTTCTGTAAATTGCTGTAGGATGATAATTGTTGTGCTATTATCCATTGTTACTCTAGATTCTTTTCATTTTTGGTGGACTAGTGCTCTAATATCTTGTCTTGCTTGCCTAATTTTGGAGTTCTTGTGTCAGACATATGATGTCTTTCTAGGCACTACTTAGGTGCTAAGGTATTTTATCGGCGTCTAAACTACAATCTCTTGTGACTTTTTTAATCTCCCTCATTTTACCAATATAAAATTTTATGCGTGTTCACACAGTTTTTTGAGAGGCAAAAGTTTGTAGCTGCATATTCATGTACAATTTGTCTAGAAGTGATTATTGACTTTTTTTTGAGACAGAAGTGATTATTGACTTTCAAGAGCAATTTTTCGGTTGAGCTTAAATTGTTATGTTAAAACTTACAGGTATATCACACTTTTGAGTTTAGAGGGGGTGGGGGGTGGGGGTGGGGTTGAAAGGGATCTTGTATAGCTCAGAGATAACCTTTTATTTTTAATGCATCCATGAAGTTCCTGTTTAGATGGTTGAGTTTCTTTTTTAAGGAATCATATTCTTGTGTAGGTGCTATATGGCTATACATTTTGTAACACTTGAAGGGAGTTCTCCCCCCTACATCAACTAATTATTATTTATCAAAAGAGTCGCAGCCATGCCACATCACTGTTTGGCAATTGAAGTTATGCATTTGCATGTTGTATTTGTGATTGTGTAGTTTTTCCTTTTCTGTATTTGACTGGTATAAATCCTCCTCTTTTTTTATGTCTTCCTTCATGTTGAACAGGGTCGCCAGGACAGTTATAATAGGAGGAATTGTAAATGCAAATATGGCAAAAGAGGCTCACCAGCTTGCGGCGGAGTGTGGCACCATATGTTCTATTACTTACCCTCTTCCAAAAGAAGAGATTGAAAATCATGGTAAAACCAACTAAATATGCTTCCCCCTTTCATTTGTTTTGGGCATCCATTTTTGCCCAGATGAATCCCATAGTGACTTTCTTTAACTTTAATCTTTTCTTAAAAACAATGTGCTTGGCAAAAGAGACCCAAGTAAACAATTTTTTAGTTGAAAAACAATGTGCTTGGCAAAAGCTGTTGAGGATTTTGGCTTTGAAGTGGTTACCTTTTTCCCCTGGAAGAAACAAGTTCTATCATGAATTCCAAAGGAAGTTATAAGATACATGTTATTTGTGAATCAGTGGCTAATATATTTTACAAATCTATGAATGCTCTAGGGCTAGCACATGATGGTTGTCAAATGGATGCTTCATCTGTACTTTTCACTAGTGTCAAATCAGCTCAAGCTTGTGTTGCATCATTACACCAAAAAGAAGTACATGGAGCAACGCTTTGGGCACGACAACTTGGTGGAGAGGTTAGGTTGCTGTCATTTTTTTTAGATAATTGGATGCTTCTGTTTTATTAGCTTTTTGTCAAGTGATCTGGCTTTTCTGGGGAAGGTTTAAGCAGTTTGCAATTGTTGGATATGTCCTAAATAATGGTAATCGTTGTCTAAAACATGGTGGTATGAGATGCTTGGGTCAGTATTGAAATTGAAGTCTTGTAGAAATGCCTGAGAGCTGAAGAATAAGCTCCCTGGTATTGTACCGATAAGACACCCCTAGGGCAGACATTCAGGAATTGAAGTCATAAATCCTCCTCGTGGTGTGCAAAAAGACTGTTTTACAAAGGGGATTTAATGCATGCTTAGGAAGAAGTCCTCGACAATTACCTTTGTCAGAATTAGTAGAATCAATATGGGAATGTGCACTTGTGCGGCATGTCCTTTCAGTTTCTATTGTGAAGCTGCGTGTATTTCTAGCAACATTTCACTTTCTCTACCCCCCCCCCCCCCCCACACACAGAGTTAGGCTTAGAATTCCGGGTAGCTCCTTCTTAGCCTGAAAATTGGTGATGTCAGCCAGCATGACCTAGTGGCTTCAAAGTGAAAAATTTGTTGCCGTTCCTGTTATATAATATAATTCCTTAGCTAGGTCTCAGGTTTTTATTATTCTGCTTAACTATTGCTATGCTTTGTTGACCAGGAGTAAGCGTTTGGCATCTGAAAGTCCAAAATAAAGAAAAAAGGGAATATGAGTTAATTCTCCTTATTTACATGTCAAGCAGTTCTCTGTGGGGGTTCCTCATGGTTCTCCTTGTATTACTTCCATTTGAATCCTGTCCCTTTTTGATATTGGTAGTATCTGGTTAATTAGATGTATCTTGACAAATCCACTGTTCATGTCCAATCCACTAGCACAGACTGCTGAGATAATCCTAGTCCCTAGCACAAGGCTAGCATAAATGGGCTCACACCAAGTTGTGTAACTATGATTCAAGCTTAGGATTTTCATGTTGTTACTGCTATTAAGGTTATCACTGTGACTTATACCGCTTACCTCTCTCCTGAAAAAGGCAAGCTAAACCAAATAACCAATAGTCCAAGAATGATTAAAACACTTTAATCACTACAAATATTTGAATGCTTGTAGAGCAAAGTTATTTAGCAAATATAATCACATTGTCAATATAGATTTTTTCACTTCTTAATTAACCAGATACTACCAATATCAACTCATTTTATTTAGCAAAGTTTACGATTTAATATGATTTGATATAGTGATTTGTCCCATCGTTCACTTCTTTGAACCTGACACCTCTTGAGAAGGATAATGGGTACGGCCGTACGCCACTGCCCACATCTTTAACTTGTATAAATGTCTTGTGCGACATTCTTGTTTGGAAGAGGTCTTGTTTCCTTTTATTGGACACTTTTTTCAAGTTGCCTAATTTTGTAATGTATTATTAAGCTGATTGACTTGCACTTTCTTACTAATATATTTCTTACCAGGGCTCAAAGACTCAACGGTGGAAGCTTATATTGAGGAATCTTCCTTTTAAGGTCTTTCCTTCTGCTCTTCACTTTATTAGTTCTATTTCATAAGCTAATCCAGATTTAGTGTACCATTTTCCATTGTATTCGCGTGTGCTCACAGAGCTCTGACCTTTGAGCTTGACAATCAAACGTAGGCCAAAGTGAATGAGATAAAAGATATGTTTTCAAAAGTTGGCTTCGTGTGGGATGTGTTTATCCCTAAGAATTTTGAGACAGGGTAAGGGACTTCCCATTGCAAATTTAAATTTGTTATTGTTAATTGCCACTAGTAACCATTAGTTAGCATTTTTGCAGGTTATCAAAGGGATTTGCATTTGTGAAATTTACAACGAAGCAGGATGCAGAGAATGTATGAACTCACATTTATATCAAGTAACTTTATTAAAATGCTTTAAATTGGTTTATTCAAGGGCTATGTTCTACTTTGAAATTGAGAAGCTGTTAAAGTCTGAGAGAAAGTGAACTATAAAGATAGCAATTTGTGAACTCTTTTCAATTCCACAGACCAAAGTGATCTATGTATTATGTAGTCTTGTCTTCTGGCACTTGAGCCAAGGGTCTTCAGAAGCAACCTCCTTATCTTCACGAGGTAGTGGTAAGGTCTACCCTCCCAAGACCCCACATAGTGGGATTTCACTGTGTATGTTGTTGTTGTGGTCTTCTGGCAAGTTCTCTATAGTGTGGACCATTGGGAATTATAAGATGGACTTTGAACCTGACGGAGGAGTTTGGGGTTGTGGGGGAGGGAGGTGGATACACATGGTTTCAAACAGTGCAACAGGTAGTCCTTTGGAGGTTTCTTGTTTATTGAAAAAGGTATCTTCTAAAGAAGCCTACCTTTGGCTGATTGCAGTTAGGTTTAGTTAGTAATTTGTGAACTCTTTTCAATTCCACAGACCAAAGTGATTTATGTATTAGGTAATCTTGGTCTTCTGGCAAGTTCTTTGTAGGCGACTGGGTCCCATGAAATAGACTTCGAACCCGTTGGAAAACAGGGATCAGGTAGAATTGTCAATTAACTGCCCATGACATTAGTGAAAAGAGGAAGGAGACAGGAGAGTTCAATTGACATTGACCTCACTGTAAGATTTGGTGTAATACCACAGCTAAATTTAGCTGCTCTCCTTGTTTACTCTTTATGCATAGAGTGCTTTTGTGATATGACATAATTTTTGGTAGCACAAATTAGTACATGACCTCAAACATAACCATTACATTGCCCTAAGGCTTAGTTAACATTGTAAACTTTTGGCTGCAGTTTGCATCTGAATAAGTATGATCAGAATTTCGCTTTTATAAGGAGTATATGGAAATGGTAAAAATCACAATGTACTTCCAATTTATGCTTGCGATGTATGGGATGTGCTTACACCACTGAAGTTTTTCTGGGTTGTACCTTTGGATTCTTATCTAGTCTAATCCCTATTTTTGTTTCGTCTATCTCTTTTTAGGCTATTAAGACATTTAATGGGAAAACAATGAATAAACGAACTATTGCGGTTGATTGGGCCGTTTCCAAAAAGGTTTATGCATCTGGTGGTCAATCTTCTGCAACTGCAATAGATGGTAAGCCTCTTTCTTTTTGTCTGAGAATATCCTGTTATATTTTGCTAGATATGTTATCCTTGGCTTAATCTAATCATATCGAGCAAATTTATCTTAGTCATGAAAATAAAGTACTAATGTGGCATCCACTTCTTAGCGTACTTCATATATTCGGACCTATTTGTGCCCAGATTTTGATAAATTATTTACATTATTAATGTCTGAAGTTAATACACCATTGAACCAAGTCAGGTTATAGATTAGGTGGCTCACATTAATTCTTTGGCTTTCTTTTTCTTATTTATTTTAGTGAATACTTGAGAAATGACCAATTTGATATTAATATTATATTGAGCAGACCTTAGTGGGAAAATTATTGCGGATGATCTGTATGTGGTGTTTTTTAACTTCTAGAAAATCCCTCGAGCCATAGTTTTTTCATCTTCTTTTCCTTGCTCCATGTCAAGGTCTGTTTCAAGTAGTATGTGAACTAGAGTTTGCACAAGATGAGGGGAAAAAGGCAATTTTGCATACAGTGCAATGGACTTAGATCTGTCTAGATTAAGCTGAAACTAAAATGCTAATTATGCCTTAGTAGTTGTTGCATTCTTCGGGCTATAATTTATAATTAAGATTCTCCTGCTCCTGCTACATAAATGGATGATTACTTCTTAACATATCTTAGCTGCTTTGGCGTTGTTAGTCAAATGTGTTTGGATGCTAATTTTATTTCCCATGCCTCGTTAAAATCTTCATGCCTCAAAACTGGTTCAGTTTTAATTTGTTCAATATAATATCCATTGTGCAAGTCTTGTTTTGCTTGGTGACTTGAGAAGTCCTAGTTTCCAAAATTTCTCCTCTCTCTATAGGAAGCGATCTAAAGTTCATTGAGGACTGAAGTTGAATGAATGTAAATGTCCTTCAGTGTCTGGGTACCTAATGTGTGATGAGTGACTTGTAGAGACCTGTTACCAATAGTTTAGGTATTTGGGTTTCATTCCACAAGAGCTTATCATTGTTGTTTGATCATGCTTCGGCTTCCTATCCATTTTTTCCCTTCAAAATGTTTCTCTTTTCCTTCTGTTGTAACTCAGAAGTATCTTTTTAGCACCCCATCAACATGTTATCCAACCTCCTTAAATTGACCTTAAAATTGCCAACTACAATACCATTGTATAGGTGCTATGTGATTGCCTCTTCCTAATGTTCAAGGGTACAACTATGGATTGCCCTATCGCTGATTTCTTTTTAAACCTTTGGTAGGTCTGATCTTGAGAATCTTGAATTTCTTTTTTTTTTGGTCATCAAAAAAAGAATGTTGAATTCTTGATGGTTGTCACTTCATATTCATCTAAACTGTTCTGCAGCTAGTTCTTCCGTTTCTCAAATTTTGTTTATGATGGTTGGTGATGATGTTATTACTGTTATGCCAGTTACTCTGTTTATGCTCTTAAATGTGTTGTTTCATGAGTTCGGGAATAATTCAATCTACAATATTCTTCTGCAGAACAGAGCGCAAAAGATGATAGTGGTAGTGATACGGAGGATGAAGACATTGACATTGATGGAAAATCTCAGCAAGCTGAAGGGGACGAAGATGACTCTGACCTTTTAGAAGAAGATAATCAGACCGAATTTAACTTTGATGAGGAAGCAGACATTGCAAAAAAAATTCTTCAGAACTTTATTTCTCCAACTTCAATAGTGACAGCTACTCCCGCAGATGATATTTCAAGCCCCCAAAAGAAGGGAAAGGATGTTGAAACTATTATCCCCGTGGATGAACCACTTGATGCATCTACTCCGAATAAAGCACTAAATGATGTTTCGGGCAAGGACAAAGAAGTTAAAGATATGCAGAGTGAGGGAGCAGATGATCTGCAGGGGACAGTTTTCATTAGCAACCTTCCTTTTGATGTTGATTATGGAGAAGTCAAACAACGGTTTTCAGCTTTTGGTGAAGTGGAGTACTTTGCTCCAGTTCTTGAACAAGTCACCAAGTATGAGTTCTACTATGTGTTTACTCTTTGCTGTCTAATGACTCCGTTAAGCTTATTCTACATTTTGCAGACGACCAAGGGGTACTGGATTTCTCAAATTTAAAACAGCAGCATCTGCTGAAGCTGCTATTTCCGCTGCCAGTGTTGTGGATGGTTTAGGTGTCTTTCTGAAGGGTCGGCAGTTAAAAATTTTAAAGGCCTTGGACAAAAAAGCTGCTCATGATAAGGATTTGCAGAAGACTAAAAAGGAGGACAATGACCATCGCAACCTTTACCTGGCAAAGGTTGGCTTCTATTGGTAATGCCGTTCCGGGCATTTAACTTCTTAATTGAGATCTCTAGGTAATGTGGATGTAATTTTATTCTGGTCTGTAACAGGAGGGTCTTATTTTGGAGGGCACCCCAGCTGCTGAAGGTGTTTCAGTGGGTGATATGTCAAAGCGCAAGGG</genome_strand>
        <mrna_strand>GAGAAACAAGAAACGCCATTGCTTCTTGTTCGGTGTTCTTGACAATCGAAACGCCATTGCTTCTTGACAATCATATAGATGGGAAAAAACAAGAAGACGATGTCTGGTGGCGATAGCCAACACTCACCTTCCACTATTTTTGTTAACAATTTACCTTATTCTTTCACTAATGCTCAG........................................................................TTGGAGGAGACGTTCAGTGAAGTTGGACCCATTAGGCGGTGTTTTATGGTTACCAATAAAG.................................................................................................................................................................GTTCAAGCGAGCACCGGGGTTTTGGCTTTGTCCAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCTGTAGACGATGCTAACCGGTCCATCGAGCTAAAGAATGGATCAGTGGTTGGAGGAAGGAAAATTGGTGTCAAACAGGCTATGCAGCGTGCTCCTCGTGAACAACGGCAATCAAAGGGGGATCAAG......................................................................................................................AAAGCACTGCAAAAGTAAAAGACGGCAAGGATGGTCCTTCTGCTGAATCAGTTGAATCAGTTGAGGACAAAGAAGCTTCAAACATGGAGGGAACAG............................................................................................................GAAGTACCGCACAAGCAAAGGACGGCAAAAACGGTCCTTCTACTGAATCAGCTAAGCTCAAACAAGCTTCAAACCCTCAAAGTATTGCACAAGAAAAAGACGGGAAAGATGGTGCTTCTACTGAAGCAGCTAAGCACAAACAAGCTTCAAGCCGGCAAGGAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTCAGGTAAGCCCGCTAGGAAAAAAAAGGCTACATTGCTTTCCAATGGTGCAGCTGATGATGGAAATTATTCAGGAAAGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGCCAGGACAGTTATAATAGGAGGAATTGTAAATGCAAATATGGCAAAAGAGGCTCACCAGCTTGCGGCGGAGTGTGGCACCATATGTTCTATTACTTACCCTCTTCCAAAAGAAGAGATTGAAAATCATG.............................................................................................................................................................................................................................................................................................................................GGCTAGCACATGATGGTTGTCAAATGGATGCTTCATCTGTACTTTTCACTAGTGTCAAATCAGCTCAAGCTTGTGTTGCATCATTACACCAAAAAGAAGTACATGGAGCAACGCTTTGGGCACGACAACTTGGTGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCAAAGACTCAACGGTGGAAGCTTATATTGAGGAATCTTCCTTTTAAG................................................................................................................................GCCAAAGTGAATGAGATAAAAGATATGTTTTCAAAAGTTGGCTTCGTGTGGGATGTGTTTATCCCTAAGAATTTTGAGACAGG.............................................................................GTTATCAAAGGGATTTGCATTTGTGAAATTTACAACGAAGCAGGATGCAGAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATTAAGACATTTAATGGGAAAACAATGAATAAACGAACTATTGCGGTTGATTGGGCCGTTTCCAAAAAGGTTTATGCATCTGGTGGTCAATCTTCTGCAACTGCAATAGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAGCGCAAAAGATGATAGTGGTAGTGATACGGAGGATGAAGACATTGACATTGATGGAAAATCTCAGCAAGCTGAAGGGGACGAAGATGACTCTGACCTTTTAGAAGAAGATAATCAGACCGAATTTAACTTTGATGAGGAAGCAGACATTGCAAAAAAAATTCTTCAGAACTTTATTTCTCCAACTTCAATAGTGACAGCTACTCCCGCAGATGATATTTCAAGCCCCCAAAAGAAGGGAAAGGATGTTGAAACTATTATCCCCCTGGATGAACCACTTGATGCATCTACTCCGAATAAAGCACTAAATGATGTTTCGGGCAAGGACAAAGAAGTTAAAGATATGCAGAGTGACGGAGCAGATGATCTGCAGGGGACAGTTTTCATTAGCAACCTTCCTTTTGATGTTGATTATGGAGAAGTCAAACAACGGTTTTCAGCTTTTGGTGAAGTGGAGTACTTTGCTCCAGTTCTTGAACAAGTCACCAA......................................................................ACGACCAAGGGGTACTGGATTTCTCAAATTTAAAACAGCAGCATCTGCTGAAGCTGCTATTTCCGCTGCCAGTGTTGTGGATGGTTTAGGTGTCTTTCTGAAGGGTCGGCAGTTAAAAATTTTAAAGGCCTTGGACAAAAAAGCTGCTCATGATAAGGATTTGCAGAAGACTAAAAAGGAGGATAATGACCATCGCAACCTCTACCTGGCAAAG..............................................................................................GAGGGTCTTATTTTGGAGGGCACCCCAGCTGCTGAAGGTGTTTCAGTGGGTGATATGTCAAAGCGCAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367327" ref_strand="+" ref_description="SGN-E367327 [cLPT-7-A11]">
      <seq>ttttttgtcattttgatttgtgttgtgcctgacaattagaaaaaaatatgataatttgagtatagggatcagattttttgttttcaatttggtcaattgaagcttttctgttccccagagaagacacaaatattgctggttttcaggagattgtaatctgatagtcaaccttgtatttgaaactcgatagtaaatcatctccaagtaaaaaagtcattgagaatagtactacagatggccacttattttcctagtccaagcaatcaaagagatgctgatcagacatttcaatattttaggcaatctttgcctgaatcttattcagaagcttcaaatgctccggaaaacatgatggtgttcatgaactattcttcttctgggacatattcagatatgttgacgggtacttaccagcagcaacacagctgcatcgatatcccatctataggagccacgtactgcaacacatcccaacaagaagtattgtcaaatcttggagaatcgcggatgggaattcatgatttttcttcatggagagatagcagaaatgagatgctagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="82040" stop="84119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82311" g_stop="82451" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82452" i_stop="82971" i_length="520">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82972" g_stop="82985" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="159" r_length="13" r_score="0.571"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82986" i_stop="83414" i_length="429">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83415" g_stop="83819" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="561" r_length="402" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E367327" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82311" e_stop="82451"/>
          <exon e_start="82972" e_stop="82985"/>
          <exon e_start="83415" e_stop="83819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTCTTTTTGATTTGTGTTATGCCTGAGAATTAG---AA--TATGATAATTTGAGTATAGGGATCAGATTTTTTGTTTTCAATTTGGTCAATTGAAGCTTTTCTGTTCCCCAGAGAAGACACAAATATTGCTGGTTTTCAGGTAAAAGATTAGTATTATTATACTAAAATATTTTCTCCATTTTGACTTTGTTCACAAAACAAATGGATTGTTGTCAGTGGCTGGTAAAGAAGAAAAGAAATAGTACTACATAATAGTAGTAGTAATTTAGTAATCCCCAATTGCTTTCATGATACTTTTGTTATTACGAAATTTTACTAGCTCAGTTGATTTGCTATCTAAATTTTTAATTTTACTGGTATAAGTTCGATTCACTGTCTTATAATCCTCTCCCCAATTATATATATGTATATTTTTATAAAAAAAAGTGATTAGTATTGGAAAATGGTTGCTGCTGAATTTTATTATTGAATGGGTTCAGATTTCAGAACAGATTATTTTGTTTAATGGATTCTCAACTTTTTGGTATGGATATTTTGTTTTGTTGTCTGACTAGGTTTGGAGTTTTGGAAGGTATAAGAATTGGGAAAGATGGGTGTTTCAATATGTTATTGGTTATTATATTAATGTTTGAGTTGATTTTTAATTTCTCTAAAAGTAGGGTAAGGTCATCCTATATCCTGCCCATCCCCACAGACCTCATTTGCGGAATTATGTTGGATATGTTGTTGTTAGTTGATTTTGAATTCTGATTGGAAATCACTTTGATTTTAATGAAGAATATGTAGAAGTGAAGCATATATAAATAAACGTGTACAGCAGTTGCAACAGCTTTTGATGTTTGACATTCGTCGTGTCTTTGATCATGTTTTCGGATCATCTTCCTAGAGTTTGAAATTGGCGAAGTGCGTAAAACATGGATAAGGATTCAACCAATACAAGATATTCAAAATATAATCTCACAAGTGGAGTCTGGGAGGGTAGGATGTAAGCAGAGCTTACCCCTACCAATACGTTAACTAATTAATTTCATGTTTCTATATAGTTTAGTGCCATAGTGCTTGTCATTTTCATGTCACTGAAATCATAACTTTCTGTTTGCAGGAGATTGTAATTTGATAGATTTGAAACTCGATAGTAAATCATCTCCAAGTAAAAAAGTCATTGAGAATAGTACTACAGATGGCCACTTATTTTCCTAGTCCAAGCAATCAAAGAGATGCTGATCAGACATTTCAATATTTTAGGCAATCTTTGCCTGAATCTTATTCAGAAGCTTCAAATGCTCCGGAAAACATGATGGTGTTCATGAACTATTCTTCTTCTGGGACATATTCAGATATGTTGACGGGTACTTCCCAACAGCAACACAGCTGCATCGATATCCCATCTATAGGAGCCACGTCCTCCAACACATCCCAACAAGAAGTATTGTCAAATCTTGGAGAATCGCGGATGGGAATTCAGGATTTTTCTTCATGGAGAGATAGCAGAAATGAGATGCTAGCT</genome_strand>
        <mrna_strand>TTTTTTGTCATTTTGATTTGTGTTGTGCCTGACAATTAGAAAAAAATATGATAATTTGAGTATAGGGATCAGATTTTTTGTTTTCAATTTGGTCAATTGAAGCTTTTCTGTTCCCCAGAGAAGACACAAATATTGCTGGTTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATTGTAAT-CT.............................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCAACCTTG-T--ATTTGAAACTCGATAGTAAATCATCTCCAAGTAAAAAAGTCATTGAGAATAGTACTACAGATGGCCACTTATTTTCCTAGTCCAAGCAATCAAAGAGATGCTGATCAGACATTTCAATATTTTAGGCAATCTTTGCCTGAATCTTATTCAGAAGCTTCAAATGCTCCGGAAAACATGATGGTGTTCATGAACTATTCTTCTTCTGGGACATATTCAGATATGTTGACGGGTACTTACCAGCAGCAACACAGCTGCATCGATATCCCATCTATAGGAGCCACGTACTGCAACACATCCCAACAAGAAGTATTGTCAAATCTTGGAGAATCGCGGATGGGAATTCATGATTTTTCTTCATGGAGAGATAGCAGAAATGAGATGCTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738207" ref_strand="+" ref_description="SGN-E738207 [LC12DB04]">
      <seq>ggcggttttaacatgtcctttggagatggtgataattcccaaccaaaagaacaaagaaatgctgattattttcctccggatcatcctggaagagatcttggatgctatgaaagggtataattctccatatggtacgtcgagtattgcaaggaccattcccagctcgaagtatttgaaagcagctcaatatttgcttgatgaggttgttagtgtcagaaaggccatcaaggagcaaaattctaagaaagagttgacaaaggattcgagagagcctgacctggactcgaaaaatatatcatcagatactcctgcaaatggaggttcaaatcctcatgagtccaaaaacaaccaaagtgaactttcagctaccgagaagcaagaagtgcagaacaaactgaccaaacttctgtcaatgctggatgagattgatagaaggtacagacaatattatcatcagatgcaaatagtggtctcatcatttgatgtagtagctggagatggagcagcaaaaccatacacagctcttgctcttcagacaatttccagacactttcgttgcttgcgtgatgcaatctgcgatcagattcgagcatcacgaagaagtcttggagagcaagatgcttcagaaaacagcaaagcgattggaatatcacgcctgcgttttgtggatcagcatattagacagcagagagccctgcagcagcttggtatgatgcaacaacatgcctggaggcctcagaggggattgcctgaaagctctgtttcagttttgcgtgcttggctctttgagcactttcttcatccctacccgaaagattctgaaaaaattatgctagcaaggcaaactggcttaacgagaagtcaggtatncaattggttcataaatgcacgagttcgtctttggaaacccatggttgaggaaatgtacaaagaaaaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="83640" stop="87353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83940" g_stop="84362" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84363" i_stop="85848" i_length="1486">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85849" g_stop="86228" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="804" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86229" i_stop="86360" i_length="132">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86361" g_stop="86421" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="865" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86422" i_stop="86977" i_length="556">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86978" g_stop="87053" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="866" r_stop="941" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E738207" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83940" e_stop="84362"/>
          <exon e_start="85849" e_stop="86228"/>
          <exon e_start="86361" e_stop="86421"/>
          <exon e_start="86978" e_stop="87053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGTTTTAACATGTCCTTTGGAGATGGTGATAATTCCCAACCAAAAGAACAAAGAAATGCTGATTATTTTCCTCCGGATCATCCTGGAAGAGA-CTTGGATGCTATGAAAGGGTATAATTCTCCATATGGTACGTCGAGTATTGCAAGGACCATTCCCAGCTCGAAGTATTTGAAAGCAGCTCAATATTTGCTTGATGAGGTTGTTAGTGTCAGAAAGGCCATCAAGGAGCAAAATTCTAAGAAAGAGTTGACAAAGGATTCGAGAGAGCCTGACCTGGACTCGAAAAATATATCATCAGATACTCCTGCAAATGGAGGTTCAAATCCTCATGAGTCCAAAAACAACCAAAGTGAACTTTCAGCTACCGAGAAGCAAGAAGTGCAGAACAAACTGACCAAACTTCTGTCAATGCTGGATGAGGTATGGCCTATGGAAATATTTTTTTGTGTATCAGTTTTGATGATTTCCGATGTTCTAATCCAATGCTTCACAAATTTTTTATTTTCTTATTTCAATTGATGATTGCGTTGAAAGGAGTCAAACTAGTGGCTGCAGTATGTTGAGGACTTCTTTGACTGTCCACATTCATCTTTCCATCGACTTACTTGTCTGAGAGACCTTCTAACTGTGATGAAATAGATTAACTATTATCTGACAAAGAAAATACCATGAATGAAGCATATTATCTGATGATATTTCAACTTCCATGCACATTTTGAAGTTGTTCTCAAATATATTTCCATGAATTTGGTAATACAATAACTTAGTTTGGATACTCACTTCATAGGGTACTAATAGAGAGTTAACTATTATAGCAGTATCATTACTTATTACTATATTTCCAGTGAGTGGCTTCTCTAAAATGGCAAAGTAATGGTTACAAGGCATGACTAACTGCAGAATGATACAAGATATACTCTTGGGTCCTCAGATTTACCTGGGAATGTGGGCAATGAGGGTTGAAGTTGAACAAAACTGCATCAAGGAAATGTTAATCCAAAAACACCTATAGTTATTATTTTCCTTTCCCCCCTCCCTTTCTTTTCTCCCCGCTGCTAGAATGACACTAGAAGTGTAGCTTGGTAGCTAATCTCAGTGGCATAAATTTGTGGAAAGGCCTGCAAAATGTTCAGTTTCATGAGCACATGATTGAAACATGGGTGATACCATGGTGTTATATCTATCTTGGGAAAATAGTCAATTCCTAGTGTAGGATAATGGTTATTTATGTTAAGTTACAGTAACATAGTGTATTCCCACAAGTGAGGTCTGGGAAGGATAGCGAGTACGCGGACCTTACCTCGTTACTTGTGTTCAGTTAATGAAGGGAATTTCTTGTATATTGGCATCCTTCTTTTTACTTGTCCACTTCTGCCAGAGTTTCTAGTAATTAAGTTTATGAATGCACTGATGGTATTGAGAGTTCACAATTAGGCTGCAGTTTATACCTTTGTAGCAGGTATTATTCCTGAATGTATATTCTTCCTTCAATTGTTCTAGTACGTGTCTAGATTTATAATTTAGGGCAAACGTCAAGAATGTAAGAGAGTTCTCCGATCTGCTTACTGAAGACATGATCTTAGATAGGAAAATTCATAGGTCGAGGGTAAGGGCAGATGAGTATAGGTAGCCAAGAGTTGTGGTACATCTTGTTCTCCTAATTTCACTATTACCTATTGTTTCATTTGTTTGGTTTTCCTATTTTGCTGTCGGTTTTTTCTTTTTATCATGATGTTGCATTTGGGTCCATCAGAAACAAACCTCTCTAGCCCACAAAGGTAGGGATAAGGTATGTGTACATCCTACCTCCCCAGGCCCCACTTGTGGAATTACATCGGGTATGTTATTTTTGTTGCCATGTGTAATTTGCATGAAGTGGAAGTTGAACTATGGTGTATTGTCACAGATTGATAGAAGGTACAGACAATATTATCATCAGATGCAAATAGTGGTCTCATCATTTGATGTAGTAGCTGGAGATGGAGCAGCAAAACCATACACAGCTCTTGCTCTTCAGACAATTTCCAGACACTTTCGTTGCTTGCGTGATGCAATCTGCGATCAGATTCGAGCATCACGAAGAAGTCTTGGAGAGCAAGATGCTTCAGAAAACAGCAAAGCGATTGGAATATCACGCCTGCGTTTTGTGGATCAGCATATTAGACAGCAGAGAGCCCTGCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCTCAGAGGGGATTGCCTGAAAGCTCTGTTTCAGTTTTGCGTGCTTGGCTCTTTGAGCACTTTCTTCATCCGTAAGTTGATTAATTTAGACTGCATCCAGCACACGTTATTAAGCTTTTTCTTGAATTTGTATTGTTAGGAGACTTCAGTCATTCAAAAGAACTTTGGTCGTCGTCTAATTTGTAATTGTTTCTCTTTTCCAGCTACCCGAAAGATTCTGAAAAAATTATGCTAGCAAGGCAAACTGGCTTAACGAGAAGTCAGGTATAAGGTTTTTCTGTCAGCATGTGTATTTTTGCATCTGAAACATTTTCCATTAGTCTTACTTTGGTGAATACATTTATCCTATTTTGAACCTACAGAACTCAGCCACATGGATTATTCCATACATGAGATTAACTTAAAGGATGGTCTGGAAACTGGAGCCAAATTTTTGTTCATGCAAAGAGTGTTTACACACATGTTTGAAACTTCACTTTTCTTACAATGATCACCATAAAGTGCTGAGTTTGTATAAAATCTTTAGGTGTTCGTTCGTTTATTCCGGCTGATGGATTACTGAAGATGAGTTCTAAAATTTTAAGTCAACTGGATCATGTGGTAGAGGGCTCCTTCCTGCATCAGTGCAGTAACACACAAAGTTCTTAAATTTGACTTTTGTGCACTGAACAAAGTCTATAGTTTCTTAAAGAAAAGTTCATTTGGTTCAAAAATAGCAGGCTTTTGCCAATCACAAAATCATATGCATTTGGTTCATTTGCGTTGATGGACGTTTGGTCGTGGCTCAATATTTCATTGATGAATGGGTGTCATGTTTCAGGTATCAAATTGGTTCATAAATGCACGAGTTCGTCTTTGGAAACCCATGGTTGAGGAAATGTACAAAGAAGAGGCTG</genome_strand>
        <mrna_strand>GGCGGTTTTAACATGTCCTTTGGAGATGGTGATAATTCCCAACCAAAAGAACAAAGAAATGCTGATTATTTTCCTCCGGATCATCCTGGAAGAGATCTTGGATGCTATGAAAGGGTATAATTCTCCATATGGTACGTCGAGTATTGCAAGGACCATTCCCAGCTCGAAGTATTTGAAAGCAGCTCAATATTTGCTTGATGAGGTTGTTAGTGTCAGAAAGGCCATCAAGGAGCAAAATTCTAAGAAAGAGTTGACAAAGGATTCGAGAGAGCCTGACCTGGACTCGAAAAATATATCATCAGATACTCCTGCAAATGGAGGTTCAAATCCTCATGAGTCCAAAAACAACCAAAGTGAACTTTCAGCTACCGAGAAGCAAGAAGTGCAGAACAAACTGACCAAACTTCTGTCAATGCTGGATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATAGAAGGTACAGACAATATTATCATCAGATGCAAATAGTGGTCTCATCATTTGATGTAGTAGCTGGAGATGGAGCAGCAAAACCATACACAGCTCTTGCTCTTCAGACAATTTCCAGACACTTTCGTTGCTTGCGTGATGCAATCTGCGATCAGATTCGAGCATCACGAAGAAGTCTTGGAGAGCAAGATGCTTCAGAAAACAGCAAAGCGATTGGAATATCACGCCTGCGTTTTGTGGATCAGCATATTAGACAGCAGAGAGCCCTGCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCTCAGAGGGGATTGCCTGAAAGCTCTGTTTCAGTTTTGCGTGCTTGGCTCTTTGAGCACTTTCTTCATCC....................................................................................................................................CTACCCGAAAGATTCTGAAAAAATTATGCTAGCAAGGCAAACTGGCTTAACGAGAAGTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATNCAATTGGTTCATAAATGCACGAGTTCGTCTTTGGAAACCCATGGTTGAGGAAATGTACAAAGAAAAGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545574" ref_strand="+" ref_description="SGN-E545574 [TUS-68-H22]">
      <seq>cagatactcctgcaaatggaggttcaaatcctcatgagtccaaaaacaaccaaagtgaactttcagctaccgagaagcaagaagtgcagaacaaactgaccaaacttctgtcaatgctggatgagattgatagaaggtacagacaatattatcatcagatgcaaatagtggtctcatcatttgatgtagtagctggagatggagcagcaaaaccatacacagctcttgctcttcagacaatttccagacactttcgttgcttgcgtgatgcaatctgcgatcagattcgagcatcacgaagaagtcttggagagcaagatgcttcagaaaacagcaaagcgattggaatatcacgcctgcgttttgtggatcagcatattagacagcagagagccctgcagcagcttggtatgatgcaacaacatgcctggaggcctcagaggggattgcctgaaagctctgtttcagttttgcgtgcttggctctttgagcactttcttcatccctacccgaaagattctgaaaaaattatgctagcaaggcaaactggcttaacgagaagtcaggtatcaaattggttcataaatgcacgagttcgtctttggaaacccatggttgaggaaatgtacaaagaagaggctggtgatgctaagatagactcaaattcttcatcagaggttgcccccagacttgcatcaaangactcaaaagttgaagaaagaggagaattgcaccagaatacagcttcagaatttgagcagtacaatagtggcccaatcctggagtcaaaatcttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="83938" stop="87509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84238" g_stop="84362" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84363" i_stop="85848" i_length="1486">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85849" g_stop="86228" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="505" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86229" i_stop="86360" i_length="132">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86361" g_stop="86421" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="566" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86422" i_stop="86977" i_length="556">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86978" g_stop="87209" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="798" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E545574" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84238" e_stop="84362"/>
          <exon e_start="85849" e_stop="86228"/>
          <exon e_start="86361" e_stop="86421"/>
          <exon e_start="86978" e_stop="87209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATACTCCTGCAAATGGAGGTTCAAATCCTCATGAGTCCAAAAACAACCAAAGTGAACTTTCAGCTACCGAGAAGCAAGAAGTGCAGAACAAACTGACCAAACTTCTGTCAATGCTGGATGAGGTATGGCCTATGGAAATATTTTTTTGTGTATCAGTTTTGATGATTTCCGATGTTCTAATCCAATGCTTCACAAATTTTTTATTTTCTTATTTCAATTGATGATTGCGTTGAAAGGAGTCAAACTAGTGGCTGCAGTATGTTGAGGACTTCTTTGACTGTCCACATTCATCTTTCCATCGACTTACTTGTCTGAGAGACCTTCTAACTGTGATGAAATAGATTAACTATTATCTGACAAAGAAAATACCATGAATGAAGCATATTATCTGATGATATTTCAACTTCCATGCACATTTTGAAGTTGTTCTCAAATATATTTCCATGAATTTGGTAATACAATAACTTAGTTTGGATACTCACTTCATAGGGTACTAATAGAGAGTTAACTATTATAGCAGTATCATTACTTATTACTATATTTCCAGTGAGTGGCTTCTCTAAAATGGCAAAGTAATGGTTACAAGGCATGACTAACTGCAGAATGATACAAGATATACTCTTGGGTCCTCAGATTTACCTGGGAATGTGGGCAATGAGGGTTGAAGTTGAACAAAACTGCATCAAGGAAATGTTAATCCAAAAACACCTATAGTTATTATTTTCCTTTCCCCCCTCCCTTTCTTTTCTCCCCGCTGCTAGAATGACACTAGAAGTGTAGCTTGGTAGCTAATCTCAGTGGCATAAATTTGTGGAAAGGCCTGCAAAATGTTCAGTTTCATGAGCACATGATTGAAACATGGGTGATACCATGGTGTTATATCTATCTTGGGAAAATAGTCAATTCCTAGTGTAGGATAATGGTTATTTATGTTAAGTTACAGTAACATAGTGTATTCCCACAAGTGAGGTCTGGGAAGGATAGCGAGTACGCGGACCTTACCTCGTTACTTGTGTTCAGTTAATGAAGGGAATTTCTTGTATATTGGCATCCTTCTTTTTACTTGTCCACTTCTGCCAGAGTTTCTAGTAATTAAGTTTATGAATGCACTGATGGTATTGAGAGTTCACAATTAGGCTGCAGTTTATACCTTTGTAGCAGGTATTATTCCTGAATGTATATTCTTCCTTCAATTGTTCTAGTACGTGTCTAGATTTATAATTTAGGGCAAACGTCAAGAATGTAAGAGAGTTCTCCGATCTGCTTACTGAAGACATGATCTTAGATAGGAAAATTCATAGGTCGAGGGTAAGGGCAGATGAGTATAGGTAGCCAAGAGTTGTGGTACATCTTGTTCTCCTAATTTCACTATTACCTATTGTTTCATTTGTTTGGTTTTCCTATTTTGCTGTCGGTTTTTTCTTTTTATCATGATGTTGCATTTGGGTCCATCAGAAACAAACCTCTCTAGCCCACAAAGGTAGGGATAAGGTATGTGTACATCCTACCTCCCCAGGCCCCACTTGTGGAATTACATCGGGTATGTTATTTTTGTTGCCATGTGTAATTTGCATGAAGTGGAAGTTGAACTATGGTGTATTGTCACAGATTGATAGAAGGTACAGACAATATTATCATCAGATGCAAATAGTGGTCTCATCATTTGATGTAGTAGCTGGAGATGGAGCAGCAAAACCATACACAGCTCTTGCTCTTCAGACAATTTCCAGACACTTTCGTTGCTTGCGTGATGCAATCTGCGATCAGATTCGAGCATCACGAAGAAGTCTTGGAGAGCAAGATGCTTCAGAAAACAGCAAAGCGATTGGAATATCACGCCTGCGTTTTGTGGATCAGCATATTAGACAGCAGAGAGCCCTGCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCTCAGAGGGGATTGCCTGAAAGCTCTGTTTCAGTTTTGCGTGCTTGGCTCTTTGAGCACTTTCTTCATCCGTAAGTTGATTAATTTAGACTGCATCCAGCACACGTTATTAAGCTTTTTCTTGAATTTGTATTGTTAGGAGACTTCAGTCATTCAAAAGAACTTTGGTCGTCGTCTAATTTGTAATTGTTTCTCTTTTCCAGCTACCCGAAAGATTCTGAAAAAATTATGCTAGCAAGGCAAACTGGCTTAACGAGAAGTCAGGTATAAGGTTTTTCTGTCAGCATGTGTATTTTTGCATCTGAAACATTTTCCATTAGTCTTACTTTGGTGAATACATTTATCCTATTTTGAACCTACAGAACTCAGCCACATGGATTATTCCATACATGAGATTAACTTAAAGGATGGTCTGGAAACTGGAGCCAAATTTTTGTTCATGCAAAGAGTGTTTACACACATGTTTGAAACTTCACTTTTCTTACAATGATCACCATAAAGTGCTGAGTTTGTATAAAATCTTTAGGTGTTCGTTCGTTTATTCCGGCTGATGGATTACTGAAGATGAGTTCTAAAATTTTAAGTCAACTGGATCATGTGGTAGAGGGCTCCTTCCTGCATCAGTGCAGTAACACACAAAGTTCTTAAATTTGACTTTTGTGCACTGAACAAAGTCTATAGTTTCTTAAAGAAAAGTTCATTTGGTTCAAAAATAGCAGGCTTTTGCCAATCACAAAATCATATGCATTTGGTTCATTTGCGTTGATGGACGTTTGGTCGTGGCTCAATATTTCATTGATGAATGGGTGTCATGTTTCAGGTATCAAATTGGTTCATAAATGCACGAGTTCGTCTTTGGAAACCCATGGTTGAGGAAATGTACAAAGAAGAGGCTGGTGATGCTAAGATAGACTCAAATTCTTCATCAGAGGTTGCCCCCAGACTTGCATCAAAAGACTCAAAAGTTGAAGAAAGAGGAGAATTGCACCAGAATACAGCTTCAGAATTTGAGCAGTACAATAGTGGCCAAATCCTGGAGTCAAAATCTTACC</genome_strand>
        <mrna_strand>CAGATACTCCTGCAAATGGAGGTTCAAATCCTCATGAGTCCAAAAACAACCAAAGTGAACTTTCAGCTACCGAGAAGCAAGAAGTGCAGAACAAACTGACCAAACTTCTGTCAATGCTGGATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATAGAAGGTACAGACAATATTATCATCAGATGCAAATAGTGGTCTCATCATTTGATGTAGTAGCTGGAGATGGAGCAGCAAAACCATACACAGCTCTTGCTCTTCAGACAATTTCCAGACACTTTCGTTGCTTGCGTGATGCAATCTGCGATCAGATTCGAGCATCACGAAGAAGTCTTGGAGAGCAAGATGCTTCAGAAAACAGCAAAGCGATTGGAATATCACGCCTGCGTTTTGTGGATCAGCATATTAGACAGCAGAGAGCCCTGCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCTCAGAGGGGATTGCCTGAAAGCTCTGTTTCAGTTTTGCGTGCTTGGCTCTTTGAGCACTTTCTTCATCC....................................................................................................................................CTACCCGAAAGATTCTGAAAAAATTATGCTAGCAAGGCAAACTGGCTTAACGAGAAGTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAAATTGGTTCATAAATGCACGAGTTCGTCTTTGGAAACCCATGGTTGAGGAAATGTACAAAGAAGAGGCTGGTGATGCTAAGATAGACTCAAATTCTTCATCAGAGGTTGCCCCCAGACTTGCATCAAANGACTCAAAAGTTGAAGAAAGAGGAGAATTGCACCAGAATACAGCTTCAGAATTTGAGCAGTACAATAGTGGCCCAATCCTGGAGTCAAAATCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311081" ref_strand="+" ref_description="SGN-E311081 [cLEZ-17-N2]">
      <seq>agatactcctgcaaatggaggttcaaatcctcatgagtccaaaaacaaccaaagtgaactttcagctaccgagaagcaagaagtgcagaacaaactgaccaaacttctgtcaatgctggatgagattgatagaaggtacagacaatattatcatcagatgcaaatagtggtctcatcatttgatgtagtagctggagatggagcagcaaaaccatacacagctcttgctcttcagacaatttccagacactttcgttgcttgcgtgatgcaatctgcgatcagattcgagcatcacgaagaagtcttggagagcaagatgcttcagaaaacagcaaagcgattggaatatcacgcctgcgttttgtggatcagcatattagacagcagagagccctgcagcagcttggtatgatgcaacaacatgcctggaggcctcagaggggattgcctgaaagctctgtttcagttttgcgtgcttggctctttgagcactttcttcatccctacccgaaagattctgaaaaaattatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="83939" stop="86690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84239" g_stop="84362" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84363" i_stop="85848" i_length="1486">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85849" g_stop="86228" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="504" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86229" i_stop="86360" i_length="132">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86361" g_stop="86390" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="534" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E311081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84239" e_stop="84362"/>
          <exon e_start="85849" e_stop="86228"/>
          <exon e_start="86361" e_stop="86390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACTCCTGCAAATGGAGGTTCAAATCCTCATGAGTCCAAAAACAACCAAAGTGAACTTTCAGCTACCGAGAAGCAAGAAGTGCAGAACAAACTGACCAAACTTCTGTCAATGCTGGATGAGGTATGGCCTATGGAAATATTTTTTTGTGTATCAGTTTTGATGATTTCCGATGTTCTAATCCAATGCTTCACAAATTTTTTATTTTCTTATTTCAATTGATGATTGCGTTGAAAGGAGTCAAACTAGTGGCTGCAGTATGTTGAGGACTTCTTTGACTGTCCACATTCATCTTTCCATCGACTTACTTGTCTGAGAGACCTTCTAACTGTGATGAAATAGATTAACTATTATCTGACAAAGAAAATACCATGAATGAAGCATATTATCTGATGATATTTCAACTTCCATGCACATTTTGAAGTTGTTCTCAAATATATTTCCATGAATTTGGTAATACAATAACTTAGTTTGGATACTCACTTCATAGGGTACTAATAGAGAGTTAACTATTATAGCAGTATCATTACTTATTACTATATTTCCAGTGAGTGGCTTCTCTAAAATGGCAAAGTAATGGTTACAAGGCATGACTAACTGCAGAATGATACAAGATATACTCTTGGGTCCTCAGATTTACCTGGGAATGTGGGCAATGAGGGTTGAAGTTGAACAAAACTGCATCAAGGAAATGTTAATCCAAAAACACCTATAGTTATTATTTTCCTTTCCCCCCTCCCTTTCTTTTCTCCCCGCTGCTAGAATGACACTAGAAGTGTAGCTTGGTAGCTAATCTCAGTGGCATAAATTTGTGGAAAGGCCTGCAAAATGTTCAGTTTCATGAGCACATGATTGAAACATGGGTGATACCATGGTGTTATATCTATCTTGGGAAAATAGTCAATTCCTAGTGTAGGATAATGGTTATTTATGTTAAGTTACAGTAACATAGTGTATTCCCACAAGTGAGGTCTGGGAAGGATAGCGAGTACGCGGACCTTACCTCGTTACTTGTGTTCAGTTAATGAAGGGAATTTCTTGTATATTGGCATCCTTCTTTTTACTTGTCCACTTCTGCCAGAGTTTCTAGTAATTAAGTTTATGAATGCACTGATGGTATTGAGAGTTCACAATTAGGCTGCAGTTTATACCTTTGTAGCAGGTATTATTCCTGAATGTATATTCTTCCTTCAATTGTTCTAGTACGTGTCTAGATTTATAATTTAGGGCAAACGTCAAGAATGTAAGAGAGTTCTCCGATCTGCTTACTGAAGACATGATCTTAGATAGGAAAATTCATAGGTCGAGGGTAAGGGCAGATGAGTATAGGTAGCCAAGAGTTGTGGTACATCTTGTTCTCCTAATTTCACTATTACCTATTGTTTCATTTGTTTGGTTTTCCTATTTTGCTGTCGGTTTTTTCTTTTTATCATGATGTTGCATTTGGGTCCATCAGAAACAAACCTCTCTAGCCCACAAAGGTAGGGATAAGGTATGTGTACATCCTACCTCCCCAGGCCCCACTTGTGGAATTACATCGGGTATGTTATTTTTGTTGCCATGTGTAATTTGCATGAAGTGGAAGTTGAACTATGGTGTATTGTCACAGATTGATAGAAGGTACAGACAATATTATCATCAGATGCAAATAGTGGTCTCATCATTTGATGTAGTAGCTGGAGATGGAGCAGCAAAACCATACACAGCTCTTGCTCTTCAGACAATTTCCAGACACTTTCGTTGCTTGCGTGATGCAATCTGCGATCAGATTCGAGCATCACGAAGAAGTCTTGGAGAGCAAGATGCTTCAGAAAACAGCAAAGCGATTGGAATATCACGCCTGCGTTTTGTGGATCAGCATATTAGACAGCAGAGAGCCCTGCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCTCAGAGGGGATTGCCTGAAAGCTCTGTTTCAGTTTTGCGTGCTTGGCTCTTTGAGCACTTTCTTCATCCGTAAGTTGATTAATTTAGACTGCATCCAGCACACGTTATTAAGCTTTTTCTTGAATTTGTATTGTTAGGAGACTTCAGTCATTCAAAAGAACTTTGGTCGTCGTCTAATTTGTAATTGTTTCTCTTTTCCAGCTACCCGAAAGATTCTGAAAAAATTATGCT</genome_strand>
        <mrna_strand>AGATACTCCTGCAAATGGAGGTTCAAATCCTCATGAGTCCAAAAACAACCAAAGTGAACTTTCAGCTACCGAGAAGCAAGAAGTGCAGAACAAACTGACCAAACTTCTGTCAATGCTGGATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATAGAAGGTACAGACAATATTATCATCAGATGCAAATAGTGGTCTCATCATTTGATGTAGTAGCTGGAGATGGAGCAGCAAAACCATACACAGCTCTTGCTCTTCAGACAATTTCCAGACACTTTCGTTGCTTGCGTGATGCAATCTGCGATCAGATTCGAGCATCACGAAGAAGTCTTGGAGAGCAAGATGCTTCAGAAAACAGCAAAGCGATTGGAATATCACGCCTGCGTTTTGTGGATCAGCATATTAGACAGCAGAGAGCCCTGCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCTCAGAGGGGATTGCCTGAAAGCTCTGTTTCAGTTTTGCGTGCTTGGCTCTTTGAGCACTTTCTTCATCC....................................................................................................................................CTACCCGAAAGATTCTGAAAAAATTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699479" ref_strand="+" ref_description="SGN-E699479 [FA10BB01]">
      <seq>ccactaattgatagaaggtacagacaatattatcatcagatgccaatagtggtctcatcatttgatgtagtagctggagatggagcagcaaaaccatacacagctcttgctcttcagacaatttccagacactttcgttgcttgcgtgatgcaatctgcgatcagattcgagcatcacgaagaagtcttggagagcaagatgcttcagaaaacagcaaagcgattggaatatcacgcctgcgttttgtggatcagcatattagacagcagagagccctgcagcagcttggtatgatgcaacaacatgcctggaggcctcagaggggattgcctgaaagctctgtttcagttttgcgtgcttggctctttgagcactttcttcatccctacccgaaagattctgaaaaaattatgctagcaaggcaaactggcttaacgagaagtcaggtatcaaattggttcataaatgcacgagttcgtctttggaaacccatggttgaggaaatgtacaaagaagaggctggtgatgctaagatagactcaaattcttcatcagaggttgcccccagacttgcatcaaaagactcaaaagttgaagaaagaggagaattgcaccagaatacagcttcagaatttgagcagtacaatagtggccaaatcctggagtcaaaatcttaccatgaagctgatgcagaaatggagggagcaagtaatgcagaaactcaaagtcaatctggaatggaaaatccaaacagaggaacccctgcctgctatggataattgcaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="85544" stop="87618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85843" g_stop="86228" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86229" i_stop="86360" i_length="132">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86361" g_stop="86421" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="447" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86422" i_stop="86977" i_length="556">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86978" g_stop="87318" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="789" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E699479" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85843" e_stop="86228"/>
          <exon e_start="86361" e_stop="86421"/>
          <exon e_start="86978" e_stop="87318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGATTGATAGAAGGTACAGACAATATTATCATCAGATGCAAATAGTGGTCTCATCATTTGATGTAGTAGCTGGAGATGGAGCAGCAAAACCATACACAGCTCTTGCTCTTCAGACAATTTCCAGACACTTTCGTTGCTTGCGTGATGCAATCTGCGATCAGATTCGAGCATCACGAAGAAGTCTTGGAGAGCAAGATGCTTCAGAAAACAGCAAAGCGATTGGAATATCACGCCTGCGTTTTGTGGATCAGCATATTAGACAGCAGAGAGCCCTGCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCTCAGAGGGGATTGCCTGAAAGCTCTGTTTCAGTTTTGCGTGCTTGGCTCTTTGAGCACTTTCTTCATCCGTAAGTTGATTAATTTAGACTGCATCCAGCACACGTTATTAAGCTTTTTCTTGAATTTGTATTGTTAGGAGACTTCAGTCATTCAAAAGAACTTTGGTCGTCGTCTAATTTGTAATTGTTTCTCTTTTCCAGCTACCCGAAAGATTCTGAAAAAATTATGCTAGCAAGGCAAACTGGCTTAACGAGAAGTCAGGTATAAGGTTTTTCTGTCAGCATGTGTATTTTTGCATCTGAAACATTTTCCATTAGTCTTACTTTGGTGAATACATTTATCCTATTTTGAACCTACAGAACTCAGCCACATGGATTATTCCATACATGAGATTAACTTAAAGGATGGTCTGGAAACTGGAGCCAAATTTTTGTTCATGCAAAGAGTGTTTACACACATGTTTGAAACTTCACTTTTCTTACAATGATCACCATAAAGTGCTGAGTTTGTATAAAATCTTTAGGTGTTCGTTCGTTTATTCCGGCTGATGGATTACTGAAGATGAGTTCTAAAATTTTAAGTCAACTGGATCATGTGGTAGAGGGCTCCTTCCTGCATCAGTGCAGTAACACACAAAGTTCTTAAATTTGACTTTTGTGCACTGAACAAAGTCTATAGTTTCTTAAAGAAAAGTTCATTTGGTTCAAAAATAGCAGGCTTTTGCCAATCACAAAATCATATGCATTTGGTTCATTTGCGTTGATGGACGTTTGGTCGTGGCTCAATATTTCATTGATGAATGGGTGTCATGTTTCAGGTATCAAATTGGTTCATAAATGCACGAGTTCGTCTTTGGAAACCCATGGTTGAGGAAATGTACAAAGAAGAGGCTGGTGATGCTAAGATAGACTCAAATTCTTCATCAGAGGTTGCCCCCAGACTTGCATCAAAAGACTCAAAAGTTGAAGAAAGAGGAGAATTGCACCAGAATACAGCTTCAGAATTTGAGCAGTACAATAGTGGCCAAATCCTGGAGTCAAAATCTTACCATGAAGCTGATGCAGAAATGGAGGGAGCAAGTAATGCAGAAACTCAAAGTCAATCTGGAATGGAAAAT-CAAACAGAGGAACCCCTGCCTGCTATGGATAATTGCACCCT</genome_strand>
        <mrna_strand>CCACTAATTGATAGAAGGTACAGACAATATTATCATCAGATGCCAATAGTGGTCTCATCATTTGATGTAGTAGCTGGAGATGGAGCAGCAAAACCATACACAGCTCTTGCTCTTCAGACAATTTCCAGACACTTTCGTTGCTTGCGTGATGCAATCTGCGATCAGATTCGAGCATCACGAAGAAGTCTTGGAGAGCAAGATGCTTCAGAAAACAGCAAAGCGATTGGAATATCACGCCTGCGTTTTGTGGATCAGCATATTAGACAGCAGAGAGCCCTGCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCTCAGAGGGGATTGCCTGAAAGCTCTGTTTCAGTTTTGCGTGCTTGGCTCTTTGAGCACTTTCTTCATCC....................................................................................................................................CTACCCGAAAGATTCTGAAAAAATTATGCTAGCAAGGCAAACTGGCTTAACGAGAAGTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAAATTGGTTCATAAATGCACGAGTTCGTCTTTGGAAACCCATGGTTGAGGAAATGTACAAAGAAGAGGCTGGTGATGCTAAGATAGACTCAAATTCTTCATCAGAGGTTGCCCCCAGACTTGCATCAAAAGACTCAAAAGTTGAAGAAAGAGGAGAATTGCACCAGAATACAGCTTCAGAATTTGAGCAGTACAATAGTGGCCAAATCCTGGAGTCAAAATCTTACCATGAAGCTGATGCAGAAATGGAGGGAGCAAGTAATGCAGAAACTCAAAGTCAATCTGGAATGGAAAATCCAAACAGAGGAACCCCTGCCTGCTATGGATAATTGCACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241610" ref_strand="+" ref_description="SGN-E241610 [cLED-36-O3]">
      <seq>aaattgatactctattagagaatttggaattgagggaaggagtgaaggccaaattctacctgaatctgctgcagctgtgtgaaacaaaaggtgaaaaaatgttagtgtttagccaatacctcttgcctttgaaattcttggagaggttgactgttaagactaagggttacagtttggggaaggaactatttatgatcactggtgatacagacggggacatcagggagtcctcaatggagcgatttaacacttcaccggatgctcgtgttttctttggttcaattaaggcatgtggtgaaggaatatcacttgtccgggcatcgcggattatcatattggatgtgcatctcaacccatcagtaacccgtcaagcaatacgacgtgcattccgaccaggccaggagaggaaagtgtacacttacagattggtggcctcagattcacctgaggaggaagatcatacaacttgttttaaaaaggagtctattgcaaagttatggttcgagtggagtgagaattatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="89444" stop="88321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89144" g_stop="88621" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E241610" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89144" e_stop="88621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGATACTCTATTAGAGAATTTGGAATTGAGGGAAGGAGTGAAGGCCAAATTCTACCTGAATCTGCTGCAGCTGTGTGAAACAAAAGGTGAAAAAATGTTAGTGTTTAGCCAATACCTCTTGCCTTTGAAATTCTTGGAGAGGTTGACTGTTAAGACTAAGGGTTACAGTTTGGGGAAGGAACTATTTATGATCACTGGTGATACAGACGGGGACATCAGGGAGTCCTCAATGGAGCGATTTAACACTTCACCGGATGCTCGTGTTTTCTTTGGTTCAATTAAGGCATGTGGTGAAGGAATATCACTTGTCGGGGCATCGCGGATTATCATATTGGATGTGCATCTCAACCCATCAGTAACCCGTCAAGCAATAGGACGTGCATTCCGACCAGGCCAGGAGAGGAAAGTATACACTTACAGATTGGTGGCCTCAGATTCACCTGAGGAGGAAGATCATACAACTTGTTTTAAAAAGGAGTCTATTGCAAAGTTATGGTTCGAGTGGAGTGAGAATTATGCT</genome_strand>
        <mrna_strand>AAATTGATACTCTATTAGAGAATTTGGAATTGAGGGAAGGAGTGAAGGCCAAATTCTACCTGAATCTGCTGCAGCTGTGTGAAACAAAAGGTGAAAAAATGTTAGTGTTTAGCCAATACCTCTTGCCTTTGAAATTCTTGGAGAGGTTGACTGTTAAGACTAAGGGTTACAGTTTGGGGAAGGAACTATTTATGATCACTGGTGATACAGACGGGGACATCAGGGAGTCCTCAATGGAGCGATTTAACACTTCACCGGATGCTCGTGTTTTCTTTGGTTCAATTAAGGCATGTGGTGAAGGAATATCACTTGTCCGGGCATCGCGGATTATCATATTGGATGTGCATCTCAACCCATCAGTAACCCGTCAAGCAATACGACGTGCATTCCGACCAGGCCAGGAGAGGAAAGTGTACACTTACAGATTGGTGGCCTCAGATTCACCTGAGGAGGAAGATCATACAACTTGTTTTAAAAAGGAGTCTATTGCAAAGTTATGGTTCGAGTGGAGTGAGAATTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255718" ref_strand="+" ref_description="SGN-E255718 [cLEG-36-F19]">
      <seq>tgacaatgttggtagtgcgactgcagctgcttgtcaagagattctgctgaagtgcccgtcaattctcattcttgatgaaggtcacactccgcgcaaccaagacactgatgttttgacttcacttgagaaggtccagacacgcctgaaggtggtgctttctggcacattataccaaaatcatgttaaagaggtctttaacattctgaaccttgtgcgtccaaaatttctcaagctggaaacatccagaagcattaaaaggacaatcctaagcaaagtggcaagctcaaatagaaggaacctcctgaagaaaagtagtgacaatgatttttatgagctcgtgtagcatacacttttaaaggatgacaatttctcaaggaagagtgctgtcatactaggtctgcgtaaaatgaccgaaaaagtgcttcattattacaagggagatttcctcgaagaacttccaggtttggtggattacactgtccttctaaagctccatcctaagcagaaaagtgaagttgcagagctgaaaaaactgggaagaaagttcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="90085" stop="88934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89785" g_stop="89234" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E255718" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89785" e_stop="89234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAATGTTGGTAGTGCGACTGCAGCTGCTTGTCAGGAGATTCTGCTGAAGTGCCCGTCAATTCTCATTCTTGATGAAGGTCACACTCCGCGCAACCAAGACACTGATGTTTTGACTTCACTTGAGAAGGTCCAGACACGCCTGAAGGTGGTGCTTTCTGGCACATTATACCAAAATCATGTTAAAGAGGTCTTTAACATTCTGAACCTTGTGCGTCCAAAATTTCTCAAGCTGGAAACATCCAGAAGCATTAAAAGGACAATCCTAAGCAAAGTGGCAAGCTCAAATAGAAGGAACCTCCTGAAGAAAAGTAGTGACAATGATTTTTATGAGCTCGTGGAGCATACACTTTTAAAGGATGACAATTTCTCAAGGAAGAGTGCTGTCATACTAGGTCTGCGTAAAATGACCGAAAAAGTGCTTCATTATTACAAGGGAGATTTCCTCGAAGAACTTCCAGGTTTGGTGGATTACACTGTCCTTCTAAAGCTCCATCCTAAGCAGAAAAGTGAAGTTGCAGAGCTGAAAAAACTGGGAAGAAAGTTCAAAAT</genome_strand>
        <mrna_strand>TGACAATGTTGGTAGTGCGACTGCAGCTGCTTGTCAAGAGATTCTGCTGAAGTGCCCGTCAATTCTCATTCTTGATGAAGGTCACACTCCGCGCAACCAAGACACTGATGTTTTGACTTCACTTGAGAAGGTCCAGACACGCCTGAAGGTGGTGCTTTCTGGCACATTATACCAAAATCATGTTAAAGAGGTCTTTAACATTCTGAACCTTGTGCGTCCAAAATTTCTCAAGCTGGAAACATCCAGAAGCATTAAAAGGACAATCCTAAGCAAAGTGGCAAGCTCAAATAGAAGGAACCTCCTGAAGAAAAGTAGTGACAATGATTTTTATGAGCTCGTGTAGCATACACTTTTAAAGGATGACAATTTCTCAAGGAAGAGTGCTGTCATACTAGGTCTGCGTAAAATGACCGAAAAAGTGCTTCATTATTACAAGGGAGATTTCCTCGAAGAACTTCCAGGTTTGGTGGATTACACTGTCCTTCTAAAGCTCCATCCTAAGCAGAAAAGTGAAGTTGCAGAGCTGAAAAAACTGGGAAGAAAGTTCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327209" ref_strand="+" ref_description="SGN-E327209 [cTOC-19-E5]">
      <seq>aaccatcatagaatttcagtattccaaggccgccaggagtacaagaacatatcactatgaaggtcggtcggtaaaggatatacggcctactgaactccttcctgatggcatcattccatctgatgacattgatatgacggaaatttgtgttcatccaagacataggaaacaaatgaaatctcaccaaggtgagggaattaattttcttggtagcaacttgttgagagataaaggaggctgtatcatggctcatgcccctggatatggcaagactttcatgaaaatcagcttcctacaaagcttcatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="91155" stop="89705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90855" g_stop="90828" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90827" i_stop="90286" i_length="542">
            <donor d_prob="0.624" d_score="0.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90285" g_stop="90005" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="309" r_length="281" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E327209" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90855" e_stop="90828"/>
          <exon e_start="90285" e_stop="90005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATCATAGAATTTCAGTATTCGAAGGTCTGGCTGTCATTCCTAGATCATCTTTTGCTTTGGATCTTGTTCTTTACACCTTTTAGAAGCATGGAAAAAAATCAGTGCATTGATCATGATTATTCTGTGTTAACTGTTTGATTGCTAATCATCTGAACTGCTTTTGACTGATATTATGTTGTGTAACATCTGTCATTTGGTGTCACCTAGTTTGTTGTCGTCTTCATTGTCCAAGCAGTGCACATTTTTTCGTATTCCAGTCACTAGAAAATGGAACTTTTTATATTTTTAGAAAACTACAACATCAGAAGGAAATGAATGATGATTTTGTTACTAAAGTAGAAATTGTATGGCCTCTTTCACAAATGATATGGGTGTTGAACAAGAATTTTCTGGGAAGTGGTTAAGTTATCAAAAGATTTGATTAGCTCATTGTTGTGACCCTGTCTTAACAACTCTTGAGGTAACATTTTGGGCAGGTTTAGTACAAATCGTTGATTTAATTAGATGTCTTTTAGTCCAAGCATCTGGAATTTTTTTCAAGGCCTTAGTTTTGATTTTCTTAACAGGCCGCCAGGAGTACAAGAACATATCACTATGAAGGTCGGTCGGTAAAGGATATAGGGCCTACTGAACTCCTTCCTGATGGCATCATTCCATCTGATGACATTGATATGACGGAAATTTGTGTTCATCCAAGACATAGGAAACAAATGAAATCTCACCAAGTTGAGGGATTTAATTTTCTTGTTAGCAACTTGTTGAGAGATAAAGGAGGCTGTATCATGGCTCATGCCCCTGGATCTGGCAAGACTTTCATGATAATCAGCTTCCTACAAAGCTTCATGGC</genome_strand>
        <mrna_strand>AACCATCATAGAATTTCAGTATTCCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCAGGAGTACAAGAACATATCACTATGAAGGTCGGTCGGTAAAGGATATACGGCCTACTGAACTCCTTCCTGATGGCATCATTCCATCTGATGACATTGATATGACGGAAATTTGTGTTCATCCAAGACATAGGAAACAAATGAAATCTCACCAAGGTGAGGGAATTAATTTTCTTGGTAGCAACTTGTTGAGAGATAAAGGAGGCTGTATCATGGCTCATGCCCCTGGATATGGCAAGACTTTCATGAAAATCAGCTTCCTACAAAGCTTCATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577741" ref_strand="+" ref_description="SGN-E577741 [LE15CF01]">
      <seq>gagaatagtcgacggcaccattttgagccaagtgccaacgccttctgtcacctgcaaatctcacctatttttcttcatcagtctcgctctaccagtaactctttagtgaaaatggacttagcaacggaaggatggcggaacaattttgctaaaccaatggttaaaagggctcaggcgtacagccccagagatttgtttcccaaggggataaaaaagatgaaatttgatgaaagtaaaaaccagagtagtcctactgcatctgccactaggtggcgggaagaatgcgaacatggaaaagaaaaggggtcttcaagagttgccaaccgctccgaaacttttgcaattccacacttgctcaaagtgttacatttccgctaatttggaagtgttaccagatagatcgcggaccttattatgcggcaaatgaaggcagtgaactcttgttatgcaagtgacccttctcttcccaaccagagtcttggaatgggaaaggaaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="-" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="96247" stop="93599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95947" g_stop="95843" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95842" i_stop="95486" i_length="357">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95485" g_stop="95402" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="190" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95401" i_stop="94207" i_length="1195">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94206" g_stop="93899" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="499" r_length="309" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="-" ref_id="SGN-E577741" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95947" e_stop="95843"/>
          <exon e_start="95485" e_stop="95402"/>
          <exon e_start="94206" e_stop="93899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATAGTCGACGGCACCATTTTCAGCCAAGTGCCAACGCCTTCTGTCACCTGCAAATCTCACCTATTTTTCTTCATCAGTCT-GCTCTACCAGTAACTCTTCAGGTTTGTTCAAAATTGTTTTCTTCAAATTGAAGCTTCATCCGCTACCTAACTTCTATCTGAATCAGATTCTCTTTCTGTAAAACCCCCCTTTTTTTTTTCTACGACTATTTTTCTCCAAAATCCCCATAAGTTCATTTTTCGCTTCAAATTTTATTCATCGCTGTGTTTTACAAACAGTGAGTGGTTTTTCTTTAGTAAAAGTAAATTTTACTGATGGGTTGTGATGGGGTTTTGATCATGCGTCCATTGGTACCGATGAGGATGTCCTGTGTTGATATTTTGTCATGCATGTGTGTTTTCAGTTAGAAATTATTAGCTACATTGTGTTGATCTTTTGTCTTTTTTGTTGAATTAAAGTGAAAATGGACTTAGCAACGGAAGGATGGCGGAACAATTTTGCTAAACCAATGGCGAAAAGGGCTCAGCCGTACAGCCCCAGAGGTAGATTCCCCTATTTTTTCCCCTCTGAATACCCATACTATCAATTATACACACATGTGTAAGAGGGTTTTTCTATGTACTCACTATGTGGCATCAATCATGTATCAGGCCCATATTAGTTGGGTCGACCATACGAATGGTCCCTGTTTAGGTCTATGTTCAATTGATTATTCATTTTAATTTAGCTACTTTTACACTGGTCATCAACTCACCACAACCCTGTCATTTAGCTGGACCAAAGGCAAGATCTATGGTTATGTTACATAGATAGGGACTCCATTACAACAACATCAACATCATCATACCCAGTGAAGATAGAGACTCCATTAAGAGTACATAATGTGACTTAGTTTTTAGGTTGAGTTTAGTGGAGAAATCAAGTAATACTCCTTCCATCCCAATTTTATAACTTAATTTTGACATGACATGATTAGTAGGAAAGAACTCGAAAACAAGAATTGTTCGATTTGGAGTATTTGTTATGGGTTTGTGCTATGTTGCTCGGACTCGGCAAAAATGCTACCACACTTGTCTTGGATCCTCCAAAAATGCACTACTTTTGAAGGGCGTGACACATTTTTGGAGGATACAACAGACACCCAGTGACATTTTTAAAGAGTACAAGCAACATAGGTTTTGTGCACCAAATGTTGACTTGTCTTCTGGGAGCATAATGGAGGTTAAATTATATTCTTCATTTGTTTTGATTGAATATCTTAAATTTGACTTTACCTAGAGGTTGAATGAGGAGTTCAACATTTGAATTATTTGTATTTGTTGAGCAAATGAGAGAGAAATAGGTGTATGGAGAAGATAAAGTGGATATCATGCGGTGTTTTAAGTTCTCTTTACAAAGTGGATACTTATTTTTGAATAAGCTAGAAGATGTGGATGTTTAAATCGAAATGAAAGAGTAAGAAATAGTACTGTGCACCCCACTTAACTTTTATTAGTTAAAAAACACATTGAAATCATCCTTTTAAAAAGGTTGATTTCATATTGGCACGATGCTAAAAGGAATATAGTACAATACAAAAAGTAGAATAGCTACAACAACAAAGTCTGTGCAATCCCACAAGTGGAGTATGGGGAGGGTAGGATGTACGCAGTCCTTACCCTTACCTTGTCATATATTCCATTGTCATCTTGTCTACTATTCTCGTGCCTTGTGATTGAACTTTTATTTGTGGAACAGATTTGTTTTCCAAGGGGATAAAAAAGATGAAATTTGATGAAAGTAAAAACCAGAGTAGTCCTACTGCAGCTGCCACTAGTTGGCGGGAAGAATGCGAACATGGAAAAGAAAAGGGGTCTTCAAGAGTTGCCAACCGCTCCGAAACTTTTGCAATTCCAGACTTGCTCAAAGTGTTAGATTCCGGCAAATTTGGAAGTGTCACCAGAGAGATTGAGGACCTTATTATGCGGCGAATGAAGGCAGTGAACTCTTGTTATGCAAGTGACCCTTCTCTTCCCAA-CAAAGTCTTGGAATGGGAAAGGAACCAT</genome_strand>
        <mrna_strand>GAGAATAGTCGACGGCACCATTTTGAGCCAAGTGCCAACGCCTTCTGTCACCTGCAAATCTCACCTATTTTTCTTCATCAGTCTCGCTCTACCAGTAACTCTTTAG.....................................................................................................................................................................................................................................................................................................................................................................TGAAAATGGACTTAGCAACGGAAGGATGGCGGAACAATTTTGCTAAACCAATGGTTAAAAGGGCTCAGGCGTACAGCCCCAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTTTCCCAAGGGGATAAAAAAGATGAAATTTGATGAAAGTAAAAACCAGAGTAGTCCTACTGCATCTGCCACTAGGTGGCGGGAAGAATGCGAACATGGAAAAGAAAAGGGGTCTTCAAGAGTTGCCAACCGCTCCGAAACTTTTGCAATTCCACACTTGCTCAAAGTGTTACATTTCCGCTAATTTGGAAGTGTTACCAGATAGATCGCGGACCTTATTATGCGGCAAATGAAGGCAGTGAACTCTTGTTATGCAAGTGACCCTTCTCTTCCCAACCAGAGTCTTGGAATGGGAAAGGAACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326911" ref_strand="+" ref_description="SGN-E326911 [cTOC-18-G22]">
      <seq>tcccaaataacttggttttctttttcactttggcgccctttccgctaaaatccctcaagattcctctcactgtttcacctctttctcgcttccgattcccattccccttgtacctttttctatgtagtcaactcatactgttttcataaagcataacttgtatctcttccgtatctatctctctttctcaaatggcttccgaggaacacttgtctgcaattaagggtgctaaagtgctcatggttggtgctggtggtattgggtgtgagttgcttaaaacccttgctctttctgggttcgaagacattcacataattgacatggatacaatagaagtcagtaacctaaatagacagttcttgtttcgacaaaaacatgttggtcaatctaaggctaaagttgctagagacgctgtcctaagatttaggcctcatattaaaattacaccataccatgcaaatgtaaaagatccagagttcaatgtggattttttcaagcaattcaatgttgtgcttaatggtcttgacaatctagatgctaggcgacatgtgaatcgcctttgtttggcatctggtgtcccattagttgaaagtgggactacaggcttccttggccaggtcacggtacatgtgaaaggtaaaacagaatgctatgaaatgtcatctaaaccagctccaaaaacttaccctgtctgtacaatcacaagcactccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="98448" stop="103389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98748" g_stop="98971" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98972" i_stop="99073" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99074" g_stop="99163" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="314" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99164" i_stop="101860" i_length="2697">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101861" g_stop="101944" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="398" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101945" i_stop="102030" i_length="86">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102031" g_stop="102249" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="617" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102250" i_stop="102991" i_length="742">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102992" g_stop="103089" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="715" r_length="98" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E326911" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98748" e_stop="98971"/>
          <exon e_start="99074" e_stop="99163"/>
          <exon e_start="101861" e_stop="101944"/>
          <exon e_start="102031" e_stop="102249"/>
          <exon e_start="102992" e_stop="103089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAAATAACTTGGTTTTCTTTTTCACTTTGGCGCCCTTTCCGCTAAAATCCCTCAAGATTCCTCTCACTGTTTCACCTCTTTCTCGCTTCCGATTCCCATTCCCCTTGTACCTTTTTCTATGTAGTCAACTCATACTGTTTTCATAAAGCATAACTTGTATCTCTTCCGTATCTATCTCTCTTTCTCAAATGGCTTCCGAGGAACACTTGTCTGCAATTAAGGTATGTATATGTATTTTCTTGATGTTTTGAGCACCCTTTCTTGGATAATATTGATGGGTTTTGTTAGTTCTTGATGCTCTTTTTTTTTTTATTATTTATTAGGGTGCTAAAGTGCTCATGGTTGGTGCTGGTGGTATTGGGTGTGAGTTGCTTAAAACCCTTGCTCTTTCTGGGTTCGAAGACATTCACATAGTAAGTAAGATTTGCCTTTTCTTTTTGATAGTTACTTTTTTTAATTATATTTTTGGTCAAGAAAATTTAGGGCTTCTTTGTTAGGGTTTCTTGATTATGTTACGTTGCCGTGGATTGTTAGGGTTTTTGTGAGTTGTTTCATTGTGGGATGTGCATGAGGAGGAAGTGTTGTTTTTGTACTGGGGTGACCTAGTGAGAAGCTTTCATCTTGGACCTTGTATATATGTGAAAATTCATTAAAAATTGGTATATATTAAGAGAACCTGACCGAAAACTTCAAGAGAAGTTGCTGCATTTGACATTTTTTACAAAAGATTGTTAAAAGTTTGAGCCCAATGGGACCCTCCCTGTGATTCTATATATGCACCGCGTAGAAAGATTTACTATGGGGTTAGCAAACATCTTTCTTTGTTCGATTAGTGACTAGCACAGTTTTCATGCTTTCTAAGCAAATTGATATAGTAATATAAGAGAGGAATAAACTTCACATCCTAAATAAGATTTGCTGATATTTACTGTTTAAAAGTCGTCTTTGATGATTAAATTTTTGGTCAACAAAATTTATGGCAGCTTTGCTAGGGTTTCTTGAATACGTTTAGTTTGCCTTGTGATTGTTAGGATTTTTGCGAGTTATTCCTTTGCGGGCTGTGCATGAGGAGAAAGTGTGGTTTTTGCACTGGGGCATACCAAGTGAAAAACTTTGGCTAGGACCTTGTATATATATGAAAATCCATTAGAATTGGTATGCATTTAGAGAACCTGACCAACTGCTTCAAGAAAGCAGTTGCTGCATTTAATATTTACTCCTCAAGATTATTAGAAATCTGAACCCAATTATACCCTCCCTGGGATTCTATATTTGCATAATTCATTGGTTATGATTGTCATGGGTTGGGAATGAAGGGACATGCTTACAGCAATCCTGGTGGCACTGTGTAGAGAGATTTACTATGTGGTTAGCAAACATCTCTCTTTGTTGGCTTATTAACTAGCACAGTTTTCATGCTTTCTAAGCAAATCAATATAGTAATAAAAGAGACAAATAAACTTCACTTCGCAAGTAAATTTGCCTTTTTTTTTAATATATATATATTTACTGTTTCTAAGTAGTTTGTGATGATTAGATTTTGGGTCAAGAAAATTTAGGGCTATTTGCTAGGTTTTCCTGTATATGTTTAGTTGCCTTGTCTTGTGATCGTTAGGGTTTTTGTGATCTATTCCAATGCGGGGTGCATGAGGAGAAAGTGTTGTTTCTGTGCCGGGGCTTACCCAGTGAAAAGCTTTGGCTATGACCTTGTACAGACATGAAAATCCATCAGAATTGGTATGTATTTAGAGAACCTGACGAACTTCTTCAAGAGAGAATTTGCTGCATTTGACATTTCCTCCTCAAGATTATTAGAAATTTGAACCCAATGGTACCCTCCTAGGAGTCTATATTTGCATAATCATTGGTTATGGTTATCATGGTTTGAGAATGAAGGGACATGCTTGTGAAAGTTACAGGATAGCCTTAGTTACGTGAGCAATCCCGTCGGCAGTGTTTAGAGAGATTTACTATTTGGTTAGCAAGCATCTCTCCTTGTTGGATTATTAACTAGCACATTCTTCATGCCTTATAAGCAAATTGATATTACAAAAAAGGCGACAACAATTTGATTTAGCTCATCAAATGACACTGCTGTCTCTAAGAAGGCTCATTCTAGAGCATAGCTAGAACCTTTGTTTCCTGACTCTCAAGGTATTCTTTTACAGTAGTAATATTATTAAGGAAGCTGATTCTCCTTACTAATATGCGACTGGAAGAATATCAGGAAGTTGGTTCGAATTTAAACTACAATAAGTAGCCTTTATTCAAACAAAGGGAACCGAAGGTATCCTTGTTTAGTAATACGAAAATAGTTAGCTTTAACTTTATCAAAAAAAAAAGTAATACGAAAATAGTTCTACTATTAAGATGTTTAATAATACTGTTGTAGCTGTGCCTATCTTAGCTTGAATATATATGGCTACAGCTTGCATTGGATTCCTAGAGTTTTAATAGCTGTTAGAAATATATGCAAGCAATCTGATCATCTTTGGTCTGCAAATAGGAAAGAGTTTGCCCTTATGTTTTTTATACATGATTTCTGTTGCTAGAAAGGAAAACTTCTAGTGTACCCAGTTGCAGGTCATACACTATATCTTGCACACGAGATAGAAAAGTAAGAGTTCGGAGAGTTATGGGTGCAACCTTGTATGTTGACATTTACAAGACTCGAGGCTTGCTTGAGTGAGATTCCACTATGCTGCTCGGTAGGTTGTGGAAGGCTGCTGATTGCAGATGAGAAAAAAATAGAATCCCTGCATATCAGGCCAAGAGAAGAGGGGGTGGGGTGGGTGTAGGTGCTCTGACTTTTAGGGGTAGACTCTACCACTTATCTTTTATCATTCCATTGCTCTCAGGCTATTCAAATGTACATTTCTATTCTGCAAAAGGATGAGAGGGCTTCTGCACTGTGTGGTGGTGGTGGTGGTGGGGTCTGCCTCATCTTATTTTGATTCGCATGTCACTGTCCTGTTTCCTTGTGGATTAGTATAAGTTTACTCAGTAAATGCTTTTTAAAACAGTCTTGTCATTTATATTATGTGAGTCCATTGTATAATGCTTGCATAGAGCTTTCTAACATGGTTTTATGCCATTTTGCCTATTTGCAGATTGACATGGATACAATAGAAGTCAGTAACCTAAATAGACAGTTCTTGTTTCGACAAAAACATGTTGGTCAATCTAAGGCTAAAGTAAGGAAATCACATCAATATTTTTCGGGTTTCATTTTTCATGCCGATTTTGAATCCTTAATAGCGTTCTTTCAAAATTTTACCAGGTTGCTAGAGACGCTGTCCTAAGATTTAGGCCTCATATTAAAATTACACCATACCATGCAAATGTAAAAGATCCAGAGTTCAATGTGGATTTTTTCAAGCAATTCAATGTTGTGCTTAATGGTCTTGACAATCTAGATGCTAGGCGACATGTGAATCGCCTTTGTTTGGCATCTGGTGTCCCATTAGTTGAAAGTGGGACTACAGGCTTCCTTGGCCAGGTAAGAATTAGTCTTTCAGTTTTATTTGATGGGGATCAGGCAACTAAATTTCATTTGGCATACTTCTGTTTCTATCTTATATATTTGCTAGTCTGTATATTTCTTGACATCTTAAGATCTCTTAGCAACATTCAGACTAGCCATGACCAGCCTAAAATGTTATAAATGAAGTTACTTTTAATGCAATTAAAGAAAATGTGAAAAATCCATATTTCTTGAATGTGGTATTCTTGGGTCATAGACTGTTGTAGTTATCAAGAGTTTTGTTTCAGAAACTTATTGAATATGCATGTTGATTATTGTTGCACTGTTACAGCCAGTAAATTTTGATTCCTTTCTTGGAATATTCGCTGCTTGGGTGAAGTTAGCCACATATTTGATCAGATTATATGTCTTATTCAAAATAACTCTTGCAAAAGCTTGCTCTTCATGCTAACAAGTTTCTCATTCACCTCATTCTTTTGAAGGATGGAGCAATTTTCAGCTTTTATGTTTGATTCAAACCTTTTAGCCAATAGGTCAACCTATTTATGCACCCTCAAAGATCATAGCGGAAATACATAGTCCTGTAGCTTTATATGTGTTTTTAAGGTCAAACGTTCTTGTTTGGCTGCTCTTTTTTTGGATTTTGGTCCATAGTGTATTACTGTGTTCTGCTGTTTCTGTTTATCAACTGACAGAATATCCTTGTTGACTCTTACTAGTTCTGTGATTCTCATCATCGTATCTTTTTTTGTGGCAGGTCACGGTACATGTGAAAGGTAAAACAGAATGCTATG-AATGTCAATCTAAACCAGCTCCAAAAACTTACCCTGTCTGTACAATCACAAGCACTCCAAC</genome_strand>
        <mrna_strand>TCCCAAATAACTTGGTTTTCTTTTTCACTTTGGCGCCCTTTCCGCTAAAATCCCTCAAGATTCCTCTCACTGTTTCACCTCTTTCTCGCTTCCGATTCCCATTCCCCTTGTACCTTTTTCTATGTAGTCAACTCATACTGTTTTCATAAAGCATAACTTGTATCTCTTCCGTATCTATCTCTCTTTCTCAAATGGCTTCCGAGGAACACTTGTCTGCAATTAAG......................................................................................................GGTGCTAAAGTGCTCATGGTTGGTGCTGGTGGTATTGGGTGTGAGTTGCTTAAAACCCTTGCTCTTTCTGGGTTCGAAGACATTCACATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACATGGATACAATAGAAGTCAGTAACCTAAATAGACAGTTCTTGTTTCGACAAAAACATGTTGGTCAATCTAAGGCTAAA......................................................................................GTTGCTAGAGACGCTGTCCTAAGATTTAGGCCTCATATTAAAATTACACCATACCATGCAAATGTAAAAGATCCAGAGTTCAATGTGGATTTTTTCAAGCAATTCAATGTTGTGCTTAATGGTCTTGACAATCTAGATGCTAGGCGACATGTGAATCGCCTTTGTTTGGCATCTGGTGTCCCATTAGTTGAAAGTGGGACTACAGGCTTCCTTGGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGGTACATGTGAAAGGTAAAACAGAATGCTATGAAATGTC-ATCTAAACCAGCTCCAAAAACTTACCCTGTCTGTACAATCACAAGCACTCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317769" ref_strand="+" ref_description="SGN-E317769 [cTOA-30-C4]">
      <seq>tctttttcactttggcgccctttccgctaaaatccctcaagattcctctcactgtttcacctctttctcgcttccgattcccattccccttgtacctttttctatgtagtcaactcatactgttttcataaagcataacttgtatctcttccgtatctatctctctttctcaaatggcttccgaggaacacttgtctgcaattaagggtgctaaagtgctcatggttggtgctggtggtattgggtgtgagttgcttaaaacccttgctctttctgggttcgaagacattcacataattgacatggatacaatagaagtcagtaacctaaatagacagttcttgtttcgacaaaaacatgttggtcaatctaaggctaaagttgctagagacgctgtcctaagatttaggcctcatattaaaattacaccataccatgcaaatgtaaaagatccagagttcaatgtggattttttcaagcaattcaatgttgtgcttaatggtcttgacaatctagatgctangcgacatgtgaatcgcctttgtttggcatctggtgtcccattagttgaaagtgggactacaggcttccttggccaggtcacggtacatgtgaaaaggtaaaaagaatgctatgaatgtcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="98466" stop="103339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98766" g_stop="98971" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98972" i_stop="99073" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99074" g_stop="99163" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="296" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99164" i_stop="101860" i_length="2697">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101861" g_stop="101944" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="380" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101945" i_stop="102030" i_length="86">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102031" g_stop="102249" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="599" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102250" i_stop="102991" i_length="742">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102992" g_stop="103039" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="647" r_length="48" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E317769" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98766" e_stop="98971"/>
          <exon e_start="99074" e_stop="99163"/>
          <exon e_start="101861" e_stop="101944"/>
          <exon e_start="102031" e_stop="102249"/>
          <exon e_start="102992" e_stop="103039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCACTTTGGCGCCCTTTCCGCTAAAATCCCTCAAGATTCCTCTCACTGTTTCACCTCTTTCTCGCTTCCGATTCCCATTCCCCTTGTACCTTTTTCTATGTAGTCAACTCATACTGTTTTCATAAAGCATAACTTGTATCTCTTCCGTATCTATCTCTCTTTCTCAAATGGCTTCCGAGGAACACTTGTCTGCAATTAAGGTATGTATATGTATTTTCTTGATGTTTTGAGCACCCTTTCTTGGATAATATTGATGGGTTTTGTTAGTTCTTGATGCTCTTTTTTTTTTTATTATTTATTAGGGTGCTAAAGTGCTCATGGTTGGTGCTGGTGGTATTGGGTGTGAGTTGCTTAAAACCCTTGCTCTTTCTGGGTTCGAAGACATTCACATAGTAAGTAAGATTTGCCTTTTCTTTTTGATAGTTACTTTTTTTAATTATATTTTTGGTCAAGAAAATTTAGGGCTTCTTTGTTAGGGTTTCTTGATTATGTTACGTTGCCGTGGATTGTTAGGGTTTTTGTGAGTTGTTTCATTGTGGGATGTGCATGAGGAGGAAGTGTTGTTTTTGTACTGGGGTGACCTAGTGAGAAGCTTTCATCTTGGACCTTGTATATATGTGAAAATTCATTAAAAATTGGTATATATTAAGAGAACCTGACCGAAAACTTCAAGAGAAGTTGCTGCATTTGACATTTTTTACAAAAGATTGTTAAAAGTTTGAGCCCAATGGGACCCTCCCTGTGATTCTATATATGCACCGCGTAGAAAGATTTACTATGGGGTTAGCAAACATCTTTCTTTGTTCGATTAGTGACTAGCACAGTTTTCATGCTTTCTAAGCAAATTGATATAGTAATATAAGAGAGGAATAAACTTCACATCCTAAATAAGATTTGCTGATATTTACTGTTTAAAAGTCGTCTTTGATGATTAAATTTTTGGTCAACAAAATTTATGGCAGCTTTGCTAGGGTTTCTTGAATACGTTTAGTTTGCCTTGTGATTGTTAGGATTTTTGCGAGTTATTCCTTTGCGGGCTGTGCATGAGGAGAAAGTGTGGTTTTTGCACTGGGGCATACCAAGTGAAAAACTTTGGCTAGGACCTTGTATATATATGAAAATCCATTAGAATTGGTATGCATTTAGAGAACCTGACCAACTGCTTCAAGAAAGCAGTTGCTGCATTTAATATTTACTCCTCAAGATTATTAGAAATCTGAACCCAATTATACCCTCCCTGGGATTCTATATTTGCATAATTCATTGGTTATGATTGTCATGGGTTGGGAATGAAGGGACATGCTTACAGCAATCCTGGTGGCACTGTGTAGAGAGATTTACTATGTGGTTAGCAAACATCTCTCTTTGTTGGCTTATTAACTAGCACAGTTTTCATGCTTTCTAAGCAAATCAATATAGTAATAAAAGAGACAAATAAACTTCACTTCGCAAGTAAATTTGCCTTTTTTTTTAATATATATATATTTACTGTTTCTAAGTAGTTTGTGATGATTAGATTTTGGGTCAAGAAAATTTAGGGCTATTTGCTAGGTTTTCCTGTATATGTTTAGTTGCCTTGTCTTGTGATCGTTAGGGTTTTTGTGATCTATTCCAATGCGGGGTGCATGAGGAGAAAGTGTTGTTTCTGTGCCGGGGCTTACCCAGTGAAAAGCTTTGGCTATGACCTTGTACAGACATGAAAATCCATCAGAATTGGTATGTATTTAGAGAACCTGACGAACTTCTTCAAGAGAGAATTTGCTGCATTTGACATTTCCTCCTCAAGATTATTAGAAATTTGAACCCAATGGTACCCTCCTAGGAGTCTATATTTGCATAATCATTGGTTATGGTTATCATGGTTTGAGAATGAAGGGACATGCTTGTGAAAGTTACAGGATAGCCTTAGTTACGTGAGCAATCCCGTCGGCAGTGTTTAGAGAGATTTACTATTTGGTTAGCAAGCATCTCTCCTTGTTGGATTATTAACTAGCACATTCTTCATGCCTTATAAGCAAATTGATATTACAAAAAAGGCGACAACAATTTGATTTAGCTCATCAAATGACACTGCTGTCTCTAAGAAGGCTCATTCTAGAGCATAGCTAGAACCTTTGTTTCCTGACTCTCAAGGTATTCTTTTACAGTAGTAATATTATTAAGGAAGCTGATTCTCCTTACTAATATGCGACTGGAAGAATATCAGGAAGTTGGTTCGAATTTAAACTACAATAAGTAGCCTTTATTCAAACAAAGGGAACCGAAGGTATCCTTGTTTAGTAATACGAAAATAGTTAGCTTTAACTTTATCAAAAAAAAAAGTAATACGAAAATAGTTCTACTATTAAGATGTTTAATAATACTGTTGTAGCTGTGCCTATCTTAGCTTGAATATATATGGCTACAGCTTGCATTGGATTCCTAGAGTTTTAATAGCTGTTAGAAATATATGCAAGCAATCTGATCATCTTTGGTCTGCAAATAGGAAAGAGTTTGCCCTTATGTTTTTTATACATGATTTCTGTTGCTAGAAAGGAAAACTTCTAGTGTACCCAGTTGCAGGTCATACACTATATCTTGCACACGAGATAGAAAAGTAAGAGTTCGGAGAGTTATGGGTGCAACCTTGTATGTTGACATTTACAAGACTCGAGGCTTGCTTGAGTGAGATTCCACTATGCTGCTCGGTAGGTTGTGGAAGGCTGCTGATTGCAGATGAGAAAAAAATAGAATCCCTGCATATCAGGCCAAGAGAAGAGGGGGTGGGGTGGGTGTAGGTGCTCTGACTTTTAGGGGTAGACTCTACCACTTATCTTTTATCATTCCATTGCTCTCAGGCTATTCAAATGTACATTTCTATTCTGCAAAAGGATGAGAGGGCTTCTGCACTGTGTGGTGGTGGTGGTGGTGGGGTCTGCCTCATCTTATTTTGATTCGCATGTCACTGTCCTGTTTCCTTGTGGATTAGTATAAGTTTACTCAGTAAATGCTTTTTAAAACAGTCTTGTCATTTATATTATGTGAGTCCATTGTATAATGCTTGCATAGAGCTTTCTAACATGGTTTTATGCCATTTTGCCTATTTGCAGATTGACATGGATACAATAGAAGTCAGTAACCTAAATAGACAGTTCTTGTTTCGACAAAAACATGTTGGTCAATCTAAGGCTAAAGTAAGGAAATCACATCAATATTTTTCGGGTTTCATTTTTCATGCCGATTTTGAATCCTTAATAGCGTTCTTTCAAAATTTTACCAGGTTGCTAGAGACGCTGTCCTAAGATTTAGGCCTCATATTAAAATTACACCATACCATGCAAATGTAAAAGATCCAGAGTTCAATGTGGATTTTTTCAAGCAATTCAATGTTGTGCTTAATGGTCTTGACAATCTAGATGCTAGGCGACATGTGAATCGCCTTTGTTTGGCATCTGGTGTCCCATTAGTTGAAAGTGGGACTACAGGCTTCCTTGGCCAGGTAAGAATTAGTCTTTCAGTTTTATTTGATGGGGATCAGGCAACTAAATTTCATTTGGCATACTTCTGTTTCTATCTTATATATTTGCTAGTCTGTATATTTCTTGACATCTTAAGATCTCTTAGCAACATTCAGACTAGCCATGACCAGCCTAAAATGTTATAAATGAAGTTACTTTTAATGCAATTAAAGAAAATGTGAAAAATCCATATTTCTTGAATGTGGTATTCTTGGGTCATAGACTGTTGTAGTTATCAAGAGTTTTGTTTCAGAAACTTATTGAATATGCATGTTGATTATTGTTGCACTGTTACAGCCAGTAAATTTTGATTCCTTTCTTGGAATATTCGCTGCTTGGGTGAAGTTAGCCACATATTTGATCAGATTATATGTCTTATTCAAAATAACTCTTGCAAAAGCTTGCTCTTCATGCTAACAAGTTTCTCATTCACCTCATTCTTTTGAAGGATGGAGCAATTTTCAGCTTTTATGTTTGATTCAAACCTTTTAGCCAATAGGTCAACCTATTTATGCACCCTCAAAGATCATAGCGGAAATACATAGTCCTGTAGCTTTATATGTGTTTTTAAGGTCAAACGTTCTTGTTTGGCTGCTCTTTTTTTGGATTTTGGTCCATAGTGTATTACTGTGTTCTGCTGTTTCTGTTTATCAACTGACAGAATATCCTTGTTGACTCTTACTAGTTCTGTGATTCTCATCATCGTATCTTTTTTTGTGGCAGGTCACGGTACATGTGAAAGGTAAAACAGAATGCTATGAATGTCAATCT</genome_strand>
        <mrna_strand>TCTTTTTCACTTTGGCGCCCTTTCCGCTAAAATCCCTCAAGATTCCTCTCACTGTTTCACCTCTTTCTCGCTTCCGATTCCCATTCCCCTTGTACCTTTTTCTATGTAGTCAACTCATACTGTTTTCATAAAGCATAACTTGTATCTCTTCCGTATCTATCTCTCTTTCTCAAATGGCTTCCGAGGAACACTTGTCTGCAATTAAG......................................................................................................GGTGCTAAAGTGCTCATGGTTGGTGCTGGTGGTATTGGGTGTGAGTTGCTTAAAACCCTTGCTCTTTCTGGGTTCGAAGACATTCACATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACATGGATACAATAGAAGTCAGTAACCTAAATAGACAGTTCTTGTTTCGACAAAAACATGTTGGTCAATCTAAGGCTAAA......................................................................................GTTGCTAGAGACGCTGTCCTAAGATTTAGGCCTCATATTAAAATTACACCATACCATGCAAATGTAAAAGATCCAGAGTTCAATGTGGATTTTTTCAAGCAATTCAATGTTGTGCTTAATGGTCTTGACAATCTAGATGCTANGCGACATGTGAATCGCCTTTGTTTGGCATCTGGTGTCCCATTAGTTGAAAGTGGGACTACAGGCTTCCTTGGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGGTACATGTGAAAAGGTAAAAAGAATGCTATGAATGTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256028" ref_strand="+" ref_description="SGN-E256028 [cLEG-35-L21]">
      <seq>tggagtcttagggaaaattctgaagtatttctcgaggcattaaggctctttttctcgaaaagagagaaggaaattggccagttgggttttgataaggacgaccagttggctgtagagtttgtcacttctgcagcaaacattcgtgccgcttcttttggaattccattacatagcctttttgaagctaaaggtattgctggcaatattgttcatgccgttgcaacaacaaatgccatcattgcaggcttgattgtccttgaggcaatcaaggtgttgcaaaatgatgtaaaaagctacaggatgacttattgccttgaacatccgtcaagaaagatgcttctcatgccagtggagcccttcgagccaaacaagtcttgttatgtttgttccgagacacctttaacgcttgagattaatactcatcgttcgaagttgagggattttgttgacaagattgtcaaagaaaaacttggcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="103342" stop="105550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103642" g_stop="103710" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103711" i_stop="103897" i_length="187">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103898" g_stop="104127" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="299" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104128" i_stop="105135" i_length="1008">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105136" g_stop="105229" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="393" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105230" i_stop="105331" i_length="102">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105332" g_stop="105417" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="479" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E256028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103642" e_stop="103710"/>
          <exon e_start="103898" e_stop="104127"/>
          <exon e_start="105136" e_stop="105229"/>
          <exon e_start="105332" e_stop="105417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTCTTAGGGAAAATTCTGAAGTATTTCTCGAGGCATTAAGGCTCTTTTTCTCGAAAAGAGAGAAGGTTTTGACCCCATTACCACATTCTGATTCTTTTTTTTGATAAAGTAATCTAATTTTATTGGAAGAAGGAAAAAATGCCATTTTATTTGATACCATTCCCACCTCCTGAATCTTTTTCTTGTATATATGCTTGGGTTTCTTTTTCATTTAGTCTGTTCAAATTATTTCTGTCTTTACCACTGTTGCAGGAAATTGGCCAGTTGGGTTTTGATAAGGACGACCAGTTGGCTGTAGAGTTTGTCACTTCTGCAGCAAACATTCGTGCCGCTTCTTTTGGAATTCCATTACATAGCCTTTTTGAAGCTAAAGGTATTGCTGGCAATATTGTTCATGCCGTTGCAACAACAAATGCCATCATTGCAGGCTTGATTGTCCTTGAGGCAATCAAGGTGTTGCAAAATGATGTAAAAAGCTACAGGTATGGTTGATTCCATTATTTCTGCTTTTACGGCAGTTCTCTTTATTTCGAATCAGATAATTATATTTTGGAGATCAGCTAAAATGATCAAGATATCAGATACTCTTGCCAGTTGTGACTGATCTCCACATGCTTTTATAAAAGCAATCTCTACAATGCTTCCAGTCCCAACTATTGTCTGATTGAGGATAAGTTAATTAATCACATACTTGATTAATCACTATGGAAATAGTGCACCAAGTCAAATTAATATCTAATAGATGTTTTGCACTAAAGGATGTGACATAATGGTCAATGGAGTTGGTGCAAACTTTGGAGACTAAGATTCATCCTAATAGAGACAAACCACATCAAGTGATTTCTCTCCGCCTGTCTTAGCCTTGGTGAGCAAAGCTACCCAATACTTGTGTTGATGGAAGGTAGCAGGTATACATATACTAGTCAAGGTGTGCACCAGCTGGCCTGGATGCCATGTTAAAAATAACTAATTGAATTAGCTAAAATATACGAACTAAATAAAACTAATTGCACTTTTTAGCAAATGGTGAAACCGTAGAATAGAAAACTGAAAAGGTACCTTTTTGAAGTGTCGTTCAATGCATGCCATCCTGTTTTTCCTTATGCCAACCTTCCCCCCTTCCCATTTAGAAAAAGCAAAATTTAGCAACCTTTCAATGCCTTGTAAAAGCTCAAAGTAGGAAAGCGATCAAAAACTTGGGAAACAACTTACCATTTATCTGTTACCATTTTTTCAAAAAACAACTTACCATTTACTGCAAGGAGTTACTAAAAATGGATTTTACCTAATGTTTCTCCAGACTTATACTCAACCCTTCTTTTACTTTATGTTATTGGAACAAAATAAAAACAACATTCCAAAAACTAATGTATCAAGTACTTGAGCTTTGAGGACTTCTTGTGCTGTATGGAAGTGTGGTACATGGAACAATGAGGATTATGTCATTTTGTTCGGTACTGTTTTATAATATCATGTGCACTTCCGTGCAGGATGACTTATTGCCTTGAACATCCGTCAAGAAAGATGCTTCTCATGCCAGTGGAGCCCTTCGAGCCAAACAAGTCTTGTTATGTTTGTTCCGAGGTATGATCTACAGTAATGTACAATAGATTGTGTTCCCGCCTGTGCTACCTTATGGAATTTTATTTGTCACTACTTTTTGATTTAATGCAAATCAATGAACAGACACCTTTAACGCTTGAGATTAATACTCATCGTTCGAAGTTGAGGGATTTTGTTGACAAGATTGTCAAAGAAAAACTTGGCATGAG</genome_strand>
        <mrna_strand>TGGAGTCTTAGGGAAAATTCTGAAGTATTTCTCGAGGCATTAAGGCTCTTTTTCTCGAAAAGAGAGAAG...........................................................................................................................................................................................GAAATTGGCCAGTTGGGTTTTGATAAGGACGACCAGTTGGCTGTAGAGTTTGTCACTTCTGCAGCAAACATTCGTGCCGCTTCTTTTGGAATTCCATTACATAGCCTTTTTGAAGCTAAAGGTATTGCTGGCAATATTGTTCATGCCGTTGCAACAACAAATGCCATCATTGCAGGCTTGATTGTCCTTGAGGCAATCAAGGTGTTGCAAAATGATGTAAAAAGCTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTTATTGCCTTGAACATCCGTCAAGAAAGATGCTTCTCATGCCAGTGGAGCCCTTCGAGCCAAACAAGTCTTGTTATGTTTGTTCCGAG......................................................................................................ACACCTTTAACGCTTGAGATTAATACTCATCGTTCGAAGTTGAGGGATTTTGTTGACAAGATTGTCAAAGAAAAACTTGGCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276151" ref_strand="+" ref_description="SGN-E276151 [cLEN-21-C9]">
      <seq>aaattctgaagtatttctcgaggcattaaggctctttttctcgaaaagagagaaggaaattggccagttgggttttgataaggacgaccagttggctgtagagtttgtcacttctgcagcaaacattcgtgccgcttcttttggaattccattacatagcctttttgaagctaaaggtattgctggcaatattgttcatgccgttgcaacaacaaatgccatcattgcaggcttgattgtccttgaggcaatcaaggtgttgcaaaatgatgtaaaaagctacaggatgacttattgccttgaacatccgtcaagaaagatgcttctcatgccagtggagcccttcgagccaaacaagtcttgttatgtttgttccgagacacctttaacgcttgagattaatactcatcgttcgaagttgagggattttgttgacaagattgtcaaagaaaaacttggcatgagcctcccattgatcatgcatggggtggcacttctttatgaggtgggcgatgatcttgaggaagatgaggttgcaaattatgcagcaaaccttgacaaggttctatctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0131F15-8RaTJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0131F15.1" temp_strand="+" temp_description="C01HBa0131F15.1  AC238909.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0131F15 upload_account_name:manual">
        <position start="103356" stop="105550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103656" g_stop="103710" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103711" i_stop="103897" i_length="187">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103898" g_stop="104127" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="285" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104128" i_stop="105135" i_length="1008">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105136" g_stop="105229" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="379" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105230" i_stop="105331" i_length="102">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105332" g_stop="105527" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="574" r_length="195" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0131F15.1" gen_strand="+" ref_id="SGN-E276151" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0131F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103656" e_stop="103710"/>
          <exon e_start="103898" e_stop="104127"/>
          <exon e_start="105136" e_stop="105229"/>
          <exon e_start="105332" e_stop="105527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTGAAGTATTTCTCGAGGCATTAAGGCTCTTTTTCTCGAAAAGAGAGAAGGTTTTGACCCCATTACCACATTCTGATTCTTTTTTTTGATAAAGTAATCTAATTTTATTGGAAGAAGGAAAAAATGCCATTTTATTTGATACCATTCCCACCTCCTGAATCTTTTTCTTGTATATATGCTTGGGTTTCTTTTTCATTTAGTCTGTTCAAATTATTTCTGTCTTTACCACTGTTGCAGGAAATTGGCCAGTTGGGTTTTGATAAGGACGACCAGTTGGCTGTAGAGTTTGTCACTTCTGCAGCAAACATTCGTGCCGCTTCTTTTGGAATTCCATTACATAGCCTTTTTGAAGCTAAAGGTATTGCTGGCAATATTGTTCATGCCGTTGCAACAACAAATGCCATCATTGCAGGCTTGATTGTCCTTGAGGCAATCAAGGTGTTGCAAAATGATGTAAAAAGCTACAGGTATGGTTGATTCCATTATTTCTGCTTTTACGGCAGTTCTCTTTATTTCGAATCAGATAATTATATTTTGGAGATCAGCTAAAATGATCAAGATATCAGATACTCTTGCCAGTTGTGACTGATCTCCACATGCTTTTATAAAAGCAATCTCTACAATGCTTCCAGTCCCAACTATTGTCTGATTGAGGATAAGTTAATTAATCACATACTTGATTAATCACTATGGAAATAGTGCACCAAGTCAAATTAATATCTAATAGATGTTTTGCACTAAAGGATGTGACATAATGGTCAATGGAGTTGGTGCAAACTTTGGAGACTAAGATTCATCCTAATAGAGACAAACCACATCAAGTGATTTCTCTCCGCCTGTCTTAGCCTTGGTGAGCAAAGCTACCCAATACTTGTGTTGATGGAAGGTAGCAGGTATACATATACTAGTCAAGGTGTGCACCAGCTGGCCTGGATGCCATGTTAAAAATAACTAATTGAATTAGCTAAAATATACGAACTAAATAAAACTAATTGCACTTTTTAGCAAATGGTGAAACCGTAGAATAGAAAACTGAAAAGGTACCTTTTTGAAGTGTCGTTCAATGCATGCCATCCTGTTTTTCCTTATGCCAACCTTCCCCCCTTCCCATTTAGAAAAAGCAAAATTTAGCAACCTTTCAATGCCTTGTAAAAGCTCAAAGTAGGAAAGCGATCAAAAACTTGGGAAACAACTTACCATTTATCTGTTACCATTTTTTCAAAAAACAACTTACCATTTACTGCAAGGAGTTACTAAAAATGGATTTTACCTAATGTTTCTCCAGACTTATACTCAACCCTTCTTTTACTTTATGTTATTGGAACAAAATAAAAACAACATTCCAAAAACTAATGTATCAAGTACTTGAGCTTTGAGGACTTCTTGTGCTGTATGGAAGTGTGGTACATGGAACAATGAGGATTATGTCATTTTGTTCGGTACTGTTTTATAATATCATGTGCACTTCCGTGCAGGATGACTTATTGCCTTGAACATCCGTCAAGAAAGATGCTTCTCATGCCAGTGGAGCCCTTCGAGCCAAACAAGTCTTGTTATGTTTGTTCCGAGGTATGATCTACAGTAATGTACAATAGATTGTGTTCCCGCCTGTGCTACCTTATGGAATTTTATTTGTCACTACTTTTTGATTTAATGCAAATCAATGAACAGACACCTTTAACGCTTGAGATTAATACTCATCGTTCGAAGTTGAGGGATTTTGTTGACAAGATTGTCAAAGAAAAACTTGGCATGAGCCTCCCATTGATCATGCATGGGGTGGCACTTCTTTATGAGGTGGGCGATGATCTTGAGGAAGATGAGGTTGCAAATTATGCAGCAAACCTTGACAAGGTAAGACACTGTC</genome_strand>
        <mrna_strand>AAATTCTGAAGTATTTCTCGAGGCATTAAGGCTCTTTTTCTCGAAAAGAGAGAAG...........................................................................................................................................................................................GAAATTGGCCAGTTGGGTTTTGATAAGGACGACCAGTTGGCTGTAGAGTTTGTCACTTCTGCAGCAAACATTCGTGCCGCTTCTTTTGGAATTCCATTACATAGCCTTTTTGAAGCTAAAGGTATTGCTGGCAATATTGTTCATGCCGTTGCAACAACAAATGCCATCATTGCAGGCTTGATTGTCCTTGAGGCAATCAAGGTGTTGCAAAATGATGTAAAAAGCTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTTATTGCCTTGAACATCCGTCAAGAAAGATGCTTCTCATGCCAGTGGAGCCCTTCGAGCCAAACAAGTCTTGTTATGTTTGTTCCGAG......................................................................................................ACACCTTTAACGCTTGAGATTAATACTCATCGTTCGAAGTTGAGGGATTTTGTTGACAAGATTGTCAAAGAAAAACTTGGCATGAGCCTCCCATTGATCATGCATGGGGTGGCACTTCTTTATGAGGTGGGCGATGATCTTGAGGAAGATGAGGTTGCAAATTATGCAGCAAACCTTGACAAGGTTCTA-TCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>79</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23723" PGL_stop="24814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23723" e_stop="24125"/>
            <exon e_start="24240" e_stop="24351"/>
            <exon e_start="24767" e_stop="24814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.897" e_score="0.978"/>
          <exon-intron don_prob="0.983" acc_prob="0.773" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="23723" e_stop="24125" e_length="403"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.897">
            <gDNA_intron_boundary i_start="24126" i_stop="24239" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24240" e_stop="24351" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.773">
            <gDNA_intron_boundary i_start="24352" i_stop="24766" i_length="415"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24767" e_stop="24814" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23723" stop="24125"/>
              <exon start="24240" stop="24348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24021" stop="24125"/>
              <exon start="24240" stop="24351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24072" stop="24125"/>
              <exon start="24240" stop="24351"/>
              <exon start="24767" stop="24814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTATTGAAGAACCTCTTGTTTTAATATTTGTCAAAATTTTTTTTACTGTCAAATGAACAACATACCCGTGAAATCATACAAAGTTTTTACTCTTTCTGGATAAAAACGTATTCTCATGTCACAAATTTTGTTTATGCTTGTATCATTCATGGAAATATGGTTTATTTGCCAATTGATTCTGTTTGGGATGTCTTTTTAAGGTTCACATAACACAAGGAGATCATGTGGGAAAAGCTGTTATTGTATCATGGGTGACTATGGATGAACCTGGTTCAAGTACAGTAGTATACTGGAGTGAGAAAAGCAAGCATAAGTGTAAGGCCAGCGGAAAAGTTACTTCCTATACATATTATAACTATACTTCTGGTTACATCCACCACTGCAATATCAAAAATTTGAAG : TTTGATACCAAATACTACTATAAGATTGGGATTGGACATATATCACGAACCTTCTGGTTCACAACTCCTCCAGAAGTCGGCCCTGATGTACCCTATACATTTGGTCTTATAG : GGGATCTTGGTCAGAGTTTTGATTCAAACAAGACACTCACACATTATG</gDNA_template>
            <first_frame> H  Y  *  R  T  S  C  F  N  I  C  Q  N  F  F  Y  C  Q  M  N  N  I  P  V  K  S  Y  K  V  F  T  L  S  G  *  K  R  I  L  M  S  Q  I  L  F  M  L  V  S  F  M  E  I  W  F  I  C  Q  L  I  L  F  G  M  S  F  *  G  S  H  N  T  R  R  S  C  G  K  S  C  Y  C  I  M  G  D  Y  G  *  T  W  F  K  Y  S  S  I  L  E  *  E  K  Q  A  *  V  *  G  Q  R  K  S  Y  F  L  Y  I  L  *  L  Y  F  W  L  H  P  P  L  Q  Y  Q  K  F  E   : V  *  Y  Q  I  L  L  *  D  W  D  W  T  Y  I  T  N  L  L  V  H  N  S  S  R  S  R  P  *  C  T  L  Y  I  W  S  Y  R :   G  S  W  S  E  F  *  F  K  Q  D  T  H  T  L   </first_frame>
            <second_frame>  I  I  E  E  P  L  V  L  I  F  V  K  I  F  F  T  V  K  *  T  T  Y  P  *  N  H  T  K  F  L  L  F  L  D  K  N  V  F  S  C  H  K  F  C  L  C  L  Y  H  S  W  K  Y  G  L  F  A  N  *  F  C  L  G  C  L  F  K  V  H  I  T  Q  G  D  H  V  G  K  A  V  I  V  S  W  V  T  M  D  E  P  G  S  S  T  V  V  Y  W  S  E  K  S  K  H  K  C  K  A  S  G  K  V  T  S  Y  T  Y  Y  N  Y  T  S  G  Y  I  H  H  C  N  I  K  N  L  K  :  F  D  T  K  Y  Y  Y  K  I  G  I  G  H  I  S  R  T  F  W  F  T  T  P  P  E  V  G  P  D  V  P  Y  T  F  G  L  I   : G  D  L  G  Q  S  F  D  S  N  K  T  L  T  H  Y  </second_frame>
            <third_frame>   L  L  K  N  L  L  F  *  Y  L  S  K  F  F  L  L  S  N  E  Q  H  T  R  E  I  I  Q  S  F  Y  S  F  W  I  K  T  Y  S  H  V  T  N  F  V  Y  A  C  I  I  H  G  N  M  V  Y  L  P  I  D  S  V  W  D  V  F  L  R  F  T  *  H  K  E  I  M  W  E  K  L  L  L  Y  H  G  *  L  W  M  N  L  V  Q  V  Q  *  Y  T  G  V  R  K  A  S  I  S  V  R  P  A  E  K  L  L  P  I  H  I  I  T  I  L  L  V  T  S  T  T  A  I  S  K  I  *  S :   L  I  P  N  T  T  I  R  L  G  L  D  I  Y  H  E  P  S  G  S  Q  L  L  Q  K  S  A  L  M  Y  P  I  H  L  V  L  *  :  G  I  L  V  R  V  L  I  Q  T  R  H  S  H  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23901" stop="24125"/>
                    <exon start="24240" stop="24351"/>
                    <exon start="24767" stop="24813"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCLGCLFKVHITQGDHVGKAVIVSWVTMDEPGSSTVVYWSEKSKHKCKASGKVTSYTYYNYTSGYIHHCNIKNLKFDTKYYYKIGIGHISRTFWFTTPPEVGPDVPYTFGLIGDLGQSFDSNKTLTHY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="24922" PGL_stop="26737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24922" e_stop="24996"/>
            <exon e_start="25502" e_stop="25640"/>
            <exon e_start="25911" e_stop="26131"/>
            <exon e_start="26226" e_stop="26347"/>
            <exon e_start="26446" e_stop="26737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.887" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.884" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24922" e_stop="24996" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="24997" i_stop="25501" i_length="505"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25502" e_stop="25640" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.806" acc_prob="0.887">
            <gDNA_intron_boundary i_start="25641" i_stop="25910" i_length="270"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25911" e_stop="26131" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.989">
            <gDNA_intron_boundary i_start="26132" i_stop="26225" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26226" e_stop="26347" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.884">
            <gDNA_intron_boundary i_start="26348" i_stop="26445" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="26446" e_stop="26737" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24922" stop="24996"/>
              <exon start="25502" stop="25640"/>
              <exon start="25911" stop="25919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25562" stop="25640"/>
              <exon start="25911" stop="26131"/>
              <exon start="26226" stop="26347"/>
              <exon start="26446" stop="26737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25562" stop="25640"/>
              <exon start="25911" stop="26131"/>
              <exon start="26226" stop="26347"/>
              <exon start="26446" stop="26643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25562" stop="25640"/>
              <exon start="25911" stop="26131"/>
              <exon start="26226" stop="26347"/>
              <exon start="26446" stop="26509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGAGAGAAGTACTGCTTATCAACCTTGGATTTGGACAGCAGGAAATCATGAGTTAGATTTTGCTCCTGAAATT : GGGGAAACAAAACCATTTAAGCCCTACACTCATCGGTATCATGTCCCATTCAGAGCATCAGACAGCACATCTCCACTTTGGTATTCAATCAAGCGAGCTTCAGCGTATATCATAGTTTTATCCTCATATTCAGCATATG : GCAAATACACTCCTCAATACAAGTGGCTTGAGGAAGAGCTACCAAAGGTTAACAGGACTGAGACTCCGTGGCTGATTGTTCTAGTACATTCCCCATGGTATAACAGCTACAACTATCACTATATGGAAGGGGAAACCATGAGAGTAATGTATGAACCATGGTTTGTACAGTATAAAGTGGATATGGTTTTTGCAGGTCATGTTCATGCTTATGAAAGAACA : GAACGGATTTCTAATGTGGCCTACAACGTTGTCAATGGAGAATGCAGTCCTATTAAAGATCAATCTGCTCCAATTTATGTAACAATCGGTGATGGAGGAAATCTTGAAGGCCTAGCCACCAA : CATGACAGAGCCACAACCAGCTTACTCTGCATTCCGCGAGGCCAGTTTTGGACATGCCACTCTTGCCATCAACAATAGAACTCATGCTTATTATAGTTGGCATCGTAATCAAGATGGATATGCTGTGGAAGCTGATAAGATATGGGTTAACAACCGAGTTTGGCATCCAGTTGATGAGTGCACAACAGCCAAATCATGATATGTGATATACACAAAATTTCATCCATCTTTTCTTTCCTTTTCCTCAGTAACATTGTGTACTTGTCGACGAATAAATATTTTATTATTTCAA</gDNA_template>
            <first_frame> V  E  R  S  T  A  Y  Q  P  W  I  W  T  A  G  N  H  E  L  D  F  A  P  E  I  :  G  E  T  K  P  F  K  P  Y  T  H  R  Y  H  V  P  F  R  A  S  D  S  T  S  P  L  W  Y  S  I  K  R  A  S  A  Y  I  I  V  L  S  S  Y  S  A  Y   : G  K  Y  T  P  Q  Y  K  W  L  E  E  E  L  P  K  V  N  R  T  E  T  P  W  L  I  V  L  V  H  S  P  W  Y  N  S  Y  N  Y  H  Y  M  E  G  E  T  M  R  V  M  Y  E  P  W  F  V  Q  Y  K  V  D  M  V  F  A  G  H  V  H  A  Y  E  R  T  :  E  R  I  S  N  V  A  Y  N  V  V  N  G  E  C  S  P  I  K  D  Q  S  A  P  I  Y  V  T  I  G  D  G  G  N  L  E  G  L  A  T  N :   M  T  E  P  Q  P  A  Y  S  A  F  R  E  A  S  F  G  H  A  T  L  A  I  N  N  R  T  H  A  Y  Y  S  W  H  R  N  Q  D  G  Y  A  V  E  A  D  K  I  W  V  N  N  R  V  W  H  P  V  D  E  C  T  T  A  K  S  *  Y  V  I  Y  T  K  F  H  P  S  F  L  S  F  S  S  V  T  L  C  T  C  R  R  I  N  I  L  L  F  Q </first_frame>
            <second_frame>  *  R  E  V  L  L  I  N  L  G  F  G  Q  Q  E  I  M  S  *  I  L  L  L  K  L :   G  K  Q  N  H  L  S  P  T  L  I  G  I  M  S  H  S  E  H  Q  T  A  H  L  H  F  G  I  Q  S  S  E  L  Q  R  I  S  *  F  Y  P  H  I  Q  H  M  :  A  N  T  L  L  N  T  S  G  L  R  K  S  Y  Q  R  L  T  G  L  R  L  R  G  *  L  F  *  Y  I  P  H  G  I  T  A  T  T  I  T  I  W  K  G  K  P  *  E  *  C  M  N  H  G  L  Y  S  I  K  W  I  W  F  L  Q  V  M  F  M  L  M  K  E  Q :   N  G  F  L  M  W  P  T  T  L  S  M  E  N  A  V  L  L  K  I  N  L  L  Q  F  M  *  Q  S  V  M  E  E  I  L  K  A  *  P  P   : T  *  Q  S  H  N  Q  L  T  L  H  S  A  R  P  V  L  D  M  P  L  L  P  S  T  I  E  L  M  L  I  I  V  G  I  V  I  K  M  D  M  L  W  K  L  I  R  Y  G  L  T  T  E  F  G  I  Q  L  M  S  A  Q  Q  P  N  H  D  M  *  Y  T  Q  N  F  I  H  L  F  F  P  F  P  Q  *  H  C  V  L  V  D  E  *  I  F  Y  Y  F   </second_frame>
            <third_frame>   R  E  K  Y  C  L  S  T  L  D  L  D  S  R  K  S  *  V  R  F  C  S  *  N   : W  G  N  K  T  I  *  A  L  H  S  S  V  S  C  P  I  Q  S  I  R  Q  H  I  S  T  L  V  F  N  Q  A  S  F  S  V  Y  H  S  F  I  L  I  F  S  I  W :   Q  I  H  S  S  I  Q  V  A  *  G  R  A  T  K  G  *  Q  D  *  D  S  V  A  D  C  S  S  T  F  P  M  V  *  Q  L  Q  L  S  L  Y  G  R  G  N  H  E  S  N  V  *  T  M  V  C  T  V  *  S  G  Y  G  F  C  R  S  C  S  C  L  *  K  N   : R  T  D  F  *  C  G  L  Q  R  C  Q  W  R  M  Q  S  Y  *  R  S  I  C  S  N  L  C  N  N  R  *  W  R  K  S  *  R  P  S  H  Q  :  H  D  R  A  T  T  S  L  L  C  I  P  R  G  Q  F  W  T  C  H  S  C  H  Q  Q  *  N  S  C  L  L  *  L  A  S  *  S  R  W  I  C  C  G  S  *  *  D  M  G  *  Q  P  S  L  A  S  S  *  *  V  H  N  S  Q  I  M  I  C  D  I  H  K  I  S  S  I  F  S  F  L  F  L  S  N  I  V  Y  L  S  T  N  K  Y  F  I  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24922" stop="24996"/>
                    <exon start="25502" stop="25640"/>
                    <exon start="25911" stop="26131"/>
                    <exon start="26226" stop="26347"/>
                    <exon start="26446" stop="26644"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VERSTAYQPWIWTAGNHELDFAPEIGETKPFKPYTHRYHVPFRASDSTSPLWYSIKRASAYIIVLSSYSAYGKYTPQYKWLEEELPKVNRTETPWLIVLVHSPWYNSYNYHYMEGETMRVMYEPWFVQYKVDMVFAGHVHAYERTERISNVAYNVVNGECSPIKDQSAPIYVTIGDGGNLEGLATNMTEPQPAYSAFREASFGHATLAINNRTHAYYSWHRNQDGYAVEADKIWVNNRVWHPVDECTTAKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="32613" PGL_stop="40649"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32613" e_stop="33005"/>
            <exon e_start="33386" e_stop="33495"/>
            <exon e_start="33839" e_stop="33908"/>
            <exon e_start="35304" e_stop="35460"/>
            <exon e_start="35543" e_stop="35693"/>
            <exon e_start="37821" e_stop="37960"/>
            <exon e_start="38312" e_stop="38359"/>
            <exon e_start="39069" e_stop="39179"/>
            <exon e_start="39270" e_stop="39451"/>
            <exon e_start="39542" e_stop="39663"/>
            <exon e_start="40197" e_stop="40273"/>
            <exon e_start="40368" e_stop="40649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.515" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.725" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.693" acc_prob="0.887" e_score="1.000"/>
          <exon-intron don_prob="0.409" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.147" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.570" e_score="1.000"/>
          <exon-intron don_prob="0.324" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32613" e_stop="33005" e_length="393"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.515">
            <gDNA_intron_boundary i_start="33006" i_stop="33385" i_length="380"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33386" e_stop="33495" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.725">
            <gDNA_intron_boundary i_start="33496" i_stop="33838" i_length="343"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33839" e_stop="33908" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="33909" i_stop="35303" i_length="1395"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35304" e_stop="35460" e_length="157"/>
          </exon>
          <intron i_serial="4" don_prob="0.693" acc_prob="0.887">
            <gDNA_intron_boundary i_start="35461" i_stop="35542" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35543" e_stop="35693" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.409" acc_prob="0.966">
            <gDNA_intron_boundary i_start="35694" i_stop="37820" i_length="2127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37821" e_stop="37960" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.147" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37961" i_stop="38311" i_length="351"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38312" e_stop="38359" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.925">
            <gDNA_intron_boundary i_start="38360" i_stop="39068" i_length="709"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39069" e_stop="39179" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.985" acc_prob="0.967">
            <gDNA_intron_boundary i_start="39180" i_stop="39269" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39270" e_stop="39451" e_length="182"/>
          </exon>
          <intron i_serial="9" don_prob="0.963" acc_prob="0.985">
            <gDNA_intron_boundary i_start="39452" i_stop="39541" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="39542" e_stop="39663" e_length="122"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.570">
            <gDNA_intron_boundary i_start="39664" i_stop="40196" i_length="533"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="40197" e_stop="40273" e_length="77"/>
          </exon>
          <intron i_serial="11" don_prob="0.324" acc_prob="0.888">
            <gDNA_intron_boundary i_start="40274" i_stop="40367" i_length="94"/>
          </intron>
          <exon e_serial="12" e_score="0.979">
            <gDNA_exon_boundary e_start="40368" e_stop="40649" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32613" stop="33005"/>
              <exon start="33386" stop="33495"/>
              <exon start="33839" stop="33908"/>
              <exon start="35304" stop="35460"/>
              <exon start="35543" stop="35591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32620" stop="33005"/>
              <exon start="33386" stop="33495"/>
              <exon start="33839" stop="33908"/>
              <exon start="35304" stop="35460"/>
              <exon start="35543" stop="35577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32623" stop="33005"/>
              <exon start="33386" stop="33495"/>
              <exon start="33839" stop="33904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32626" stop="32835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32627" stop="33005"/>
              <exon start="33386" stop="33495"/>
              <exon start="33839" stop="33908"/>
              <exon start="35304" stop="35453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32627" stop="33005"/>
              <exon start="33386" stop="33433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32964" stop="33005"/>
              <exon start="33386" stop="33495"/>
              <exon start="33839" stop="33908"/>
              <exon start="35304" stop="35460"/>
              <exon start="35543" stop="35613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33894" stop="33908"/>
              <exon start="35304" stop="35460"/>
              <exon start="35543" stop="35693"/>
              <exon start="37821" stop="37890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37847" stop="37960"/>
              <exon start="38312" stop="38359"/>
              <exon start="39069" stop="39179"/>
              <exon start="39270" stop="39451"/>
              <exon start="39542" stop="39663"/>
              <exon start="40197" stop="40273"/>
              <exon start="40368" stop="40398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37848" stop="37960"/>
              <exon start="38312" stop="38359"/>
              <exon start="39069" stop="39179"/>
              <exon start="39270" stop="39451"/>
              <exon start="39542" stop="39663"/>
              <exon start="40197" stop="40232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39326" stop="39451"/>
              <exon start="39542" stop="39663"/>
              <exon start="40197" stop="40273"/>
              <exon start="40368" stop="40649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549697" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACGGAAACTACTCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAG : GACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAG : TGGGCGATGGATGCCTTCAGCAAGTCCAGTTTCCCAGTTACTCGAGTCGGATAGCTGGAATTCCTTAAAG : GATTTACGAAGTCCCAGTCAAGCAAGTCAAGCATTGAGTCGGACTACTAGTTTCAGTTCAAATGTGAGTGACACTGATGATCGTCCACGTAGAAGGTCGGAACCTGCATATTCCTTTGTGGGGATGCATTGCATTTTTGATCAATGCAAGGCCATGG : TTACGGTTATAAAGTTTGGGCATATGAGTTCTGATCTACTTGCATATGGAGCAACCGATGGCAGTTTAACTGTATGCAGTGTCTCCATGCCCCCTTCAGTCATTAAGCAGTTAACAGGGCATTCAAAAGATGTCACAGGTTGGATTAACTG : ATTTTGACTTCTCCACAAACAATCAGTACATTGCATCATCTTCAATGGATAAAACTGTCAGAGTATGGGATATTTCTAGAGGCCTTTGCATTAGGGTGATTTATGGAGTCTCTTCACAGCTTTGTATTCGATTTCATCCT : GTGAACAACAACTTCCTTTCTGCTGGCAATGCAAAAAAAGAAATAAAT : GTGTTCAATTTTAGCACGGGGAGAACGATCAGTACAACTGTGGTCGATGGCGAAGTCACTGCCATGGACCATGACCACACTGGTCAGTTTATTTTCTGCGGTGATAGTCAG : GGGTGTATTTACACAGTTAGTATGAACTCACATACAGGTGCACTATCTCGAACTCATCGGAATAGAAGTAGCAGTAAGCATAGATCTGCTGTTACAACTGTTGAGTACAGGACATTTTCTCTGCTGGCACGAGGCCCTGTCCTGCTGACTTTTACTCGTGACGGAAGTTTGTCTTTTTTCAG : CATCTCTTTGGAGATGAAAGGTTATTTGACACTCCGGTGCTCACTGAAGCTGGCTCCACGGCTACACAGCATTCGTGCTTCTTTCTGTCCTTTACTTTCCCTTGAAAAGGGAGAATACATAG : TTGCTGGGAGTGAAGATGCAAATGTTTACTTTTATGATTTGACTCGACCAAAGAATACATGTGTAAACAAACTTCAG : GGCCATGGCTATCCAGTAATAGGTATTGCTTGGAATCATGGAGAGAACTTGTTAGCGTCGTCTGATTTTGGCGGCACCGTCATTGTATGGAAGAGAGCAAAAACAGCTTAACATCAGTGCAGATCTGAGCTAAAAGCAGTTTGCATGCAGTTGATCTGTTCGATTCTGGCGTGGAATCTGCGAGGATTGTAATTTTCTATACAGGCATATCAGTTTAGCTATCTGAAAGTTTTTTAGGGGACTTGAAAAGTGTGACATCAGTGAGCTTTTGCATACTGATCG</gDNA_template>
            <first_frame> E  T  E  T  T  Q  L  H  I  R  L  S  R  H  N  S  H  F  G  N  S  V  F  S  P  S  P  R  E  *  I  I  I  *  K  A  L  P  P  R  S  G  C  R  R  R  R  F  F  E  *  R  V  H  L  N  F  L  E  M  A  E  S  T  T  I  Q  R  S  S  P  E  G  D  D  H  E  L  K  E  E  N  I  E  K  K  K  D  F  T  A  N  P  E  F  F  S  C  M  L  Q  P  V  P  A  D  S  D  P  N  Y  I  G  I  R  R  F  L  L  H  R  K  A  E  S  G  V  L  R  R  K  :  D  W  R  G  N  G  K  G  Y  V  A  Y  R  N  Y  I  S  R  P  R  N  W  E  T  L  Q  I  P  S  R  P  S  T  P  G  N  S :   G  R  W  M  P  S  A  S  P  V  S  Q  L  L  E  S  D  S  W  N  S  L  K  :  D  L  R  S  P  S  Q  A  S  Q  A  L  S  R  T  T  S  F  S  S  N  V  S  D  T  D  D  R  P  R  R  R  S  E  P  A  Y  S  F  V  G  M  H  C  I  F  D  Q  C  K  A  M   : V  T  V  I  K  F  G  H  M  S  S  D  L  L  A  Y  G  A  T  D  G  S  L  T  V  C  S  V  S  M  P  P  S  V  I  K  Q  L  T  G  H  S  K  D  V  T  G  W  I  N  * :   F  *  L  L  H  K  Q  S  V  H  C  I  I  F  N  G  *  N  C  Q  S  M  G  Y  F  *  R  P  L  H  *  G  D  L  W  S  L  F  T  A  L  Y  S  I  S  S   : C  E  Q  Q  L  P  F  C  W  Q  C  K  K  R  N  K   : C  V  Q  F  *  H  G  E  N  D  Q  Y  N  C  G  R  W  R  S  H  C  H  G  P  *  P  H  W  S  V  Y  F  L  R  *  *  S   : G  V  Y  L  H  S  *  Y  E  L  T  Y  R  C  T  I  S  N  S  S  E  *  K  *  Q  *  A  *  I  C  C  Y  N  C  *  V  Q  D  I  F  S  A  G  T  R  P  C  P  A  D  F  Y  S  *  R  K  F  V  F  F  Q  :  H  L  F  G  D  E  R  L  F  D  T  P  V  L  T  E  A  G  S  T  A  T  Q  H  S  C  F  F  L  S  F  T  F  P  *  K  G  R  I  H  S :   C  W  E  *  R  C  K  C  L  L  L  *  F  D  S  T  K  E  Y  M  C  K  Q  T  S   : G  P  W  L  S  S  N  R  Y  C  L  E  S  W  R  E  L  V  S  V  V  *  F  W  R  H  R  H  C  M  E  E  S  K  N  S  L  T  S  V  Q  I  *  A  K  S  S  L  H  A  V  D  L  F  D  S  G  V  E  S  A  R  I  V  I  F  Y  T  G  I  S  V  *  L  S  E  S  F  L  G  D  L  K  S  V  T  S  V  S  F  C  I  L  I  </first_frame>
            <second_frame>  R  R  K  L  L  N  C  T  F  A  L  V  V  T  I  H  I  L  A  T  P  F  S  A  H  R  R  E  N  K  *  *  F  E  K  R  F  L  H  D  L  V  A  G  G  G  D  F  L  N  E  E  F  T  *  I  F  S  K  W  R  N  R  R  Q  F  R  G  A  R  L  K  V  M  I  M  N  *  R  R  R  I  L  R  R  K  R  I  L  L  Q  I  L  S  F  S  V  V  C  F  S  Q  C  L  P  I  Q  I  Q  I  T  L  E  Y  A  G  S  S  S  I  A  K  L  N  P  V  C  F  V  A  R :   T  G  E  A  M  E  K  D  T  *  L  I  V  I  I  L  V  G  Q  G  I  G  R  H  C  K  Y  Q  A  D  Q  V  P  Q  G  T   : V  G  D  G  C  L  Q  Q  V  Q  F  P  S  Y  S  S  R  I  A  G  I  P  *  R :   I  Y  E  V  P  V  K  Q  V  K  H  *  V  G  L  L  V  S  V  Q  M  *  V  T  L  M  I  V  H  V  E  G  R  N  L  H  I  P  L  W  G  C  I  A  F  L  I  N  A  R  P  W  :  L  R  L  *  S  L  G  I  *  V  L  I  Y  L  H  M  E  Q  P  M  A  V  *  L  Y  A  V  S  P  C  P  L  Q  S  L  S  S  *  Q  G  I  Q  K  M  S  Q  V  G  L  T   : D  F  D  F  S  T  N  N  Q  Y  I  A  S  S  S  M  D  K  T  V  R  V  W  D  I  S  R  G  L  C  I  R  V  I  Y  G  V  S  S  Q  L  C  I  R  F  H  P  :  V  N  N  N  F  L  S  A  G  N  A  K  K  E  I  N  :  V  F  N  F  S  T  G  R  T  I  S  T  T  V  V  D  G  E  V  T  A  M  D  H  D  H  T  G  Q  F  I  F  C  G  D  S  Q  :  G  C  I  Y  T  V  S  M  N  S  H  T  G  A  L  S  R  T  H  R  N  R  S  S  S  K  H  R  S  A  V  T  T  V  E  Y  R  T  F  S  L  L  A  R  G  P  V  L  L  T  F  T  R  D  G  S  L  S  F  F  S :   I  S  L  E  M  K  G  Y  L  T  L  R  C  S  L  K  L  A  P  R  L  H  S  I  R  A  S  F  C  P  L  L  S  L  E  K  G  E  Y  I   : V  A  G  S  E  D  A  N  V  Y  F  Y  D  L  T  R  P  K  N  T  C  V  N  K  L  Q  :  G  H  G  Y  P  V  I  G  I  A  W  N  H  G  E  N  L  L  A  S  S  D  F  G  G  T  V  I  V  W  K  R  A  K  T  A  *  H  Q  C  R  S  E  L  K  A  V  C  M  Q  L  I  C  S  I  L  A  W  N  L  R  G  L  *  F  S  I  Q  A  Y  Q  F  S  Y  L  K  V  F  *  G  T  *  K  V  *  H  Q  *  A  F  A  Y  *  S </second_frame>
            <third_frame>   D  G  N  Y  S  I  A  H  S  P  *  S  S  Q  F  T  F  W  Q  L  R  F  Q  P  I  A  E  R  I  N  N  N  L  K  S  A  S  S  T  I  W  L  P  E  E  A  I  F  *  M  K  S  S  P  E  F  S  R  N  G  G  I  D  D  N  S  E  E  L  A  *  R  *  *  S  *  T  E  G  G  E  Y  *  E  E  K  G  F  Y  C  K  S  *  V  F  Q  L  Y  A  S  A  S  A  C  R  F  R  S  K  L  H  W  N  T  P  V  P  P  P  S  Q  S  *  I  R  C  A  S  S  Q   : G  L  E  R  Q  W  K  R  I  R  S  L  S  *  L  Y  *  *  A  K  E  L  G  D  I  A  N  T  K  P  T  K  Y  P  R  E  Q  :  W  A  M  D  A  F  S  K  S  S  F  P  V  T  R  V  G  *  L  E  F  L  K   : G  F  T  K  S  Q  S  S  K  S  S  I  E  S  D  Y  *  F  Q  F  K  C  E  *  H  *  *  S  S  T  *  K  V  G  T  C  I  F  L  C  G  D  A  L  H  F  *  S  M  Q  G  H  G :   Y  G  Y  K  V  W  A  Y  E  F  *  S  T  C  I  W  S  N  R  W  Q  F  N  C  M  Q  C  L  H  A  P  F  S  H  *  A  V  N  R  A  F  K  R  C  H  R  L  D  *  L  :  I  L  T  S  P  Q  T  I  S  T  L  H  H  L  Q  W  I  K  L  S  E  Y  G  I  F  L  E  A  F  A  L  G  *  F  M  E  S  L  H  S  F  V  F  D  F  I  L :   *  T  T  T  S  F  L  L  A  M  Q  K  K  K  *  M :   C  S  I  L  A  R  G  E  R  S  V  Q  L  W  S  M  A  K  S  L  P  W  T  M  T  T  L  V  S  L  F  S  A  V  I  V  R :   G  V  F  T  Q  L  V  *  T  H  I  Q  V  H  Y  L  E  L  I  G  I  E  V  A  V  S  I  D  L  L  L  Q  L  L  S  T  G  H  F  L  C  W  H  E  A  L  S  C  *  L  L  L  V  T  E  V  C  L  F  S   : A  S  L  W  R  *  K  V  I  *  H  S  G  A  H  *  S  W  L  H  G  Y  T  A  F  V  L  L  S  V  L  Y  F  P  L  K  R  E  N  T  *  :  L  L  G  V  K  M  Q  M  F  T  F  M  I  *  L  D  Q  R  I  H  V  *  T  N  F  R :   A  M  A  I  Q  *  *  V  L  L  G  I  M  E  R  T  C  *  R  R  L  I  L  A  A  P  S  L  Y  G  R  E  Q  K  Q  L  N  I  S  A  D  L  S  *  K  Q  F  A  C  S  *  S  V  R  F  W  R  G  I  C  E  D  C  N  F  L  Y  R  H  I  S  L  A  I  *  K  F  F  R  G  L  E  K  C  D  I  S  E  L  L  H  T  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35657" stop="35693"/>
                    <exon start="37821" stop="37960"/>
                    <exon start="38312" stop="38359"/>
                    <exon start="39069" stop="39179"/>
                    <exon start="39270" stop="39451"/>
                    <exon start="39542" stop="39663"/>
                    <exon start="40197" stop="40273"/>
                    <exon start="40368" stop="40478"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGIQKMSQVGLTDFDFSTNNQYIASSSMDKTVRVWDISRGLCIRVIYGVSSQLCIRFHPVNNNFLSAGNAKKEINVFNFSTGRTISTTVVDGEVTAMDHDHTGQFIFCGDSQGCIYTVSMNSHTGALSRTHRNRSSSKHRSAVTTVEYRTFSLLARGPVLLTFTRDGSLSFFSISLEMKGYLTLRCSLKLAPRLHSIRASFCPLLSLEKGEYIVAGSEDANVYFYDLTRPKNTCVNKLQGHGYPVIGIAWNHGENLLASSDFGGTVIVWKRAKTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32626" e_stop="33005"/>
            <exon e_start="33386" e_stop="33595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.515" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32626" e_stop="33005" e_length="380"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.515">
            <gDNA_intron_boundary i_start="33006" i_stop="33385" i_length="380"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="33386" e_stop="33595" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32626" stop="32835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32627" stop="33005"/>
              <exon start="33386" stop="33595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32627" stop="33005"/>
              <exon start="33386" stop="33433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAATTGCACATTCGCCTTAGTCGTCACAATTCACATTTTGGCAACTCCGTTTTCAGCCCATCGCCGAGAGAATAAATAATAATTTGAAAAGCGCTTCCTCCACGATCTGGTTGCCGGAGGAGGCGATTTTTTGAATGAAGAGTTCACCTGAATTTTCTCGAAATGGCGGAATCGACGACAATTCAGAGGAGCTCGCCTGAAGGTGATGATCATGAACTGAAGGAGGAGAATATTGAGAAGAAAAAGGATTTTACTGCAAATCCTGAGTTTTTCAGTTGTATGCTTCAGCCAGTGCCTGCCGATTCAGATCCAAATTACATTGGAATACGCCGGTTCCTCCTCCATCGCAAAGCTGAATCCGGTGTGCTTCGTCGCAAG : GACTGGAGAGGCAATGGAAAAGGATACGTAGCTTATCGTAATTATATTAGTAGGCCAAGGAATTGGGAGACATTGCAAATACCAAGCCGACCAAGTACCCCAGGGAACAGGTGGTTGAGATCTATCTTTATTTCTTCTAGTAGCATGCAACCCCTTTATTGCTTAGTGTGCTTGATTACGATTCATAATTGGTTATTTACTCCTTAACAT</gDNA_template>
            <first_frame> L  N  C  T  F  A  L  V  V  T  I  H  I  L  A  T  P  F  S  A  H  R  R  E  N  K  *  *  F  E  K  R  F  L  H  D  L  V  A  G  G  G  D  F  L  N  E  E  F  T  *  I  F  S  K  W  R  N  R  R  Q  F  R  G  A  R  L  K  V  M  I  M  N  *  R  R  R  I  L  R  R  K  R  I  L  L  Q  I  L  S  F  S  V  V  C  F  S  Q  C  L  P  I  Q  I  Q  I  T  L  E  Y  A  G  S  S  S  I  A  K  L  N  P  V  C  F  V  A  R :   T  G  E  A  M  E  K  D  T  *  L  I  V  I  I  L  V  G  Q  G  I  G  R  H  C  K  Y  Q  A  D  Q  V  P  Q  G  T  G  G  *  D  L  S  L  F  L  L  V  A  C  N  P  F  I  A  *  C  A  *  L  R  F  I  I  G  Y  L  L  L  N   </first_frame>
            <second_frame>  S  I  A  H  S  P  *  S  S  Q  F  T  F  W  Q  L  R  F  Q  P  I  A  E  R  I  N  N  N  L  K  S  A  S  S  T  I  W  L  P  E  E  A  I  F  *  M  K  S  S  P  E  F  S  R  N  G  G  I  D  D  N  S  E  E  L  A  *  R  *  *  S  *  T  E  G  G  E  Y  *  E  E  K  G  F  Y  C  K  S  *  V  F  Q  L  Y  A  S  A  S  A  C  R  F  R  S  K  L  H  W  N  T  P  V  P  P  P  S  Q  S  *  I  R  C  A  S  S  Q   : G  L  E  R  Q  W  K  R  I  R  S  L  S  *  L  Y  *  *  A  K  E  L  G  D  I  A  N  T  K  P  T  K  Y  P  R  E  Q  V  V  E  I  Y  L  Y  F  F  *  *  H  A  T  P  L  L  L  S  V  L  D  Y  D  S  *  L  V  I  Y  S  L  T  </second_frame>
            <third_frame>   Q  L  H  I  R  L  S  R  H  N  S  H  F  G  N  S  V  F  S  P  S  P  R  E  *  I  I  I  *  K  A  L  P  P  R  S  G  C  R  R  R  R  F  F  E  *  R  V  H  L  N  F  L  E  M  A  E  S  T  T  I  Q  R  S  S  P  E  G  D  D  H  E  L  K  E  E  N  I  E  K  K  K  D  F  T  A  N  P  E  F  F  S  C  M  L  Q  P  V  P  A  D  S  D  P  N  Y  I  G  I  R  R  F  L  L  H  R  K  A  E  S  G  V  L  R  R  K  :  D  W  R  G  N  G  K  G  Y  V  A  Y  R  N  Y  I  S  R  P  R  N  W  E  T  L  Q  I  P  S  R  P  S  T  P  G  N  R  W  L  R  S  I  F  I  S  S  S  S  M  Q  P  L  Y  C  L  V  C  L  I  T  I  H  N  W  L  F  T  P  *  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32766" stop="33005"/>
                    <exon start="33386" stop="33592"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVHLNFLEMAESTTIQRSSPEGDDHELKEENIEKKKDFTANPEFFSCMLQPVPADSDPNYIGIRRFLLHRKAESGVLRRKDWRGNGKGYVAYRNYISRPRNWETLQIPSRPSTPGNRWLRSIFISSSSMQPLYCLVCLITIHNWLFTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="47165" PGL_stop="40889"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45022" e_stop="44123"/>
            <exon e_start="41195" e_stop="40889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45022" e_stop="44123" e_length="900"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="41195" e_stop="40889" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45022" stop="44415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45022" stop="44533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44676" stop="44123"/>
              <exon start="41195" stop="41016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44676" stop="44123"/>
              <exon start="41195" stop="41033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44676" stop="44123"/>
              <exon start="41195" stop="41088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44676" stop="44130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44676" stop="44132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44676" stop="44197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44676" stop="44231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44676" stop="44231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44676" stop="44232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44579" stop="44123"/>
              <exon start="41195" stop="40889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44525" stop="44123"/>
              <exon start="41195" stop="40889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44393" stop="44123"/>
              <exon start="41195" stop="40980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCACTGAACCATAGTTAATTAACACTTTCTCTCCTCAAATTATTACTTAATCAAGTTAATTGAAGGGTTCTGATTTGAAAAATTGAATGTTGGTAAGGTTTTTGTGTTTAACAATATATTCATAGTGGGATAGACGAAGTTTAACATGACAGACTCTCTTGTAGTATGTTAACAATTTATTTCAGAGGGTTTTGATATTTCTGATCAATTTATTTCCATTGTGGTTTGAACACCAGAGTTCTTGTTAAGTTTGGAGATTTGGTCTGTTTTGTTTTTTACTCTGCTTGTATTGAACTTTCATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCGAAAGACAAAATCCGAGTTTTTAATGCGAAAACAGAAAGACGCCATTATTTTAGCTATCTTAGGTTGTCAGGCCTTTAGTAATATTAGGTATGTACTTTTCTGCATCGAAAATCTTGTTTTGGAAGGATACCATAGTGTGGGAGAAGCCTTAGAGCTGAATGCATCAGATTCTTGATAACCTTTCCCGACTGGATTCAGGTGAAAATATGGATTTTTTTGTTTAAGGGCTGACATGTCTTCAGTTAAGTTTTCTGCTAGCATAGTTGCATGATTAAAGCCATTCATATGTCAAGATTCTTAAGCAACAAAGCATTTTCCTAAACTGGTACATCACTTGCGTCTACTTCTAACATCTGAAATGACTGCAACTAAGTGCAATCAATTTTCATCCAGGTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG : GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTTCTCTTCTGTTCTTTGACGCTATTTTCTTATTAGAGCGACAGGTGTTGTTTATGATAAATTAAAGTAGTTTACTGTTTTCTGTAAATACGTC</gDNA_template>
            <first_frame> Y  H  *  T  I  V  N  *  H  F  L  S  S  N  Y  Y  L  I  K  L  I  E  G  F  *  F  E  K  L  N  V  G  K  V  F  V  F  N  N  I  F  I  V  G  *  T  K  F  N  M  T  D  S  L  V  V  C  *  Q  F  I  S  E  G  F  D  I  S  D  Q  F  I  S  I  V  V  *  T  P  E  F  L  L  S  L  E  I  W  S  V  L  F  F  T  L  L  V  L  N  F  H  L  S  T  Y  L  Q  L  G  W  A  K  E  R  M  K  K  P  S  G  I  F  A  R  K  T  K  S  E  F  L  M  R  K  Q  K  D  A  I  I  L  A  I  L  G  C  Q  A  F  S  N  I  R  Y  V  L  F  C  I  E  N  L  V  L  E  G  Y  H  S  V  G  E  A  L  E  L  N  A  S  D  S  *  *  P  F  P  T  G  F  R  *  K  Y  G  F  F  C  L  R  A  D  M  S  S  V  K  F  S  A  S  I  V  A  *  L  K  P  F  I  C  Q  D  S  *  A  T  K  H  F  P  K  L  V  H  H  L  R  L  L  L  T  S  E  M  T  A  T  K  C  N  Q  F  S  S  R  F  H  P  T  C  I  D  M  T  P  E  E  A  K  R  L  D  H  F  F  C  Q  N  C  S  S  E  D  Q  K  K  L  L  N  S  H  A  T  S  R  H  A  D  I  K  :  V  E  S  K  R  R  R  R  *  Y  L  F  G  Q  R  Y  A  S  K  H  *  G  N  Y  N  C  I  R  S  D  N  H  V  D  *  C  K  R  K  *  L  K  L  C  I  T  Y  W  F  M  L  L  V  S  L  Y  V  G  R  G  G  V  W  L  C  V  I  I  Y  C  R  F  L  F  C  S  L  T  L  F  S  Y  *  S  D  R  C  C  L  *  *  I  K  V  V  Y  C  F  L  *  I  R  </first_frame>
            <second_frame>  I  T  E  P  *  L  I  N  T  F  S  P  Q  I  I  T  *  S  S  *  L  K  G  S  D  L  K  N  *  M  L  V  R  F  L  C  L  T  I  Y  S  *  W  D  R  R  S  L  T  *  Q  T  L  L  *  Y  V  N  N  L  F  Q  R  V  L  I  F  L  I  N  L  F  P  L  W  F  E  H  Q  S  S  C  *  V  W  R  F  G  L  F  C  F  L  L  C  L  Y  *  T  F  I  S  P  P  I  C  N  *  V  G  Q  K  S  E  *  R  N  H  Q  E  S  L  L  E  R  Q  N  P  S  F  *  C  E  N  R  K  T  P  L  F  *  L  S  *  V  V  R  P  L  V  I  L  G  M  Y  F  S  A  S  K  I  L  F  W  K  D  T  I  V  W  E  K  P  *  S  *  M  H  Q  I  L  D  N  L  S  R  L  D  S  G  E  N  M  D  F  F  V  *  G  L  T  C  L  Q  L  S  F  L  L  A  *  L  H  D  *  S  H  S  Y  V  K  I  L  K  Q  Q  S  I  F  L  N  W  Y  I  T  C  V  Y  F  *  H  L  K  *  L  Q  L  S  A  I  N  F  H  P  G  F  T  L  L  V  *  T  *  R  Q  R  K  P  R  D  L  T  T  S  F  A  K  I  V  H  L  K  I  R  R  N  C  *  I  L  M  L  L  Q  D  M  L  I  *  R :   L  S  P  N  A  D  G  G  N  T  Y  L  A  S  G  M  Q  A  N  T  E  A  I  I  T  A  S  E  A  T  I  M  *  T  D  V  N  G  S  D  *  N  F  V  L  P  T  G  L  C  S  L  C  P  Y  M  *  V  E  E  V  F  G  C  V  *  L  F  T  V  G  F  S  S  V  L  *  R  Y  F  L  I  R  A  T  G  V  V  Y  D  K  L  K  *  F  T  V  F  C  K  Y  V </second_frame>
            <third_frame>   S  L  N  H  S  *  L  T  L  S  L  L  K  L  L  L  N  Q  V  N  *  R  V  L  I  *  K  I  E  C  W  *  G  F  C  V  *  Q  Y  I  H  S  G  I  D  E  V  *  H  D  R  L  S  C  S  M  L  T  I  Y  F  R  G  F  *  Y  F  *  S  I  Y  F  H  C  G  L  N  T  R  V  L  V  K  F  G  D  L  V  C  F  V  F  Y  S  A  C  I  E  L  S  S  L  H  L  S  A  T  R  L  G  K  R  A  N  E  E  T  I  R  N  L  C  S  K  D  K  I  R  V  F  N  A  K  T  E  R  R  H  Y  F  S  Y  L  R  L  S  G  L  *  *  Y  *  V  C  T  F  L  H  R  K  S  C  F  G  R  I  P  *  C  G  R  S  L  R  A  E  C  I  R  F  L  I  T  F  P  D  W  I  Q  V  K  I  W  I  F  L  F  K  G  *  H  V  F  S  *  V  F  C  *  H  S  C  M  I  K  A  I  H  M  S  R  F  L  S  N  K  A  F  S  *  T  G  T  S  L  A  S  T  S  N  I  *  N  D  C  N  *  V  Q  S  I  F  I  Q  V  S  P  Y  L  Y  R  H  D  A  R  G  S  Q  E  T  *  P  L  L  L  P  K  L  F  I  *  R  S  E  E  I  A  K  F  S  C  Y  F  K  T  C  *  Y  K   : G  *  V  Q  T  P  T  E  V  I  L  I  W  P  A  V  C  K  Q  T  L  R  Q  L  *  L  H  Q  K  R  Q  S  C  R  L  M  *  T  E  V  T  E  T  L  Y  Y  L  L  V  Y  A  P  C  V  L  I  C  R  S  R  R  C  L  V  V  C  N  Y  L  L  *  V  S  L  L  F  F  D  A  I  F  L  L  E  R  Q  V  L  F  M  I  N  *  S  S  L  L  F  S  V  N  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44791" stop="44477"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPEFLLSLEIWSVLFFTLLVLNFHLSTYLQLGWAKERMKKPSGIFARKTKSEFLMRKQKDAIILAILGCQAFSNIRYVLFCIENLVLEGYHSVGEALELNASDS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44350" stop="44123"/>
                    <exon start="41195" stop="41169"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATKHFPKLVHHLRLLLTSEMTATKCNQFSSRFHPTCIDMTPEEAKRLDHFFCQNCSSEDQKKLLNSHATSRHADIKVESKRRRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44816" stop="44574"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIYFHCGLNTRVLVKFGDLVCFVFYSACIELSSLHLSATRLGKRANEETIRNLCSKDKIRVFNAKTERRHYFSYLRLSGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47165" e_stop="46981"/>
            <exon e_start="46886" e_stop="46541"/>
            <exon e_start="46229" e_stop="46161"/>
            <exon e_start="44258" e_stop="44123"/>
            <exon e_start="41195" e_stop="40896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47165" e_stop="46981" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46886" e_stop="46541" e_length="346"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46229" e_stop="46161" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.880">
            <gDNA_intron_boundary i_start="46160" i_stop="44259" i_length="1902"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44258" e_stop="44123" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41195" e_stop="40896" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47165" stop="46981"/>
              <exon start="46886" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44123"/>
              <exon start="41195" stop="41115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47159" stop="46981"/>
              <exon start="46886" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44123"/>
              <exon start="41195" stop="41040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47154" stop="46981"/>
              <exon start="46886" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44123"/>
              <exon start="41195" stop="40896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47153" stop="46981"/>
              <exon start="46886" stop="46541"/>
              <exon start="46229" stop="46205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47148" stop="46981"/>
              <exon start="46886" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44123"/>
              <exon start="41195" stop="41045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47146" stop="46981"/>
              <exon start="46886" stop="46541"/>
              <exon start="46229" stop="46207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47099" stop="46981"/>
              <exon start="46886" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46764" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44123"/>
              <exon start="41195" stop="41026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46719" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44123"/>
              <exon start="41195" stop="40989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46719" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACATCCTGGCTTGGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG : CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT : GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTG : GTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG : GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTTCTCTTCTGTTCTTTGACGCTATTTTCTTATTAGAGCGACAGGTGTTGTTTATGATAAATTAAAGTAGTTTACTGTTTTCTGTAA</gDNA_template>
            <first_frame> T  H  P  G  L  A  G  F  I  Y  L  S  P  V  C  S  S  C  T  V  C  C  F  R  R  M  T  F  V  V  L  H  T  P  P  S  V  H  G  *  N  S  Y  K  S  S  N  P  R  F  L  H  C  Q  I  H  Q  Q  D  R  S  S :   R  R  L  R  V  D  E  S  V  G  V  V  K  A  V  V  R  C  S  S  *  E  D  *  V  R  Q  *  R  W  Q  R  Q  G  S  R  P  V  V  L  P  S  G  G  V  D  R  R  P  T  S  V  S  R  L  Q  G  T  F  Y  V  R  S  P  R  Y  T  K  C  R  H  N  *  R  Q  V  Y  G  P  H  I  Q  E  L  H  Q  T  R  R  C  W  E  R  R  L  L  L  P  I  *  L  Q  F  F  Y  R  S  I  *  S  *  Q  S  C  C  :  V  L  *  M  *  N  A  I  Q  S  *  *  P  H  G  S  M  *  G  L  Q  *  L  :  V  S  P  Y  L  Y  R  H  D  A  R  G  S  Q  E  T  *  P  L  L  L  P  K  L  F  I  *  R  S  E  E  I  A  K  F  S  C  Y  F  K  T  C  *  Y  K   : G  *  V  Q  T  P  T  E  V  I  L  I  W  P  A  V  C  K  Q  T  L  R  Q  L  *  L  H  Q  K  R  Q  S  C  R  L  M  *  T  E  V  T  E  T  L  Y  Y  L  L  V  Y  A  P  C  V  L  I  C  R  S  R  R  C  L  V  V  C  N  Y  L  L  *  V  S  L  L  F  F  D  A  I  F  L  L  E  R  Q  V  L  F  M  I  N  *  S  S  L  L  F  S  V  </first_frame>
            <second_frame>  H  I  L  A  W  L  D  S  Y  I  S  L  L  F  V  L  P  A  L  F  A  V  S  G  A  *  L  L  *  C  Y  T  L  L  L  Q  S  M  A  K  T  R  T  N  R  R  T  L  D  S  Y  T  V  K  S  I  N  K  T  V  R   : A  G  D  C  V  L  M  R  A  S  E  S  S  K  P  S  Y  V  A  R  V  E  K  I  E  S  D  N  R  G  G  N  V  R  V  H  V  R  W  Y  Y  R  P  E  E  S  I  G  G  R  R  Q  F  H  G  S  K  E  L  F  M  S  D  H  R  D  I  Q  S  A  D  T  I  E  G  K  C  T  V  H  T  F  K  S  Y  T  K  L  D  A  V  G  N  E  D  F  F  C  R  F  D  Y  N  S  S  T  G  A  F  N  P  D  R  V  A  V :   Y  C  K  C  E  M  P  Y  N  P  D  D  L  M  V  Q  C  E  G  C  S  D  W :   F  H  P  T  C  I  D  M  T  P  E  E  A  K  R  L  D  H  F  F  C  Q  N  C  S  S  E  D  Q  K  K  L  L  N  S  H  A  T  S  R  H  A  D  I  K  :  V  E  S  K  R  R  R  R  *  Y  L  F  G  Q  R  Y  A  S  K  H  *  G  N  Y  N  C  I  R  S  D  N  H  V  D  *  C  K  R  K  *  L  K  L  C  I  T  Y  W  F  M  L  L  V  S  L  Y  V  G  R  G  G  V  W  L  C  V  I  I  Y  C  R  F  L  F  C  S  L  T  L  F  S  Y  *  S  D  R  C  C  L  *  *  I  K  V  V  Y  C  F  L  * </second_frame>
            <third_frame>   T  S  W  L  G  W  I  H  I  S  L  S  C  L  F  F  L  H  C  L  L  F  Q  A  H  D  F  C  S  V  T  H  S  S  F  S  P  W  L  K  L  V  Q  I  V  E  P  *  I  L  T  L  S  N  P  S  T  R  P  F  E  :  P  A  T  A  C  *  *  E  R  R  S  R  Q  S  R  R  T  L  L  E  L  R  R  L  S  P  T  I  E  V  A  T  S  G  F  T  S  G  G  T  T  V  R  R  S  R  S  A  A  D  V  S  F  T  A  P  R  N  F  L  C  P  I  T  E  I  Y  K  V  P  T  Q  L  K  A  S  V  R  S  T  H  S  R  A  T  P  N  S  T  L  L  G  T  K  T  S  F  A  D  L  T  T  I  L  L  P  E  H  L  I  L  T  E  L  L   : C  T  V  N  V  K  C  H  T  I  L  M  T  S  W  F  N  V  R  A  A  V  T   : G  F  T  L  L  V  *  T  *  R  Q  R  K  P  R  D  L  T  T  S  F  A  K  I  V  H  L  K  I  R  R  N  C  *  I  L  M  L  L  Q  D  M  L  I  *  R :   L  S  P  N  A  D  G  G  N  T  Y  L  A  S  G  M  Q  A  N  T  E  A  I  I  T  A  S  E  A  T  I  M  *  T  D  V  N  G  S  D  *  N  F  V  L  P  T  G  L  C  S  L  C  P  Y  M  *  V  E  E  V  F  G  C  V  *  L  F  T  V  G  F  S  S  V  L  *  R  Y  F  L  I  R  A  T  G  V  V  Y  D  K  L  K  *  F  T  V  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47077" stop="46981"/>
                    <exon start="46886" stop="46541"/>
                    <exon start="46229" stop="46161"/>
                    <exon start="44258" stop="44123"/>
                    <exon start="41195" stop="41169"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CYTLLLQSMAKTRTNRRTLDSYTVKSINKTVRAGDCVLMRASESSKPSYVARVEKIESDNRGGNVRVHVRWYYRPEESIGGRRQFHGSKELFMSDHRDIQSADTIEGKCTVHTFKSYTKLDAVGNEDFFCRFDYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPTCIDMTPEEAKRLDHFFCQNCSSEDQKKLLNSHATSRHADIKVESKRRRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="47151" e_stop="47151"/>
            <exon e_start="47094" e_stop="46981"/>
            <exon e_start="46886" e_stop="46541"/>
            <exon e_start="46229" e_stop="46161"/>
            <exon e_start="44258" e_stop="44123"/>
            <exon e_start="41195" e_stop="40955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.982"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47151" e_stop="47151" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47150" i_stop="47095" i_length="56"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="47094" e_stop="46981" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46886" e_stop="46541" e_length="346"/>
          </exon>
          <intron i_serial="3" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46229" e_stop="46161" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.880">
            <gDNA_intron_boundary i_start="46160" i_stop="44259" i_length="1902"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44258" e_stop="44123" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44122" i_stop="41196" i_length="2927"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="41195" e_stop="40955" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47151" stop="47151"/>
              <exon start="47094" stop="46981"/>
              <exon start="46886" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44123"/>
              <exon start="41195" stop="40955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46764" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44123"/>
              <exon start="41195" stop="41026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46719" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44123"/>
              <exon start="41195" stop="40989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46719" stop="46541"/>
              <exon start="46229" stop="46161"/>
              <exon start="44258" stop="44160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>G : GCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG : CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT : GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTG : GTTTCACCCTACTTGTATAGACATGACGCCAGAGGAAGCCAAGAGACTTGACCACTTCTTTTGCCAAAATTGTTCATCTGAAGATCAGAAGAAATTGCTAAATTCTCATGCTACTTCAAGACATGCTGATATAAAG : GTTGAGTCCAAACGCCGACGGAGGTAATACTTATTTGGCCAGCGGTATGCAAGCAAACACTGAGGCAATTATAACTGCATCAGAAGCGACAATCATGTAGACTGATGTAAACGGAAGTGACTGAAACTTTGTATTACCTACTGGTTTATGCTCCTTGTGTCCTTATATGTAGGTCGAGGAGGTGTTTGGTTGTGTGTAATTATTTACTGTAGGTTTCTCTTCTGTTCTTTGACGCTATTTT</gDNA_template>
            <first_frame>  : G  A  *  L  L  *  C  Y  T  L  L  L  Q  S  M  A  K  T  R  T  N  R  R  T  L  D  S  Y  T  V  K  S  I  N  K  T  V  R   : A  G  D  C  V  L  M  R  A  S  E  S  S  K  P  S  Y  V  A  R  V  E  K  I  E  S  D  N  R  G  G  N  V  R  V  H  V  R  W  Y  Y  R  P  E  E  S  I  G  G  R  R  Q  F  H  G  S  K  E  L  F  M  S  D  H  R  D  I  Q  S  A  D  T  I  E  G  K  C  T  V  H  T  F  K  S  Y  T  K  L  D  A  V  G  N  E  D  F  F  C  R  F  D  Y  N  S  S  T  G  A  F  N  P  D  R  V  A  V :   Y  C  K  C  E  M  P  Y  N  P  D  D  L  M  V  Q  C  E  G  C  S  D  W :   F  H  P  T  C  I  D  M  T  P  E  E  A  K  R  L  D  H  F  F  C  Q  N  C  S  S  E  D  Q  K  K  L  L  N  S  H  A  T  S  R  H  A  D  I  K  :  V  E  S  K  R  R  R  R  *  Y  L  F  G  Q  R  Y  A  S  K  H  *  G  N  Y  N  C  I  R  S  D  N  H  V  D  *  C  K  R  K  *  L  K  L  C  I  T  Y  W  F  M  L  L  V  S  L  Y  V  G  R  G  G  V  W  L  C  V  I  I  Y  C  R  F  L  F  C  S  L  T  L  F  </first_frame>
            <second_frame>  :  A  H  D  F  C  S  V  T  H  S  S  F  S  P  W  L  K  L  V  Q  I  V  E  P  *  I  L  T  L  S  N  P  S  T  R  P  F  E  :  P  A  T  A  C  *  *  E  R  R  S  R  Q  S  R  R  T  L  L  E  L  R  R  L  S  P  T  I  E  V  A  T  S  G  F  T  S  G  G  T  T  V  R  R  S  R  S  A  A  D  V  S  F  T  A  P  R  N  F  L  C  P  I  T  E  I  Y  K  V  P  T  Q  L  K  A  S  V  R  S  T  H  S  R  A  T  P  N  S  T  L  L  G  T  K  T  S  F  A  D  L  T  T  I  L  L  P  E  H  L  I  L  T  E  L  L   : C  T  V  N  V  K  C  H  T  I  L  M  T  S  W  F  N  V  R  A  A  V  T   : G  F  T  L  L  V  *  T  *  R  Q  R  K  P  R  D  L  T  T  S  F  A  K  I  V  H  L  K  I  R  R  N  C  *  I  L  M  L  L  Q  D  M  L  I  *  R :   L  S  P  N  A  D  G  G  N  T  Y  L  A  S  G  M  Q  A  N  T  E  A  I  I  T  A  S  E  A  T  I  M  *  T  D  V  N  G  S  D  *  N  F  V  L  P  T  G  L  C  S  L  C  P  Y  M  *  V  E  E  V  F  G  C  V  *  L  F  T  V  G  F  S  S  V  L  *  R  Y  F </second_frame>
            <third_frame>  :   R  M  T  F  V  V  L  H  T  P  P  S  V  H  G  *  N  S  Y  K  S  S  N  P  R  F  L  H  C  Q  I  H  Q  Q  D  R  S  S :   R  R  L  R  V  D  E  S  V  G  V  V  K  A  V  V  R  C  S  S  *  E  D  *  V  R  Q  *  R  W  Q  R  Q  G  S  R  P  V  V  L  P  S  G  G  V  D  R  R  P  T  S  V  S  R  L  Q  G  T  F  Y  V  R  S  P  R  Y  T  K  C  R  H  N  *  R  Q  V  Y  G  P  H  I  Q  E  L  H  Q  T  R  R  C  W  E  R  R  L  L  L  P  I  *  L  Q  F  F  Y  R  S  I  *  S  *  Q  S  C  C  :  V  L  *  M  *  N  A  I  Q  S  *  *  P  H  G  S  M  *  G  L  Q  *  L  :  V  S  P  Y  L  Y  R  H  D  A  R  G  S  Q  E  T  *  P  L  L  L  P  K  L  F  I  *  R  S  E  E  I  A  K  F  S  C  Y  F  K  T  C  *  Y  K   : G  *  V  Q  T  P  T  E  V  I  L  I  W  P  A  V  C  K  Q  T  L  R  Q  L  *  L  H  Q  K  R  Q  S  C  R  L  M  *  T  E  V  T  E  T  L  Y  Y  L  L  V  Y  A  P  C  V  L  I  C  R  S  R  R  C  L  V  V  C  N  Y  L  L  *  V  S  L  L  F  F  D  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47077" stop="46981"/>
                    <exon start="46886" stop="46541"/>
                    <exon start="46229" stop="46161"/>
                    <exon start="44258" stop="44123"/>
                    <exon start="41195" stop="41169"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CYTLLLQSMAKTRTNRRTLDSYTVKSINKTVRAGDCVLMRASESSKPSYVARVEKIESDNRGGNVRVHVRWYYRPEESIGGRRQFHGSKELFMSDHRDIQSADTIEGKCTVHTFKSYTKLDAVGNEDFFCRFDYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPTCIDMTPEEAKRLDHFFCQNCSSEDQKKLLNSHATSRHADIKVESKRRRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="47153" e_stop="46981"/>
            <exon e_start="46886" e_stop="46541"/>
            <exon e_start="46229" e_stop="46132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47153" e_stop="46981" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46980" i_stop="46887" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46886" e_stop="46541" e_length="346"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46540" i_stop="46230" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46229" e_stop="46132" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47153" stop="46981"/>
              <exon start="46886" stop="46541"/>
              <exon start="46229" stop="46205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47146" stop="46981"/>
              <exon start="46886" stop="46541"/>
              <exon start="46229" stop="46207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47087" stop="46981"/>
              <exon start="46886" stop="46541"/>
              <exon start="46229" stop="46132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGCTGGATTCATATATCTCTCTCCTGTTTGTTCTTCCTGCACTGTTTGCTGTTTCAGGCGCATGACTTTTGTAGTGTTACACACTCCTCCTTCAGTCCATGGCTAAAACTCGTACAAATCGTCGAACCCTAGATTCTTACACTGTCAAATCCATCAACAAGACCGTTCGAG : CCGGCGACTGCGTGTTGATGAGAGCGTCGGAGTCGTCAAAGCCGTCGTACGTTGCTCGAGTTGAGAAGATTGAGTCCGACAATAGAGGTGGCAACGTCAGGGTTCACGTCCGGTGGTACTACCGTCCGGAGGAGTCGATCGGCGGCCGACGTCAGTTTCACGGCTCCAAGGAACTTTTTATGTCCGATCACCGAGATATACAAAGTGCCGACACAATTGAAGGCAAGTGTACGGTCCACACATTCAAGAGCTACACCAAACTCGACGCTGTTGGGAACGAAGACTTCTTTTGCCGATTTGACTACAATTCTTCTACCGGAGCATTTAATCCTGACAGAGTTGCTGT : GTACTGTAAATGTGAAATGCCATACAATCCTGATGACCTCATGGTTCAATGTGAGGGCTGCAGTGACTGGTAAGTCTGATCCTTCACATTTTTCTCAT</gDNA_template>
            <first_frame> L  A  G  F  I  Y  L  S  P  V  C  S  S  C  T  V  C  C  F  R  R  M  T  F  V  V  L  H  T  P  P  S  V  H  G  *  N  S  Y  K  S  S  N  P  R  F  L  H  C  Q  I  H  Q  Q  D  R  S  S :   R  R  L  R  V  D  E  S  V  G  V  V  K  A  V  V  R  C  S  S  *  E  D  *  V  R  Q  *  R  W  Q  R  Q  G  S  R  P  V  V  L  P  S  G  G  V  D  R  R  P  T  S  V  S  R  L  Q  G  T  F  Y  V  R  S  P  R  Y  T  K  C  R  H  N  *  R  Q  V  Y  G  P  H  I  Q  E  L  H  Q  T  R  R  C  W  E  R  R  L  L  L  P  I  *  L  Q  F  F  Y  R  S  I  *  S  *  Q  S  C  C  :  V  L  *  M  *  N  A  I  Q  S  *  *  P  H  G  S  M  *  G  L  Q  *  L  V  S  L  I  L  H  I  F  L   </first_frame>
            <second_frame>  W  L  D  S  Y  I  S  L  L  F  V  L  P  A  L  F  A  V  S  G  A  *  L  L  *  C  Y  T  L  L  L  Q  S  M  A  K  T  R  T  N  R  R  T  L  D  S  Y  T  V  K  S  I  N  K  T  V  R   : A  G  D  C  V  L  M  R  A  S  E  S  S  K  P  S  Y  V  A  R  V  E  K  I  E  S  D  N  R  G  G  N  V  R  V  H  V  R  W  Y  Y  R  P  E  E  S  I  G  G  R  R  Q  F  H  G  S  K  E  L  F  M  S  D  H  R  D  I  Q  S  A  D  T  I  E  G  K  C  T  V  H  T  F  K  S  Y  T  K  L  D  A  V  G  N  E  D  F  F  C  R  F  D  Y  N  S  S  T  G  A  F  N  P  D  R  V  A  V :   Y  C  K  C  E  M  P  Y  N  P  D  D  L  M  V  Q  C  E  G  C  S  D  W  *  V  *  S  F  T  F  F  S  </second_frame>
            <third_frame>   G  W  I  H  I  S  L  S  C  L  F  F  L  H  C  L  L  F  Q  A  H  D  F  C  S  V  T  H  S  S  F  S  P  W  L  K  L  V  Q  I  V  E  P  *  I  L  T  L  S  N  P  S  T  R  P  F  E  :  P  A  T  A  C  *  *  E  R  R  S  R  Q  S  R  R  T  L  L  E  L  R  R  L  S  P  T  I  E  V  A  T  S  G  F  T  S  G  G  T  T  V  R  R  S  R  S  A  A  D  V  S  F  T  A  P  R  N  F  L  C  P  I  T  E  I  Y  K  V  P  T  Q  L  K  A  S  V  R  S  T  H  S  R  A  T  P  N  S  T  L  L  G  T  K  T  S  F  A  D  L  T  T  I  L  L  P  E  H  L  I  L  T  E  L  L   : C  T  V  N  V  K  C  H  T  I  L  M  T  S  W  F  N  V  R  A  A  V  T  G  K  S  D  P  S  H  F  S  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47077" stop="46981"/>
                    <exon start="46886" stop="46541"/>
                    <exon start="46229" stop="46157"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CYTLLLQSMAKTRTNRRTLDSYTVKSINKTVRAGDCVLMRASESSKPSYVARVEKIESDNRGGNVRVHVRWYYRPEESIGGRRQFHGSKELFMSDHRDIQSADTIEGKCTVHTFKSYTKLDAVGNEDFFCRFDYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46865" stop="46541"/>
                    <exon start="46229" stop="46132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERRSRQSRRTLLELRRLSPTIEVATSGFTSGGTTVRRSRSAADVSFTAPRNFLCPITEIYKVPTQLKASVRSTHSRATPNSTLLGTKTSFADLTTILLPEHLILTELLCTVNVKCHTILMTSWFNVRAAVTGKSDPSHFSH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="50896" PGL_stop="51588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50896" e_stop="51588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="50896" e_stop="51588" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50896" stop="51588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352946" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGGGATGAAGTATTGAAAATAAGAGGTTCATTGCGAGGAACTGGGATATCAAAGGAGCCTGGATGGAGTTCTTTGTGAAATGCATTTTCAGTACAATAAATCCTTGCACCTGCTCTTTACTTGTTGGTGTATGAATGTTCTTCAAGGCAGGGAACATTCAAAGGAGCTGGGAGAGATCAAGGTACTGATGCGATCTGAACTAGACAATTTACTTTGCTGAATTCAGACGTCACTAATTATTCTCTCTTGCGGATGGTTTCAACCACGAAGAATATATAACAAATGTTTTATAAAGATAATGTAGTCATTTTCGTGTATAAACACAGTCAAACACACTAAAATACCATCAGGGAATGGCCTTGGCAAGTGCCGGTGTGTCTCAACAACGTGGATGTACGCCTCTTGCAGTTCCATCAACAATCAACCAAGCACATCTGCAGTGATTTCCTAGTTTAACTTTAGTATAGGGTTCTTCTGTCATCCCATGAACTGGTTCTGCTGGTAAGTATTTCTCAAGAACATGAGATATATACTTCATCAAATAAAAGAAAAATAATACATTTCTCTAAAGGGATTGAGGAGAAAATTTGGATAATTTCATTTTCTTGTTTCCAGTAGGTATTTATTGAAATCATTGAATGGTGATAACTATATCTAACAAAATTAACATTTTTTTGGTTTCCATTGTTCG</gDNA_template>
            <first_frame> N  G  M  K  Y  *  K  *  E  V  H  C  E  E  L  G  Y  Q  R  S  L  D  G  V  L  C  E  M  H  F  Q  Y  N  K  S  L  H  L  L  F  T  C  W  C  M  N  V  L  Q  G  R  E  H  S  K  E  L  G  E  I  K  V  L  M  R  S  E  L  D  N  L  L  C  *  I  Q  T  S  L  I  I  L  S  C  G  W  F  Q  P  R  R  I  Y  N  K  C  F  I  K  I  M  *  S  F  S  C  I  N  T  V  K  H  T  K  I  P  S  G  N  G  L  G  K  C  R  C  V  S  T  T  W  M  Y  A  S  C  S  S  I  N  N  Q  P  S  T  S  A  V  I  S  *  F  N  F  S  I  G  F  F  C  H  P  M  N  W  F  C  W  *  V  F  L  K  N  M  R  Y  I  L  H  Q  I  K  E  K  *  Y  I  S  L  K  G  L  R  R  K  F  G  *  F  H  F  L  V  S  S  R  Y  L  L  K  S  L  N  G  D  N  Y  I  *  Q  N  *  H  F  F  G  F  H  C  S </first_frame>
            <second_frame>  M  G  *  S  I  E  N  K  R  F  I  A  R  N  W  D  I  K  G  A  W  M  E  F  F  V  K  C  I  F  S  T  I  N  P  C  T  C  S  L  L  V  G  V  *  M  F  F  K  A  G  N  I  Q  R  S  W  E  R  S  R  Y  *  C  D  L  N  *  T  I  Y  F  A  E  F  R  R  H  *  L  F  S  L  A  D  G  F  N  H  E  E  Y  I  T  N  V  L  *  R  *  C  S  H  F  R  V  *  T  Q  S  N  T  L  K  Y  H  Q  G  M  A  L  A  S  A  G  V  S  Q  Q  R  G  C  T  P  L  A  V  P  S  T  I  N  Q  A  H  L  Q  *  F  P  S  L  T  L  V  *  G  S  S  V  I  P  *  T  G  S  A  G  K  Y  F  S  R  T  *  D  I  Y  F  I  K  *  K  K  N  N  T  F  L  *  R  D  *  G  E  N  L  D  N  F  I  F  L  F  P  V  G  I  Y  *  N  H  *  M  V  I  T  I  S  N  K  I  N  I  F  L  V  S  I  V   </second_frame>
            <third_frame>   W  D  E  V  L  K  I  R  G  S  L  R  G  T  G  I  S  K  E  P  G  W  S  S  L  *  N  A  F  S  V  Q  *  I  L  A  P  A  L  Y  L  L  V  Y  E  C  S  S  R  Q  G  T  F  K  G  A  G  R  D  Q  G  T  D  A  I  *  T  R  Q  F  T  L  L  N  S  D  V  T  N  Y  S  L  L  R  M  V  S  T  T  K  N  I  *  Q  M  F  Y  K  D  N  V  V  I  F  V  Y  K  H  S  Q  T  H  *  N  T  I  R  E  W  P  W  Q  V  P  V  C  L  N  N  V  D  V  R  L  L  Q  F  H  Q  Q  S  T  K  H  I  C  S  D  F  L  V  *  L  *  Y  R  V  L  L  S  S  H  E  L  V  L  L  V  S  I  S  Q  E  H  E  I  Y  T  S  S  N  K  R  K  I  I  H  F  S  K  G  I  E  E  K  I  W  I  I  S  F  S  C  F  Q  *  V  F  I  E  I  I  E  W  *  *  L  Y  L  T  K  L  T  F  F  W  F  P  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50920" stop="51117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVHCEELGYQRSLDGVLCEMHFQYNKSLHLLFTCWCMNVLQGREHSKELGEIKVLMRSELDNLLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="57614" PGL_stop="51846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56466" e_stop="56370"/>
            <exon e_start="56168" e_stop="56025"/>
            <exon e_start="55794" e_stop="55706"/>
            <exon e_start="55620" e_stop="55515"/>
            <exon e_start="55032" e_stop="54945"/>
            <exon e_start="54849" e_stop="54731"/>
            <exon e_start="54383" e_stop="54219"/>
            <exon e_start="53913" e_stop="53735"/>
            <exon e_start="53660" e_stop="53551"/>
            <exon e_start="53452" e_stop="53343"/>
            <exon e_start="53106" e_stop="52996"/>
            <exon e_start="52920" e_stop="52810"/>
            <exon e_start="52487" e_stop="52285"/>
            <exon e_start="52210" e_stop="51877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="0.959"/>
          <exon-intron don_prob="0.984" acc_prob="0.586" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.000" e_score="0.977"/>
          <exon-intron don_prob="0.949" acc_prob="0.568" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="56466" e_stop="56370" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="56369" i_stop="56169" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56168" e_stop="56025" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.586">
            <gDNA_intron_boundary i_start="56024" i_stop="55795" i_length="230"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55794" e_stop="55706" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55705" i_stop="55621" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55620" e_stop="55515" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55514" i_stop="55033" i_length="482"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55032" e_stop="54945" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.735" acc_prob="0.990">
            <gDNA_intron_boundary i_start="54944" i_stop="54850" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54849" e_stop="54731" e_length="119"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54730" i_stop="54384" i_length="347"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54383" e_stop="54219" e_length="165"/>
          </exon>
          <intron i_serial="7" don_prob="0.950" acc_prob="0.981">
            <gDNA_intron_boundary i_start="54218" i_stop="53914" i_length="305"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="53913" e_stop="53735" e_length="179"/>
          </exon>
          <intron i_serial="8" don_prob="0.947" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53734" i_stop="53661" i_length="74"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53660" e_stop="53551" e_length="110"/>
          </exon>
          <intron i_serial="9" don_prob="0.949" acc_prob="0.568">
            <gDNA_intron_boundary i_start="53550" i_stop="53453" i_length="98"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53452" e_stop="53343" e_length="110"/>
          </exon>
          <intron i_serial="10" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53342" i_stop="53107" i_length="236"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="53106" e_stop="52996" e_length="111"/>
          </exon>
          <intron i_serial="11" don_prob="0.909" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52995" i_stop="52921" i_length="75"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="52920" e_stop="52810" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.930" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52809" i_stop="52488" i_length="322"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="52487" e_stop="52285" e_length="203"/>
          </exon>
          <intron i_serial="13" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52284" i_stop="52211" i_length="74"/>
          </intron>
          <exon e_serial="14" e_score="0.997">
            <gDNA_exon_boundary e_start="52210" e_stop="51877" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56466" stop="56370"/>
              <exon start="56168" stop="56025"/>
              <exon start="55794" stop="55708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277714" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56161" stop="56025"/>
              <exon start="55794" stop="55706"/>
              <exon start="55620" stop="55605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56160" stop="56025"/>
              <exon start="55794" stop="55706"/>
              <exon start="55620" stop="55515"/>
              <exon start="55032" stop="54945"/>
              <exon start="54849" stop="54731"/>
              <exon start="54383" stop="54242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56129" stop="56025"/>
              <exon start="55794" stop="55706"/>
              <exon start="55620" stop="55515"/>
              <exon start="55032" stop="54945"/>
              <exon start="54849" stop="54731"/>
              <exon start="54383" stop="54219"/>
              <exon start="53913" stop="53802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55552" stop="55515"/>
              <exon start="55032" stop="54945"/>
              <exon start="54849" stop="54731"/>
              <exon start="54383" stop="54219"/>
              <exon start="53913" stop="53819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53907" stop="53735"/>
              <exon start="53660" stop="53551"/>
              <exon start="53452" stop="53343"/>
              <exon start="53106" stop="52996"/>
              <exon start="52920" stop="52810"/>
              <exon start="52487" stop="52285"/>
              <exon start="52210" stop="52122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53754" stop="53735"/>
              <exon start="53660" stop="53551"/>
              <exon start="53452" stop="53343"/>
              <exon start="53106" stop="52996"/>
              <exon start="52920" stop="52810"/>
              <exon start="52487" stop="52285"/>
              <exon start="52210" stop="52186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53592" stop="53551"/>
              <exon start="53452" stop="53343"/>
              <exon start="53106" stop="52996"/>
              <exon start="52920" stop="52810"/>
              <exon start="52487" stop="52285"/>
              <exon start="52210" stop="52081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53350" stop="53343"/>
              <exon start="53106" stop="52996"/>
              <exon start="52920" stop="52810"/>
              <exon start="52487" stop="52285"/>
              <exon start="52210" stop="51877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53094" stop="52996"/>
              <exon start="52920" stop="52810"/>
              <exon start="52487" stop="52285"/>
              <exon start="52210" stop="52035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247555" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAGGGAAATGCAAAGATTCACCACGAAAATTGTCCAAATGATGAAGAATGAGAAGCTATTTCAGACCCAAGGTGGTCCTATCATTCTGTCTCAG : ATTGAGAACGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTG : ATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTG : GTTTGATGATTTTGGCGGTCCAGTTCATCATCGACCAGTTGAAGATTTGGCCTTTGCAGTAGCTCGGTTCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATG : TATCACGGGGGAACCAACTTTGGAAGAACAGCTGGAGGGCCTTTTATCACTACCAGCTATGACTATGATGCTCCTATTGATGAATATG : GCTTGATTAGGCAGCCAAAGTATGACCATTTGAAGGAGCTTCATAAGGCTGTCAAGTTATGTGAACCAGCACTAATTTCTGCTGATCCTACCGTTACTGTCTTAGGGAACTATGAACAG : GCACATGTATTTTCTTCCGGCTCTGGACATTGTGCTGCTTTTCTTGCAAATTACCATTTGAGTTCAACTGCAAGGGTGACATTTAGGCACCAACATTACGATCTGCCACCTTGGTCAATAAGCATTCTTCCAGATTGTAAAAATGTTGTATATAATACTGCCAGG : GTTGGAGTCAAGACATCCACTGCACAAATGCTGCCCACAAATGTACAACTGCGCACTTGGGAAACATTTAGCGAAGATGTATCCACCATTGACGCGGATTCAAAGTTCACTGTTGTTGGTCTGTTGGAGCAATTAAATGTTACCAGGGATATGAGTGACTACCTTTGGTACACCACTAG : CGTCGAGATAAATTCAGCTGAATCATTTCTACACCGAGGGCAACATCCTACTCTTGCTGTGCAGTCAGCAGGCCATGCCTTGCACGTTTATGTTAATGGACGGCTTTCAG : GTTCAGTTTATGGAAACCGAGAAAACCGAAGAGTTACATTTACAGGAGGTGTTAACCTGCATGCTGGAATAAACAGAATTTCTCTACTCAGTGTAGCTGTTGGATTGCCG : AACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAG : GTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAG : GTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATG : GTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGGGAACTTGCTGGTAGTTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTCTTGTCAAACGGTCAATTACACATGTATAGATATGATATTATTTAGGTACCACTAATTAGAAAGTAAAGTTTGGTCTCATAGAACGAAATAGTTCAATGAAAAAACTCCTATGCTAGTTTTTTCAGCAATAATTAGCTTATTTGCTTTGCAAAATTATCTTTGTTCAAAATACGGTTGCAATGCCACTGCTTGTCTTCCTCATCAGTGTATATATATTTACAAGTTATTGTTGGAAAAAAGAATTC</gDNA_template>
            <first_frame> A  E  G  N  A  K  I  H  H  E  N  C  P  N  D  E  E  *  E  A  I  S  D  P  R  W  S  Y  H  S  V  S   : D  *  E  R  V  W  V  R  N  K  T  I  W  C  S  R  S  C  I  H  D  L  G  S  *  N  G  C  *  N  G  Y  W  G  P  V  G  H  V  Q  G  G  *  C  P  *  S  S   : D  K  H  L  Q  W  F  L  L  *  L  F  F  P  *  Q  T  *  Q  A  N  N  M  D  R  G  M  E  W  L  :  V  *  *  F  W  R  S  S  S  S  S  T  S  *  R  F  G  L  C  S  S  S  V  H  S  K  R  W  L  F  G  E  L  L  Y   : V  S  R  G  N  Q  L  W  K  N  S  W  R  A  F  Y  H  Y  Q  L  *  L  *  C  S  Y  *  *  I  W :   L  D  *  A  A  K  V  *  P  F  E  G  A  S  *  G  C  Q  V  M  *  T  S  T  N  F  C  *  S  Y  R  Y  C  L  R  E  L  *  T   : G  T  C  I  F  F  R  L  W  T  L  C  C  F  S  C  K  L  P  F  E  F  N  C  K  G  D  I  *  A  P  T  L  R  S  A  T  L  V  N  K  H  S  S  R  L  *  K  C  C  I  *  Y  C  Q   : G  W  S  Q  D  I  H  C  T  N  A  A  H  K  C  T  T  A  H  L  G  N  I  *  R  R  C  I  H  H  *  R  G  F  K  V  H  C  C  W  S  V  G  A  I  K  C  Y  Q  G  Y  E  *  L  P  L  V  H  H  *  :  R  R  D  K  F  S  *  I  I  S  T  P  R  A  T  S  Y  S  C  C  A  V  S  R  P  C  L  A  R  L  C  *  W  T  A  F  R :   F  S  L  W  K  P  R  K  P  K  S  Y  I  Y  R  R  C  *  P  A  C  W  N  K  Q  N  F  S  T  Q  C  S  C  W  I  A   : E  Q  R  S  T  L  *  D  M  E  C  R  S  P  W  A  S  R  S  S  W  A  R  Q  G  S  K  G  L  I  M  A  E  M  V  I  S   : G  G  V  E  R  R  G  H  E  L  G  F  K  C  N  I  C  C  *  M  G  R  R  L  F  D  C  K  T  A  T  T  S  Y  M  V  Q   : G  I  F  Q  C  T  R  R  K  *  S  I  S  T  G  H  G  *  Y  G  K  R  S  S  M  D  Q  W  T  E  H  W  K  I  L  D  R  L  C  H  W  *  L  Q  S  L  Y  L  C  S  Y  I  Q  T  R  K  V  P  I  W  L  R  P  A  N  S  K  M  :  V  P  R  S  S  I  L  V  E  A  N  W  E  L  A  G  S  F  *  G  D  R  W  G  C  I  K  D  F  S  C  Q  T  V  N  Y  T  C  I  D  M  I  L  F  R  Y  H  *  L  E  S  K  V  W  S  H  R  T  K  *  F  N  E  K  T  P  M  L  V  F  S  A  I  I  S  L  F  A  L  Q  N  Y  L  C  S  K  Y  G  C  N  A  T  A  C  L  P  H  Q  C  I  Y  I  Y  K  L  L  L  E  K  R  I  </first_frame>
            <second_frame>  Q  R  E  M  Q  R  F  T  T  K  I  V  Q  M  M  K  N  E  K  L  F  Q  T  Q  G  G  P  I  I  L  S  Q  :  I  E  N  E  Y  G  L  E  I  K  Q  Y  G  A  P  G  H  A  Y  M  T  W  A  A  K  M  A  V  E  M  G  T  G  V  P  W  V  M  C  K  E  D  D  A  P  D  P  V  :  I  N  T  C  N  G  F  Y  C  D  Y  F  S  P  N  K  P  N  K  P  T  I  W  T  E  A  W  S  G  W :   F  D  D  F  G  G  P  V  H  H  R  P  V  E  D  L  A  F  A  V  A  R  F  I  Q  K  G  G  S  L  V  N  Y  Y  M  :  Y  H  G  G  T  N  F  G  R  T  A  G  G  P  F  I  T  T  S  Y  D  Y  D  A  P  I  D  E  Y   : G  L  I  R  Q  P  K  Y  D  H  L  K  E  L  H  K  A  V  K  L  C  E  P  A  L  I  S  A  D  P  T  V  T  V  L  G  N  Y  E  Q  :  A  H  V  F  S  S  G  S  G  H  C  A  A  F  L  A  N  Y  H  L  S  S  T  A  R  V  T  F  R  H  Q  H  Y  D  L  P  P  W  S  I  S  I  L  P  D  C  K  N  V  V  Y  N  T  A  R  :  V  G  V  K  T  S  T  A  Q  M  L  P  T  N  V  Q  L  R  T  W  E  T  F  S  E  D  V  S  T  I  D  A  D  S  K  F  T  V  V  G  L  L  E  Q  L  N  V  T  R  D  M  S  D  Y  L  W  Y  T  T  S :   V  E  I  N  S  A  E  S  F  L  H  R  G  Q  H  P  T  L  A  V  Q  S  A  G  H  A  L  H  V  Y  V  N  G  R  L  S   : G  S  V  Y  G  N  R  E  N  R  R  V  T  F  T  G  G  V  N  L  H  A  G  I  N  R  I  S  L  L  S  V  A  V  G  L  P  :  N  N  G  A  R  Y  E  T  W  S  A  G  V  L  G  P  V  V  L  H  G  L  D  K  G  Q  R  D  L  S  W  Q  K  W  S  Y  Q  :  V  G  L  R  G  E  A  M  N  L  A  S  N  A  I  S  A  A  E  W  V  G  G  S  L  I  A  R  Q  R  Q  P  L  T  W  Y  K  :  V  Y  F  N  A  P  G  G  S  D  P  L  A  L  D  M  G  S  M  G  K  G  Q  V  W  I  N  G  Q  S  I  G  R  Y  W  T  A  Y  A  T  G  N  C  S  P  C  T  Y  A  A  T  Y  R  Q  G  K  C  Q  S  G  C  G  Q  P  T  Q  R  W :   Y  H  V  P  R  S  W  L  K  P  T  G  N  L  L  V  V  F  E  E  I  G  G  D  A  S  K  I  S  L  V  K  R  S  I  T  H  V  *  I  *  Y  Y  L  G  T  T  N  *  K  V  K  F  G  L  I  E  R  N  S  S  M  K  K  L  L  C  *  F  F  Q  Q  *  L  A  Y  L  L  C  K  I  I  F  V  Q  N  T  V  A  M  P  L  L  V  F  L  I  S  V  Y  I  F  T  S  Y  C  W  K  K  E  F </second_frame>
            <third_frame>   R  G  K  C  K  D  S  P  R  K  L  S  K  *  *  R  M  R  S  Y  F  R  P  K  V  V  L  S  F  C  L  R :   L  R  T  S  M  G  *  K  *  N  N  M  V  L  Q  V  M  H  T  *  L  G  Q  L  K  W  L  L  K  W  V  L  G  S  R  G  S  C  A  R  R  M  M  P  L  I  Q  * :   *  T  P  A  M  V  F  I  V  I  I  F  P  L  T  N  L  T  S  Q  Q  Y  G  Q  R  H  G  V  A   : G  L  M  I  L  A  V  Q  F  I  I  D  Q  L  K  I  W  P  L  Q  *  L  G  S  F  K  K  V  A  L  W  *  I  I  I  C :   I  T  G  E  P  T  L  E  E  Q  L  E  G  L  L  S  L  P  A  M  T  M  M  L  L  L  M  N  M  :  A  *  L  G  S  Q  S  M  T  I  *  R  S  F  I  R  L  S  S  Y  V  N  Q  H  *  F  L  L  I  L  P  L  L  S  *  G  T  M  N  R :   H  M  Y  F  L  P  A  L  D  I  V  L  L  F  L  Q  I  T  I  *  V  Q  L  Q  G  *  H  L  G  T  N  I  T  I  C  H  L  G  Q  *  A  F  F  Q  I  V  K  M  L  Y  I  I  L  P  G :   L  E  S  R  H  P  L  H  K  C  C  P  Q  M  Y  N  C  A  L  G  K  H  L  A  K  M  Y  P  P  L  T  R  I  Q  S  S  L  L  L  V  C  W  S  N  *  M  L  P  G  I  *  V  T  T  F  G  T  P  L   : A  S  R  *  I  Q  L  N  H  F  Y  T  E  G  N  I  L  L  L  L  C  S  Q  Q  A  M  P  C  T  F  M  L  M  D  G  F  Q  :  V  Q  F  M  E  T  E  K  T  E  E  L  H  L  Q  E  V  L  T  C  M  L  E  *  T  E  F  L  Y  S  V  *  L  L  D  C  R :   T  T  E  H  V  M  R  H  G  V  Q  E  S  L  G  Q  S  F  F  M  G  *  T  R  V  K  G  T  Y  H  G  R  N  G  H  I  R :   W  G  *  E  A  R  P  *  T  W  L  Q  M  Q  Y  L  L  L  N  G  *  E  A  L  *  L  Q  D  S  D  N  L  L  H  G  T  R :   Y  I  S  M  H  Q  E  E  V  I  H  *  H  W  T  W  V  V  W  E  K  V  K  Y  G  S  M  D  R  A  L  E  D  T  G  P  L  M  P  L  V  T  A  V  L  V  L  M  Q  L  H  T  D  K  E  S  A  N  L  V  A  A  S  Q  L  K  D   : G  T  T  F  L  D  L  G  *  S  Q  L  G  T  C  W  *  F  L  R  R  *  V  G  M  H  Q  R  F  L  L  S  N  G  Q  L  H  M  Y  R  Y  D  I  I  *  V  P  L  I  R  K  *  S  L  V  S  *  N  E  I  V  Q  *  K  N  S  Y  A  S  F  F  S  N  N  *  L  I  C  F  A  K  L  S  L  F  K  I  R  L  Q  C  H  C  L  S  S  S  S  V  Y  I  Y  L  Q  V  I  V  G  K  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56465" stop="56370"/>
                    <exon start="56168" stop="56025"/>
                    <exon start="55794" stop="55706"/>
                    <exon start="55620" stop="55515"/>
                    <exon start="55032" stop="54945"/>
                    <exon start="54849" stop="54731"/>
                    <exon start="54383" stop="54219"/>
                    <exon start="53913" stop="53735"/>
                    <exon start="53660" stop="53551"/>
                    <exon start="53452" stop="53343"/>
                    <exon start="53106" stop="52996"/>
                    <exon start="52920" stop="52810"/>
                    <exon start="52487" stop="52285"/>
                    <exon start="52210" stop="52093"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1746</number_coding_nucleotides>
                  <number_encoded_amino_acids>582</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QREMQRFTTKIVQMMKNEKLFQTQGGPIILSQIENEYGLEIKQYGAPGHAYMTWAAKMAVEMGTGVPWVMCKEDDAPDPVINTCNGFYCDYFSPNKPNKPTIWTEAWSGWFDDFGGPVHHRPVEDLAFAVARFIQKGGSLVNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLIRQPKYDHLKELHKAVKLCEPALISADPTVTVLGNYEQAHVFSSGSGHCAAFLANYHLSSTARVTFRHQHYDLPPWSISILPDCKNVVYNTARVGVKTSTAQMLPTNVQLRTWETFSEDVSTIDADSKFTVVGLLEQLNVTRDMSDYLWYTTSVEINSAESFLHRGQHPTLAVQSAGHALHVYVNGRLSGSVYGNRENRRVTFTGGVNLHAGINRISLLSVAVGLPNNGARYETWSAGVLGPVVLHGLDKGQRDLSWQKWSYQVGLRGEAMNLASNAISAAEWVGGSLIARQRQPLTWYKVYFNAPGGSDPLALDMGSMGKGQVWINGQSIGRYWTAYATGNCSPCTYAATYRQGKCQSGCGQPTQRWYHVPRSWLKPTGNLLVVFEEIGGDASKISLVKRSITHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57459" e_stop="57368"/>
            <exon e_start="57210" e_stop="57098"/>
            <exon e_start="56993" e_stop="56927"/>
            <exon e_start="56462" e_stop="56370"/>
            <exon e_start="56168" e_stop="56025"/>
            <exon e_start="55794" e_stop="55706"/>
            <exon e_start="55620" e_stop="55515"/>
            <exon e_start="55032" e_stop="54945"/>
            <exon e_start="54849" e_stop="54731"/>
            <exon e_start="54383" e_stop="54219"/>
            <exon e_start="53913" e_stop="53735"/>
            <exon e_start="53660" e_stop="53551"/>
            <exon e_start="53452" e_stop="53343"/>
            <exon e_start="53106" e_stop="52996"/>
            <exon e_start="52920" e_stop="52810"/>
            <exon e_start="52487" e_stop="52285"/>
            <exon e_start="52210" e_stop="51877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.938" e_score="0.978"/>
          <exon-intron don_prob="0.869" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.586" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.000" e_score="0.977"/>
          <exon-intron don_prob="0.949" acc_prob="0.568" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="57459" e_stop="57368" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.938">
            <gDNA_intron_boundary i_start="57367" i_stop="57211" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57210" e_stop="57098" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.869" acc_prob="0.985">
            <gDNA_intron_boundary i_start="57097" i_stop="56994" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56993" e_stop="56927" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.911" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56926" i_stop="56463" i_length="464"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56462" e_stop="56370" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="56369" i_stop="56169" i_length="201"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56168" e_stop="56025" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.586">
            <gDNA_intron_boundary i_start="56024" i_stop="55795" i_length="230"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55794" e_stop="55706" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55705" i_stop="55621" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55620" e_stop="55515" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55514" i_stop="55033" i_length="482"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55032" e_stop="54945" e_length="88"/>
          </exon>
          <intron i_serial="8" don_prob="0.735" acc_prob="0.990">
            <gDNA_intron_boundary i_start="54944" i_stop="54850" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54849" e_stop="54731" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54730" i_stop="54384" i_length="347"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="54383" e_stop="54219" e_length="165"/>
          </exon>
          <intron i_serial="10" don_prob="0.950" acc_prob="0.981">
            <gDNA_intron_boundary i_start="54218" i_stop="53914" i_length="305"/>
          </intron>
          <exon e_serial="11" e_score="0.977">
            <gDNA_exon_boundary e_start="53913" e_stop="53735" e_length="179"/>
          </exon>
          <intron i_serial="11" don_prob="0.947" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53734" i_stop="53661" i_length="74"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="53660" e_stop="53551" e_length="110"/>
          </exon>
          <intron i_serial="12" don_prob="0.949" acc_prob="0.568">
            <gDNA_intron_boundary i_start="53550" i_stop="53453" i_length="98"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="53452" e_stop="53343" e_length="110"/>
          </exon>
          <intron i_serial="13" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53342" i_stop="53107" i_length="236"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="53106" e_stop="52996" e_length="111"/>
          </exon>
          <intron i_serial="14" don_prob="0.909" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52995" i_stop="52921" i_length="75"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="52920" e_stop="52810" e_length="111"/>
          </exon>
          <intron i_serial="15" don_prob="0.930" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52809" i_stop="52488" i_length="322"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="52487" e_stop="52285" e_length="203"/>
          </exon>
          <intron i_serial="16" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52284" i_stop="52211" i_length="74"/>
          </intron>
          <exon e_serial="17" e_score="0.997">
            <gDNA_exon_boundary e_start="52210" e_stop="51877" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57459" stop="57368"/>
              <exon start="57210" stop="57098"/>
              <exon start="56993" stop="56927"/>
              <exon start="56462" stop="56370"/>
              <exon start="56168" stop="56025"/>
              <exon start="55794" stop="55706"/>
              <exon start="55620" stop="55515"/>
              <exon start="55032" stop="54945"/>
              <exon start="54849" stop="54738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56161" stop="56025"/>
              <exon start="55794" stop="55706"/>
              <exon start="55620" stop="55605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56160" stop="56025"/>
              <exon start="55794" stop="55706"/>
              <exon start="55620" stop="55515"/>
              <exon start="55032" stop="54945"/>
              <exon start="54849" stop="54731"/>
              <exon start="54383" stop="54242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56129" stop="56025"/>
              <exon start="55794" stop="55706"/>
              <exon start="55620" stop="55515"/>
              <exon start="55032" stop="54945"/>
              <exon start="54849" stop="54731"/>
              <exon start="54383" stop="54219"/>
              <exon start="53913" stop="53802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55552" stop="55515"/>
              <exon start="55032" stop="54945"/>
              <exon start="54849" stop="54731"/>
              <exon start="54383" stop="54219"/>
              <exon start="53913" stop="53819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53907" stop="53735"/>
              <exon start="53660" stop="53551"/>
              <exon start="53452" stop="53343"/>
              <exon start="53106" stop="52996"/>
              <exon start="52920" stop="52810"/>
              <exon start="52487" stop="52285"/>
              <exon start="52210" stop="52122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53754" stop="53735"/>
              <exon start="53660" stop="53551"/>
              <exon start="53452" stop="53343"/>
              <exon start="53106" stop="52996"/>
              <exon start="52920" stop="52810"/>
              <exon start="52487" stop="52285"/>
              <exon start="52210" stop="52186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53592" stop="53551"/>
              <exon start="53452" stop="53343"/>
              <exon start="53106" stop="52996"/>
              <exon start="52920" stop="52810"/>
              <exon start="52487" stop="52285"/>
              <exon start="52210" stop="52081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53350" stop="53343"/>
              <exon start="53106" stop="52996"/>
              <exon start="52920" stop="52810"/>
              <exon start="52487" stop="52285"/>
              <exon start="52210" stop="51877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53094" stop="52996"/>
              <exon start="52920" stop="52810"/>
              <exon start="52487" stop="52285"/>
              <exon start="52210" stop="52035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247555" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGAGGGCATTATACAGAAGGCAAAAGATGGAGGATTGGATGTTATAGAAACCTATGTGTTTTGGAATCTTCATGAACCTTCACCTGGCAAT : TACAACTTTGAGGGGCGTAATGATTTAGTTCGATTCATAAAGCTGATTCAGAAGGCAGGGCTTTATATGCATCTTCGAATTGGGCCTTATATTTGTGGAGAGTGGAATTTTGG : TGGTTTTCCTGTATGGTTGAAGTATGTTCCTGGAATCAGCTTTAGAACCAATAATGAACCTTTCAAG : AGGGAAATGCAAAGATTCACCACGAAAATTGTCCAAATGATGAAGAATGAGAAGCTATTTCAGACCCAAGGTGGTCCTATCATTCTGTCTCAG : ATTGAGAACGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTG : ATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTG : GTTTGATGATTTTGGCGGTCCAGTTCATCATCGACCAGTTGAAGATTTGGCCTTTGCAGTAGCTCGGTTCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATG : TATCACGGGGGAACCAACTTTGGAAGAACAGCTGGAGGGCCTTTTATCACTACCAGCTATGACTATGATGCTCCTATTGATGAATATG : GCTTGATTAGGCAGCCAAAGTATGACCATTTGAAGGAGCTTCATAAGGCTGTCAAGTTATGTGAACCAGCACTAATTTCTGCTGATCCTACCGTTACTGTCTTAGGGAACTATGAACAG : GCACATGTATTTTCTTCCGGCTCTGGACATTGTGCTGCTTTTCTTGCAAATTACCATTTGAGTTCAACTGCAAGGGTGACATTTAGGCACCAACATTACGATCTGCCACCTTGGTCAATAAGCATTCTTCCAGATTGTAAAAATGTTGTATATAATACTGCCAGG : GTTGGAGTCAAGACATCCACTGCACAAATGCTGCCCACAAATGTACAACTGCGCACTTGGGAAACATTTAGCGAAGATGTATCCACCATTGACGCGGATTCAAAGTTCACTGTTGTTGGTCTGTTGGAGCAATTAAATGTTACCAGGGATATGAGTGACTACCTTTGGTACACCACTAG : CGTCGAGATAAATTCAGCTGAATCATTTCTACACCGAGGGCAACATCCTACTCTTGCTGTGCAGTCAGCAGGCCATGCCTTGCACGTTTATGTTAATGGACGGCTTTCAG : GTTCAGTTTATGGAAACCGAGAAAACCGAAGAGTTACATTTACAGGAGGTGTTAACCTGCATGCTGGAATAAACAGAATTTCTCTACTCAGTGTAGCTGTTGGATTGCCG : AACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAG : GTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAG : GTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATG : GTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGGGAACTTGCTGGTAGTTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTCTTGTCAAACGGTCAATTACACATGTATAGATATGATATTATTTAGGTACCACTAATTAGAAAGTAAAGTTTGGTCTCATAGAACGAAATAGTTCAATGAAAAAACTCCTATGCTAGTTTTTTCAGCAATAATTAGCTTATTTGCTTTGCAAAATTATCTTTGTTCAAAATACGGTTGCAATGCCACTGCTTGTCTTCCTCATCAGTGTATATATATTTACAAGTTATTGTTGGAAAAAAGAATTC</gDNA_template>
            <first_frame> G  R  A  L  Y  R  R  Q  K  M  E  D  W  M  L  *  K  P  M  C  F  G  I  F  M  N  L  H  L  A  I :   T  T  L  R  G  V  M  I  *  F  D  S  *  S  *  F  R  R  Q  G  F  I  C  I  F  E  L  G  L  I  F  V  E  S  G  I  L   : V  V  F  L  Y  G  *  S  M  F  L  E  S  A  L  E  P  I  M  N  L  S  R :   G  K  C  K  D  S  P  R  K  L  S  K  *  *  R  M  R  S  Y  F  R  P  K  V  V  L  S  F  C  L  R :   L  R  T  S  M  G  *  K  *  N  N  M  V  L  Q  V  M  H  T  *  L  G  Q  L  K  W  L  L  K  W  V  L  G  S  R  G  S  C  A  R  R  M  M  P  L  I  Q  * :   *  T  P  A  M  V  F  I  V  I  I  F  P  L  T  N  L  T  S  Q  Q  Y  G  Q  R  H  G  V  A   : G  L  M  I  L  A  V  Q  F  I  I  D  Q  L  K  I  W  P  L  Q  *  L  G  S  F  K  K  V  A  L  W  *  I  I  I  C :   I  T  G  E  P  T  L  E  E  Q  L  E  G  L  L  S  L  P  A  M  T  M  M  L  L  L  M  N  M  :  A  *  L  G  S  Q  S  M  T  I  *  R  S  F  I  R  L  S  S  Y  V  N  Q  H  *  F  L  L  I  L  P  L  L  S  *  G  T  M  N  R :   H  M  Y  F  L  P  A  L  D  I  V  L  L  F  L  Q  I  T  I  *  V  Q  L  Q  G  *  H  L  G  T  N  I  T  I  C  H  L  G  Q  *  A  F  F  Q  I  V  K  M  L  Y  I  I  L  P  G :   L  E  S  R  H  P  L  H  K  C  C  P  Q  M  Y  N  C  A  L  G  K  H  L  A  K  M  Y  P  P  L  T  R  I  Q  S  S  L  L  L  V  C  W  S  N  *  M  L  P  G  I  *  V  T  T  F  G  T  P  L   : A  S  R  *  I  Q  L  N  H  F  Y  T  E  G  N  I  L  L  L  L  C  S  Q  Q  A  M  P  C  T  F  M  L  M  D  G  F  Q  :  V  Q  F  M  E  T  E  K  T  E  E  L  H  L  Q  E  V  L  T  C  M  L  E  *  T  E  F  L  Y  S  V  *  L  L  D  C  R :   T  T  E  H  V  M  R  H  G  V  Q  E  S  L  G  Q  S  F  F  M  G  *  T  R  V  K  G  T  Y  H  G  R  N  G  H  I  R :   W  G  *  E  A  R  P  *  T  W  L  Q  M  Q  Y  L  L  L  N  G  *  E  A  L  *  L  Q  D  S  D  N  L  L  H  G  T  R :   Y  I  S  M  H  Q  E  E  V  I  H  *  H  W  T  W  V  V  W  E  K  V  K  Y  G  S  M  D  R  A  L  E  D  T  G  P  L  M  P  L  V  T  A  V  L  V  L  M  Q  L  H  T  D  K  E  S  A  N  L  V  A  A  S  Q  L  K  D   : G  T  T  F  L  D  L  G  *  S  Q  L  G  T  C  W  *  F  L  R  R  *  V  G  M  H  Q  R  F  L  L  S  N  G  Q  L  H  M  Y  R  Y  D  I  I  *  V  P  L  I  R  K  *  S  L  V  S  *  N  E  I  V  Q  *  K  N  S  Y  A  S  F  F  S  N  N  *  L  I  C  F  A  K  L  S  L  F  K  I  R  L  Q  C  H  C  L  S  S  S  S  V  Y  I  Y  L  Q  V  I  V  G  K  K  N   </first_frame>
            <second_frame>  G  G  H  Y  T  E  G  K  R  W  R  I  G  C  Y  R  N  L  C  V  L  E  S  S  *  T  F  T  W  Q   : L  Q  L  *  G  A  *  *  F  S  S  I  H  K  A  D  S  E  G  R  A  L  Y  A  S  S  N  W  A  L  Y  L  W  R  V  E  F  W  :  W  F  S  C  M  V  E  V  C  S  W  N  Q  L  *  N  Q  *  *  T  F  Q   : E  G  N  A  K  I  H  H  E  N  C  P  N  D  E  E  *  E  A  I  S  D  P  R  W  S  Y  H  S  V  S   : D  *  E  R  V  W  V  R  N  K  T  I  W  C  S  R  S  C  I  H  D  L  G  S  *  N  G  C  *  N  G  Y  W  G  P  V  G  H  V  Q  G  G  *  C  P  *  S  S   : D  K  H  L  Q  W  F  L  L  *  L  F  F  P  *  Q  T  *  Q  A  N  N  M  D  R  G  M  E  W  L  :  V  *  *  F  W  R  S  S  S  S  S  T  S  *  R  F  G  L  C  S  S  S  V  H  S  K  R  W  L  F  G  E  L  L  Y   : V  S  R  G  N  Q  L  W  K  N  S  W  R  A  F  Y  H  Y  Q  L  *  L  *  C  S  Y  *  *  I  W :   L  D  *  A  A  K  V  *  P  F  E  G  A  S  *  G  C  Q  V  M  *  T  S  T  N  F  C  *  S  Y  R  Y  C  L  R  E  L  *  T   : G  T  C  I  F  F  R  L  W  T  L  C  C  F  S  C  K  L  P  F  E  F  N  C  K  G  D  I  *  A  P  T  L  R  S  A  T  L  V  N  K  H  S  S  R  L  *  K  C  C  I  *  Y  C  Q   : G  W  S  Q  D  I  H  C  T  N  A  A  H  K  C  T  T  A  H  L  G  N  I  *  R  R  C  I  H  H  *  R  G  F  K  V  H  C  C  W  S  V  G  A  I  K  C  Y  Q  G  Y  E  *  L  P  L  V  H  H  *  :  R  R  D  K  F  S  *  I  I  S  T  P  R  A  T  S  Y  S  C  C  A  V  S  R  P  C  L  A  R  L  C  *  W  T  A  F  R :   F  S  L  W  K  P  R  K  P  K  S  Y  I  Y  R  R  C  *  P  A  C  W  N  K  Q  N  F  S  T  Q  C  S  C  W  I  A   : E  Q  R  S  T  L  *  D  M  E  C  R  S  P  W  A  S  R  S  S  W  A  R  Q  G  S  K  G  L  I  M  A  E  M  V  I  S   : G  G  V  E  R  R  G  H  E  L  G  F  K  C  N  I  C  C  *  M  G  R  R  L  F  D  C  K  T  A  T  T  S  Y  M  V  Q   : G  I  F  Q  C  T  R  R  K  *  S  I  S  T  G  H  G  *  Y  G  K  R  S  S  M  D  Q  W  T  E  H  W  K  I  L  D  R  L  C  H  W  *  L  Q  S  L  Y  L  C  S  Y  I  Q  T  R  K  V  P  I  W  L  R  P  A  N  S  K  M  :  V  P  R  S  S  I  L  V  E  A  N  W  E  L  A  G  S  F  *  G  D  R  W  G  C  I  K  D  F  S  C  Q  T  V  N  Y  T  C  I  D  M  I  L  F  R  Y  H  *  L  E  S  K  V  W  S  H  R  T  K  *  F  N  E  K  T  P  M  L  V  F  S  A  I  I  S  L  F  A  L  Q  N  Y  L  C  S  K  Y  G  C  N  A  T  A  C  L  P  H  Q  C  I  Y  I  Y  K  L  L  L  E  K  R  I  </second_frame>
            <third_frame>   E  G  I  I  Q  K  A  K  D  G  G  L  D  V  I  E  T  Y  V  F  W  N  L  H  E  P  S  P  G  N  :  Y  N  F  E  G  R  N  D  L  V  R  F  I  K  L  I  Q  K  A  G  L  Y  M  H  L  R  I  G  P  Y  I  C  G  E  W  N  F  G :   G  F  P  V  W  L  K  Y  V  P  G  I  S  F  R  T  N  N  E  P  F  K  :  R  E  M  Q  R  F  T  T  K  I  V  Q  M  M  K  N  E  K  L  F  Q  T  Q  G  G  P  I  I  L  S  Q  :  I  E  N  E  Y  G  L  E  I  K  Q  Y  G  A  P  G  H  A  Y  M  T  W  A  A  K  M  A  V  E  M  G  T  G  V  P  W  V  M  C  K  E  D  D  A  P  D  P  V  :  I  N  T  C  N  G  F  Y  C  D  Y  F  S  P  N  K  P  N  K  P  T  I  W  T  E  A  W  S  G  W :   F  D  D  F  G  G  P  V  H  H  R  P  V  E  D  L  A  F  A  V  A  R  F  I  Q  K  G  G  S  L  V  N  Y  Y  M  :  Y  H  G  G  T  N  F  G  R  T  A  G  G  P  F  I  T  T  S  Y  D  Y  D  A  P  I  D  E  Y   : G  L  I  R  Q  P  K  Y  D  H  L  K  E  L  H  K  A  V  K  L  C  E  P  A  L  I  S  A  D  P  T  V  T  V  L  G  N  Y  E  Q  :  A  H  V  F  S  S  G  S  G  H  C  A  A  F  L  A  N  Y  H  L  S  S  T  A  R  V  T  F  R  H  Q  H  Y  D  L  P  P  W  S  I  S  I  L  P  D  C  K  N  V  V  Y  N  T  A  R  :  V  G  V  K  T  S  T  A  Q  M  L  P  T  N  V  Q  L  R  T  W  E  T  F  S  E  D  V  S  T  I  D  A  D  S  K  F  T  V  V  G  L  L  E  Q  L  N  V  T  R  D  M  S  D  Y  L  W  Y  T  T  S :   V  E  I  N  S  A  E  S  F  L  H  R  G  Q  H  P  T  L  A  V  Q  S  A  G  H  A  L  H  V  Y  V  N  G  R  L  S   : G  S  V  Y  G  N  R  E  N  R  R  V  T  F  T  G  G  V  N  L  H  A  G  I  N  R  I  S  L  L  S  V  A  V  G  L  P  :  N  N  G  A  R  Y  E  T  W  S  A  G  V  L  G  P  V  V  L  H  G  L  D  K  G  Q  R  D  L  S  W  Q  K  W  S  Y  Q  :  V  G  L  R  G  E  A  M  N  L  A  S  N  A  I  S  A  A  E  W  V  G  G  S  L  I  A  R  Q  R  Q  P  L  T  W  Y  K  :  V  Y  F  N  A  P  G  G  S  D  P  L  A  L  D  M  G  S  M  G  K  G  Q  V  W  I  N  G  Q  S  I  G  R  Y  W  T  A  Y  A  T  G  N  C  S  P  C  T  Y  A  A  T  Y  R  Q  G  K  C  Q  S  G  C  G  Q  P  T  Q  R  W :   Y  H  V  P  R  S  W  L  K  P  T  G  N  L  L  V  V  F  E  E  I  G  G  D  A  S  K  I  S  L  V  K  R  S  I  T  H  V  *  I  *  Y  Y  L  G  T  T  N  *  K  V  K  F  G  L  I  E  R  N  S  S  M  K  K  L  L  C  *  F  F  Q  Q  *  L  A  Y  L  L  C  K  I  I  F  V  Q  N  T  V  A  M  P  L  L  V  F  L  I  S  V  Y  I  F  T  S  Y  C  W  K  K  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57457" stop="57368"/>
                    <exon start="57210" stop="57098"/>
                    <exon start="56993" stop="56927"/>
                    <exon start="56462" stop="56370"/>
                    <exon start="56168" stop="56025"/>
                    <exon start="55794" stop="55706"/>
                    <exon start="55620" stop="55515"/>
                    <exon start="55032" stop="54945"/>
                    <exon start="54849" stop="54731"/>
                    <exon start="54383" stop="54219"/>
                    <exon start="53913" stop="53735"/>
                    <exon start="53660" stop="53551"/>
                    <exon start="53452" stop="53343"/>
                    <exon start="53106" stop="52996"/>
                    <exon start="52920" stop="52810"/>
                    <exon start="52487" stop="52285"/>
                    <exon start="52210" stop="52093"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2013</number_coding_nucleotides>
                  <number_encoded_amino_acids>671</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGIIQKAKDGGLDVIETYVFWNLHEPSPGNYNFEGRNDLVRFIKLIQKAGLYMHLRIGPYICGEWNFGGFPVWLKYVPGISFRTNNEPFKREMQRFTTKIVQMMKNEKLFQTQGGPIILSQIENEYGLEIKQYGAPGHAYMTWAAKMAVEMGTGVPWVMCKEDDAPDPVINTCNGFYCDYFSPNKPNKPTIWTEAWSGWFDDFGGPVHHRPVEDLAFAVARFIQKGGSLVNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLIRQPKYDHLKELHKAVKLCEPALISADPTVTVLGNYEQAHVFSSGSGHCAAFLANYHLSSTARVTFRHQHYDLPPWSISILPDCKNVVYNTARVGVKTSTAQMLPTNVQLRTWETFSEDVSTIDADSKFTVVGLLEQLNVTRDMSDYLWYTTSVEINSAESFLHRGQHPTLAVQSAGHALHVYVNGRLSGSVYGNRENRRVTFTGGVNLHAGINRISLLSVAVGLPNNGARYETWSAGVLGPVVLHGLDKGQRDLSWQKWSYQVGLRGEAMNLASNAISAAEWVGGSLIARQRQPLTWYKVYFNAPGGSDPLALDMGSMGKGQVWINGQSIGRYWTAYATGNCSPCTYAATYRQGKCQSGCGQPTQRWYHVPRSWLKPTGNLLVVFEEIGGDASKISLVKRSITHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="57614" e_stop="57537"/>
            <exon e_start="57463" e_stop="57368"/>
            <exon e_start="57210" e_stop="57098"/>
            <exon e_start="56993" e_stop="56927"/>
            <exon e_start="56462" e_stop="56370"/>
            <exon e_start="56168" e_stop="56025"/>
            <exon e_start="55794" e_stop="55706"/>
            <exon e_start="55620" e_stop="55439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="0.974"/>
          <exon-intron don_prob="0.962" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.586" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="57614" e_stop="57537" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57536" i_stop="57464" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57463" e_stop="57368" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.938">
            <gDNA_intron_boundary i_start="57367" i_stop="57211" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57210" e_stop="57098" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.869" acc_prob="0.985">
            <gDNA_intron_boundary i_start="57097" i_stop="56994" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56993" e_stop="56927" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.911" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56926" i_stop="56463" i_length="464"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56462" e_stop="56370" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="56369" i_stop="56169" i_length="201"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56168" e_stop="56025" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.586">
            <gDNA_intron_boundary i_start="56024" i_stop="55795" i_length="230"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55794" e_stop="55706" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.978" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55705" i_stop="55621" i_length="85"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="55620" e_stop="55439" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57614" stop="57537"/>
              <exon start="57463" stop="57368"/>
              <exon start="57210" stop="57098"/>
              <exon start="56993" stop="56927"/>
              <exon start="56462" stop="56370"/>
              <exon start="56168" stop="56025"/>
              <exon start="55794" stop="55706"/>
              <exon start="55620" stop="55439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56161" stop="56025"/>
              <exon start="55794" stop="55706"/>
              <exon start="55620" stop="55605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAATCTCTCATTATCAATGGACAAAGAAAAATTCTGTTTTCTGGCTCTGTTCATTATCCAAGAAGCACCCCTGAT : ATGTGGGAGGGCATTATACAGAAGGCAAAAGATGGAGGATTGGATGTTATAGAAACCTATGTGTTTTGGAATCTTCATGAACCTTCACCTGGCAAT : TACAACTTTGAGGGGCGTAATGATTTAGTTCGATTCATAAAGCTGATTCAGAAGGCAGGGCTTTATATGCATCTTCGAATTGGGCCTTATATTTGTGGAGAGTGGAATTTTGG : TGGTTTTCCTGTATGGTTGAAGTATGTTCCTGGAATCAGCTTTAGAACCAATAATGAACCTTTCAAG : AGGGAAATGCAAAGATTCACCACGAAAATTGTCCAAATGATGAAGAATGAGAAGCTATTTCAGACCCAAGGTGGTCCTATCATTCTGTCTCAG : ATTGAGAACGAGTATGGGTTAGAAATAAAACAATATGGTGCTCCAGGTCATGCATACATGACTTGGGCAGCTAAAATGGCTGTTGAAATGGGTACTGGGGTCCCGTGGGTCATGTGCAAGGAGGATGATGCCCCTGATCCAGTG : ATAAACACCTGCAATGGTTTTTATTGTGATTATTTTTCCCCTAACAAACCTAACAAGCCAACAATATGGACAGAGGCATGGAGTGGCTG : GTTTGATGATTTTGGCGGTCCAGTTCATCATCGACCAGTTGAAGATTTGGCCTTTGCAGTAGCTCGGTTCATTCAAAAAGGTGGCTCTTTGGTGAATTATTATATGGTGGGTGGATTTCCTACAGCTTTTGAAATCTCATTACTGCAGCTCCTGTACATGGAATTTAACTAATAACTACTTC</gDNA_template>
            <first_frame> K  K  S  L  I  I  N  G  Q  R  K  I  L  F  S  G  S  V  H  Y  P  R  S  T  P  D  :  M  W  E  G  I  I  Q  K  A  K  D  G  G  L  D  V  I  E  T  Y  V  F  W  N  L  H  E  P  S  P  G  N  :  Y  N  F  E  G  R  N  D  L  V  R  F  I  K  L  I  Q  K  A  G  L  Y  M  H  L  R  I  G  P  Y  I  C  G  E  W  N  F  G :   G  F  P  V  W  L  K  Y  V  P  G  I  S  F  R  T  N  N  E  P  F  K  :  R  E  M  Q  R  F  T  T  K  I  V  Q  M  M  K  N  E  K  L  F  Q  T  Q  G  G  P  I  I  L  S  Q  :  I  E  N  E  Y  G  L  E  I  K  Q  Y  G  A  P  G  H  A  Y  M  T  W  A  A  K  M  A  V  E  M  G  T  G  V  P  W  V  M  C  K  E  D  D  A  P  D  P  V  :  I  N  T  C  N  G  F  Y  C  D  Y  F  S  P  N  K  P  N  K  P  T  I  W  T  E  A  W  S  G  W :   F  D  D  F  G  G  P  V  H  H  R  P  V  E  D  L  A  F  A  V  A  R  F  I  Q  K  G  G  S  L  V  N  Y  Y  M  V  G  G  F  P  T  A  F  E  I  S  L  L  Q  L  L  Y  M  E  F  N  *  *  L  L  </first_frame>
            <second_frame>  R  N  L  S  L  S  M  D  K  E  K  F  C  F  L  A  L  F  I  I  Q  E  A  P  L  I :   C  G  R  A  L  Y  R  R  Q  K  M  E  D  W  M  L  *  K  P  M  C  F  G  I  F  M  N  L  H  L  A  I :   T  T  L  R  G  V  M  I  *  F  D  S  *  S  *  F  R  R  Q  G  F  I  C  I  F  E  L  G  L  I  F  V  E  S  G  I  L   : V  V  F  L  Y  G  *  S  M  F  L  E  S  A  L  E  P  I  M  N  L  S  R :   G  K  C  K  D  S  P  R  K  L  S  K  *  *  R  M  R  S  Y  F  R  P  K  V  V  L  S  F  C  L  R :   L  R  T  S  M  G  *  K  *  N  N  M  V  L  Q  V  M  H  T  *  L  G  Q  L  K  W  L  L  K  W  V  L  G  S  R  G  S  C  A  R  R  M  M  P  L  I  Q  * :   *  T  P  A  M  V  F  I  V  I  I  F  P  L  T  N  L  T  S  Q  Q  Y  G  Q  R  H  G  V  A   : G  L  M  I  L  A  V  Q  F  I  I  D  Q  L  K  I  W  P  L  Q  *  L  G  S  F  K  K  V  A  L  W  *  I  I  I  W  W  V  D  F  L  Q  L  L  K  S  H  Y  C  S  S  C  T  W  N  L  T  N  N  Y  F </second_frame>
            <third_frame>   E  I  S  H  Y  Q  W  T  K  K  N  S  V  F  W  L  C  S  L  S  K  K  H  P  *   : Y  V  G  G  H  Y  T  E  G  K  R  W  R  I  G  C  Y  R  N  L  C  V  L  E  S  S  *  T  F  T  W  Q   : L  Q  L  *  G  A  *  *  F  S  S  I  H  K  A  D  S  E  G  R  A  L  Y  A  S  S  N  W  A  L  Y  L  W  R  V  E  F  W  :  W  F  S  C  M  V  E  V  C  S  W  N  Q  L  *  N  Q  *  *  T  F  Q   : E  G  N  A  K  I  H  H  E  N  C  P  N  D  E  E  *  E  A  I  S  D  P  R  W  S  Y  H  S  V  S   : D  *  E  R  V  W  V  R  N  K  T  I  W  C  S  R  S  C  I  H  D  L  G  S  *  N  G  C  *  N  G  Y  W  G  P  V  G  H  V  Q  G  G  *  C  P  *  S  S   : D  K  H  L  Q  W  F  L  L  *  L  F  F  P  *  Q  T  *  Q  A  N  N  M  D  R  G  M  E  W  L  :  V  *  *  F  W  R  S  S  S  S  S  T  S  *  R  F  G  L  C  S  S  S  V  H  S  K  R  W  L  F  G  E  L  L  Y  G  G  W  I  S  Y  S  F  *  N  L  I  T  A  A  P  V  H  G  I  *  L  I  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57614" stop="57537"/>
                    <exon start="57463" stop="57368"/>
                    <exon start="57210" stop="57098"/>
                    <exon start="56993" stop="56927"/>
                    <exon start="56462" stop="56370"/>
                    <exon start="56168" stop="56025"/>
                    <exon start="55794" stop="55706"/>
                    <exon start="55620" stop="55449"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSLIINGQRKILFSGSVHYPRSTPDMWEGIIQKAKDGGLDVIETYVFWNLHEPSPGNYNFEGRNDLVRFIKLIQKAGLYMHLRIGPYICGEWNFGGFPVWLKYVPGISFRTNNEPFKREMQRFTTKIVQMMKNEKLFQTQGGPIILSQIENEYGLEIKQYGAPGHAYMTWAAKMAVEMGTGVPWVMCKEDDAPDPVINTCNGFYCDYFSPNKPNKPTIWTEAWSGWFDDFGGPVHHRPVEDLAFAVARFIQKGGSLVNYYMVGGFPTAFEISLLQLLYMEFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="52921" e_stop="52810"/>
            <exon e_start="52487" e_stop="52285"/>
            <exon e_start="52210" e_stop="51846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="52921" e_stop="52810" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52809" i_stop="52488" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52487" e_stop="52285" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52284" i_stop="52211" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="52210" e_stop="51846" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52921" stop="52810"/>
              <exon start="52487" stop="52285"/>
              <exon start="52210" stop="51846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAG : GTATATTTCAATGCACCAGGAGGAAGTGATCCATTAGCACTGGACATGGGTAGTATGGGAAAAGGTCAAGTATGGATCAATGGACAGAGCATTGGAAGATACTGGACCGCTTATGCCACTGGTAACTGCAGTCCTTGTACTTATGCAGCTACATACAGACAAGGAAAGTGCCAATCTGGTTGCGGCCAGCCAACTCAAAGATG : GTACCACGTTCCTCGATCTTGGTTGAAGCCAACTGGGAACTTGCTGGTAGTTTTTGAGGAGATAGGTGGGGATGCATCAAAGATTTCTCTTGTCAAACGGTCAATTACACATGTATAGATATGATATTATTTAGGTACCACTAATTAGAAAGTAAAGTTTGGTCTCATAGAACGAAATAGTTCAATGAAAAAACTCCTATGCTAGTTTTTTCAGCAATAATTAGCTTATTTGCTTTGCAAAATTATCTTTGTTCAAAATACGGTTGCAATGCCACTGCTTGTCTTCCTCATCAGTGTATATATATTTACAAGTTATTGTTGGAAAAAAGAATTCTGATCAAAATTTCAATTTTCAATTGCTTTAG</gDNA_template>
            <first_frame> G  G  V  E  R  R  G  H  E  L  G  F  K  C  N  I  C  C  *  M  G  R  R  L  F  D  C  K  T  A  T  T  S  Y  M  V  Q   : G  I  F  Q  C  T  R  R  K  *  S  I  S  T  G  H  G  *  Y  G  K  R  S  S  M  D  Q  W  T  E  H  W  K  I  L  D  R  L  C  H  W  *  L  Q  S  L  Y  L  C  S  Y  I  Q  T  R  K  V  P  I  W  L  R  P  A  N  S  K  M  :  V  P  R  S  S  I  L  V  E  A  N  W  E  L  A  G  S  F  *  G  D  R  W  G  C  I  K  D  F  S  C  Q  T  V  N  Y  T  C  I  D  M  I  L  F  R  Y  H  *  L  E  S  K  V  W  S  H  R  T  K  *  F  N  E  K  T  P  M  L  V  F  S  A  I  I  S  L  F  A  L  Q  N  Y  L  C  S  K  Y  G  C  N  A  T  A  C  L  P  H  Q  C  I  Y  I  Y  K  L  L  L  E  K  R  I  L  I  K  I  S  I  F  N  C  F   </first_frame>
            <second_frame>  V  G  L  R  G  E  A  M  N  L  A  S  N  A  I  S  A  A  E  W  V  G  G  S  L  I  A  R  Q  R  Q  P  L  T  W  Y  K  :  V  Y  F  N  A  P  G  G  S  D  P  L  A  L  D  M  G  S  M  G  K  G  Q  V  W  I  N  G  Q  S  I  G  R  Y  W  T  A  Y  A  T  G  N  C  S  P  C  T  Y  A  A  T  Y  R  Q  G  K  C  Q  S  G  C  G  Q  P  T  Q  R  W :   Y  H  V  P  R  S  W  L  K  P  T  G  N  L  L  V  V  F  E  E  I  G  G  D  A  S  K  I  S  L  V  K  R  S  I  T  H  V  *  I  *  Y  Y  L  G  T  T  N  *  K  V  K  F  G  L  I  E  R  N  S  S  M  K  K  L  L  C  *  F  F  Q  Q  *  L  A  Y  L  L  C  K  I  I  F  V  Q  N  T  V  A  M  P  L  L  V  F  L  I  S  V  Y  I  F  T  S  Y  C  W  K  K  E  F  *  S  K  F  Q  F  S  I  A  L  </second_frame>
            <third_frame>   W  G  *  E  A  R  P  *  T  W  L  Q  M  Q  Y  L  L  L  N  G  *  E  A  L  *  L  Q  D  S  D  N  L  L  H  G  T  R :   Y  I  S  M  H  Q  E  E  V  I  H  *  H  W  T  W  V  V  W  E  K  V  K  Y  G  S  M  D  R  A  L  E  D  T  G  P  L  M  P  L  V  T  A  V  L  V  L  M  Q  L  H  T  D  K  E  S  A  N  L  V  A  A  S  Q  L  K  D   : G  T  T  F  L  D  L  G  *  S  Q  L  G  T  C  W  *  F  L  R  R  *  V  G  M  H  Q  R  F  L  L  S  N  G  Q  L  H  M  Y  R  Y  D  I  I  *  V  P  L  I  R  K  *  S  L  V  S  *  N  E  I  V  Q  *  K  N  S  Y  A  S  F  F  S  N  N  *  L  I  C  F  A  K  L  S  L  F  K  I  R  L  Q  C  H  C  L  S  S  S  S  V  Y  I  Y  L  Q  V  I  V  G  K  K  N  S  D  Q  N  F  N  F  Q  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52920" stop="52810"/>
                    <exon start="52487" stop="52285"/>
                    <exon start="52210" stop="52093"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGLRGEAMNLASNAISAAEWVGGSLIARQRQPLTWYKVYFNAPGGSDPLALDMGSMGKGQVWINGQSIGRYWTAYATGNCSPCTYAATYRQGKCQSGCGQPTQRWYHVPRSWLKPTGNLLVVFEEIGGDASKISLVKRSITHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="53754" e_stop="53735"/>
            <exon e_start="53660" e_stop="53551"/>
            <exon e_start="53452" e_stop="53343"/>
            <exon e_start="53106" e_stop="52996"/>
            <exon e_start="52920" e_stop="52796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.568" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.997" e_score="0.991"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53754" e_stop="53735" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53734" i_stop="53661" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53660" e_stop="53551" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.568">
            <gDNA_intron_boundary i_start="53550" i_stop="53453" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53452" e_stop="53343" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53342" i_stop="53107" i_length="236"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="53106" e_stop="52996" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.909" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52995" i_stop="52921" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="52920" e_stop="52796" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53754" stop="53735"/>
              <exon start="53660" stop="53551"/>
              <exon start="53452" stop="53343"/>
              <exon start="53106" stop="52996"/>
              <exon start="52920" stop="52796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270947" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCTTTGGTACACCACTAG : CGTCGAGATAAATTCAGCTGAATCATTTCTACACCGAGGGCAACATCCTACTCTTGCTGTGCAGTCAGCAGGCCATGCCTTGCACGTTTATGTTAATGGACGGCTTTCAG : GTTCAGTTTATGGAAACCGAGAAAACCGAAGAGTTACATTTACAGGAGGTGTTAACCTGCATGCTGGAATAAACAGAATTTCTCTACTCAGTGTAGCTGTTGGATTGCCG : AACAACGGAGCACGTTATGAGACATGGAGTGCAGGAGTCCTTGGGCCAGTCGTTCTTCATGGGCTAGACAAGGGTCAAAGGGACTTATCATGGCAGAAATGGTCATATCAG : GTGGGGTTGAGAGGCGAGGCCATGAACTTGGCTTCAAATGCAATATCTGCTGCTGAATGGGTAGGAGGCTCTTTGATTGCAAGACAGCGACAACCTCTTACATGGTACAAGGTATATATTTTTGC</gDNA_template>
            <first_frame> Y  L  W  Y  T  T  S :   V  E  I  N  S  A  E  S  F  L  H  R  G  Q  H  P  T  L  A  V  Q  S  A  G  H  A  L  H  V  Y  V  N  G  R  L  S   : G  S  V  Y  G  N  R  E  N  R  R  V  T  F  T  G  G  V  N  L  H  A  G  I  N  R  I  S  L  L  S  V  A  V  G  L  P  :  N  N  G  A  R  Y  E  T  W  S  A  G  V  L  G  P  V  V  L  H  G  L  D  K  G  Q  R  D  L  S  W  Q  K  W  S  Y  Q  :  V  G  L  R  G  E  A  M  N  L  A  S  N  A  I  S  A  A  E  W  V  G  G  S  L  I  A  R  Q  R  Q  P  L  T  W  Y  K  V  Y  I  F   </first_frame>
            <second_frame>  T  F  G  T  P  L   : A  S  R  *  I  Q  L  N  H  F  Y  T  E  G  N  I  L  L  L  L  C  S  Q  Q  A  M  P  C  T  F  M  L  M  D  G  F  Q  :  V  Q  F  M  E  T  E  K  T  E  E  L  H  L  Q  E  V  L  T  C  M  L  E  *  T  E  F  L  Y  S  V  *  L  L  D  C  R :   T  T  E  H  V  M  R  H  G  V  Q  E  S  L  G  Q  S  F  F  M  G  *  T  R  V  K  G  T  Y  H  G  R  N  G  H  I  R :   W  G  *  E  A  R  P  *  T  W  L  Q  M  Q  Y  L  L  L  N  G  *  E  A  L  *  L  Q  D  S  D  N  L  L  H  G  T  R  Y  I  F  L  </second_frame>
            <third_frame>   P  L  V  H  H  *  :  R  R  D  K  F  S  *  I  I  S  T  P  R  A  T  S  Y  S  C  C  A  V  S  R  P  C  L  A  R  L  C  *  W  T  A  F  R :   F  S  L  W  K  P  R  K  P  K  S  Y  I  Y  R  R  C  *  P  A  C  W  N  K  Q  N  F  S  T  Q  C  S  C  W  I  A   : E  Q  R  S  T  L  *  D  M  E  C  R  S  P  W  A  S  R  S  S  W  A  R  Q  G  S  K  G  L  I  M  A  E  M  V  I  S   : G  G  V  E  R  R  G  H  E  L  G  F  K  C  N  I  C  C  *  M  G  R  R  L  F  D  C  K  T  A  T  T  S  Y  M  V  Q  G  I  Y  F  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53754" stop="53735"/>
                    <exon start="53660" stop="53551"/>
                    <exon start="53452" stop="53343"/>
                    <exon start="53106" stop="52996"/>
                    <exon start="52920" stop="52798"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLWYTTSVEINSAESFLHRGQHPTLAVQSAGHALHVYVNGRLSGSVYGNRENRRVTFTGGVNLHAGINRISLLSVAVGLPNNGARYETWSAGVLGPVVLHGLDKGQRDLSWQKWSYQVGLRGEAMNLASNAISAAEWVGGSLIARQRQPLTWYKVYIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="76769" PGL_stop="65025"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67169" e_stop="67096"/>
            <exon e_start="66154" e_stop="65986"/>
            <exon e_start="65905" e_stop="65776"/>
            <exon e_start="65696" e_stop="65025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67169" e_stop="67096" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67095" i_stop="66155" i_length="941"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66154" e_stop="65986" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65985" i_stop="65906" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65905" e_stop="65776" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65775" i_stop="65697" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65696" e_stop="65025" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67169" stop="67096"/>
              <exon start="66154" stop="65986"/>
              <exon start="65905" stop="65776"/>
              <exon start="65696" stop="65533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66083" stop="65986"/>
              <exon start="65905" stop="65776"/>
              <exon start="65696" stop="65161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66077" stop="65986"/>
              <exon start="65905" stop="65776"/>
              <exon start="65696" stop="65313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65820" stop="65776"/>
              <exon start="65696" stop="65359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65555" stop="65025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGAGGGTCTTATTTTGGAGGGCACCCCAGCTGCTGAAGGTGTTTCAGTGGGTGATATGTCAAAGCGCAAGGG : GCTGCAAGAAAAGAAGATTATCAAGCTGAAGTCCCCAAATTTCCATGTGTCAAGGACACGGCTGATTATGTACAATGTTCCCAAGTCAATGACTGAAAAACAGCTGAAGACACTTTGCATTGATGCAGTTACTTCTCGTGCTACTAAGCAAAAGCCTGTTATCCGGCAG : ATAAAGTTTTTGAAGGACGTGAAAAAAGGACAAGCAGTGGCAAAGAATCATTCTCGTGGAGTAGCTTTTCTTGAGTTTTCAGAGCATGAACATGCACTTGTGGCTTTGAGAGTTCTTAACAACAATCCTG : AGACTTTTGGTCCTGAGCATCGACCAATAGTGGAGTTTGCTCTTGACAATATCCAAACAATGAAGCTTCGTCAGAAATTTCAGCAGCAAGGTTTTAACAGGAACAAAGAAGATTTGCAGAAGAATGACAATACGAATGAACGGGATACCCGCGATAAACAGTCAAGAAAACGGAAGGCCCCAGGAGAAGATGAAGCAACAAACAAGCGTGTCAGAGGTGTCACTTTAAGGGAAGGCAATGTGTCGTCAGTTTCAGGTAGTAAAGATGGAGATCAACCAAAAAATAAAGGTGTTAAAGGAGCCGCCTTCTCTGCAGAAAAAAGAGATGAGAAGAAGAACAAGAAGGAAGGTAAAAAGCTAGGAGGCACAAAACAGAAGCTAAACGATAATCAAGAAGGAAAAAGGCATGGTGGCTTTGGTAGTGAAAAAACAGGTAATGCTACTCCCAAGGTTGGACAAAGCGAATACGTTGCAGCAAGAGCAACAAAGAGGAAATTTGAAGATAAAACTAACCAACAAAAACAAAGCGTCAGTTTACAGAACCGGAAAAAGGATAAAAAGAAGAAAGATGCAGTTGGACGAGATGGAGTAGACAAGCTAGATATGCTAATTGAACAATATACATCCAAATTCACTCGCGGCAGTTCTAATCAAACTAATAGTAATCAGCAGC</gDNA_template>
            <first_frame> Q  E  G  L  I  L  E  G  T  P  A  A  E  G  V  S  V  G  D  M  S  K  R  K  G :   L  Q  E  K  K  I  I  K  L  K  S  P  N  F  H  V  S  R  T  R  L  I  M  Y  N  V  P  K  S  M  T  E  K  Q  L  K  T  L  C  I  D  A  V  T  S  R  A  T  K  Q  K  P  V  I  R  Q  :  I  K  F  L  K  D  V  K  K  G  Q  A  V  A  K  N  H  S  R  G  V  A  F  L  E  F  S  E  H  E  H  A  L  V  A  L  R  V  L  N  N  N  P   : E  T  F  G  P  E  H  R  P  I  V  E  F  A  L  D  N  I  Q  T  M  K  L  R  Q  K  F  Q  Q  Q  G  F  N  R  N  K  E  D  L  Q  K  N  D  N  T  N  E  R  D  T  R  D  K  Q  S  R  K  R  K  A  P  G  E  D  E  A  T  N  K  R  V  R  G  V  T  L  R  E  G  N  V  S  S  V  S  G  S  K  D  G  D  Q  P  K  N  K  G  V  K  G  A  A  F  S  A  E  K  R  D  E  K  K  N  K  K  E  G  K  K  L  G  G  T  K  Q  K  L  N  D  N  Q  E  G  K  R  H  G  G  F  G  S  E  K  T  G  N  A  T  P  K  V  G  Q  S  E  Y  V  A  A  R  A  T  K  R  K  F  E  D  K  T  N  Q  Q  K  Q  S  V  S  L  Q  N  R  K  K  D  K  K  K  K  D  A  V  G  R  D  G  V  D  K  L  D  M  L  I  E  Q  Y  T  S  K  F  T  R  G  S  S  N  Q  T  N  S  N  Q  Q  </first_frame>
            <second_frame>  R  R  V  L  F  W  R  A  P  Q  L  L  K  V  F  Q  W  V  I  C  Q  S  A  R   : G  C  K  K  R  R  L  S  S  *  S  P  Q  I  S  M  C  Q  G  H  G  *  L  C  T  M  F  P  S  Q  *  L  K  N  S  *  R  H  F  A  L  M  Q  L  L  L  V  L  L  S  K  S  L  L  S  G  R :   *  S  F  *  R  T  *  K  K  D  K  Q  W  Q  R  I  I  L  V  E  *  L  F  L  S  F  Q  S  M  N  M  H  L  W  L  *  E  F  L  T  T  I  L  :  R  L  L  V  L  S  I  D  Q  *  W  S  L  L  L  T  I  S  K  Q  *  S  F  V  R  N  F  S  S  K  V  L  T  G  T  K  K  I  C  R  R  M  T  I  R  M  N  G  I  P  A  I  N  S  Q  E  N  G  R  P  Q  E  K  M  K  Q  Q  T  S  V  S  E  V  S  L  *  G  K  A  M  C  R  Q  F  Q  V  V  K  M  E  I  N  Q  K  I  K  V  L  K  E  P  P  S  L  Q  K  K  E  M  R  R  R  T  R  R  K  V  K  S  *  E  A  Q  N  R  S  *  T  I  I  K  K  E  K  G  M  V  A  L  V  V  K  K  Q  V  M  L  L  P  R  L  D  K  A  N  T  L  Q  Q  E  Q  Q  R  G  N  L  K  I  K  L  T  N  K  N  K  A  S  V  Y  R  T  G  K  R  I  K  R  R  K  M  Q  L  D  E  M  E  *  T  S  *  I  C  *  L  N  N  I  H  P  N  S  L  A  A  V  L  I  K  L  I  V  I  S  S </second_frame>
            <third_frame>   G  G  S  Y  F  G  G  H  P  S  C  *  R  C  F  S  G  *  Y  V  K  A  Q  G  :  A  A  R  K  E  D  Y  Q  A  E  V  P  K  F  P  C  V  K  D  T  A  D  Y  V  Q  C  S  Q  V  N  D  *  K  T  A  E  D  T  L  H  *  C  S  Y  F  S  C  Y  *  A  K  A  C  Y  P  A   : D  K  V  F  E  G  R  E  K  R  T  S  S  G  K  E  S  F  S  W  S  S  F  S  *  V  F  R  A  *  T  C  T  C  G  F  E  S  S  *  Q  Q  S  * :   D  F  W  S  *  A  S  T  N  S  G  V  C  S  *  Q  Y  P  N  N  E  A  S  S  E  I  S  A  A  R  F  *  Q  E  Q  R  R  F  A  E  E  *  Q  Y  E  *  T  G  Y  P  R  *  T  V  K  K  T  E  G  P  R  R  R  *  S  N  K  Q  A  C  Q  R  C  H  F  K  G  R  Q  C  V  V  S  F  R  *  *  R  W  R  S  T  K  K  *  R  C  *  R  S  R  L  L  C  R  K  K  R  *  E  E  E  Q  E  G  R  *  K  A  R  R  H  K  T  E  A  K  R  *  S  R  R  K  K  A  W  W  L  W  *  *  K  N  R  *  C  Y  S  Q  G  W  T  K  R  I  R  C  S  K  S  N  K  E  E  I  *  R  *  N  *  P  T  K  T  K  R  Q  F  T  E  P  E  K  G  *  K  E  E  R  C  S  W  T  R  W  S  R  Q  A  R  Y  A  N  *  T  I  Y  I  Q  I  H  S  R  Q  F  *  S  N  *  *  *  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67169" stop="67096"/>
                    <exon start="66154" stop="65986"/>
                    <exon start="65905" stop="65776"/>
                    <exon start="65696" stop="65026"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEGLILEGTPAAEGVSVGDMSKRKGLQEKKIIKLKSPNFHVSRTRLIMYNVPKSMTEKQLKTLCIDAVTSRATKQKPVIRQIKFLKDVKKGQAVAKNHSRGVAFLEFSEHEHALVALRVLNNNPETFGPEHRPIVEFALDNIQTMKLRQKFQQQGFNRNKEDLQKNDNTNERDTRDKQSRKRKAPGEDEATNKRVRGVTLREGNVSSVSGSKDGDQPKNKGVKGAAFSAEKRDEKKNKKEGKKLGGTKQKLNDNQEGKRHGGFGSEKTGNATPKVGQSEYVAARATKRKFEDKTNQQKQSVSLQNRKKDKKKKDAVGRDGVDKLDMLIEQYTSKFTRGSSNQTNSNQQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76769" e_stop="76593"/>
            <exon e_start="76520" e_stop="76460"/>
            <exon e_start="76298" e_stop="76262"/>
            <exon e_start="75854" e_stop="75724"/>
            <exon e_start="75605" e_stop="75510"/>
            <exon e_start="75401" e_stop="75237"/>
            <exon e_start="74489" e_stop="74402"/>
            <exon e_start="73201" e_stop="73068"/>
            <exon e_start="72750" e_stop="72611"/>
            <exon e_start="71134" e_stop="71084"/>
            <exon e_start="70955" e_stop="70873"/>
            <exon e_start="70795" e_stop="70741"/>
            <exon e_start="69638" e_stop="69524"/>
            <exon e_start="68037" e_stop="67545"/>
            <exon e_start="67474" e_stop="67261"/>
            <exon e_start="67166" e_stop="67096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.926" e_score="0.989"/>
          <exon-intron don_prob="0.965" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.250" acc_prob="0.992" e_score="0.979"/>
          <exon-intron don_prob="0.835" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.991" e_score="0.996"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="76769" e_stop="76593" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.926">
            <gDNA_intron_boundary i_start="76592" i_stop="76521" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76520" e_stop="76460" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.997">
            <gDNA_intron_boundary i_start="76459" i_stop="76299" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76298" e_stop="76262" e_length="37"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.885">
            <gDNA_intron_boundary i_start="76261" i_stop="75855" i_length="407"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75854" e_stop="75724" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75723" i_stop="75606" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="75605" e_stop="75510" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.250" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75509" i_stop="75402" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75401" e_stop="75237" e_length="165"/>
          </exon>
          <intron i_serial="6" don_prob="0.835" acc_prob="0.919">
            <gDNA_intron_boundary i_start="75236" i_stop="74490" i_length="747"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="74489" e_stop="74402" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74401" i_stop="73202" i_length="1200"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73201" e_stop="73068" e_length="134"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.669">
            <gDNA_intron_boundary i_start="73067" i_stop="72751" i_length="317"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="72750" e_stop="72611" e_length="140"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.959">
            <gDNA_intron_boundary i_start="72610" i_stop="71135" i_length="1476"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="71134" e_stop="71084" e_length="51"/>
          </exon>
          <intron i_serial="10" don_prob="0.937" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71083" i_stop="70956" i_length="128"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="70955" e_stop="70873" e_length="83"/>
          </exon>
          <intron i_serial="11" don_prob="0.975" acc_prob="0.994">
            <gDNA_intron_boundary i_start="70872" i_stop="70796" i_length="77"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="70795" e_stop="70741" e_length="55"/>
          </exon>
          <intron i_serial="12" don_prob="0.986" acc_prob="0.989">
            <gDNA_intron_boundary i_start="70740" i_stop="69639" i_length="1102"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="69638" e_stop="69524" e_length="115"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="69523" i_stop="68038" i_length="1486"/>
          </intron>
          <exon e_serial="14" e_score="0.996">
            <gDNA_exon_boundary e_start="68037" e_stop="67545" e_length="493"/>
          </exon>
          <intron i_serial="14" don_prob="0.981" acc_prob="0.991">
            <gDNA_intron_boundary i_start="67544" i_stop="67475" i_length="70"/>
          </intron>
          <exon e_serial="15" e_score="0.991">
            <gDNA_exon_boundary e_start="67474" e_stop="67261" e_length="214"/>
          </exon>
          <intron i_serial="15" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67260" i_stop="67167" i_length="94"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="67166" e_stop="67096" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76769" stop="76593"/>
              <exon start="76520" stop="76460"/>
              <exon start="76298" stop="76262"/>
              <exon start="75854" stop="75724"/>
              <exon start="75605" stop="75510"/>
              <exon start="75401" stop="75237"/>
              <exon start="74489" stop="74402"/>
              <exon start="73201" stop="73068"/>
              <exon start="72750" stop="72611"/>
              <exon start="71134" stop="71084"/>
              <exon start="70955" stop="70873"/>
              <exon start="70795" stop="70741"/>
              <exon start="69638" stop="69524"/>
              <exon start="68037" stop="67545"/>
              <exon start="67474" stop="67261"/>
              <exon start="67166" stop="67096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAACAAGAAACGCCATTGCTTCTTGTTCGGTGTTCTTGACAATCGAAACTCCATTGCTTCTTGACAATCATATAGATGGGAAAAAACAAGAAGACGATGTCTGGTGGCGATAGCCAACACTCACCTTCCACTATTTTTGTTAACAATTTACCTTATTCTTTCACTAATGCTCAG : TTGGAGGAGACGTTCAGTGAAGTTGGACCCATTAGGCGGTGTTTTATGGTTACCAATAAAG : GTTCAAGCGAGCACCGGGGTTTTGGCTTTGTCCAATT : TGCATCTGTAGACGATGCTAACCGGTCCATCGAGCTAAAGAATGGATCAGTGGTTGGAGGAAGGAAAATTGGTGTCAAACAGGCTATGCAGCGTGCTCCTCGTGAACAACGGCAATCAAAGGGGGATCAAG : AAAGCACTGCAAAAGCAAAAGATGGCAAGGATGGTCCTTCTGCTGAATCAGTTGAATCAGTTGAGGACAAAGAAGCTTCAAACATGGAGGGAACAG : GAAGTACCGCACAAGCAAAGGACGGCAAAAACGGTCCTTCTACTGAATCAGCTAAGCTCAAACAAGCTTCAAACCCTCAAAGTATTGCACAAGAAAAAGACGGGAAAGATGGTGCTTCTACTGAAGCAGCTAAGCACAAACAAGCTTCAAGCCGGCAAGGAACAG : AGAACTCAGGTAAGCCCGCTAGGAAAAAAAAGGCTACATTGCTTTCCAATGGTGCAGCTGATGATGGAAATTATTCAGGAAAGCAGAG : GGTCGCCAGGACAGTTATAATAGGAGGAATTGTAAATGCAAATATGGCAAAAGAGGCTCACCAGCTTGCGGCGGAGTGTGGCACCATATGTTCTATTACTTACCCTCTTCCAAAAGAAGAGATTGAAAATCATG : GGCTAGCACATGATGGTTGTCAAATGGATGCTTCATCTGTACTTTTCACTAGTGTCAAATCAGCTCAAGCTTGTGTTGCATCATTACACCAAAAAGAAGTACATGGAGCAACGCTTTGGGCACGACAACTTGGTGGAGAG : GGCTCAAAGACTCAACGGTGGAAGCTTATATTGAGGAATCTTCCTTTTAAG : GCCAAAGTGAATGAGATAAAAGATATGTTTTCAAAAGTTGGCTTCGTGTGGGATGTGTTTATCCCTAAGAATTTTGAGACAGG : GTTATCAAAGGGATTTGCATTTGTGAAATTTACAACGAAGCAGGATGCAGAGAAT : GCTATTAAGACATTTAATGGGAAAACAATGAATAAACGAACTATTGCGGTTGATTGGGCCGTTTCCAAAAAGGTTTATGCATCTGGTGGTCAATCTTCTGCAACTGCAATAGATG : AACAGAGCGCAAAAGATGATAGTGGTAGTGATACGGAGGATGAAGACATTGACATTGATGGAAAATCTCAGCAAGCTGAAGGGGACGAAGATGACTCTGACCTTTTAGAAGAAGATAATCAGACCGAATTTAACTTTGATGAGGAAGCAGACATTGCAAAAAAAATTCTTCAGAACTTTATTTCTCCAACTTCAATAGTGACAGCTACTCCCGCAGATGATATTTCAAGCCCCCAAAAGAAGGGAAAGGATGTTGAAACTATTATCCCCGTGGATGAACCACTTGATGCATCTACTCCGAATAAAGCACTAAATGATGTTTCGGGCAAGGACAAAGAAGTTAAAGATATGCAGAGTGAGGGAGCAGATGATCTGCAGGGGACAGTTTTCATTAGCAACCTTCCTTTTGATGTTGATTATGGAGAAGTCAAACAACGGTTTTCAGCTTTTGGTGAAGTGGAGTACTTTGCTCCAGTTCTTGAACAAGTCACCAA : ACGACCAAGGGGTACTGGATTTCTCAAATTTAAAACAGCAGCATCTGCTGAAGCTGCTATTTCCGCTGCCAGTGTTGTGGATGGTTTAGGTGTCTTTCTGAAGGGTCGGCAGTTAAAAATTTTAAAGGCCTTGGACAAAAAAGCTGCTCATGATAAGGATTTGCAGAAGACTAAAAAGGAGGACAATGACCATCGCAACCTTTACCTGGCAAAG : GAGGGTCTTATTTTGGAGGGCACCCCAGCTGCTGAAGGTGTTTCAGTGGGTGATATGTCAAAGCGCAAGGG</gDNA_template>
            <first_frame> Q  K  Q  E  T  P  L  L  L  V  R  C  S  *  Q  S  K  L  H  C  F  L  T  I  I  *  M  G  K  N  K  K  T  M  S  G  G  D  S  Q  H  S  P  S  T  I  F  V  N  N  L  P  Y  S  F  T  N  A  Q  :  L  E  E  T  F  S  E  V  G  P  I  R  R  C  F  M  V  T  N  K   : G  S  S  E  H  R  G  F  G  F  V  Q  F :   A  S  V  D  D  A  N  R  S  I  E  L  K  N  G  S  V  V  G  G  R  K  I  G  V  K  Q  A  M  Q  R  A  P  R  E  Q  R  Q  S  K  G  D  Q   : E  S  T  A  K  A  K  D  G  K  D  G  P  S  A  E  S  V  E  S  V  E  D  K  E  A  S  N  M  E  G  T   : G  S  T  A  Q  A  K  D  G  K  N  G  P  S  T  E  S  A  K  L  K  Q  A  S  N  P  Q  S  I  A  Q  E  K  D  G  K  D  G  A  S  T  E  A  A  K  H  K  Q  A  S  S  R  Q  G  T   : E  N  S  G  K  P  A  R  K  K  K  A  T  L  L  S  N  G  A  A  D  D  G  N  Y  S  G  K  Q  R :   V  A  R  T  V  I  I  G  G  I  V  N  A  N  M  A  K  E  A  H  Q  L  A  A  E  C  G  T  I  C  S  I  T  Y  P  L  P  K  E  E  I  E  N  H   : G  L  A  H  D  G  C  Q  M  D  A  S  S  V  L  F  T  S  V  K  S  A  Q  A  C  V  A  S  L  H  Q  K  E  V  H  G  A  T  L  W  A  R  Q  L  G  G  E  :  G  S  K  T  Q  R  W  K  L  I  L  R  N  L  P  F  K  :  A  K  V  N  E  I  K  D  M  F  S  K  V  G  F  V  W  D  V  F  I  P  K  N  F  E  T  G :   L  S  K  G  F  A  F  V  K  F  T  T  K  Q  D  A  E  N  :  A  I  K  T  F  N  G  K  T  M  N  K  R  T  I  A  V  D  W  A  V  S  K  K  V  Y  A  S  G  G  Q  S  S  A  T  A  I  D   : E  Q  S  A  K  D  D  S  G  S  D  T  E  D  E  D  I  D  I  D  G  K  S  Q  Q  A  E  G  D  E  D  D  S  D  L  L  E  E  D  N  Q  T  E  F  N  F  D  E  E  A  D  I  A  K  K  I  L  Q  N  F  I  S  P  T  S  I  V  T  A  T  P  A  D  D  I  S  S  P  Q  K  K  G  K  D  V  E  T  I  I  P  V  D  E  P  L  D  A  S  T  P  N  K  A  L  N  D  V  S  G  K  D  K  E  V  K  D  M  Q  S  E  G  A  D  D  L  Q  G  T  V  F  I  S  N  L  P  F  D  V  D  Y  G  E  V  K  Q  R  F  S  A  F  G  E  V  E  Y  F  A  P  V  L  E  Q  V  T  K :   R  P  R  G  T  G  F  L  K  F  K  T  A  A  S  A  E  A  A  I  S  A  A  S  V  V  D  G  L  G  V  F  L  K  G  R  Q  L  K  I  L  K  A  L  D  K  K  A  A  H  D  K  D  L  Q  K  T  K  K  E  D  N  D  H  R  N  L  Y  L  A  K  :  E  G  L  I  L  E  G  T  P  A  A  E  G  V  S  V  G  D  M  S  K  R  K   </first_frame>
            <second_frame>  R  N  K  K  R  H  C  F  L  F  G  V  L  D  N  R  N  S  I  A  S  *  Q  S  Y  R  W  E  K  T  R  R  R  C  L  V  A  I  A  N  T  H  L  P  L  F  L  L  T  I  Y  L  I  L  S  L  M  L  S :   W  R  R  R  S  V  K  L  D  P  L  G  G  V  L  W  L  P  I  K  :  V  Q  A  S  T  G  V  L  A  L  S  N   : L  H  L  *  T  M  L  T  G  P  S  S  *  R  M  D  Q  W  L  E  E  G  K  L  V  S  N  R  L  C  S  V  L  L  V  N  N  G  N  Q  R  G  I  K  :  K  A  L  Q  K  Q  K  M  A  R  M  V  L  L  L  N  Q  L  N  Q  L  R  T  K  K  L  Q  T  W  R  E  Q  :  E  V  P  H  K  Q  R  T  A  K  T  V  L  L  L  N  Q  L  S  S  N  K  L  Q  T  L  K  V  L  H  K  K  K  T  G  K  M  V  L  L  L  K  Q  L  S  T  N  K  L  Q  A  G  K  E  Q  :  R  T  Q  V  S  P  L  G  K  K  R  L  H  C  F  P  M  V  Q  L  M  M  E  I  I  Q  E  S  R   : G  S  P  G  Q  L  *  *  E  E  L  *  M  Q  I  W  Q  K  R  L  T  S  L  R  R  S  V  A  P  Y  V  L  L  L  T  L  F  Q  K  K  R  L  K  I  M  :  G  *  H  M  M  V  V  K  W  M  L  H  L  Y  F  S  L  V  S  N  Q  L  K  L  V  L  H  H  Y  T  K  K  K  Y  M  E  Q  R  F  G  H  D  N  L  V  E  R :   A  Q  R  L  N  G  G  S  L  Y  *  G  I  F  L  L  R :   P  K  *  M  R  *  K  I  C  F  Q  K  L  A  S  C  G  M  C  L  S  L  R  I  L  R  Q   : G  Y  Q  R  D  L  H  L  *  N  L  Q  R  S  R  M  Q  R  M :   L  L  R  H  L  M  G  K  Q  *  I  N  E  L  L  R  L  I  G  P  F  P  K  R  F  M  H  L  V  V  N  L  L  Q  L  Q  *  M  :  N  R  A  Q  K  M  I  V  V  V  I  R  R  M  K  T  L  T  L  M  E  N  L  S  K  L  K  G  T  K  M  T  L  T  F  *  K  K  I  I  R  P  N  L  T  L  M  R  K  Q  T  L  Q  K  K  F  F  R  T  L  F  L  Q  L  Q  *  *  Q  L  L  P  Q  M  I  F  Q  A  P  K  R  R  E  R  M  L  K  L  L  S  P  W  M  N  H  L  M  H  L  L  R  I  K  H  *  M  M  F  R  A  R  T  K  K  L  K  I  C  R  V  R  E  Q  M  I  C  R  G  Q  F  S  L  A  T  F  L  L  M  L  I  M  E  K  S  N  N  G  F  Q  L  L  V  K  W  S  T  L  L  Q  F  L  N  K  S  P   : N  D  Q  G  V  L  D  F  S  N  L  K  Q  Q  H  L  L  K  L  L  F  P  L  P  V  L  W  M  V  *  V  S  F  *  R  V  G  S  *  K  F  *  R  P  W  T  K  K  L  L  M  I  R  I  C  R  R  L  K  R  R  T  M  T  I  A  T  F  T  W  Q  R :   R  V  L  F  W  R  A  P  Q  L  L  K  V  F  Q  W  V  I  C  Q  S  A  R  </second_frame>
            <third_frame>   E  T  R  N  A  I  A  S  C  S  V  F  L  T  I  E  T  P  L  L  L  D  N  H  I  D  G  K  K  Q  E  D  D  V  W  W  R  *  P  T  L  T  F  H  Y  F  C  *  Q  F  T  L  F  F  H  *  C  S   : V  G  G  D  V  Q  *  S  W  T  H  *  A  V  F  Y  G  Y  Q  *  R :   F  K  R  A  P  G  F  W  L  C  P  I  :  C  I  C  R  R  C  *  P  V  H  R  A  K  E  W  I  S  G  W  R  K  E  N  W  C  Q  T  G  Y  A  A  C  S  S  *  T  T  A  I  K  G  G  S  R :   K  H  C  K  S  K  R  W  Q  G  W  S  F  C  *  I  S  *  I  S  *  G  Q  R  S  F  K  H  G  G  N  R :   K  Y  R  T  S  K  G  R  Q  K  R  S  F  Y  *  I  S  *  A  Q  T  S  F  K  P  S  K  Y  C  T  R  K  R  R  E  R  W  C  F  Y  *  S  S  *  A  Q  T  S  F  K  P  A  R  N  R :   E  L  R  *  A  R  *  E  K  K  G  Y  I  A  F  Q  W  C  S  *  *  W  K  L  F  R  K  A  E  :  G  R  Q  D  S  Y  N  R  R  N  C  K  C  K  Y  G  K  R  G  S  P  A  C  G  G  V  W  H  H  M  F  Y  Y  L  P  S  S  K  R  R  D  *  K  S  W :   A  S  T  *  W  L  S  N  G  C  F  I  C  T  F  H  *  C  Q  I  S  S  S  L  C  C  I  I  T  P  K  R  S  T  W  S  N  A  L  G  T  T  T  W  W  R   : G  L  K  D  S  T  V  E  A  Y  I  E  E  S  S  F  *   : G  Q  S  E  *  D  K  R  Y  V  F  K  S  W  L  R  V  G  C  V  Y  P  *  E  F  *  D  R  :  V  I  K  G  I  C  I  C  E  I  Y  N  E  A  G  C  R  E   : C  Y  *  D  I  *  W  E  N  N  E  *  T  N  Y  C  G  *  L  G  R  F  Q  K  G  L  C  I  W  W  S  I  F  C  N  C  N  R  * :   T  E  R  K  R  *  *  W  *  *  Y  G  G  *  R  H  *  H  *  W  K  I  S  A  S  *  R  G  R  R  *  L  *  P  F  R  R  R  *  S  D  R  I  *  L  *  *  G  S  R  H  C  K  K  N  S  S  E  L  Y  F  S  N  F  N  S  D  S  Y  S  R  R  *  Y  F  K  P  P  K  E  G  K  G  C  *  N  Y  Y  P  R  G  *  T  T  *  C  I  Y  S  E  *  S  T  K  *  C  F  G  Q  G  Q  R  S  *  R  Y  A  E  *  G  S  R  *  S  A  G  D  S  F  H  *  Q  P  S  F  *  C  *  L  W  R  S  Q  T  T  V  F  S  F  W  *  S  G  V  L  C  S  S  S  *  T  S  H  Q  :  T  T  K  G  Y  W  I  S  Q  I  *  N  S  S  I  C  *  S  C  Y  F  R  C  Q  C  C  G  W  F  R  C  L  S  E  G  S  A  V  K  N  F  K  G  L  G  Q  K  S  C  S  *  *  G  F  A  E  D  *  K  G  G  Q  *  P  S  Q  P  L  P  G  K   : G  G  S  Y  F  G  G  H  P  S  C  *  R  C  F  S  G  *  Y  V  K  A  Q  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76691" stop="76593"/>
                    <exon start="76520" stop="76460"/>
                    <exon start="76298" stop="76262"/>
                    <exon start="75854" stop="75724"/>
                    <exon start="75605" stop="75510"/>
                    <exon start="75401" stop="75237"/>
                    <exon start="74489" stop="74402"/>
                    <exon start="73201" stop="73068"/>
                    <exon start="72750" stop="72611"/>
                    <exon start="71134" stop="71084"/>
                    <exon start="70955" stop="70873"/>
                    <exon start="70795" stop="70741"/>
                    <exon start="69638" stop="69524"/>
                    <exon start="68037" stop="67545"/>
                    <exon start="67474" stop="67261"/>
                    <exon start="67166" stop="67098"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2031</number_coding_nucleotides>
                  <number_encoded_amino_acids>677</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGKNKKTMSGGDSQHSPSTIFVNNLPYSFTNAQLEETFSEVGPIRRCFMVTNKGSSEHRGFGFVQFASVDDANRSIELKNGSVVGGRKIGVKQAMQRAPREQRQSKGDQESTAKAKDGKDGPSAESVESVEDKEASNMEGTGSTAQAKDGKNGPSTESAKLKQASNPQSIAQEKDGKDGASTEAAKHKQASSRQGTENSGKPARKKKATLLSNGAADDGNYSGKQRVARTVIIGGIVNANMAKEAHQLAAECGTICSITYPLPKEEIENHGLAHDGCQMDASSVLFTSVKSAQACVASLHQKEVHGATLWARQLGGEGSKTQRWKLILRNLPFKAKVNEIKDMFSKVGFVWDVFIPKNFETGLSKGFAFVKFTTKQDAENAIKTFNGKTMNKRTIAVDWAVSKKVYASGGQSSATAIDEQSAKDDSGSDTEDEDIDIDGKSQQAEGDEDDSDLLEEDNQTEFNFDEEADIAKKILQNFISPTSIVTATPADDISSPQKKGKDVETIIPVDEPLDASTPNKALNDVSGKDKEVKDMQSEGADDLQGTVFISNLPFDVDYGEVKQRFSAFGEVEYFAPVLEQVTKRPRGTGFLKFKTAASAEAAISAASVVDGLGVFLKGRQLKILKALDKKAAHDKDLQKTKKEDNDHRNLYLAKEGLILEGTPAAEGVSVGDMSKRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="82311" PGL_stop="83819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82311" e_stop="82451"/>
            <exon e_start="82972" e_stop="82985"/>
            <exon e_start="83415" e_stop="83819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="0.908"/>
          <exon-intron don_prob="0.900" acc_prob="0.994" e_score="0.571"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="82311" e_stop="82451" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="82452" i_stop="82971" i_length="520"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="82972" e_stop="82985" e_length="14"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.994">
            <gDNA_intron_boundary i_start="82986" i_stop="83414" i_length="429"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="83415" e_stop="83819" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82311" stop="82451"/>
              <exon start="82972" stop="82985"/>
              <exon start="83415" stop="83819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTGTCTTTTTGATTTGTGTTATGCCTGAGAATTAGAATATGATAATTTGAGTATAGGGATCAGATTTTTTGTTTTCAATTTGGTCAATTGAAGCTTTTCTGTTCCCCAGAGAAGACACAAATATTGCTGGTTTTCAG : GGTAAGGTCATCCT : GAGATTGTAATTTGATAGATTTGAAACTCGATAGTAAATCATCTCCAAGTAAAAAAGTCATTGAGAATAGTACTACAGATGGCCACTTATTTTCCTAGTCCAAGCAATCAAAGAGATGCTGATCAGACATTTCAATATTTTAGGCAATCTTTGCCTGAATCTTATTCAGAAGCTTCAAATGCTCCGGAAAACATGATGGTGTTCATGAACTATTCTTCTTCTGGGACATATTCAGATATGTTGACGGGTACTTCCCAACAGCAACACAGCTGCATCGATATCCCATCTATAGGAGCCACGTCCTCCAACACATCCCAACAAGAAGTATTGTCAAATCTTGGAGAATCGCGGATGGGAATTCAGGATTTTTCTTCATGGAGAGATAGCAGAAATGAGATGCTAGCT</gDNA_template>
            <first_frame> F  F  V  F  L  I  C  V  M  P  E  N  *  N  M  I  I  *  V  *  G  S  D  F  L  F  S  I  W  S  I  E  A  F  L  F  P  R  E  D  T  N  I  A  G  F  Q  :  G  K  V  I  L :   R  L  *  F  D  R  F  E  T  R  *  *  I  I  S  K  *  K  S  H  *  E  *  Y  Y  R  W  P  L  I  F  L  V  Q  A  I  K  E  M  L  I  R  H  F  N  I  L  G  N  L  C  L  N  L  I  Q  K  L  Q  M  L  R  K  T  *  W  C  S  *  T  I  L  L  L  G  H  I  Q  I  C  *  R  V  L  P  N  S  N  T  A  A  S  I  S  H  L  *  E  P  R  P  P  T  H  P  N  K  K  Y  C  Q  I  L  E  N  R  G  W  E  F  R  I  F  L  H  G  E  I  A  E  M  R  C  *   </first_frame>
            <second_frame>  F  L  S  F  *  F  V  L  C  L  R  I  R  I  *  *  F  E  Y  R  D  Q  I  F  C  F  Q  F  G  Q  L  K  L  F  C  S  P  E  K  T  Q  I  L  L  V  F  R :   V  R  S  S   : *  D  C  N  L  I  D  L  K  L  D  S  K  S  S  P  S  K  K  V  I  E  N  S  T  T  D  G  H  L  F  S  *  S  K  Q  S  K  R  C  *  S  D  I  S  I  F  *  A  I  F  A  *  I  L  F  R  S  F  K  C  S  G  K  H  D  G  V  H  E  L  F  F  F  W  D  I  F  R  Y  V  D  G  Y  F  P  T  A  T  Q  L  H  R  Y  P  I  Y  R  S  H  V  L  Q  H  I  P  T  R  S  I  V  K  S  W  R  I  A  D  G  N  S  G  F  F  F  M  E  R  *  Q  K  *  D  A  S  </second_frame>
            <third_frame>   F  C  L  F  D  L  C  Y  A  *  E  L  E  Y  D  N  L  S  I  G  I  R  F  F  V  F  N  L  V  N  *  S  F  S  V  P  Q  R  R  H  K  Y  C  W  F  S   : G  *  G  H  P  :  E  I  V  I  *  *  I  *  N  S  I  V  N  H  L  Q  V  K  K  S  L  R  I  V  L  Q  M  A  T  Y  F  P  S  P  S  N  Q  R  D  A  D  Q  T  F  Q  Y  F  R  Q  S  L  P  E  S  Y  S  E  A  S  N  A  P  E  N  M  M  V  F  M  N  Y  S  S  S  G  T  Y  S  D  M  L  T  G  T  S  Q  Q  Q  H  S  C  I  D  I  P  S  I  G  A  T  S  S  N  T  S  Q  Q  E  V  L  S  N  L  G  E  S  R  M  G  I  Q  D  F  S  S  W  R  D  S  R  N  E  M  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83439" stop="83819"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSIVNHLQVKKSLRIVLQMATYFPSPSNQRDADQTFQYFRQSLPESYSEASNAPENMMVFMNYSSSGTYSDMLTGTSQQQHSCIDIPSIGATSSNTSQQEVLSNLGESRMGIQDFSSWRDSRNEMLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="83940" PGL_stop="87318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83940" e_stop="84362"/>
            <exon e_start="85849" e_stop="86228"/>
            <exon e_start="86361" e_stop="86421"/>
            <exon e_start="86978" e_stop="87209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.959" e_score="0.995"/>
          <exon-intron don_prob="0.967" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="83940" e_stop="84362" e_length="423"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.959">
            <gDNA_intron_boundary i_start="84363" i_stop="85848" i_length="1486"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85849" e_stop="86228" e_length="380"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.992">
            <gDNA_intron_boundary i_start="86229" i_stop="86360" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86361" e_stop="86421" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.926" acc_prob="0.989">
            <gDNA_intron_boundary i_start="86422" i_stop="86977" i_length="556"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="86978" e_stop="87209" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83940" stop="84362"/>
              <exon start="85849" stop="86228"/>
              <exon start="86361" stop="86421"/>
              <exon start="86978" stop="87053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84238" stop="84362"/>
              <exon start="85849" stop="86228"/>
              <exon start="86361" stop="86421"/>
              <exon start="86978" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84239" stop="84362"/>
              <exon start="85849" stop="86228"/>
              <exon start="86361" stop="86390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCGGTTTTAACATGTCCTTTGGAGATGGTGATAATTCCCAACCAAAAGAACAAAGAAATGCTGATTATTTTCCTCCGGATCATCCTGGAAGAGACTTGGATGCTATGAAAGGGTATAATTCTCCATATGGTACGTCGAGTATTGCAAGGACCATTCCCAGCTCGAAGTATTTGAAAGCAGCTCAATATTTGCTTGATGAGGTTGTTAGTGTCAGAAAGGCCATCAAGGAGCAAAATTCTAAGAAAGAGTTGACAAAGGATTCGAGAGAGCCTGACCTGGACTCGAAAAATATATCATCAGATACTCCTGCAAATGGAGGTTCAAATCCTCATGAGTCCAAAAACAACCAAAGTGAACTTTCAGCTACCGAGAAGCAAGAAGTGCAGAACAAACTGACCAAACTTCTGTCAATGCTGGATGAG : ATTGATAGAAGGTACAGACAATATTATCATCAGATGCAAATAGTGGTCTCATCATTTGATGTAGTAGCTGGAGATGGAGCAGCAAAACCATACACAGCTCTTGCTCTTCAGACAATTTCCAGACACTTTCGTTGCTTGCGTGATGCAATCTGCGATCAGATTCGAGCATCACGAAGAAGTCTTGGAGAGCAAGATGCTTCAGAAAACAGCAAAGCGATTGGAATATCACGCCTGCGTTTTGTGGATCAGCATATTAGACAGCAGAGAGCCCTGCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCTCAGAGGGGATTGCCTGAAAGCTCTGTTTCAGTTTTGCGTGCTTGGCTCTTTGAGCACTTTCTTCATCC : CTACCCGAAAGATTCTGAAAAAATTATGCTAGCAAGGCAAACTGGCTTAACGAGAAGTCAG : GTATCAAATTGGTTCATAAATGCACGAGTTCGTCTTTGGAAACCCATGGTTGAGGAAATGTACAAAGAAGAGGCTGGTGATGCTAAGATAGACTCAAATTCTTCATCAGAGGTTGCCCCCAGACTTGCATCAAAAGACTCAAAAGTTGAAGAAAGAGGAGAATTGCACCAGAATACAGCTTCAGAATTTGAGCAGTACAATAGTGGCCAAATCCTGGAGTCAAAATCTTACC</gDNA_template>
            <first_frame> G  G  F  N  M  S  F  G  D  G  D  N  S  Q  P  K  E  Q  R  N  A  D  Y  F  P  P  D  H  P  G  R  D  L  D  A  M  K  G  Y  N  S  P  Y  G  T  S  S  I  A  R  T  I  P  S  S  K  Y  L  K  A  A  Q  Y  L  L  D  E  V  V  S  V  R  K  A  I  K  E  Q  N  S  K  K  E  L  T  K  D  S  R  E  P  D  L  D  S  K  N  I  S  S  D  T  P  A  N  G  G  S  N  P  H  E  S  K  N  N  Q  S  E  L  S  A  T  E  K  Q  E  V  Q  N  K  L  T  K  L  L  S  M  L  D  E  :  I  D  R  R  Y  R  Q  Y  Y  H  Q  M  Q  I  V  V  S  S  F  D  V  V  A  G  D  G  A  A  K  P  Y  T  A  L  A  L  Q  T  I  S  R  H  F  R  C  L  R  D  A  I  C  D  Q  I  R  A  S  R  R  S  L  G  E  Q  D  A  S  E  N  S  K  A  I  G  I  S  R  L  R  F  V  D  Q  H  I  R  Q  Q  R  A  L  Q  Q  L  G  M  M  Q  Q  H  A  W  R  P  Q  R  G  L  P  E  S  S  V  S  V  L  R  A  W  L  F  E  H  F  L  H  P :   Y  P  K  D  S  E  K  I  M  L  A  R  Q  T  G  L  T  R  S  Q  :  V  S  N  W  F  I  N  A  R  V  R  L  W  K  P  M  V  E  E  M  Y  K  E  E  A  G  D  A  K  I  D  S  N  S  S  S  E  V  A  P  R  L  A  S  K  D  S  K  V  E  E  R  G  E  L  H  Q  N  T  A  S  E  F  E  Q  Y  N  S  G  Q  I  L  E  S  K  S  Y  </first_frame>
            <second_frame>  A  V  L  T  C  P  L  E  M  V  I  I  P  N  Q  K  N  K  E  M  L  I  I  F  L  R  I  I  L  E  E  T  W  M  L  *  K  G  I  I  L  H  M  V  R  R  V  L  Q  G  P  F  P  A  R  S  I  *  K  Q  L  N  I  C  L  M  R  L  L  V  S  E  R  P  S  R  S  K  I  L  R  K  S  *  Q  R  I  R  E  S  L  T  W  T  R  K  I  Y  H  Q  I  L  L  Q  M  E  V  Q  I  L  M  S  P  K  T  T  K  V  N  F  Q  L  P  R  S  K  K  C  R  T  N  *  P  N  F  C  Q  C  W  M  R :   L  I  E  G  T  D  N  I  I  I  R  C  K  *  W  S  H  H  L  M  *  *  L  E  M  E  Q  Q  N  H  T  Q  L  L  L  F  R  Q  F  P  D  T  F  V  A  C  V  M  Q  S  A  I  R  F  E  H  H  E  E  V  L  E  S  K  M  L  Q  K  T  A  K  R  L  E  Y  H  A  C  V  L  W  I  S  I  L  D  S  R  E  P  C  S  S  L  V  *  C  N  N  M  P  G  G  L  R  G  D  C  L  K  A  L  F  Q  F  C  V  L  G  S  L  S  T  F  F  I   : P  T  R  K  I  L  K  K  L  C  *  Q  G  K  L  A  *  R  E  V  R :   Y  Q  I  G  S  *  M  H  E  F  V  F  G  N  P  W  L  R  K  C  T  K  K  R  L  V  M  L  R  *  T  Q  I  L  H  Q  R  L  P  P  D  L  H  Q  K  T  Q  K  L  K  K  E  E  N  C  T  R  I  Q  L  Q  N  L  S  S  T  I  V  A  K  S  W  S  Q  N  L  T </second_frame>
            <third_frame>   R  F  *  H  V  L  W  R  W  *  *  F  P  T  K  R  T  K  K  C  *  L  F  S  S  G  S  S  W  K  R  L  G  C  Y  E  R  V  *  F  S  I  W  Y  V  E  Y  C  K  D  H  S  Q  L  E  V  F  E  S  S  S  I  F  A  *  *  G  C  *  C  Q  K  G  H  Q  G  A  K  F  *  E  R  V  D  K  G  F  E  R  A  *  P  G  L  E  K  Y  I  I  R  Y  S  C  K  W  R  F  K  S  S  *  V  Q  K  Q  P  K  *  T  F  S  Y  R  E  A  R  S  A  E  Q  T  D  Q  T  S  V  N  A  G  *   : D  *  *  K  V  Q  T  I  L  S  S  D  A  N  S  G  L  I  I  *  C  S  S  W  R  W  S  S  K  T  I  H  S  S  C  S  S  D  N  F  Q  T  L  S  L  L  A  *  C  N  L  R  S  D  S  S  I  T  K  K  S  W  R  A  R  C  F  R  K  Q  Q  S  D  W  N  I  T  P  A  F  C  G  S  A  Y  *  T  A  E  S  P  A  A  A  W  Y  D  A  T  T  C  L  E  A  S  E  G  I  A  *  K  L  C  F  S  F  A  C  L  A  L  *  A  L  S  S  S  :  L  P  E  R  F  *  K  N  Y  A  S  K  A  N  W  L  N  E  K  S   : G  I  K  L  V  H  K  C  T  S  S  S  L  E  T  H  G  *  G  N  V  Q  R  R  G  W  *  C  *  D  R  L  K  F  F  I  R  G  C  P  Q  T  C  I  K  R  L  K  S  *  R  K  R  R  I  A  P  E  Y  S  F  R  I  *  A  V  Q  *  W  P  N  P  G  V  K  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83940" stop="84362"/>
                    <exon start="85849" stop="86228"/>
                    <exon start="86361" stop="86421"/>
                    <exon start="86978" stop="87208"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGFNMSFGDGDNSQPKEQRNADYFPPDHPGRDLDAMKGYNSPYGTSSIARTIPSSKYLKAAQYLLDEVVSVRKAIKEQNSKKELTKDSREPDLDSKNISSDTPANGGSNPHESKNNQSELSATEKQEVQNKLTKLLSMLDEIDRRYRQYYHQMQIVVSSFDVVAGDGAAKPYTALALQTISRHFRCLRDAICDQIRASRRSLGEQDASENSKAIGISRLRFVDQHIRQQRALQQLGMMQQHAWRPQRGLPESSVSVLRAWLFEHFLHPYPKDSEKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEAGDAKIDSNSSSEVAPRLASKDSKVEERGELHQNTASEFEQYNSGQILESKSY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="85843" e_stop="86228"/>
            <exon e_start="86361" e_stop="86421"/>
            <exon e_start="86978" e_stop="87318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.992" e_score="0.990"/>
          <exon-intron don_prob="0.926" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="85843" e_stop="86228" e_length="386"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.992">
            <gDNA_intron_boundary i_start="86229" i_stop="86360" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86361" e_stop="86421" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.989">
            <gDNA_intron_boundary i_start="86422" i_stop="86977" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="86978" e_stop="87318" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85843" stop="86228"/>
              <exon start="86361" stop="86421"/>
              <exon start="86978" stop="87318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACAGATTGATAGAAGGTACAGACAATATTATCATCAGATGCAAATAGTGGTCTCATCATTTGATGTAGTAGCTGGAGATGGAGCAGCAAAACCATACACAGCTCTTGCTCTTCAGACAATTTCCAGACACTTTCGTTGCTTGCGTGATGCAATCTGCGATCAGATTCGAGCATCACGAAGAAGTCTTGGAGAGCAAGATGCTTCAGAAAACAGCAAAGCGATTGGAATATCACGCCTGCGTTTTGTGGATCAGCATATTAGACAGCAGAGAGCCCTGCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCTCAGAGGGGATTGCCTGAAAGCTCTGTTTCAGTTTTGCGTGCTTGGCTCTTTGAGCACTTTCTTCATCC : CTACCCGAAAGATTCTGAAAAAATTATGCTAGCAAGGCAAACTGGCTTAACGAGAAGTCAG : GTATCAAATTGGTTCATAAATGCACGAGTTCGTCTTTGGAAACCCATGGTTGAGGAAATGTACAAAGAAGAGGCTGGTGATGCTAAGATAGACTCAAATTCTTCATCAGAGGTTGCCCCCAGACTTGCATCAAAAGACTCAAAAGTTGAAGAAAGAGGAGAATTGCACCAGAATACAGCTTCAGAATTTGAGCAGTACAATAGTGGCCAAATCCTGGAGTCAAAATCTTACCATGAAGCTGATGCAGAAATGGAGGGAGCAAGTAATGCAGAAACTCAAAGTCAATCTGGAATGGAAAATCAAACAGAGGAACCCCTGCCTGCTATGGATAATTGCACCCT</gDNA_template>
            <first_frame> S  Q  I  D  R  R  Y  R  Q  Y  Y  H  Q  M  Q  I  V  V  S  S  F  D  V  V  A  G  D  G  A  A  K  P  Y  T  A  L  A  L  Q  T  I  S  R  H  F  R  C  L  R  D  A  I  C  D  Q  I  R  A  S  R  R  S  L  G  E  Q  D  A  S  E  N  S  K  A  I  G  I  S  R  L  R  F  V  D  Q  H  I  R  Q  Q  R  A  L  Q  Q  L  G  M  M  Q  Q  H  A  W  R  P  Q  R  G  L  P  E  S  S  V  S  V  L  R  A  W  L  F  E  H  F  L  H  P :   Y  P  K  D  S  E  K  I  M  L  A  R  Q  T  G  L  T  R  S  Q  :  V  S  N  W  F  I  N  A  R  V  R  L  W  K  P  M  V  E  E  M  Y  K  E  E  A  G  D  A  K  I  D  S  N  S  S  S  E  V  A  P  R  L  A  S  K  D  S  K  V  E  E  R  G  E  L  H  Q  N  T  A  S  E  F  E  Q  Y  N  S  G  Q  I  L  E  S  K  S  Y  H  E  A  D  A  E  M  E  G  A  S  N  A  E  T  Q  S  Q  S  G  M  E  N  Q  T  E  E  P  L  P  A  M  D  N  C  T   </first_frame>
            <second_frame>  H  R  L  I  E  G  T  D  N  I  I  I  R  C  K  *  W  S  H  H  L  M  *  *  L  E  M  E  Q  Q  N  H  T  Q  L  L  L  F  R  Q  F  P  D  T  F  V  A  C  V  M  Q  S  A  I  R  F  E  H  H  E  E  V  L  E  S  K  M  L  Q  K  T  A  K  R  L  E  Y  H  A  C  V  L  W  I  S  I  L  D  S  R  E  P  C  S  S  L  V  *  C  N  N  M  P  G  G  L  R  G  D  C  L  K  A  L  F  Q  F  C  V  L  G  S  L  S  T  F  F  I   : P  T  R  K  I  L  K  K  L  C  *  Q  G  K  L  A  *  R  E  V  R :   Y  Q  I  G  S  *  M  H  E  F  V  F  G  N  P  W  L  R  K  C  T  K  K  R  L  V  M  L  R  *  T  Q  I  L  H  Q  R  L  P  P  D  L  H  Q  K  T  Q  K  L  K  K  E  E  N  C  T  R  I  Q  L  Q  N  L  S  S  T  I  V  A  K  S  W  S  Q  N  L  T  M  K  L  M  Q  K  W  R  E  Q  V  M  Q  K  L  K  V  N  L  E  W  K  I  K  Q  R  N  P  C  L  L  W  I  I  A  P  </second_frame>
            <third_frame>   T  D  *  *  K  V  Q  T  I  L  S  S  D  A  N  S  G  L  I  I  *  C  S  S  W  R  W  S  S  K  T  I  H  S  S  C  S  S  D  N  F  Q  T  L  S  L  L  A  *  C  N  L  R  S  D  S  S  I  T  K  K  S  W  R  A  R  C  F  R  K  Q  Q  S  D  W  N  I  T  P  A  F  C  G  S  A  Y  *  T  A  E  S  P  A  A  A  W  Y  D  A  T  T  C  L  E  A  S  E  G  I  A  *  K  L  C  F  S  F  A  C  L  A  L  *  A  L  S  S  S  :  L  P  E  R  F  *  K  N  Y  A  S  K  A  N  W  L  N  E  K  S   : G  I  K  L  V  H  K  C  T  S  S  S  L  E  T  H  G  *  G  N  V  Q  R  R  G  W  *  C  *  D  R  L  K  F  F  I  R  G  C  P  Q  T  C  I  K  R  L  K  S  *  R  K  R  R  I  A  P  E  Y  S  F  R  I  *  A  V  Q  *  W  P  N  P  G  V  K  I  L  P  *  S  *  C  R  N  G  G  S  K  *  C  R  N  S  K  S  I  W  N  G  K  S  N  R  G  T  P  A  C  Y  G  *  L  H  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85843" stop="86228"/>
                    <exon start="86361" stop="86421"/>
                    <exon start="86978" stop="87316"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIDRRYRQYYHQMQIVVSSFDVVAGDGAAKPYTALALQTISRHFRCLRDAICDQIRASRRSLGEQDASENSKAIGISRLRFVDQHIRQQRALQQLGMMQQHAWRPQRGLPESSVSVLRAWLFEHFLHPYPKDSEKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEAGDAKIDSNSSSEVAPRLASKDSKVEERGELHQNTASEFEQYNSGQILESKSYHEADAEMEGASNAETQSQSGMENQTEEPLPAMDNCT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="89144" PGL_stop="88621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89144" e_stop="88621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="89144" e_stop="88621" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89144" stop="88621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTGATACTCTATTAGAGAATTTGGAATTGAGGGAAGGAGTGAAGGCCAAATTCTACCTGAATCTGCTGCAGCTGTGTGAAACAAAAGGTGAAAAAATGTTAGTGTTTAGCCAATACCTCTTGCCTTTGAAATTCTTGGAGAGGTTGACTGTTAAGACTAAGGGTTACAGTTTGGGGAAGGAACTATTTATGATCACTGGTGATACAGACGGGGACATCAGGGAGTCCTCAATGGAGCGATTTAACACTTCACCGGATGCTCGTGTTTTCTTTGGTTCAATTAAGGCATGTGGTGAAGGAATATCACTTGTCGGGGCATCGCGGATTATCATATTGGATGTGCATCTCAACCCATCAGTAACCCGTCAAGCAATAGGACGTGCATTCCGACCAGGCCAGGAGAGGAAAGTATACACTTACAGATTGGTGGCCTCAGATTCACCTGAGGAGGAAGATCATACAACTTGTTTTAAAAAGGAGTCTATTGCAAAGTTATGGTTCGAGTGGAGTGAGAATTATGCT</gDNA_template>
            <first_frame> K  L  I  L  Y  *  R  I  W  N  *  G  K  E  *  R  P  N  S  T  *  I  C  C  S  C  V  K  Q  K  V  K  K  C  *  C  L  A  N  T  S  C  L  *  N  S  W  R  G  *  L  L  R  L  R  V  T  V  W  G  R  N  Y  L  *  S  L  V  I  Q  T  G  T  S  G  S  P  Q  W  S  D  L  T  L  H  R  M  L  V  F  S  L  V  Q  L  R  H  V  V  K  E  Y  H  L  S  G  H  R  G  L  S  Y  W  M  C  I  S  T  H  Q  *  P  V  K  Q  *  D  V  H  S  D  Q  A  R  R  G  K  Y  T  L  T  D  W  W  P  Q  I  H  L  R  R  K  I  I  Q  L  V  L  K  R  S  L  L  Q  S  Y  G  S  S  G  V  R  I  M   </first_frame>
            <second_frame>  N  *  Y  S  I  R  E  F  G  I  E  G  R  S  E  G  Q  I  L  P  E  S  A  A  A  V  *  N  K  R  *  K  N  V  S  V  *  P  I  P  L  A  F  E  I  L  G  E  V  D  C  *  D  *  G  L  Q  F  G  E  G  T  I  Y  D  H  W  *  Y  R  R  G  H  Q  G  V  L  N  G  A  I  *  H  F  T  G  C  S  C  F  L  W  F  N  *  G  M  W  *  R  N  I  T  C  R  G  I  A  D  Y  H  I  G  C  A  S  Q  P  I  S  N  P  S  S  N  R  T  C  I  P  T  R  P  G  E  E  S  I  H  L  Q  I  G  G  L  R  F  T  *  G  G  R  S  Y  N  L  F  *  K  G  V  Y  C  K  V  M  V  R  V  E  *  E  L  C  </second_frame>
            <third_frame>   I  D  T  L  L  E  N  L  E  L  R  E  G  V  K  A  K  F  Y  L  N  L  L  Q  L  C  E  T  K  G  E  K  M  L  V  F  S  Q  Y  L  L  P  L  K  F  L  E  R  L  T  V  K  T  K  G  Y  S  L  G  K  E  L  F  M  I  T  G  D  T  D  G  D  I  R  E  S  S  M  E  R  F  N  T  S  P  D  A  R  V  F  F  G  S  I  K  A  C  G  E  G  I  S  L  V  G  A  S  R  I  I  I  L  D  V  H  L  N  P  S  V  T  R  Q  A  I  G  R  A  F  R  P  G  Q  E  R  K  V  Y  T  Y  R  L  V  A  S  D  S  P  E  E  E  D  H  T  T  C  F  K  K  E  S  I  A  K  L  W  F  E  W  S  E  N  Y  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89142" stop="88621"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDTLLENLELREGVKAKFYLNLLQLCETKGEKMLVFSQYLLPLKFLERLTVKTKGYSLGKELFMITGDTDGDIRESSMERFNTSPDARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQERKVYTYRLVASDSPEEEDHTTCFKKESIAKLWFEWSENYA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="89785" PGL_stop="89234"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89785" e_stop="89234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="89785" e_stop="89234" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89785" stop="89234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACAATGTTGGTAGTGCGACTGCAGCTGCTTGTCAGGAGATTCTGCTGAAGTGCCCGTCAATTCTCATTCTTGATGAAGGTCACACTCCGCGCAACCAAGACACTGATGTTTTGACTTCACTTGAGAAGGTCCAGACACGCCTGAAGGTGGTGCTTTCTGGCACATTATACCAAAATCATGTTAAAGAGGTCTTTAACATTCTGAACCTTGTGCGTCCAAAATTTCTCAAGCTGGAAACATCCAGAAGCATTAAAAGGACAATCCTAAGCAAAGTGGCAAGCTCAAATAGAAGGAACCTCCTGAAGAAAAGTAGTGACAATGATTTTTATGAGCTCGTGGAGCATACACTTTTAAAGGATGACAATTTCTCAAGGAAGAGTGCTGTCATACTAGGTCTGCGTAAAATGACCGAAAAAGTGCTTCATTATTACAAGGGAGATTTCCTCGAAGAACTTCCAGGTTTGGTGGATTACACTGTCCTTCTAAAGCTCCATCCTAAGCAGAAAAGTGAAGTTGCAGAGCTGAAAAAACTGGGAAGAAAGTTCAAAAT</gDNA_template>
            <first_frame> *  Q  C  W  *  C  D  C  S  C  L  S  G  D  S  A  E  V  P  V  N  S  H  S  *  *  R  S  H  S  A  Q  P  R  H  *  C  F  D  F  T  *  E  G  P  D  T  P  E  G  G  A  F  W  H  I  I  P  K  S  C  *  R  G  L  *  H  S  E  P  C  A  S  K  I  S  Q  A  G  N  I  Q  K  H  *  K  D  N  P  K  Q  S  G  K  L  K  *  K  E  P  P  E  E  K  *  *  Q  *  F  L  *  A  R  G  A  Y  T  F  K  G  *  Q  F  L  K  E  E  C  C  H  T  R  S  A  *  N  D  R  K  S  A  S  L  L  Q  G  R  F  P  R  R  T  S  R  F  G  G  L  H  C  P  S  K  A  P  S  *  A  E  K  *  S  C  R  A  E  K  T  G  K  K  V  Q  N </first_frame>
            <second_frame>  D  N  V  G  S  A  T  A  A  A  C  Q  E  I  L  L  K  C  P  S  I  L  I  L  D  E  G  H  T  P  R  N  Q  D  T  D  V  L  T  S  L  E  K  V  Q  T  R  L  K  V  V  L  S  G  T  L  Y  Q  N  H  V  K  E  V  F  N  I  L  N  L  V  R  P  K  F  L  K  L  E  T  S  R  S  I  K  R  T  I  L  S  K  V  A  S  S  N  R  R  N  L  L  K  K  S  S  D  N  D  F  Y  E  L  V  E  H  T  L  L  K  D  D  N  F  S  R  K  S  A  V  I  L  G  L  R  K  M  T  E  K  V  L  H  Y  Y  K  G  D  F  L  E  E  L  P  G  L  V  D  Y  T  V  L  L  K  L  H  P  K  Q  K  S  E  V  A  E  L  K  K  L  G  R  K  F  K   </second_frame>
            <third_frame>   T  M  L  V  V  R  L  Q  L  L  V  R  R  F  C  *  S  A  R  Q  F  S  F  L  M  K  V  T  L  R  A  T  K  T  L  M  F  *  L  H  L  R  R  S  R  H  A  *  R  W  C  F  L  A  H  Y  T  K  I  M  L  K  R  S  L  T  F  *  T  L  C  V  Q  N  F  S  S  W  K  H  P  E  A  L  K  G  Q  S  *  A  K  W  Q  A  Q  I  E  G  T  S  *  R  K  V  V  T  M  I  F  M  S  S  W  S  I  H  F  *  R  M  T  I  S  Q  G  R  V  L  S  Y  *  V  C  V  K  *  P  K  K  C  F  I  I  T  R  E  I  S  S  K  N  F  Q  V  W  W  I  T  L  S  F  *  S  S  I  L  S  R  K  V  K  L  Q  S  *  K  N  W  E  E  S  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89784" stop="89236"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNVGSATAAACQEILLKCPSILILDEGHTPRNQDTDVLTSLEKVQTRLKVVLSGTLYQNHVKEVFNILNLVRPKFLKLETSRSIKRTILSKVASSNRRNLLKKSSDNDFYELVEHTLLKDDNFSRKSAVILGLRKMTEKVLHYYKGDFLEELPGLVDYTVLLKLHPKQKSEVAELKKLGRKFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="90855" PGL_stop="90005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90855" e_stop="90828"/>
            <exon e_start="90285" e_stop="90005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.624" acc_prob="0.869" e_score="0.964"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="90855" e_stop="90828" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.624" acc_prob="0.869">
            <gDNA_intron_boundary i_start="90827" i_stop="90286" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="90285" e_stop="90005" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90855" stop="90828"/>
              <exon start="90285" stop="90005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCATCATAGAATTTCAGTATTCGAAG : GCCGCCAGGAGTACAAGAACATATCACTATGAAGGTCGGTCGGTAAAGGATATAGGGCCTACTGAACTCCTTCCTGATGGCATCATTCCATCTGATGACATTGATATGACGGAAATTTGTGTTCATCCAAGACATAGGAAACAAATGAAATCTCACCAAGTTGAGGGATTTAATTTTCTTGTTAGCAACTTGTTGAGAGATAAAGGAGGCTGTATCATGGCTCATGCCCCTGGATCTGGCAAGACTTTCATGATAATCAGCTTCCTACAAAGCTTCATGGC</gDNA_template>
            <first_frame> N  H  H  R  I  S  V  F  E   : G  R  Q  E  Y  K  N  I  S  L  *  R  S  V  G  K  G  Y  R  A  Y  *  T  P  S  *  W  H  H  S  I  *  *  H  *  Y  D  G  N  L  C  S  S  K  T  *  E  T  N  E  I  S  P  S  *  G  I  *  F  S  C  *  Q  L  V  E  R  *  R  R  L  Y  H  G  S  C  P  W  I  W  Q  D  F  H  D  N  Q  L  P  T  K  L  H  G </first_frame>
            <second_frame>  T  I  I  E  F  Q  Y  S  K  :  A  A  R  S  T  R  T  Y  H  Y  E  G  R  S  V  K  D  I  G  P  T  E  L  L  P  D  G  I  I  P  S  D  D  I  D  M  T  E  I  C  V  H  P  R  H  R  K  Q  M  K  S  H  Q  V  E  G  F  N  F  L  V  S  N  L  L  R  D  K  G  G  C  I  M  A  H  A  P  G  S  G  K  T  F  M  I  I  S  F  L  Q  S  F  M   </second_frame>
            <third_frame>   P  S  *  N  F  S  I  R  R :   P  P  G  V  Q  E  H  I  T  M  K  V  G  R  *  R  I  *  G  L  L  N  S  F  L  M  A  S  F  H  L  M  T  L  I  *  R  K  F  V  F  I  Q  D  I  G  N  K  *  N  L  T  K  L  R  D  L  I  F  L  L  A  T  C  *  E  I  K  E  A  V  S  W  L  M  P  L  D  L  A  R  L  S  *  *  S  A  S  Y  K  A  S  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90854" stop="90828"/>
                    <exon start="90285" stop="90007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIIEFQYSKAARSTRTYHYEGRSVKDIGPTELLPDGIIPSDDIDMTEICVHPRHRKQMKSHQVEGFNFLVSNLLRDKGGCIMAHAPGSGKTFMIISFLQSFM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="95947" PGL_stop="93899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95947" e_stop="95843"/>
            <exon e_start="95485" e_stop="95402"/>
            <exon e_start="94206" e_stop="93899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="0.962"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="0.964"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="95947" e_stop="95843" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="95842" i_stop="95486" i_length="357"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="95485" e_stop="95402" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="95401" i_stop="94207" i_length="1195"/>
          </intron>
          <exon e_serial="3" e_score="0.948">
            <gDNA_exon_boundary e_start="94206" e_stop="93899" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95947" stop="95843"/>
              <exon start="95485" stop="95402"/>
              <exon start="94206" stop="93899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAATAGTCGACGGCACCATTTTCAGCCAAGTGCCAACGCCTTCTGTCACCTGCAAATCTCACCTATTTTTCTTCATCAGTCTGCTCTACCAGTAACTCTTCAG : TGAAAATGGACTTAGCAACGGAAGGATGGCGGAACAATTTTGCTAAACCAATGGCGAAAAGGGCTCAGCCGTACAGCCCCAGAG : ATTTGTTTTCCAAGGGGATAAAAAAGATGAAATTTGATGAAAGTAAAAACCAGAGTAGTCCTACTGCAGCTGCCACTAGTTGGCGGGAAGAATGCGAACATGGAAAAGAAAAGGGGTCTTCAAGAGTTGCCAACCGCTCCGAAACTTTTGCAATTCCAGACTTGCTCAAAGTGTTAGATTCCGGCAAATTTGGAAGTGTCACCAGAGAGATTGAGGACCTTATTATGCGGCGAATGAAGGCAGTGAACTCTTGTTATGCAAGTGACCCTTCTCTTCCCAACAAAGTCTTGGAATGGGAAAGGAACCAT</gDNA_template>
            <first_frame> E  N  S  R  R  H  H  F  Q  P  S  A  N  A  F  C  H  L  Q  I  S  P  I  F  L  H  Q  S  A  L  P  V  T  L  Q  :  *  K  W  T  *  Q  R  K  D  G  G  T  I  L  L  N  Q  W  R  K  G  L  S  R  T  A  P  E  :  I  C  F  P  R  G  *  K  R  *  N  L  M  K  V  K  T  R  V  V  L  L  Q  L  P  L  V  G  G  K  N  A  N  M  E  K  K  R  G  L  Q  E  L  P  T  A  P  K  L  L  Q  F  Q  T  C  S  K  C  *  I  P  A  N  L  E  V  S  P  E  R  L  R  T  L  L  C  G  E  *  R  Q  *  T  L  V  M  Q  V  T  L  L  F  P  T  K  S  W  N  G  K  G  T   </first_frame>
            <second_frame>  R  I  V  D  G  T  I  F  S  Q  V  P  T  P  S  V  T  C  K  S  H  L  F  F  F  I  S  L  L  Y  Q  *  L  F  S :   E  N  G  L  S  N  G  R  M  A  E  Q  F  C  *  T  N  G  E  K  G  S  A  V  Q  P  Q  R :   F  V  F  Q  G  D  K  K  D  E  I  *  *  K  *  K  P  E  *  S  Y  C  S  C  H  *  L  A  G  R  M  R  T  W  K  R  K  G  V  F  K  S  C  Q  P  L  R  N  F  C  N  S  R  L  A  Q  S  V  R  F  R  Q  I  W  K  C  H  Q  R  D  *  G  P  Y  Y  A  A  N  E  G  S  E  L  L  L  C  K  *  P  F  S  S  Q  Q  S  L  G  M  G  K  E  P  </second_frame>
            <third_frame>   E  *  S  T  A  P  F  S  A  K  C  Q  R  L  L  S  P  A  N  L  T  Y  F  S  S  S  V  C  S  T  S  N  S  S   : V  K  M  D  L  A  T  E  G  W  R  N  N  F  A  K  P  M  A  K  R  A  Q  P  Y  S  P  R   : D  L  F  S  K  G  I  K  K  M  K  F  D  E  S  K  N  Q  S  S  P  T  A  A  A  T  S  W  R  E  E  C  E  H  G  K  E  K  G  S  S  R  V  A  N  R  S  E  T  F  A  I  P  D  L  L  K  V  L  D  S  G  K  F  G  S  V  T  R  E  I  E  D  L  I  M  R  R  M  K  A  V  N  S  C  Y  A  S  D  P  S  L  P  N  K  V  L  E  W  E  R  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95939" stop="95843"/>
                    <exon start="95485" stop="95402"/>
                    <exon start="94206" stop="93899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STAPFSAKCQRLLSPANLTYFSSSVCSTSNSSVKMDLATEGWRNNFAKPMAKRAQPYSPRDLFSKGIKKMKFDESKNQSSPTAAATSWREECEHGKEKGSSRVANRSETFAIPDLLKVLDSGKFGSVTREIEDLIMRRMKAVNSCYASDPSLPNKVLEWERNH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="98748" PGL_stop="103089"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98748" e_stop="98971"/>
            <exon e_start="99074" e_stop="99163"/>
            <exon e_start="101861" e_stop="101944"/>
            <exon e_start="102031" e_stop="102249"/>
            <exon e_start="102992" e_stop="103089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98748" e_stop="98971" e_length="224"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="98972" i_stop="99073" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99074" e_stop="99163" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="99164" i_stop="101860" i_length="2697"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101861" e_stop="101944" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.871" acc_prob="0.986">
            <gDNA_intron_boundary i_start="101945" i_stop="102030" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102031" e_stop="102249" e_length="219"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102250" i_stop="102991" i_length="742"/>
          </intron>
          <exon e_serial="5" e_score="0.969">
            <gDNA_exon_boundary e_start="102992" e_stop="103089" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98748" stop="98971"/>
              <exon start="99074" stop="99163"/>
              <exon start="101861" stop="101944"/>
              <exon start="102031" stop="102249"/>
              <exon start="102992" stop="103089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98766" stop="98971"/>
              <exon start="99074" stop="99163"/>
              <exon start="101861" stop="101944"/>
              <exon start="102031" stop="102249"/>
              <exon start="102992" stop="103039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCAAATAACTTGGTTTTCTTTTTCACTTTGGCGCCCTTTCCGCTAAAATCCCTCAAGATTCCTCTCACTGTTTCACCTCTTTCTCGCTTCCGATTCCCATTCCCCTTGTACCTTTTTCTATGTAGTCAACTCATACTGTTTTCATAAAGCATAACTTGTATCTCTTCCGTATCTATCTCTCTTTCTCAAATGGCTTCCGAGGAACACTTGTCTGCAATTAAG : GGTGCTAAAGTGCTCATGGTTGGTGCTGGTGGTATTGGGTGTGAGTTGCTTAAAACCCTTGCTCTTTCTGGGTTCGAAGACATTCACATA : ATTGACATGGATACAATAGAAGTCAGTAACCTAAATAGACAGTTCTTGTTTCGACAAAAACATGTTGGTCAATCTAAGGCTAAA : GTTGCTAGAGACGCTGTCCTAAGATTTAGGCCTCATATTAAAATTACACCATACCATGCAAATGTAAAAGATCCAGAGTTCAATGTGGATTTTTTCAAGCAATTCAATGTTGTGCTTAATGGTCTTGACAATCTAGATGCTAGGCGACATGTGAATCGCCTTTGTTTGGCATCTGGTGTCCCATTAGTTGAAAGTGGGACTACAGGCTTCCTTGGCCAG : GTCACGGTACATGTGAAAGGTAAAACAGAATGCTATGAATGTCAATCTAAACCAGCTCCAAAAACTTACCCTGTCTGTACAATCACAAGCACTCCAAC</gDNA_template>
            <first_frame> S  Q  I  T  W  F  S  F  S  L  W  R  P  F  R  *  N  P  S  R  F  L  S  L  F  H  L  F  L  A  S  D  S  H  S  P  C  T  F  F  Y  V  V  N  S  Y  C  F  H  K  A  *  L  V  S  L  P  Y  L  S  L  F  L  K  W  L  P  R  N  T  C  L  Q  L  R :   V  L  K  C  S  W  L  V  L  V  V  L  G  V  S  C  L  K  P  L  L  F  L  G  S  K  T  F  T  * :   L  T  W  I  Q  *  K  S  V  T  *  I  D  S  S  C  F  D  K  N  M  L  V  N  L  R  L  K :   L  L  E  T  L  S  *  D  L  G  L  I  L  K  L  H  H  T  M  Q  M  *  K  I  Q  S  S  M  W  I  F  S  S  N  S  M  L  C  L  M  V  L  T  I  *  M  L  G  D  M  *  I  A  F  V  W  H  L  V  S  H  *  L  K  V  G  L  Q  A  S  L  A  R :   S  R  Y  M  *  K  V  K  Q  N  A  M  N  V  N  L  N  Q  L  Q  K  L  T  L  S  V  Q  S  Q  A  L  Q  </first_frame>
            <second_frame>  P  K  *  L  G  F  L  F  H  F  G  A  L  S  A  K  I  P  Q  D  S  S  H  C  F  T  S  F  S  L  P  I  P  I  P  L  V  P  F  S  M  *  S  T  H  T  V  F  I  K  H  N  L  Y  L  F  R  I  Y  L  S  F  S  N  G  F  R  G  T  L  V  C  N  *   : G  C  *  S  A  H  G  W  C  W  W  Y  W  V  *  V  A  *  N  P  C  S  F  W  V  R  R  H  S  H   : N  *  H  G  Y  N  R  S  Q  *  P  K  *  T  V  L  V  S  T  K  T  C  W  S  I  *  G  *   : S  C  *  R  R  C  P  K  I  *  A  S  Y  *  N  Y  T  I  P  C  K  C  K  R  S  R  V  Q  C  G  F  F  Q  A  I  Q  C  C  A  *  W  S  *  Q  S  R  C  *  A  T  C  E  S  P  L  F  G  I  W  C  P  I  S  *  K  W  D  Y  R  L  P  W  P   : G  H  G  T  C  E  R  *  N  R  M  L  *  M  S  I  *  T  S  S  K  N  L  P  C  L  Y  N  H  K  H  S  N </second_frame>
            <third_frame>   P  N  N  L  V  F  F  F  T  L  A  P  F  P  L  K  S  L  K  I  P  L  T  V  S  P  L  S  R  F  R  F  P  F  P  L  Y  L  F  L  C  S  Q  L  I  L  F  S  *  S  I  T  C  I  S  S  V  S  I  S  L  S  Q  M  A  S  E  E  H  L  S  A  I  K  :  G  A  K  V  L  M  V  G  A  G  G  I  G  C  E  L  L  K  T  L  A  L  S  G  F  E  D  I  H  I  :  I  D  M  D  T  I  E  V  S  N  L  N  R  Q  F  L  F  R  Q  K  H  V  G  Q  S  K  A  K  :  V  A  R  D  A  V  L  R  F  R  P  H  I  K  I  T  P  Y  H  A  N  V  K  D  P  E  F  N  V  D  F  F  K  Q  F  N  V  V  L  N  G  L  D  N  L  D  A  R  R  H  V  N  R  L  C  L  A  S  G  V  P  L  V  E  S  G  T  T  G  F  L  G  Q  :  V  T  V  H  V  K  G  K  T  E  C  Y  E  C  Q  S  K  P  A  P  K  T  Y  P  V  C  T  I  T  S  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98897" stop="98971"/>
                    <exon start="99074" stop="99163"/>
                    <exon start="101861" stop="101944"/>
                    <exon start="102031" stop="102249"/>
                    <exon start="102992" stop="103087"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITCISSVSISLSQMASEEHLSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRQKHVGQSKAKVARDAVLRFRPHIKITPYHANVKDPEFNVDFFKQFNVVLNGLDNLDARRHVNRLCLASGVPLVESGTTGFLGQVTVHVKGKTECYECQSKPAPKTYPVCTITSTP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="103642" PGL_stop="105527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103642" e_stop="103710"/>
            <exon e_start="103898" e_stop="104127"/>
            <exon e_start="105136" e_stop="105229"/>
            <exon e_start="105332" e_stop="105527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103642" e_stop="103710" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103711" i_stop="103897" i_length="187"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103898" e_stop="104127" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="104128" i_stop="105135" i_length="1008"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105136" e_stop="105229" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.957">
            <gDNA_intron_boundary i_start="105230" i_stop="105331" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="105332" e_stop="105527" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103642" stop="103710"/>
              <exon start="103898" stop="104127"/>
              <exon start="105136" stop="105229"/>
              <exon start="105332" stop="105417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103656" stop="103710"/>
              <exon start="103898" stop="104127"/>
              <exon start="105136" stop="105229"/>
              <exon start="105332" stop="105527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276151" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGTCTTAGGGAAAATTCTGAAGTATTTCTCGAGGCATTAAGGCTCTTTTTCTCGAAAAGAGAGAAG : GAAATTGGCCAGTTGGGTTTTGATAAGGACGACCAGTTGGCTGTAGAGTTTGTCACTTCTGCAGCAAACATTCGTGCCGCTTCTTTTGGAATTCCATTACATAGCCTTTTTGAAGCTAAAGGTATTGCTGGCAATATTGTTCATGCCGTTGCAACAACAAATGCCATCATTGCAGGCTTGATTGTCCTTGAGGCAATCAAGGTGTTGCAAAATGATGTAAAAAGCTACAG : GATGACTTATTGCCTTGAACATCCGTCAAGAAAGATGCTTCTCATGCCAGTGGAGCCCTTCGAGCCAAACAAGTCTTGTTATGTTTGTTCCGAG : ACACCTTTAACGCTTGAGATTAATACTCATCGTTCGAAGTTGAGGGATTTTGTTGACAAGATTGTCAAAGAAAAACTTGGCATGAGCCTCCCATTGATCATGCATGGGGTGGCACTTCTTTATGAGGTGGGCGATGATCTTGAGGAAGATGAGGTTGCAAATTATGCAGCAAACCTTGACAAGGTAAGACACTGTC</gDNA_template>
            <first_frame> W  S  L  R  E  N  S  E  V  F  L  E  A  L  R  L  F  F  S  K  R  E  K  :  E  I  G  Q  L  G  F  D  K  D  D  Q  L  A  V  E  F  V  T  S  A  A  N  I  R  A  A  S  F  G  I  P  L  H  S  L  F  E  A  K  G  I  A  G  N  I  V  H  A  V  A  T  T  N  A  I  I  A  G  L  I  V  L  E  A  I  K  V  L  Q  N  D  V  K  S  Y  R :   M  T  Y  C  L  E  H  P  S  R  K  M  L  L  M  P  V  E  P  F  E  P  N  K  S  C  Y  V  C  S  E  :  T  P  L  T  L  E  I  N  T  H  R  S  K  L  R  D  F  V  D  K  I  V  K  E  K  L  G  M  S  L  P  L  I  M  H  G  V  A  L  L  Y  E  V  G  D  D  L  E  E  D  E  V  A  N  Y  A  A  N  L  D  K  V  R  H  C  </first_frame>
            <second_frame>  G  V  L  G  K  I  L  K  Y  F  S  R  H  *  G  S  F  S  R  K  E  R  R :   K  L  A  S  W  V  L  I  R  T  T  S  W  L  *  S  L  S  L  L  Q  Q  T  F  V  P  L  L  L  E  F  H  Y  I  A  F  L  K  L  K  V  L  L  A  I  L  F  M  P  L  Q  Q  Q  M  P  S  L  Q  A  *  L  S  L  R  Q  S  R  C  C  K  M  M  *  K  A  T   : G  *  L  I  A  L  N  I  R  Q  E  R  C  F  S  C  Q  W  S  P  S  S  Q  T  S  L  V  M  F  V  P  R :   H  L  *  R  L  R  L  I  L  I  V  R  S  *  G  I  L  L  T  R  L  S  K  K  N  L  A  *  A  S  H  *  S  C  M  G  W  H  F  F  M  R  W  A  M  I  L  R  K  M  R  L  Q  I  M  Q  Q  T  L  T  R  *  D  T  V </second_frame>
            <third_frame>   E  S  *  G  K  F  *  S  I  S  R  G  I  K  A  L  F  L  E  K  R  E   : G  N  W  P  V  G  F  *  *  G  R  P  V  G  C  R  V  C  H  F  C  S  K  H  S  C  R  F  F  W  N  S  I  T  *  P  F  *  S  *  R  Y  C  W  Q  Y  C  S  C  R  C  N  N  K  C  H  H  C  R  L  D  C  P  *  G  N  Q  G  V  A  K  *  C  K  K  L  Q  :  D  D  L  L  P  *  T  S  V  K  K  D  A  S  H  A  S  G  A  L  R  A  K  Q  V  L  L  C  L  F  R   : D  T  F  N  A  *  D  *  Y  S  S  F  E  V  E  G  F  C  *  Q  D  C  Q  R  K  T  W  H  E  P  P  I  D  H  A  W  G  G  T  S  L  *  G  G  R  *  S  *  G  R  *  G  C  K  L  C  S  K  P  *  Q  G  K  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0131F15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103642" stop="103710"/>
                    <exon start="103898" stop="104127"/>
                    <exon start="105136" stop="105229"/>
                    <exon start="105332" stop="105526"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSLRENSEVFLEALRLFFSKREKEIGQLGFDKDDQLAVEFVTSAANIRAASFGIPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVLEAIKVLQNDVKSYRMTYCLEHPSRKMLLMPVEPFEPNKSCYVCSETPLTLEINTHRSKLRDFVDKIVKEKLGMSLPLIMHGVALLYEVGDDLEEDEVANYAANLDKVRHC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 100 chains have been computed
$ 
$ memory statistics:
$ 172776 bytes spliced alignments in total
$ 79 spliced alignments have been stored
$ 2187 bytes was the average size of a spliced alignment
$ 26616 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1774 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 115 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:40:40
-->
