<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:09:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="1521" stop="5334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1821" g_stop="2068" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2069" i_stop="2415" i_length="347">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2416" g_stop="2464" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="294" r_length="46" r_score="0.571"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2465" i_stop="3334" i_length="870">
            <donor d_prob="0.451" d_score="0.57"/>
            <acceptor a_prob="0.426" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3335" g_stop="3361" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="321" r_length="27" r_score="0.519"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3362" i_stop="4599" i_length="1238">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4600" g_stop="5034" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="753" r_length="432" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1821" e_stop="2068"/>
          <exon e_start="2416" e_stop="2464"/>
          <exon e_start="3335" e_stop="3361"/>
          <exon e_start="4600" e_stop="5034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGATCACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTGATTGACTGGCAGTAGTTCATCATTTATAATTAAAGCAGGAATAGTCAAAAACGCCCTTTAAAACGTATAAGGAAATCCGATCCAGACTGGGATTACGCAGTTTGTGACAGCCCGTCGTGCCTGCGACGGTCTGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCATCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTTGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTTGTTACATTAGATACCAATTTACCCATCGTTCGTCCCCGAACGATCACAAGAAGGAAAATAAGGGGAAAAGGAGTACCTGAATCTGTGAACAGGTGTGGATATCTTTCTCGCAAATACTCTTAACATGTTGTAATATTGTTCGTTAGATTCATTAGCTGGGAAAATTTCTCCTCATTGTTTTTGTCCATGTTAATTAAAATCTTATATGTTACTGGTTTTCATGAGCCAACATGAACAAGAAAAAATTGCTTAAGAATTGGTAGGGGCTGCGCGAACGCAAGACCCCACTGCAACAAATTATGACGTAGGCTCGACCACTTGGATCGACCTTAGGTAGGCACCCCTCCAAAGTGCAATGGAGGTCACAAGCCTAGGCCATGGGTCTTACTGATCGCCCATCGACCCCGTCCAGGTAAGTATGTTTCTAGTTGCTCCTTCCTATTCTTTTATACCCATCTTTATACTTGTTTTTCTTGTCTCAACCGATGAGGGATATATTGTTACTTCATCTCTTTTTTTCTCTTTTTTTTTTCCATTTAATTGCAAACAAGACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACCTCAGGATTTTCCAACCCTTTTCTAAACTCATTAATAATTGACAAGTCATTAGGGTCAGTGACAGTGAAAACAAGTGAAGCAAAAGCAAGAAACAAAGCTACAACAAACCATATGTGGTGAAAATATAACTCCATAGATGATCCACAAAGCAGTAATTATATTAATCTCTTAAAAAGTAACACAAACTGAATACACTAATATGTAGCTCGGATACATTA-CAGAGTATTCGCATGCATTATAACATAAATCAGATACATAATATGTAGCTCAAATACATTAAAAACTAGTCCGGATACATTATATAATAATAGGGAGAATGATTAGTTAAGCCAATAAAAAAAAGGTGAAGGAGATAGTAAATGAAAGAAAAGGACATTTGTTTTTTTCTTCTATGTGTTTAGCTCCCAAATGATATCCTTAAATAGGAAAATTATTTACATTTTCATCCATTAAAAGAATGTAAGAAACTAACGTATAATCTACCAAAGTAACTTCAAGTCTTCTGAATATTTTCTTACGAAGTTAAGAAAACTGACACTTGAGATAAATATGAACCACTAATATGGAAGTTACTCTCCTATTTCACATATACTAACGACTTAGCAATTATGTCCAAATAGATTAATTAGAGAAAACTTAAAAGATGTAACTTATCCATAGGAATATTATCCACAATATTGCCTTTCATCTTCTTACTATTTTTTTGTTTCATTTAAGTATCAAACAAATCTTTATCATAATACTCTGGGAAAAACATTAAAAATAGTATTGTTGGGGTAACTCCTAAATAAGAGAACCCCTCCAAAAATTGGCGTATGCCACTATTTGCAACGCACACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTTTGTGCTCGCTGCGTGGCTGCGTGAGTTCTTAGGGCTAATCTGTGGTGCAATTTTATACTCAGACAAAGTATGTGTTTACTCCTTGTTTATCAATGTGGTACTCAACTCACTCTTTCTCTTTGTTTGTTTTTTTCCTTCAACGTGTTCAATCAAACATTGCAAATGGTGTTTTTCAACTGATCGATTCGAAAAAAAGATAACAGTTGTGTTTGTTTAAATTGCTTCTTCTATGGTATAATCTATGTTTTTTTAGACTCTCCAAAAATGTTGATACACTGAACTCGTCACCTTTTTTTCATCGAGTTGCGTATGGAATGTTGTATCTTTAAAGCAAAGGTTTTTATATCACTCCTTAAATCATTGGGCTAAAACAATCCGAAAATACTCTTAACATGTTGTAATATTGTTCGTTAGATTCATTAGCTGGGAAAATTTCTCCTCATTGTTTTTTAGGTCCCCCATTGGTTGGTTTGATGCATTCGAGGTTAGACCTTGGGGTACTGATCTTTTGAGGGATTCGATAGAGAAAGTGAAATCTATTCAAGAAAAGCTTTTAGCGGCGCAAAGTAGGCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGT-AATCATGCAGTAGTTCATCAAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAA...........................................................................................................................................................................................................................................................................................................................................................CA-CCTCCGGTTTCAGAGGTACAACATGCAGC-CACTATGGCTCCTC-G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGATGCCTCATTAGA-TATAGGCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGC-GGA-ATC-T-GAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580196" ref_strand="+" ref_description="SGN-U580196 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|28392929|gb|AAO41900.1| (e_value=6e-57) putative VAMP protein SEC22 [Arabidopsis thaliana]; (*ATH) AT3G52470.1 (e_value=5e-59) | Symbol: None | harpin-induced family protein / HIN1 family protein / harpin-responsive family protein, similar to harpin-induced protein hin1 ( GI:1619321) (Nicotiana tabacum) | chr3:19461627-19462590 FORWARD | Aliases: F22O6.150; ">
      <seq>ggcgattggcggccaaatcggccgaattcccatggggatccgatgatttctcctacacaaaccactctcaaacaacttttttttctctcctccctccgccatcacaactatcaccaccaccatcaccgacatgtcggataaaaagtgtagccaccacaagagcaagaagaaaaagctaattcgacgtatttttgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgtacttcaccccaaaaaacctcgtttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatatgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcagataccccaggtgtatcaaggccataaggatgtgaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcagaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttggtgatcggcccggttacggaggggttatggttggaaataacgccgttaagtatcaactagcccgggattgctccgtcagtgtttgaaataacgaccgtcaagtttgtctcgatcaattctcttttcttatttaaaataaatgttttgttcctttatagttgatgaaattgtatatttttcttttaaaaaaatatttaaaattgggaagggaaaaaaatggggaattcataatcttgttattacaggttataatttattatatatcattatattattgttttttttttataacaataatatattcaatgcgatctcagtagtatgttaatcttatttctatatttttatagaataataaaactgtttttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9578" stop="7982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9263" g_stop="8284" g_length="980"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="1049" r_length="980" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U580196" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>980</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9263" e_stop="8284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACTTTTTTTTCTCTCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTATAAAAAAATATTTAAAATTGGGAAGGGAAAAAAATGGGGAATTCATAATCTTGTTATTACAGGTTATAATTTATTATATATCATTATATTATTGTTTTTTTTTTATAACAATAATATATTTAATGCGATCTCAGTAGTATGTTAATCTTATTTCTATATTTTTATAGAATAATAAAACTGTTTTTT</genome_strand>
        <mrna_strand>AAACAACTTTTTTTTCTCTCCTCCCTCCGCCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTTTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATATGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAGATACCCCAGGTGTATCAAGGCCATAAGGATGTGAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTCGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTTTAAAAAAATATTTAAAATTGGGAAGGGAAAAAAATGGGGAATTCATAATCTTGTTATTACAGGTTATAATTTATTATATATCATTATATTATTGTTTTTTTTTTATAACAATAATATATTCAATGCGATCTCAGTAGTATGTTAATCTTATTTCTATATTTTTATAGAATAATAAAACTGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581619" ref_strand="+" ref_description="SGN-U581619 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15231227|ref|NP_190815.1| (e_value=2e-50) harpin-induced protein 1 family (HIN1) [Arabidopsis thaliana]; (*ATH) AT3G52470.1 (e_value=2e-52) | Symbol: None | harpin-induced family protein / HIN1 family protein / harpin-responsive family protein, similar to harpin-induced protein hin1 ( GI:1619321) (Nicotiana tabacum) | chr3:19461627-19462590 FORWARD | Aliases: F22O6.150; ">
      <seq>cccatttttttccttccccaattttaaatatttttttataagaaaaatatacaatttcatcaactataaaggaacaaaacatttattttaaataagaaaagagaattgatcaagacaaacttgacggtcgttatttcaaacactgacggagcaatcccgggctagttgatacttaacggcgttatttccaaccataacccctccgtaaccgggccgatcaccaagtggcacgtaagcagagcacgtgacatgcagatggtaatggcccgttgttatggaccccactttccattttacccgtccatcaatcttaaaatccaaccaaacgccaccgttttgttgatcctctgacaggcccggcccgttatacggagcgatcgggatgttattcccataaacaaacggggaccatatgttaacatccttatggccttgatacacctggggtatttgcgtgtaatacgtgatttgttgattatgatacgtagcgtatacatgcatgctatcataataaattccgattttgctattagggtttcgagcgtatattgtggtttggatagaggtcgagaagatgtttggggcggatacgttgaaggtaaagatagtccagtctccgagaatgcaaatgaggttttttggggtgatgttcggcccattctctgaggatagtgacgatagagctaagaagaggaagactaagaactccagcacaagtacgtcgaattagctttttcttctcgctcttgtcgtggctccactttttatccgacacgtcggtgatggtggtggtgatatttgtgatgctcgagggaggagagaaaaaaaatgtttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="8132" stop="9565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8432" g_stop="9267" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="838" r_length="838" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U581619" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8432" e_stop="9267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTTTTTCCCTTCCCAATTTTAAATATTTTTTTATAAGAAAAATATACAATTTCATCAACTATAAAGGAACAAAACATTTATTTTAAATAAGAAAAGAGAATTGATCAAGACAAACTTGACGGTCGTTATTTCAAACACTGACGGAGCAATCCCGGGCTAGTTGATACTTAACGGCGTTATTTCCAACCATAACCCCTCCGTAACCGGGCCGATCACCAAGTGGCACGTAAGCAGAGCACGTGACATGCAGATGGTAATGGCCCGTTGTTATGGACCCCACTTTCCATTTTACCCGTCCATCAATCTTAAAATCCAACCAAACGCCACCGTTTTGTTGATCCTCTGACAGGCCCGGCCCGTTATACGGAGCGATCGGGATGTTATTCCCATAAACAAACGGGGACCATATGTTAACATCCTTATGGCCTTGATACACCTGGGGTATTTGCGTGTAATACGTGATTTGTTGATTATGATACGTAGCGTATACATGCATGCTATCATAATAAATTCCGATTTTGCTATTAGGGTTTCGAGCGTATATTGTGGTTTGGATAGAGGTCGAGAAGATGTTTGGGGCGGATACGTTGAAGGTAAAGATAGTTGTGTCTTGGAGAATG-AAACGAGGTTTTTTGGGGTGAAGTACGGCCCATACTATGAGGATAGTGA-GA-AGAGCTAAGAAGAGGAAGA-TAAGAACTCCAGCACAAATACGTCGAATTAGCTTTTTCTTCTTGCTCTTGTGGTGGCTACACTTTTTATCCGACATGTCGGTGATGGTGGTGGTGATAGTTGTGATGGTCGAGGGAGGAGAGAAAAAAAAGTTGTTTGTGT</genome_strand>
        <mrna_strand>CCCATTTTTTTCCTTCCCCAATTTTAAATATTTTTTTATAAGAAAAATATACAATTTCATCAACTATAAAGGAACAAAACATTTATTTTAAATAAGAAAAGAGAATTGATCAAGACAAACTTGACGGTCGTTATTTCAAACACTGACGGAGCAATCCCGGGCTAGTTGATACTTAACGGCGTTATTTCCAACCATAACCCCTCCGTAACCGGGCCGATCACCAAGTGGCACGTAAGCAGAGCACGTGACATGCAGATGGTAATGGCCCGTTGTTATGGACCCCACTTTCCATTTTACCCGTCCATCAATCTTAAAATCCAACCAAACGCCACCGTTTTGTTGATCCTCTGACAGGCCCGGCCCGTTATACGGAGCGATCGGGATGTTATTCCCATAAACAAACGGGGACCATATGTTAACATCCTTATGGCCTTGATACACCTGGGGTATTTGCGTGTAATACGTGATTTGTTGATTATGATACGTAGCGTATACATGCATGCTATCATAATAAATTCCGATTTTGCTATTAGGGTTTCGAGCGTATATTGTGGTTTGGATAGAGGTCGAGAAGATGTTTGGGGCGGATACGTTGAAGGTAAAGATAGTCCAGTCTCCGAGAATGCAAATGAGGTTTTTTGGGGTGATGTTCGGCCCATTCTCTGAGGATAGTGACGATAGAGCTAAGAAGAGGAAGACTAAGAACTCCAGCACAAGTACGTCGAATTAGCTTTTTCTTCTCGCTCTTGTCGTGGCTCCACTTTTTATCCGACACGTCGGTGATGGTGGTGGTGATATTTGTGATGCTCGAGGGAGGAGAGAAAAAAAA--TGTTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581192" ref_strand="+" ref_description="SGN-U581192 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>atggcagatatgcgagaaagatagccacatctgtttacagattcaggtactccttttcgcgcttgttttccttcttgtgatcgttcgggaatgaacgatgggtaaattggtatcttttgtaatgacctgtttagttgttttgagcagcagattttatttatgcaaaaacaggttgaggcgacggaccccacgacggaccgtcatgggcacgacggaccgtcgcagggtctcgtttcaaaacacttagaaaatttgaaattgggtactgaaaatcgactctctgaactttgtaacgaaatggcaggacggaccgtcacaggtgtgacggaccgtcacacactctttggtggaaattgagtctctgaaccttctgacgacctgcaggacggaccgtcgcaggtgcgacgggccgtcacaggttgcgtaatcccagtctgggtcggatttctttatacgttttaagggacgtttttgactattccttctttaattataaagttagtgggttaatggtaatacgtctgattacttgggggttaaaagaggtaaccttaaattaattagtgggttattattgccatcttttattcttaattatatactaattagggtaaaagaaagagggtttgcataaataaaatagaaagaacaagagaaagagagagaaagttgaacgagaaagaggagaaacgaagagaaacaaagcttgggaaattgcttgcttgatcactaatcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="19607" stop="17548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19309" g_stop="18097" g_length="1213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1205" r_length="1205" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18096" i_stop="18028" i_length="69">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18027" g_stop="17848" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1206" r_stop="1383" r_length="178" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U581192" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>1393</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19309" e_stop="18097"/>
          <exon e_start="18027" e_stop="17848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTGATATGCGAGAAAGATATCCACACCTGTTCACAGATTCAGGTACTCCTTTTC-CCCTTATTTTCCTTCTTGTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTAATGTAACAACCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGCTGGGACGACGGAACCCACAACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGATGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACAGACCGTCGCAGGCACGACGGGCTGTCACAAACTGCGTAATCCCAGTCTGGATCGGATTTCCTTATACGTTTTAAAGGGCGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAATCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTTCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATGAACGAGAGGAAAAAACACAAAGCTTGGGAAATTGCTTGCTTGATCACTAATCTTCAGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAACGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTTATAATGAGGCCTTGGTATAAAAGAAGGTGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAAAGGGAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGATACGTAGAATTAGGGAATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGAATCGG-GTGTCACGAACCGACACGTAGATTTAGGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGAGAGCGGAGTGTCACGTACC</genome_strand>
        <mrna_strand>ATGGCAGATATGCGAGAAAGATAGCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCGCTTGTTTTCCTTCTTGTGATCGTTCGGGAATGAACGATGGGTAAATTGGTATCTTTTGTAATGACCTGTTTAGTTGTTTTGAGCAGCAGATTTTATTTATGCAAAAACAGGTTGAGGCGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATTTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTAACGAAATGGCAGGACGGACCGTCACAGGTGTGACGGACCGTCACACACTCTTTGGTGGAAATTGAGTCTCTGAACCTTCTGACGACCTGCAGGACGGACCGTCGCAGGTGCGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTATACGTTTTAAGGGACGTTTTTGACTATTCCTTCTTTAATTATAAAGTTAGTGGGTTAATGGTAATACGTCTGATTACTTGGGGGTTAAAAGAGGTAACCTTAAATTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGCATAAATAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTTGAACGAGAAAGAGGAGAAACGA-A-G--AGAA-ACAAAGCTTGGGAAATTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAG-ATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGA.....................................................................T-TTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTA-GGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATAT-GANGGAGCGGAATGTCACGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="19551" stop="20328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19851" g_stop="20027" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19851" e_stop="20027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGTTATCCCAATGTCCTCCAAATTCTATCACACATGCACGAAGCATATCCTCCAATACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="19766" stop="20858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20066" g_stop="20558" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20066" e_stop="20558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACATAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCGGCATTGTAAGTCACCTTAACCGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTCCTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCGCGATACATCTTGGTTGCACCAGGGTGTATAGAATACCTTGAACTATGAGCCTCTGCCAGGATAGTGTTGATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="21027" stop="22443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21331" g_stop="22143" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21331" e_stop="22143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAAGCGGCGATAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAAAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGTAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTAGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACACTCGGAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="24310" stop="21160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24011" g_stop="23145" g_length="867"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="867" r_length="867" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23144" i_stop="22030" i_length="1115">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22029" g_stop="21460" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="1436" r_length="569" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24011" e_stop="23145"/>
          <exon e_start="22029" e_stop="21460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGATCACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAAGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACAACGAAATCTTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGAAGGAGTAAAGCCAGATGACTTCACCATGGCAACTACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTTTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGGCCTATGCTTGATTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACATGGTGGTCGAGGTAATGGTGGTCACCAAAATGACCGGGGTGATGGGAAAATTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTCAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAAACCAGTGCGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTTCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTCCGAGTGTGCATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTAAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACTAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTACATTCATGAGTTTGATGAACGGGATTTTTAAGCCATATTTGGATCTTTTTGTGATCGTATTCATTGATGACATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTAAGGGAGAAAAAGCTTTATGCCAAATTCTCCAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCATGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="24341" stop="21551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24041" g_stop="21850" g_length="2192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>2192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24041" e_stop="21850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAGCGTCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGATCACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAAGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACAACGAAATCTTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGAAGGAGTAAAGCCAGATGACTTCACCATGGCAACTACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTTTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGGCCTATGCTTGATTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACATGGTGGTCGAGGTAATGGTGGTCACCAAAATGACCGGGGTGATGGGAAAATTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTCAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAAACCAGTGCGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTTCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTCCGAGTGTGCATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="23676" stop="21603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23376" g_stop="23176" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23175" i_stop="22432" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.174" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22431" g_stop="21903" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="723" r_length="522" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23376" e_stop="23176"/>
          <exon e_start="22431" e_stop="21903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACAACGAAATCTTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGAAGGAGTAAAGCCAGATGACTTCACCATGGCAACTACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTTTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGGCCTATGCTTGATTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACATGGTGGTCGAGGTAATGGTGGTCACCAAAATGACCGGGGTGATGGGAAAATTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTCAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAAACCAGTGCGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTTCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTCCGAGTGTGCATAGACTACAG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592954" ref_strand="+" ref_description="SGN-U592954 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|195426549|ref|XP_002061389.1| (e_value=0) GK20893; (*SWP) sp|Q39WP5|NHAA_GEOMG (e_value=0) Na(+)/H(+) antiporter nhaA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=nhaA; ">
      <seq>ggaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="21847" stop="22940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22147" g_stop="22640" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U592954" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22147" e_stop="22640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACACATCCAGAAACTCACGAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGCACTGGTTTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTGAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATG</genome_strand>
        <mrna_strand>GGAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="22023" stop="22947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22322" g_stop="22647" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22322" e_stop="22647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTGAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="22234" stop="24340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22534" g_stop="24041" g_length="1508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>1508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22534" e_stop="24041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCCATCACCCCGGTCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAATCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTAGTTGCCATGGTGAAGTCATCTGGCTTTACTCCTTCTACCTCTATCACGAAGTCTACCACTTCTTGAAAAGATTTCGTTGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCCTATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACTGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTTATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCGGAGTCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGCCTAACCTTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATTTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGCTCATATTCCCCATCCTCCCCTTCTCTTATTACTTCCTTAGTCGGTGGAGGAGTCACCGTCCTAGCATCAGATGGGCTAGGTGATCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGACGCTGCTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="24341" stop="22316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24041" g_stop="22616" g_length="1426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>1426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24041" e_stop="22616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAGCGTCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGATCACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAAGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACAACGAAATCTTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGAAGGAGTAAAGCCAGATGACTTCACCATGGCAACTACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTTTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGGCCTATGCTTGATTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACATGGTGGTCGAGGTAATGGTGGTCACCAAAATGACCGGGGTGATGGGAAAATTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="24323" stop="22971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24023" g_stop="23271" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24023" e_stop="23271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGATCACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAAGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="24276" stop="23122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23977" g_stop="23422" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23977" e_stop="23422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAAGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592141" ref_strand="+" ref_description="SGN-U592141 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctggcactgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="24496" stop="25424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24796" g_stop="25125" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U592141" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24796" e_stop="25125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCTCTCAATATTCATTAATCCTCTTGTGTCGATATATGACACTCCGATCCCCCTAAATCTACGTGTCGGTTC</genome_strand>
        <mrna_strand>CTGGCACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGAT-CCCCTAAATCTACATGACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593492" ref_strand="+" ref_description="SGN-U593492 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gggaaaaactggcagaaatgacggaccccacgacggaccatcatgggcacgacggaccgtcgcagggtctcatttcaaaacacttaggaaatctgaaattgggtactgaaaatcgactctctgaacttcgtaacggaatggcaagacggaccgtcacaggcgtgatggaccatcacagagtcttcagtgaaaatccagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacaacgggctgtcacaggctgcgtaaatcccagtctgagtcggaattcctcaattgttttaagggacgtttttgactattcctgctttaattataaagttagtgggttaatgttaataagtctaattacttgggggttaaaagaggtaaccttaagttaattagtgggttattattgccatattttattcttaattatatactaattagggtaaaagaaagagggtttgaataaagaaaatagaaagaacaagagaaagagagagaaagtcgaacgagaaagaggatcgaacgagaggaaaaaacacaaagcttgggaaatcacttgcttgatcacgaatcttcggtggaggtaggttatggtttctcttacgatattcgtagtaagctcttaatagcgaataatatgtattgataatattgtaaacccttctatgtgctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="26534" stop="25253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26235" g_stop="25553" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U593492" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26235" e_stop="25553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAAACAGGCTGGGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGTGATGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCTGTCACAGACTGCGT-AATCCTAGTCTGGATCGGATTTCCTTATGCGTTTTAAGGGGCGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAACACAAAGCTTGGGAAATTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAA</genome_strand>
        <mrna_strand>GGGAAAAACTGGCAGAAATGACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCAGGGTCTCATTTCAAAACACTTAGGAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAGGCGTGATGGACCATCACAGAGTCTTCAGTGAAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCTGTCACAGGCTGCGTAAATCCCAGTCTGAGTCGGAATTCCTCAATTGTTTTAAGGGACGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAGCTCTTAATAGCGAATAATATGTATTGATAATATTGTAAACCCTTCTATGTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579456" ref_strand="+" ref_description="SGN-U579456 Tomato 200607#2 [33 ESTs aligned] ">
      <seq>ctcggcaccagatcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagattttctcaaccatgaattaatgaaaaaattatgccataaaatataaaaaatttactcatttttcattgagctaattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25728" g_stop="26277" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="566" r_length="545" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26278" i_stop="26569" i_length="292">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26570" g_stop="26594" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="591" r_length="25" r_score="0.640"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26595" i_stop="27086" i_length="492">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27087" g_stop="27208" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="711" r_length="120" r_score="0.588"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U579456" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25728" e_stop="26277"/>
          <exon e_start="26570" e_stop="26594"/>
          <exon e_start="27087" e_stop="27208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CTTCTCTCTCTTTCTGTTCT--TTTCT-TTTTC-TTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTAC....................................................................................................................................................................................................................................................................................................ATTTATGTTCTTCCTACTTAAATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAT-TATTTTACGATTTATAACACT-ATTAGAAACAAAGATTTTCTCAACCATGAATTAATGAAAAAATTATGCCATAAAATATAAAAAATTTACTCATTTTTCATTGAGCTAATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584230" ref_strand="+" ref_description="SGN-U584230 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157353855|emb|CAO46387.1| (e_value=1e-152) unnamed; (*ATH) AT3G51270.1 (e_value=2e-149) | Symbol: None | RIO1 family protein, contains Pfam profile PF01163: RIO1 family | chr3:19044830-19047751 FORWARD | Aliases: F24M12.310; (*SWP) sp|Q9CQS5|RIOK2_MOUSE (e_value=4e-91) Serine/threonine-protein kinase RIO2 OS=Mus musculus GN=Riok2; ">
      <seq>atgtttgtttgaactcttttttttttcactagctcaaaagccttcaatttttcgagtaattttcttcagcaactcagtttttctcttcttgaagtttcaataatcttccattaacaagtgttagcaatcattaacagcagcaaaagaggataagatgaagttggatgttaacgttttgagatacctttcgaaagatgatttcagggtccttactgccgttgagatgggaatgcgcaatcatgagattgtgccttgtgagctcattgaccggattgctcgcctcaagcatggaggcacatataaagtgttgaagaatttgctaaagcacaaattagtgcatcatgactcttctaaatatgatggatttcgactcacctaccttggttatgatttccttgcgataaagactttggttaatcgtgggatgtttaatggagtgggtcgtcaaattggtgttggaaaagagtctgatatttttgaggttgtaaaggaagatggcacagttcttgcaatgaagttgcacagacttggtagggtttcttttagggcagtcaaatcgaaacgtgactatttgaggcatcgtagtagctacaattggctgtacttgtcccgacttgctgctttgaaagagtttgcttttatgaaggcactagaagaacatggatttcctgttcctcaggctgtggattgcaaccgacattgtgtgattatgtcacttgtcccaggctatccacttgtgcaggttaaggagctgcaaaacccagatgtggtttttgaaacaatcatcgctgctgttattcgtttggcagaacacgggcttattcactgtgattttaatgaatttaacataatgattgatgatgatgaaaaggtcaccataattgatttcccacaaatggtgtcagtctctcatcctaacgctcagatgtactttgatcgtgatgtggagtgcatctataagttctttgcaaagcggcacaatatgtcctttgatgaaaatgaaaatgattctgatggtttggagggtgacatacatgaagttggtcgcccccaattttctgaaataaacaagaacagcgggttcttggacaaaaaacttgctgccagtggttttacgatacacgatcaagatgagcttgaagagatgattgagggataacttgaaaatcattcataatctgacgatgaaggaactgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="33273" stop="37937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33573" g_stop="33689" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33690" i_stop="34062" i_length="373">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34063" g_stop="34183" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="238" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34184" i_stop="34265" i_length="82">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34266" g_stop="34312" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="285" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34313" i_stop="34415" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34416" g_stop="34486" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="356" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34487" i_stop="34578" i_length="92">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34579" g_stop="34692" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="470" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34693" i_stop="34775" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34776" g_stop="34951" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="646" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34952" i_stop="35028" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="35029" g_stop="35117" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="735" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="35118" i_stop="35833" i_length="716">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="35834" g_stop="35951" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="853" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="35952" i_stop="36174" i_length="223">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="36175" g_stop="36248" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="927" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="36249" i_stop="36397" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36398" g_stop="36445" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="928" r_stop="975" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="36446" i_stop="36666" i_length="221">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="36667" g_stop="36835" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="976" r_stop="1144" r_length="169" r_score="0.947"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="36836" i_stop="37580" i_length="745">
            <donor d_prob="0.959" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="37581" g_stop="37637" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1145" r_stop="1201" r_length="57" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U584230" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33573" e_stop="33689"/>
          <exon e_start="34063" e_stop="34183"/>
          <exon e_start="34266" e_stop="34312"/>
          <exon e_start="34416" e_stop="34486"/>
          <exon e_start="34579" e_stop="34692"/>
          <exon e_start="34776" e_stop="34951"/>
          <exon e_start="35029" e_stop="35117"/>
          <exon e_start="35834" e_stop="35951"/>
          <exon e_start="36175" e_stop="36248"/>
          <exon e_start="36398" e_stop="36445"/>
          <exon e_start="36667" e_stop="36835"/>
          <exon e_start="37581" e_stop="37637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTGTTTGAACTCTTTTTTTTTTCACTAGCTCAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAAGTAAGTATTGTATTAATTCTATCAATTAAACTTTTTTTTTTTTTAGAAATTTAGTTTAGTATTTTGTTGTGTTTGGAGCCATAGTTGTTGTGTATAGAACAGGAATAAAAATCAAAGATTCAATGATTTTTGTGTAGTAAATGATATGGGGTTTCGACCCTTTACATGTTTCTTGTTTATCTTTTGTAAAGTTATGATCTTTTTTAGGTTCAGATGTTATGGTGTTCAAGCTACTGTAATTGGTTCCTTTTATCTTATCTCTGTCTGTCCTAAAATTAACTTTGTATAGTAGCTCTTGGAGCTGATTATAATCCTCAAACTTCTCAATATTTTGTCTAAATTGCATAATCTTTGGTGGGTTTTTTGTATAAAGGTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAATGTCTGTAAAATCGTATACACCCTTTTCGACTTTGATTTGTTTTCTTTTCAGTTTATGATGGTTTGTGTTTTGGCTTTTTCAGCATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAAGTTAGTCCATTTTTCTGAATTGGAAATACATTAGCTGTTGTGTTGTTTTGTTATTTTTTTTTTCTGTTTTTTTGTTTTTATAGTTATGTTTAATTGTTTTTAGGCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAATGTGAGTGTTTTGATTGTTTTTGTTTTGTTAAAAGCTACAGTATTGGGGCTACCTTTTTGTTCTGAATTTTATTTCTTAACATTGCTGTGTAGATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTGGTAAATTTTCATCAATATTCTTGTGTTTAACTGTTGTTTTTGTTACTTTATAATTTATACTTAAATGTATCCATTTTTTATAGATATTTTTGAGGTTGTAAAGGAAGATGGCACAGTTCTTGCAATGAAGTTGCACAGACTTGGTAGGGTTTCTTTTAGGGCAGTCAAATCGAAACGTGACTATTTGAGGCATCGTAGTAGCTACAATTGGCTGTACTTGTCCCGACTTGCTGCTTTGAAAGAGTTTGCTTTTATGAAGGTAAGTGCAGCTCTCTAATTTGCCGTATCGTCTTTGAATTAGGAGATTTGTTTGATATTAAACACTTGTGTAAACAGGCACTAGAAGAACATGGATTTCCTGTTCCTCAGGCTGTGGATTGCAACCGACATTGTGTGATTATGTCACTTGTCCCAGGCTATCCACTGTAAGTATTTCACAAATATAGTAACGATGGAGATTATCTGTTATACTAGAGTTTCCTAATATCTCTGAACTTCTGTAAACTTGGTGTTATTACTTAATTACGTACCAGTACATATGCAACATTTTTAGTCTATACCTAGCTTTATAATATTAGCCATAAGGATGCGAGAAGAGTTGTTTATTTCTAATCACCATCATAACCTGGAAAATATAGTTTTTATGGTATTTGAGGTTTAGTATAACCATAATTTTTCAGTAATTGAGTTTTTGTATAGTAGTAATTGGATTCTCCATAGCTTGCTTCATAGCAGTTCTCCTATCATGTTCTGTGTTTTTCCTTTCTTAAGTATGTTAGCTTCATCTACCTTTGTATGATCAAATTATGTGGCTAAACTGACCTTTGACCTTAACTAAATTGGTAATGTTAATTTTTCTTCCCAAATACTATTTAGGGATTCTCGCTCCCGCATAAACCCTATAATCTTGTCTAATCTATTTTGTGCTTATAGCAACAACTCATTGTAATAAATGGAATGCTTGGATACTCTATTAATAGCATTATGAGAATTATGTTAATCTGTAAAAGAAATTGTTATCTATGAACTTAACCTTAGAAAAAGCATATTCTTGATCTTCGGCTAACAGTGCATTATTATTGTATTTTTAGTTTCTTCCTAGAAATAGTGGCTGTAGAACTTATAGAAATGGTTATAATAGTGTGCAGGTTAGGGAGCTGCAAAACCCAGATGTGGTTTTTGAAACAATCATCGCTGCTGTTATTCGTTTGGCAGAACACGGGCTTATTCACTGTGATTTTAATGAATTTAACATAATGGTATCTTCTATTCCTTCTTTGATTTATTTAAGGTTATCATTATATTTAACTGCTATATTTTTTTGTTCCTTACGAGCTTGGTTCGCCAGTGTGCAAGTGGAATATGTTCTTCCATTTTTCATTTCTTTGCCCGTTTCAATTGCTCTGAATTTCTTTGTATAGGCTTATATTAGACCTGTTCGTCAGTTTGCTGATAATTCTTATGTACCTTATTGGATTACAGATTGATGATGATGAAAAGGTCACCATAATTGATTTCCCACAAATGGTGTCAGTCTCTCATCCTAACGCTCAGATGTAAGATATTTTCCCATCTTATTCCATCTAAACAGTCTTTCAGTATTCTGTTTTTCTTGTTAGTTCCCTCCCTTCATCTGGACCACTGTGTGCTATAGATTGTGCTCTTAGAAAAATTGCTGTCCCTGATACAAGTTTCTACATGTTAGGTACTTTGATCGTGATGTGGAGTGCATCTATAAGTTCTTTGCAAAGCGGTTAGTGAATTTACTCCTTTCTGTTTATTTGGAGAAGTCCATCTGTTTGACCAAGACGCTACCTGTGAAGACTTCTTCCACTTTATGATGTATTTTTGGGACTCATCTTTTGGAGTCACTTTTTTATCCTGATAACTATTTTGCTGCTACATATGAATTTGAGACGCTGAATTTTCCTTTGAAGCGTGAGCTCATAGTTTATCTCTCTTACCTATCTTTAGGTACAATATGTCCTTTGATGAAAATGAAAATGATTCTGATGGTTTGGAGGTTGACATAAATGAAGTTGGTCGCCCCCAATTTTCTGAAATAAACAAGAACAGCGGTTTCTTGGACAAAGAACTTGCTGCCAGTGGTTTTACGAGAAAGGATCAAGATGAGCTTGAAAAGGTACAATCAAATGGCTCAATTGCAACTAAAATTTGTGAACCTTACTAGAAGAAGAAACTTTCTGGATATAGCCTTATTCCAGTAAGAAGGGAAACAAATAAAATAAACTATGTTTAGATTGAATGACTTCTTTTGGAACCCCAATGAAGCTGACTCTCGTATTATTCTGGAAACTTAACTTTGAATATTGCGACTGTGTGACAAATGTGATGGTATTTGTTGCTGAGTAACTTAGATATTCATATTCTATTGCCTTCTCATGAACGAAATAGACTGGCAACAAAAGAGAAGGGGAAAAAAGTTTGTCTTTTAAGCTTGCAGCTTGACTTTTTGGGAATAAGTTTTTTCTTTTCCTTTTATGGTATGTTGTTCCTATGTCATGGTTATTACACAGTCATGGGGATTTCTGATTCTACCTTTCCGTGCAACCCCGCAACTTTACTTATTTTAACCAAAATCTTTGGGGCTAGGACACTTATATTTGAAGGAGGTAAGCTAACTTAAAGGCATGAAGTTGCCGATTTTTGATTCTTCCTTTCAGAAAACCTGGGGGACTGGTTTTGTGGGATGTGCTGCAGTGCTGTGAGGACACTTTTTATGGCCCTGGCACATGATTACCTCGACATTGTCTTTCTTCTTGTGTCAAACATAGAAAAACTTATCGCAGCTTTGTGATATCCTGCCATTTTGAATTTGAATCGCCTGTTGTACTCGACTTTGTAGTTATTCTTTACTTTGTTTGCAGTTGATTGAGGGAGAACTTGAAAATCATTCAGATTCTGACGATGAAGGAACTGCTGAT</genome_strand>
        <mrna_strand>ATGTTTGTTTGAACTCTTTTTTTTTTCACTAGCTCAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAA.....................................................................................................................................................................................................................................................................................................................................................................................GTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAAT..................................................................................CATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAA.......................................................................................................GCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAAT............................................................................................ATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTG...................................................................................ATATTTTTGAGGTTGTAAAGGAAGATGGCACAGTTCTTGCAATGAAGTTGCACAGACTTGGTAGGGTTTCTTTTAGGGCAGTCAAATCGAAACGTGACTATTTGAGGCATCGTAGTAGCTACAATTGGCTGTACTTGTCCCGACTTGCTGCTTTGAAAGAGTTTGCTTTTATGAAG.............................................................................GCACTAGAAGAACATGGATTTCCTGTTCCTCAGGCTGTGGATTGCAACCGACATTGTGTGATTATGTCACTTGTCCCAGGCTATCCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAGGTTAAGGAGCTGCAAAACCCAGATGTGGTTTTTGAAACAATCATCGCTGCTGTTATTCGTTTGGCAGAACACGGGCTTATTCACTGTGATTTTAATGAATTTAACATAATG...............................................................................................................................................................................................................................ATTGATGATGATGAAAAGGTCACCATAATTGATTTCCCACAAATGGTGTCAGTCTCTCATCCTAACGCTCAGAT.....................................................................................................................................................GTACTTTGATCGTGATGTGGAGTGCATCTATAAGTTCTTTGCAAAGCG.............................................................................................................................................................................................................................GCACAATATGTCCTTTGATGAAAATGAAAATGATTCTGATGGTTTGGAGGGTGACATACATGAAGTTGGTCGCCCCCAATTTTCTGAAATAAACAAGAACAGCGGGTTCTTGGACAAAAAACTTGCTGCCAGTGGTTTTACGATACACGATCAAGATGAGCTTGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGAGGGATAACTTGAAAATCATTCATAATCTGACGATGAAGGAACTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584231" ref_strand="-" ref_description="SGN-U584231 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|118487340|gb|ABK95498.1| (e_value=2e-18) unknown; (*ATH) AT3G51270.1 (e_value=6e-13) | Symbol: None | RIO1 family protein, contains Pfam profile PF01163: RIO1 family | chr3:19044830-19047751 FORWARD | Aliases: F24M12.310; ">
      <seq>cggtcaaagaacttgctgccagtggttttacgagaaaggatcaagatgagcttgaaaagttgattgagggagaacttgaaaatcattcagattctgacgatgaaggaactgctgatgaagaagatgaagaagacattaacaacacaaacgtcaagcagctcgaatccttggacttggcgaaggaagacgttaatcatcaaactggggatgataagctcgacgataaccatcaagttggggatgaaaatgatcccgaggaagaggaagaggccgagtctgaagatgatcctgaactagagaaaagcctgagcaagcaaaggaagaaggctatccaggctgcccatcggggcaagaggaactttgcctcgaggaatacatacaaagacaaaggtgggaaatcctcacagaactcaaaggtccataagcaattgagtggttggtgaagtatacactattaaagaatatgcaatccagtgtctttgaaggccaatccacggaatttcttttgcgcgaaggtgttgaagagaatatcatcatataaactagctatcgataagttactgagtgattcagtttcgactcagatatatacattgtcctaaatgtctgtctggtgtatatttaaaattttggtagcatgtttggcagaacatataggctcaagattgttaaatgtgtatttgttgtttactaatgattataaatcaagaacagctatgtagttgtgaagaactacttcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="36478" stop="38922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36777" g_stop="36835" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36836" i_stop="37580" i_length="745">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37581" g_stop="37703" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="182" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37704" i_stop="38061" i_length="358">
            <donor d_prob="0.506" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38062" g_stop="38622" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="743" r_length="561" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U584231" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584231" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36777" e_stop="36835"/>
          <exon e_start="37581" e_stop="37703"/>
          <exon e_start="38062" e_stop="38622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACAAAGAACTTGCTGCCAGTGGTTTTACGAGAAAGGATCAAGATGAGCTTGAAAAGGTACAATCAAATGGCTCAATTGCAACTAAAATTTGTGAACCTTACTAGAAGAAGAAACTTTCTGGATATAGCCTTATTCCAGTAAGAAGGGAAACAAATAAAATAAACTATGTTTAGATTGAATGACTTCTTTTGGAACCCCAATGAAGCTGACTCTCGTATTATTCTGGAAACTTAACTTTGAATATTGCGACTGTGTGACAAATGTGATGGTATTTGTTGCTGAGTAACTTAGATATTCATATTCTATTGCCTTCTCATGAACGAAATAGACTGGCAACAAAAGAGAAGGGGAAAAAAGTTTGTCTTTTAAGCTTGCAGCTTGACTTTTTGGGAATAAGTTTTTTCTTTTCCTTTTATGGTATGTTGTTCCTATGTCATGGTTATTACACAGTCATGGGGATTTCTGATTCTACCTTTCCGTGCAACCCCGCAACTTTACTTATTTTAACCAAAATCTTTGGGGCTAGGACACTTATATTTGAAGGAGGTAAGCTAACTTAAAGGCATGAAGTTGCCGATTTTTGATTCTTCCTTTCAGAAAACCTGGGGGACTGGTTTTGTGGGATGTGCTGCAGTGCTGTGAGGACACTTTTTATGGCCCTGGCACATGATTACCTCGACATTGTCTTTCTTCTTGTGTCAAACATAGAAAAACTTATCGCAGCTTTGTGATATCCTGCCATTTTGAATTTGAATCGCCTGTTGTACTCGACTTTGTAGTTATTCTTTACTTTGTTTGCAGTTGATTGAGGGAGAACTTGAAAATCATTCAGATTCTGACGATGAAGGAACTGCTGATGAAGAAGATGAAGAAGACATTAACAACACAAACGTCAAGCAGCTCGAATCCTTGGACTTGGCGAAGGTAATTCATCTTTCTCCACTAAGAAACAATGAGAGAAGAGGCAAAGACGTAGTGATCTCACTACAGATTAAAGTCATAACATGAAATGTTTCTGGTTCGTTTGGTTGATACGAGAATTTGGGACCCAATTCTCTTACACTATTCTTTATTATTTGAACATAGTAATGTGCTACTTTAATATGAATTTCACCCGAAATATGGAAACATAAGATGAGCCTCAAACAGTTCTCGTATAAATCTAAATAAAAAACGAGATGACAACTGATGAACCATTTTTCTACATACTACGCCTTTGCTGTAAAGCAAAAGAGAACATTTCCTGTGTCTCTTGGCATTTACTAGAGATATTCTCTTGCAGGAAGACGTTAATCATCAAACTGGGGATGATAAGCACGACGATAACCATCAAGTTGGGGATGAAAATGATCCCGAGGAAGAGGAAGAGGCCGAGTCTGAAGATGATCCTGAACTAGAGAAAAGCCTGAGCAAGCAAAGGAAGAAGGCTATCCAGGCTGCCCATCGGGGCAAGAGGAACTTTGCCTCGAGGAATACATACAAAGACAAAGGTGGGAAATCCTCACAGAACTCAAAGGTCCATAAGCAATTGAGTGGTTGGTGAAGTATACACTATTAAAGAATATGCAATCCAGTGTCTTTGAAGGCCAATCCACGGAATTTCTTTTGCGCGAAGGTGTTGAAGAGAATATCATCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGATATATACATTGTCCTAAATGTCTGTCTGGTGTATATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGTATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAACTACTTCAGAT</genome_strand>
        <mrna_strand>CGGTCAAAGAACTTGCTGCCAGTGGTTTTACGAGAAAGGATCAAGATGAGCTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGAGGGAGAACTTGAAAATCATTCAGATTCTGACGATGAAGGAACTGCTGATGAAGAAGATGAAGAAGACATTAACAACACAAACGTCAAGCAGCTCGAATCCTTGGACTTGGCGAAG......................................................................................................................................................................................................................................................................................................................................................................GAAGACGTTAATCATCAAACTGGGGATGATAAGCTCGACGATAACCATCAAGTTGGGGATGAAAATGATCCCGAGGAAGAGGAAGAGGCCGAGTCTGAAGATGATCCTGAACTAGAGAAAAGCCTGAGCAAGCAAAGGAAGAAGGCTATCCAGGCTGCCCATCGGGGCAAGAGGAACTTTGCCTCGAGGAATACATACAAAGACAAAGGTGGGAAATCCTCACAGAACTCAAAGGTCCATAAGCAATTGAGTGGTTGGTGAAGTATACACTATTAAAGAATATGCAATCCAGTGTCTTTGAAGGCCAATCCACGGAATTTCTTTTGCGCGAAGGTGTTGAAGAGAATATCATCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGATATATACATTGTCCTAAATGTCTGTCTGGTGTATATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGTATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAACTACTTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581528" ref_strand="+" ref_description="SGN-U581528 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|157356222|emb|CAO50149.1| (e_value=2e-112) unnamed; (*ATH) AT5G06370.1 (e_value=3e-111) | Symbol: None | NC domain-containing protein, contains Pfam domain, PF04970: NC domain | chr5:1947140-1948574 REVERSE | Aliases: MHF15.11, MHF15_11; ">
      <seq>gcatttacttaataggcaaaaacttttgttcttgatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtggtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcggtggaccacttgcagctgttatgtcaacaccactacgtctagtcaccaccaacgtttatgggatggtagcaacagctgttggggtctattgtgccagtcgctatgcagctgatattggtatgcggagggatgtgatgaaagtatctgcagaagatctaacaacaaggctaacaactggcttgctccgggttgttgaacctagtctcgcagttttgccacctacgactagctagtatcatttcttgatatgtaataacgcgctatagagtcggaaagtgagctttctttttaatatacatgggagcttctagctatatgtcttgaggcttctgtatctgttgtactttattatgtgttgttttgcctccaaaagaagtcgtaatgtgattgcagatttgtgatgtttaatctcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42381" stop="38517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42082" g_stop="41979" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="178" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="38817" g_length="866"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="1044" r_length="866" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U581528" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1044</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42082" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="38817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTACTTAATAGGCAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTAATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTTCTGTATCTGTTGTACTTTATTATGTGTTGTTTTGCCTCCAAAAGAAGTCGTAATGTGATTGCAGATTTGTGATGTTTAATCTCAGAT</genome_strand>
        <mrna_strand>GCATTTACTTAATAGGCAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTAATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTTCTGTATCTGTTGTACTTTATTATGTGTTGTTTTGCCTCCAAAAGAAGTCGTAATGTGATTGCAGATTTGTGATGTTTAATCTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590019" ref_strand="+" ref_description="SGN-U590019 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133907897|gb|ABO42408.1| (e_value=1e-12) ribosomal; (*ATH) AT5G06370.1 (e_value=2e-11) | Symbol: None | NC domain-containing protein, contains Pfam domain, PF04970: NC domain | chr5:1947140-1948574 REVERSE | Aliases: MHF15.11, MHF15_11; (*SWP) sp|Q04716|RT03_PETHY (e_value=9e-14) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3; ">
      <seq>acaaggaacagtagatcgatttggaattgaacttaccaaaatatgatccagaatggttccagttcctacttcttgaccacgtcttgtgaagtgaatgactttattatccccaacatagatacctgttatttaggcatatccaatattattacaaaataatctttgttttctctagtttattaatcaaggtaatcaggaaacaagggatggggttggggtgtataataaccttttttttgaggatgcccgggaacaactcctaggtcaattaaggagaaaatgttggaacctcatgggtaaggatagatggtcgaagtgattcagaagcataaacaagatcaaacttaaataacatgccaaagcgcaaacgtttcgataacattatctatgcacttcaaatcttctttagactaatgtgaatactggcaacaagccaattcccttgaacttacagaaagaccgataacccttcactgtagcaagcaaattactacaggattttacgaataacatcagtggatcatcttccgttctataattaactgctttattaagtgaatgagctacaccccatattggcaaagccctctaaggtctatcactaagcacatagtcaagaaaaaggtaacccctgagaattacttgatcaaagaaatggatcactcacataacgcatttcgttcctaattgcttatgataaccgcgcattccacaagaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="39261" stop="40580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39561" g_stop="40280" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U590019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39561" e_stop="40280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGAACAGTAGATCGATTTGGAATTGAACTTACCAAAATATGATCCAGAATGGTTCCAGTTCCTACTTCTTGACCACGTCTTGTGAAGTGAATGACTTTATTATCCCCAACATAGATACCTGTTATTTAGGCATATCCAATATTATTACAAAATAATCTTTGTTTTCTCTAGTTTATTAATCAAGGTAATCAGGAAACAAGGGATGGGGTTGGGGTGTATAATAACCTTTTTTTTGAGGATGCCCGGGAACAACTCCTAGGTCAATTAAGGAGAAAATGTTGGAACCTCATGGGTAAGGATAGATGGTCGAAGTGATTCAGAAGCATAAACAAGATCAAACTTAAATAACATGCCAAAGCGCAAACGTTTCGATAACATTATCTATGCACTTCAAATCTTCTTTAGACTAATGTGAATACTGGCAACAAGCCAATTCCCTTGAACTTACAGAAAGACCGATAACCCTTCACTGTAGCAAGCAAATTACTACAGGATTTTACGAATAACATCAGTGGATCATCTTCCGTTCTATAATTAACTGCTTTATTAAGTGAATGAGCTACACCCCATATTGGCAAAGCCCTCTAAGGTCTATCACTAAGCACATAGTCAAGAAAAAGGTAACCCCTGAGAATTACTTGATCAAAGAAATGGATCACTCACATAACGCATTTCGTTCCTAATTGCTTATGATAACCGCGCATTCCACAAGAGGT</genome_strand>
        <mrna_strand>ACAAGGAACAGTAGATCGATTTGGAATTGAACTTACCAAAATATGATCCAGAATGGTTCCAGTTCCTACTTCTTGACCACGTCTTGTGAAGTGAATGACTTTATTATCCCCAACATAGATACCTGTTATTTAGGCATATCCAATATTATTACAAAATAATCTTTGTTTTCTCTAGTTTATTAATCAAGGTAATCAGGAAACAAGGGATGGGGTTGGGGTGTATAATAACCTTTTTTTTGAGGATGCCCGGGAACAACTCCTAGGTCAATTAAGGAGAAAATGTTGGAACCTCATGGGTAAGGATAGATGGTCGAAGTGATTCAGAAGCATAAACAAGATCAAACTTAAATAACATGCCAAAGCGCAAACGTTTCGATAACATTATCTATGCACTTCAAATCTTCTTTAGACTAATGTGAATACTGGCAACAAGCCAATTCCCTTGAACTTACAGAAAGACCGATAACCCTTCACTGTAGCAAGCAAATTACTACAGGATTTTACGAATAACATCAGTGGATCATCTTCCGTTCTATAATTAACTGCTTTATTAAGTGAATGAGCTACACCCCATATTGGCAAAGCCCTCTAAGGTCTATCACTAAGCACATAGTCAAGAAAAAGGTAACCCCTGAGAATTACTTGATCAAAGAAATGGATCACTCACATAACGCATTTCGTTCCTAATTGCTTATGATAACCGCGCATTCCACAAGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576019" ref_strand="+" ref_description="SGN-U576019 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|75120872|sp|Q6DW74|DGDG1_LOTJA (e_value=3e-40) Digalactosyldiacylglycerol; (*ATH) AT3G11670.2 (e_value=3e-28)  Symbol: None | digalactosyldiacylglycerol synthase 1 (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid galactosyltransferase, identical to digalactosyldiacylglycerol synthase (DGD1) GI:5354158 (Arabidopsis thaliana) | chr3:3681612-3684552 REVE... ; (*SWP) sp|Q6DW74|DGDG1_LOTJA (e_value=2e-41) Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1; ">
      <seq>aaaaaacagagcaattgctaaaaccctagaaaaaaaatgatgaatttcagagccgccggagactaaaacgacgcccccatcgtcgtcgtattcgtctacggcggagaaagcgttttcattgatatctaaaggatggaaagaggttcgttcttccgccgacgcagatctacaactcatcagaaacagagctaaggagctcgaaaacttccttagctcagtaccaacaattaccgctaccgcaactgcaactgcaactactccgggagaaattgattttgttaagaagctccgtccaaaattatcggaaatacgtagggcttattcgtcgccggacttcaattgggcaccgaaagggaagcttaggatcgatttatcgggaattacgaatgcgattgtgacggaatcggaagatgagaaattggggaaatggagaagagagaagaggtttaaggatgaaaagcaatttggggaattgagtaattgggaaccaattagggcttttaggaatcgattaagagagatggaggttgagattaagagttcgaattcgtcttctccggtggagattttcgaagggattaagaatagtgaatttatggagaaagtaaaatcgagcttcaagtcaatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="43324" stop="44546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43624" g_stop="44246" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U576019" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43624" e_stop="44246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAGAGCAATTGCTAAAACCCTAGAAAAA-AATGATGAATTTCA-AGCCGCCGGAGACTAAAACGACGCCGTCATCGTCGTCGTATTCGTCTACGGCGGAGAAAGCGTTTTCATTGATATCTAAAGGATGGAAAGAGGTTCGTTCTTCCGCCGACGCAGATCTACAACTCATCAGAAACAGAGCTAAGGAGCTCGAAAACTTCCTTAGCTCAGTACCAACAATTACCGCTACCGCAACTGCAACTGCAACTGCAACTACTCCGGGAGAAATTGATTTTGTTAAGAAGCTCCGTCCAAAATTATCGGAAATACGTAGGGCTTATTCGTCGCCGGACTTCAATTGGGCACCGAAAGGGAAGCTTAGGATCGATTTATCGGGAATTACGAATGCGATTGTGACGGAATCGGAAGATGAGAAATTGGGGAAATGGAGAAGAGAGAAGAGGTTTAAGGATGAAAAGCAATTTGGGGAATTGAGTAATTGGGAACCAATTAGGGCTTTTAGGAATCGATTAAGAGAGATGGAGGTTGAGATTAAGAGTTCGAATGCGTCTTCTCCGGTGGAGATTTTCGAAGGGATTAAGAATAGTGAATTTATGGAGAAAGTAAAATCGAGCTTC</genome_strand>
        <mrna_strand>AAAAAACAGAGCAATTGCTAAAACCCTAGAAAAAAAATGATGAATTTCAGAGCCGCCGGAGACTAAAACGACGCCCCCATCGTCGTCGTATTCGTCTACGGCGGAGAAAGCGTTTTCATTGATATCTAAAGGATGGAAAGAGGTTCGTTCTTCCGCCGACGCAGATCTACAACTCATCAGAAACAGAGCTAAGGAGCTCGAAAACTTCCTTAGCTCAGTACCAACAATTACCGCTA---C--C-GCAACTGCAACTGCAACTACTCCGGGAGAAATTGATTTTGTTAAGAAGCTCCGTCCAAAATTATCGGAAATACGTAGGGCTTATTCGTCGCCGGACTTCAATTGGGCACCGAAAGGGAAGCTTAGGATCGATTTATCGGGAATTACGAATGCGATTGTGACGGAATCGGAAGATGAGAAATTGGGGAAATGGAGAAGAGAGAAGAGGTTTAAGGATGAAAAGCAATTTGGGGAATTGAGTAATTGGGAACCAATTAGGGCTTTTAGGAATCGATTAAGAGAGATGGAGGTTGAGATTAAGAGTTCGAATTCGTCTTCTCCGGTGGAGATTTTCGAAGGGATTAAGAATAGTGAATTTATGGAGAAAGTAAAATCGAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565348" ref_strand="+" ref_description="SGN-U565348 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ggatacgcgtaaggtctgtatacactttatcctctacttgtggaattacacgataggagtaaggtctgcgtacactctatccttgcagactctacttgtgggattacatgatacgagtaagatctgcgtacactctattctctacttgtgggattacatgataggagtaaggtctgtgtacactctgtccttcgtagactctacttgtgagattacattgggtatgtcgttgttgttgattgttataaaagagaaaagtggtggctttttgggcaaaagaaccaaaaagttactacctttttcttttgtagaaacagcccgaacaaaaggagttcacgaaacgttttttttttgtcaaaaatttaagttttgaactttttgagcccatgcgacaatgttaatgttatgtttatgtacgaggaagcaaaattacttaaaataaggctaactagttggaggtgatttgcttcacggactacctatggaggaattatagcacgaagattatcttgtgggaattgtgatctatatatatagtttttacgcagtcaataatttatgtaagtgttagttatacaagttttacactagaagctaaagttgtactagtaatgtagagttgtatgccgaatttttttagaaaagagttttatatgaaacgttgtattaaaattgatccaacttgctacttatcacggctttccttttcacatgataaatctgctgtttttgtgtttggtctaaggatttttcaaaagtcaattttgcaaggaaccaaaaaattcaaagggatttccgccactggacgtgccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="44237" stop="45964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44536" g_stop="45322" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45323" i_stop="45638" i_length="316">
            <donor d_prob="0.986" d_score="0.84"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45639" g_stop="45665" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="816" r_length="27" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U565348" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44536" e_stop="45322"/>
          <exon e_start="45639" e_stop="45665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACGCGTAAGGTCTGTATACACTTTATCCTCTACTTGTGGAATTACACGATAGGAGTAAGGTCTGCGTACACTCTATCCTTGCAGACTCTACTTGTGGGATTACATGATACGAGTAAGATCTGCGTACACTCTATTCTCTACTTGTGGGATTACATGATAGGAGTAAGGTCTGTGTACACTCTGTCCTTCGTAGACTCTACTTGTGAGATTACATTGGGTATGTCGTTGTTGTTGATTGTTATAAAAGAGAAAAGTGGTGGCTTTTTGGGCAAAAGAACCAAAAAGTTACTACCTTTTTCTTTTGTAGAAACAGCCCGAACAAAAGGAGTTCATGAAAC-TTTTTTTTTTGTCACAAATTTAAGTTTTGAACTTTTTGAGCCCATGCGACAATGTTAATGTTATGTTTATGTACGAGGAAGCAGAATTACTTAAAATAAGGCTAACTAGTTGGAGGTGATTTGCTTCACGGACTAGCTATGGAGGAATTATAGCACGAAGATTATCTTGTGTGAATTGTGATCTATATATATAGTTTTTACGCAGTCAATAATTTATGTAAGTGTTAGTTATACGAGTTTTACACTAGAAGCTAAAGTTGTACTAGTAATGTAGAGTTGTATGCCGAATTTTTTTAGAAGAGAGTTTTATATGAAACGTTGTATTAAAATTGATCCGACTTGCTACTTATCACGGCTTTCCTTTTCACATGATTAATCTGCTGTTTTTGTGTTTTGTCTAATGATTTTTCAGAAGTCAA-TTTGCAAGGAACCAGAAGAGTCGAAGGTTAGTGTCTTACTTCTACATTTCGTGAAGTTGTAATTGCAAGGTTTTAGATGTGTTTGGACTTTCAACGAGTTGTGTAAATAATGCTTTGCTTTGTCGGTTAAGGTAAGGAAGTTTGAAATGACGATCTTGATTGAAGAACAGCAAGGAAACACAACCTTATAAACCGACCATTATAACCTTCGATTGTACAATGGTCGGTTTATAATGTTTTTGGATTTATATCTTTTTTGAAAAGTGGACATATTAATGTTTAACTAGAAAATGACTGAGGATGAAGCTATTTGGTTCCTTTACATGATCTTTGTCTATGCAGGGAGTTCCGCCACTGGACGTGCCAGAG</genome_strand>
        <mrna_strand>GGATACGCGTAAGGTCTGTATACACTTTATCCTCTACTTGTGGAATTACACGATAGGAGTAAGGTCTGCGTACACTCTATCCTTGCAGACTCTACTTGTGGGATTACATGATACGAGTAAGATCTGCGTACACTCTATTCTCTACTTGTGGGATTACATGATAGGAGTAAGGTCTGTGTACACTCTGTCCTTCGTAGACTCTACTTGTGAGATTACATTGGGTATGTCGTTGTTGTTGATTGTTATAAAAGAGAAAAGTGGTGGCTTTTTGGGCAAAAGAACCAAAAAGTTACTACCTTTTTCTTTTGTAGAAACAGCCCGAACAAAAGGAGTTCACGAAACGTTTTTTTTTTGTCAAAAATTTAAGTTTTGAACTTTTTGAGCCCATGCGACAATGTTAATGTTATGTTTATGTACGAGGAAGCAAAATTACTTAAAATAAGGCTAACTAGTTGGAGGTGATTTGCTTCACGGACTACCTATGGAGGAATTATAGCACGAAGATTATCTTGTGGGAATTGTGATCTATATATATAGTTTTTACGCAGTCAATAATTTATGTAAGTGTTAGTTATACAAGTTTTACACTAGAAGCTAAAGTTGTACTAGTAATGTAGAGTTGTATGCCGAATTTTTTTAGAAAAGAGTTTTATATGAAACGTTGTATTAAAATTGATCCAACTTGCTACTTATCACGGCTTTCCTTTTCACATGATAAATCTGCTGTTTTTGTGTTTGGTCTAAGGATTTTTCAAAAGTCAATTTTGCAAGGAACCAAAAAATTCAAAG............................................................................................................................................................................................................................................................................................................................GGATTTCCGCCACTGGACGTGCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597327" ref_strand="+" ref_description="SGN-U597327 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157356224|emb|CAO50151.1| (e_value=7e-108) unnamed; (*ATH) AT3G11670.2 (e_value=2e-100)  Symbol: None | digalactosyldiacylglycerol synthase 1 (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid galactosyltransferase, identical to digalactosyldiacylglycerol synthase (DGD1) GI:5354158 (Arabidopsis thaliana) | chr3:3681612-3684552 REVE... ; (*SWP) sp|Q6DW74|DGDG1_LOTJA (e_value=5e-101) Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1; ">
      <seq>ggcataagaaaagattctcagacaagatcgttgagagtttatgcagcaaacggcgaaacaagctattacctgaaggagattgttccctgatcgaaggcgataatatgattgatgaactagaactacgaattgccagtgtactacgaagtactggtcatcattatgaaggtgggttttggagcaattcgacaaagcaaaacgtatcagatggtaaaagacatgtagccatagtcacaactgctagccttccgtggatgaccggaacagctgtcaatcctctcttccgagcggcttatttggccaagtctgaaaagcagaacgttacactcttggttccatggctatgtaaatcggaccaagaactagtttatccaaacaatcttacatttagttcaccagaagagcaggaactctacatacggaattggcttgaggaaagagtcggtttcaagactgatttcaagatctcgttttatcctggaaagttctccaaggaaaggcgaagtatactaccagctggagatactactcagtttatcccatcacgggatgctgatattgcaatcttagaggagccagaacatctaaactggtaccaccatggcaaacgttggactgataagtttaaccatgtcgttggtattgttcacacaaattatttggagtatatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="45511" stop="46872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45714" g_stop="45726" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45727" i_stop="45815" i_length="89">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45816" g_stop="46288" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="485" r_length="472" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46289" i_stop="46383" i_length="95">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46384" g_stop="46572" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="674" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U597327" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45714" e_stop="45726"/>
          <exon e_start="45816" e_stop="46288"/>
          <exon e_start="46384" e_stop="46572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATAAGAAAAGGTAATAGTCTGTCAAACGGTTTGTGATTTTTGTAAACTTGTTGATTCGATCTGAGTTTGTGTTTCTCTGGATTGTTCTACTTGCAATAGATATCTCAGACAAGATCGTTGAGAGTTTATGCAGCAAACGGCGAAACAAGCTATTACCTGAAGGAGATTGTTCCCTGATCGAAGGCGATAATATGATTGATGAACTAGAACTACGAATTGCCAGTGTACTACAAAGTACTGGTCATCATTATGAAGGTGGGTTTTGGAGCAATTCGACAAAGCAAAACGTATCAGATGGTAAAAGACATGTAGCCATAGTCACAACTGCTAGCCTTCCGTGGATGACCGGAACAGCTGTCAATCCTCTCTTCCGAGCGGCTTATTTGGCCAAGTCTGAAAAGCAGAACGTTACACTCTTGGTTCCATGGCTATGTAAATCGGACCAAGAACTAGTTTATCCAAACAATCTTACATTTAGTTCACCAGAAGAGCAGGAACTCTACATACGGAATTGGCTTGAGGAAAGAGTCGGTTTCAAGACTGATTTCAAGATCTCGTTTTATCCTGGAAAGGTATTTCACGCGAACTTACTGCATATTATTCAGTAAAACAAAATGATGTTACTGAAAAATGCTGTGATTATTTGACACTTCGTTTTCCTCTCCAGTTCTCCAAGGAAAGGCGAAGTATACTACCAGCTGGAGATACTACTCAGTTTATCCCATCACGGGATGCTGATATTGCAATCTTAGAGGAGCCAGAACATCTAAACTGGTACCACCATGGCAAACGTTGGACTGATAAGTTTAACCATGTCGTTGGTATTGTTCACACAAATTATTTGGAGTATATCAAA</genome_strand>
        <mrna_strand>GGCATAAGAAAAG.........................................................................................AT-TCTCAGACAAGATCGTTGAGAGTTTATGCAGCAAACGGCGAAACAAGCTATTACCTGAAGGAGATTGTTCCCTGATCGAAGGCGATAATATGATTGATGAACTAGAACTACGAATTGCCAGTGTACTACGAAGTACTGGTCATCATTATGAAGGTGGGTTTTGGAGCAATTCGACAAAGCAAAACGTATCAGATGGTAAAAGACATGTAGCCATAGTCACAACTGCTAGCCTTCCGTGGATGACCGGAACAGCTGTCAATCCTCTCTTCCGAGCGGCTTATTTGGCCAAGTCTGAAAAGCAGAACGTTACACTCTTGGTTCCATGGCTATGTAAATCGGACCAAGAACTAGTTTATCCAAACAATCTTACATTTAGTTCACCAGAAGAGCAGGAACTCTACATACGGAATTGGCTTGAGGAAAGAGTCGGTTTCAAGACTGATTTCAAGATCTCGTTTTATCCTGGAAAG...............................................................................................TTCTCCAAGGAAAGGCGAAGTATACTACCAGCTGGAGATACTACTCAGTTTATCCCATCACGGGATGCTGATATTGCAATCTTAGAGGAGCCAGAACATCTAAACTGGTACCACCATGGCAAACGTTGGACTGATAAGTTTAACCATGTCGTTGGTATTGTTCACACAAATTATTTGGAGTATATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582945" ref_strand="+" ref_description="SGN-U582945 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|49616595|gb|AAT67159.1| (e_value=9e-120) digalactosyldiacylglycerol; (*ATH) AT3G11670.1 (e_value=1e-113)  Symbol: None | digalactosyldiacylglycerol synthase 1 (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid galactosyltransferase, identical to digalactosyldiacylglycerol synthase (DGD1) GI:5354158 (Arabidopsis thaliana) | chr3:3680904-3684552 REVE... ; (*SWP) sp|Q6DW76|DGDG1_SOYBN (e_value=2e-116) Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Glycine max GN=DGD1; ">
      <seq>ggagtatatcaaaagagagaagaatggagctcttcaagctttccttgtgaaacacgtaaataattgggtcacaagagcgcattgtgacaaggtgcttcgcctttctgctgctacacaggatttacccaggtctgtggtctgcaacgttcatggtgtaaatccgaagtttttgaaaattggagaaaaaatggctgcagaaagacaaaacggtcagcaagttttctccaaaggtgcatacttcttgggaaaaatggtttgggctaagggttacagggagttaatagaccttttagcgaagcacaaaagtgaccttgatggttttaatatggatttgtttggcaacggggaagacgctcatgaagtgcagacaacggctaggacgttaaatttgaatgtcaacttcatgaaaggcagagaccacgcggatgattctcttcatagttataaagtctttataaatcctagtatcagcgatgtactctgtacagctacagctgaggcactcgctatggggaaatttgtagtttgtgcaaatcatccgtctaatgagttcttccaggcatttcctaactgcttgacgtataagacatcagaagactttgtaacaaaggttaaagaggcaatgaccggtgaacctcagcctctaactccccgagaacaatataagctttcttgggaacctgcaacacaaagattcatcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="46260" stop="48010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46560" g_stop="46650" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46651" i_stop="46826" i_length="176">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46827" g_stop="47176" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="441" r_length="350" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47177" i_stop="47447" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47448" g_stop="47710" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="704" r_length="263" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U582945" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46560" e_stop="46650"/>
          <exon e_start="46827" e_stop="47176"/>
          <exon e_start="47448" e_stop="47710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTATATCAAAAGAGAGAAGAATGGAGCTCTTCAAGCTTTCCTTGTGAAACACGTAAATAATTGGGTCACAAGAGCGCATTGTGACAAGGTAATTTTCTTATATATTGATTGCGTTCTCCAAGATGGGAGTAGGAAAAGTTGTTCGTTAAATTCTTTACAGCTTTACAGACCAAAAGATGCGTTAGCACTTTGAAATGTGTTTATCGTGTCTAATTATTTAATTTATCCCGGTTCTCTGATGGAAATGCTAATTTCGTTGTTTAGGTGCTTCGCCTTTCTGCTGCTACACAGGATTTACCCAGGTCTGTGGTCTGCAACGTTCATGGTGTAAATCCGAAGTTTTTGAAAATTGGAGAAAAAATGGCTGCAGAAAGACAAAACGGTCAGCAAGTTTTCTCTAAAGGTGCATACTTCTTGGGAAAAATGGTTTGGGCTAAGGGTTACAGGGAGTTAATAGACCTTTTAGCGAAGCACAAAAGTGACCTTGATGGTTTTAATATGGATTTGTTTGGCAACGGGGAAGACGCTCATGAAGTGCAGACAACGGCTAGGACGTTAAATTTGAATGTCAACTTCATGAAAGGCAGAGACCACGCGGATGATTCTCTTCATAGGTATGAAATATGAATCCTTTTAATAGAACCCCTTTTAGTTTTTCTGCGAAGATGCTGCTGGTAATATGTTATATCATAAAGCTGCTTTAATACTTCGATCTTTAGATAGAACATAGGCGCTACCTATACTTTACACACGCATACGTAGACTTGAAAGCATATTTTTTGGTTCTTGAATGAATTTGAAAGGCGATTGTTATGATCGTAGTCACTTGCGTAAAAAATGTACTTCATGGTTCATCTTTCCTGATCGATAAATTTTTACTTGCAGTTATAAAGTCTTTATAAATCCTAGTATCAGCGATGTACTCTGTACAGCTACAGCTGAGGCACTCGCTATGGGGAAATTTGTAGTTTGTGCAGATCATCCGTCTAATGAGTTCTTCCAGGCATTTCCTAACTGCTTGACGTATAAGACATCAGAAGACTTTGTAACAAAGGTTAAAGAGGCAATGACCGGTGAACCTCAGCCTCTAACTCCCGAGGAACAATATAAGCTTTCGTGGGAAGCTGCAACACAGAGATTCATCGAAT</genome_strand>
        <mrna_strand>GGAGTATATCAAAAGAGAGAAGAATGGAGCTCTTCAAGCTTTCCTTGTGAAACACGTAAATAATTGGGTCACAAGAGCGCATTGTGACAAG................................................................................................................................................................................GTGCTTCGCCTTTCTGCTGCTACACAGGATTTACCCAGGTCTGTGGTCTGCAACGTTCATGGTGTAAATCCGAAGTTTTTGAAAATTGGAGAAAAAATGGCTGCAGAAAGACAAAACGGTCAGCAAGTTTTCTCCAAAGGTGCATACTTCTTGGGAAAAATGGTTTGGGCTAAGGGTTACAGGGAGTTAATAGACCTTTTAGCGAAGCACAAAAGTGACCTTGATGGTTTTAATATGGATTTGTTTGGCAACGGGGAAGACGCTCATGAAGTGCAGACAACGGCTAGGACGTTAAATTTGAATGTCAACTTCATGAAAGGCAGAGACCACGCGGATGATTCTCTTCATAG...............................................................................................................................................................................................................................................................................TTATAAAGTCTTTATAAATCCTAGTATCAGCGATGTACTCTGTACAGCTACAGCTGAGGCACTCGCTATGGGGAAATTTGTAGTTTGTGCAAATCATCCGTCTAATGAGTTCTTCCAGGCATTTCCTAACTGCTTGACGTATAAGACATCAGAAGACTTTGTAACAAAGGTTAAAGAGGCAATGACCGGTGAACCTCAGCCTCTAACTCCCCGAGAACAATATAAGCTTTCTTGGGAACCTGCAACACAAAGATTCATCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604843" ref_strand="+" ref_description="SGN-U604843 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aattgggcacattttagatagacaaagaccacctatcataattttacaaattttacacatcctatttacttttcttgctgcatcactagttacaaaaatcatcaaaataaaacctgaaacactagtgcagaggtggagctagggaacacgaagggtttcatccgaatctctttgcaaaaaaaaatacgctatatataagattaaaatgactttttacgtgaaaatcctggttacgacactaataccaggtaacgattggagttatgagtatgtatccaagttacatcacacctatacaggtcaaatgagatgtgtatatatataactaccagccataaattgggttttctacctggggaggtaagagattgagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="48604" stop="47628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48304" g_stop="47928" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U604843" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48304" e_stop="47928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGACACATTTTAGATAGACAAAGAACATATATCATAATTTTACAAATTTTACACATCCTATTTACTTTTCTTGCTGCATCACTAGTTACAAAAATCATCAAAATAAAACCTGAAACACTAGTGCAGAGGTGGAGCTAGGGAACACGAAGGGTTTCATCCGAATCTCTTTGCAAAAAAAAATACGCTATATATAAGATTAAAATGACTTTTTACGTGAAAATCCTGGTTACGACACTAATACCAGGTAACGATTGGAGTTATGAGTATGTATCCAAGTTACATCACACCTATACAGGTCAAATGAGATGTGTATATATATAACTACCAGCCATAAATTGGGTTTTCTACCTGGGGAGGTAAGAGATTGAGATCT</genome_strand>
        <mrna_strand>AATTGGGCACATTTTAGATAGACAAAGACCACCTATCATAATTTTACAAATTTTACACATCCTATTTACTTTTCTTGCTGCATCACTAGTTACAAAAATCATCAAAATAAAACCTGAAACACTAGTGCAGAGGTGGAGCTAGGGAACACGAAGGGTTTCATCCGAATCTCTTTGCAAAAAAAAATACGCTATATATAAGATTAAAATGACTTTTTACGTGAAAATCCTGGTTACGACACTAATACCAGGTAACGATTGGAGTTATGAGTATGTATCCAAGTTACATCACACCTATACAGGTCAAATGAGATGTGTATATATATAACTACCAGCCATAAATTGGGTTTTCTACCTGGGGAGGTAAGAGATTGAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566041" ref_strand="+" ref_description="SGN-U566041 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147845891|emb|CAN82167.1| (e_value=1e-102) hypothetical; (*ATH) AT4G31490.1 (e_value=2e-100)  Symbol: None | coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative, similar to Coatomer beta subunit (Beta-coat protein) (Beta-COP) from {Rattus norvegicus} SP:P23514, {Mus musculus} SP:Q9JIF7, {Homo sapiens} SP:P53618... ; (*SWP) sp|Q9SV20|COPB2_ARATH (e_value=2e-99) Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490; ">
      <seq>aataacatatttgaacattctgttattgtattttgttgtttacaacttaacaaacagcacactctatacactctctctctggatcttgcagatctgagtatagaccaaattttttgttcctacaaccgaatttctcctctgaagattcaatctgattcaacatttgctggatttgatctggtaaggtgactagaagaaaaaaatggagaagtcatgctcattgttgatacattttgataagggtacgcctgctcttgccaatgagatcaaagaagcacttgaaggaaatgatatccccgccaaggttgaagctatgaagaaagccgtaatgcttttattgaatggagaaaccctacctcagctcttcatcactattattagatatgtcttgccttctgaggatcacacaattcaaaaactgttacttttgtatttggagatcattgagaagacagattctaaggggcgtgtgctgcccgagatgatcctaatctgccagaacttgaggaataatttgcagcatcccaatgagtaccttcgtggagctacgttgagatttctttgcaggctgaatgaggttgatataattgaacctctaattccatcaattatgaacaacttggagcaccgacatccatttgtgaggaggaatgcaattcttgctgtgatgtctgtttacaagctcccacatggtgagcagctcctggtagacgcaccagagaagattgagaatctcctaaccactgagcaggatccatcggctaagaggaatgcatttcttatgctcttccaatgtgctcaggagcgtgccatcaattacctcttgactcatgttgatagagtctctgaattggggccagttaccttcaatggttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="53262" stop="57758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53561" g_stop="53747" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53748" i_stop="56762" i_length="3015">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56763" g_stop="57458" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="877" r_length="697" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U566041" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53561" e_stop="53747"/>
          <exon e_start="56763" e_stop="57458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACATATTTGAACATTCTATTGTTTGTATTTTGTTGCTTACAACTTAACAAACAGCACACTCTATACACTCTCTCTCTCTCTCTGGATCTTGCAGATCTGAGTATAGACCAAATTTTTTGTTCCTACAACCGAATTTCTCCTCTGAAGATTCAATCTGATTCAACATTTGCTGGATTTGATCTGGTGAGTGTGTTATTGTTTAATTTCTGCTGCTGTGTAATCAGTTTTATCTTCTGTGCGCCATTGATTTTCGTCCTTAATTGTGTTTGTTGCTCGATTTCTATATCTGGGTCATCGTGTATCTATGCTTTGCGTATTGGGTAGGGTAGGCGTTGAACTTTAGGAATTTGATGGTGTAGGGCTAGATGTCTCGGTTTAGTTATGCTAGTTTGATCGATTTAGATTTTTGTGTATAACTAATTTTCGTTCAAGTTCTGTTCTTTGTTTGATTTCTCTATTTGGGTCATTTTGTATCAGTGATTTGCGAATTGGGTTGGCGTTAAACTTTAGGAATTTGATGGTTTAGGGCTAAATGTCTCGGTTCAGTTATGCTAGTTTGATCGATTTTGATTTTTGTGTATAACTAATTTTCGTTCAAGTTCTGTTCTTTGCTCGATTTCTCTATCTGGGTCAATTTGTGTCAGTGATTTGTGTATTGGGTTGGCTTTAAACTTTAGGAATTTGATGGTGCAGGGCTAAATGTCTTGGTTCAGCTATCGATTTTGATCGATTTCTCTAATATCGTAGTTGTGTTATTTGTTTGATTTCTCTATCTGGGTCATCTTGTATCTGTGCTCTGCCTTTTAGATTAACCTTAAATTTTAAATTTTTTGTTCCAGGACTGTTTTTTTGAACGATTTCTGTATCTGGGTCATCTTGTATCTGTCGTTTGCTTGTTGGGTTAACATCAAACTTCAATTTTGTCCTAGTTCTGTCTGTTGCACGATTTCTCTATTGGGTTGGCATTGAAGTTTAGGAATTTGATGGTGTAGGGTTAAATGTCTACTTCGGTTATGCTAGTTTGATGAATTATATTATGTATACAACTGATTTTCGTCCTTGCTGTGTTGTTTATTCGATTCTCTATATGGGTTCCCTTGTATCTGTGGTTGGCTTGTTGTGTTGACATGAAACTTTAATTTTTGTCCCAGTTCTGTTTGTTGCAGGATTTCTCTATTTGGGTCATCTTGTATCTGTGATTTGCATATTGGGCTGATGATGAACTTCGGGAAGTTGATGGTTTAGGGATAAATGTCTCATTCAGCTATGCTAGTTAGATTGAATTATACTATTGTACAACTGATTTTCGTCCTAGTTGTGTTATTTGTTCGAATTCTCTACATGGGTACCCTTGTATCTGTGGTTTGCTTGTTGGCTTGACATTCAATTATTGTCCTAGTTCTGTTTGTTGTATTATTTCCATATCTGGGTCATCTTGTATATGTGATTTGGATATTGGGTTGGCGTTGAACTTTAGGAATTTGATGGCTTTGGGATAAATGTTTAATTCAGTTATGCTAGTTTGATCGTATTATATTATGTGTACAACTGATTTTCGTCCGTTGTGTTTTTATTCGATTTCTCTATATGGGTACCCTTGTAACTGTGGTTCGCTTGTTGGTTTGACATCAAACTTAATTTTTGTCGTAGTTCTGTTTTTTGTTTTATTTCTATATTTGGGTCATTTTACATCTGTGATTTGCTTATTGGGTTGGCGTTGAACTTTAGGAATGAGATGGCTTAGGGCTAAATGGCTCGTTCAGTCATGCTAGTTTGATCGATTTATAGTATGTGTACAACTGATTTTTAGTCCTAGTTGTGTTATTTGCTCCATTTCTCTGTATGGGTACCCTTTTGTCTGTGGTGTGCTTGTTGGGTTGACGTCGAACTTTAATTTTTGTTCTACTTCTATTCTTTGCTCGATTTTTCTATCTCTGTCATCTTGTATTTATGCTTGCTTACTGGGTTGACCCCAAACATTAACATTTTCATCCTAGTTCTGCTCTTTGCCCTATTTCTCTATCTGGGTCCTCTTGTATCTGTGTTTGCTTATTGGGTTGTCACCACACATTAAAAATTTATTCCTAGTTCTGCTCTTTTCTCGGTTTCTCTACCTGTGTCATCTTGTATCTGTGCTGTGCTTATTGGGTTGGCATCCAACTTGAGATATTTGATGGTTTACGGTTAGATGTCTTGTTCGTTATGCTATTTTGATCAATTTGTAGATCTGACTTTGGTGATTGAATAAGAAAAGCTGTGTGCTTCTTCCAGTTTGTTTGGAAGGTTGTTACCTATGCTGTTATATTATGTTGTTAGTTTAACTATAATGCTTGTTTTGATTTTTACTTAAGTTTTATTAGATTGTATCGTTAACTTTGTCGATAGGTAACAAAGAAAAGTTCCATTTTGTGTAAAAAGTGATTTGGTGTGATTGGTCATTATCTTCTTCTTTTTTTTTTTTAAATTTTGTTTTTACTTGTTATTTAATAATCCTAATTTATCGTTTACCTTACCTTTTTATAGTAGCTCTACCCCGTATTTAAGTGCACCATTACGTAACAACATAAACTCCGTAACAACATAAACTCAGTAATTTTTAAATTTCAATATCACATTTTTGTTGTGTTTACCACTTCAATAATATAATTTAGTATTGACTTGGATTCTGGCTTGTAGTAAGATTGAATCTGGTATTGGGTTGTCTGTTCCTTATATTGCTAAAGAATCAAAGGAGCATCACTAAGGGGTCGTTTGGTTGGGCATAAGTTATCCCATGATTATATATCCCGGGATAAGTTATCCCACCATGTATGTGGGATAAGTTATCCCATCATTATGGTATAAATGGTGGGATAAGTTATCCCAAACTTGGCAACCAAACAAGACACCAAAATTTTATCCCTAGACTATTTATTTTTATCCCTCACACCAAACAACCCCTAAGAGTTTAATTATCTTGCAGTTCATTACTTCATTTCGTGCTTTTTCCCCAGTTTTTAAGACGTATTGTGATTTTTGATCTCCTTGTAAAATAGATGCATTCACAGAGTTGGTAGATAGAACAGCAATTGTAGTAATTTAACTGGCGCAATAGAAGAAAACTAGGACTCCTTTTCTTGAACCTTATGACTATATTCCTTCTTTTGTAACTATAAATATTATCAGGTCGAAATTTATGAGAAGATACATTAATTTCAGGTAAGGTGACTAGAAGAAAAAAATGGAGAAGTCATGCTCATTGTTGATACATTTTGATAAGGGTACGCCTGCTCTTGCCAATGAGATCAAAGAAGCACTTGAAGGAAATGATATCCCCGCCAAGGTTGAAGCTATGAAGAAAGCCGTAATGCTTTTATTGAATGGAGAAACCCTACCTCAGCTCTTCATCACTATTATTAGATATGTCTTGCCTTCTGAGGATCACACAATTCAAAAACTGTTACTTTTGTATTTGGAGATCATTGAGAAGACAGATTCTAAGGGGCGTGTGCTGCCCGAGATGATCCTAATCTGCCAGAACTTGAGGAATAATTTGCAGCATCCCAATGAGTACCTTCGTGGAGCTACGTTGAGATTTCTTTGCAGGCTGAATGAGGTTGATATAATTGAACCTCTAATTCCATCAATTATGAACAACTTGGAGCACCGACATCCATTTGTGAGGAGGAATGCAATTCTTGCTGTGATGTCTGTTTACAAGCTCCCACATGGTGAGCAGCTCCTGGTAGACGCACCAGAGAAGATTGAGAATCTCCTAACCACTGAGCAGGATCCATCGGCTAAGAGGAATGCATTTCTTATGCTCTTCCAATGTGCTCAGGAGCGTGCCATCAATTACCTCTTGACTCATGTTGATAGAGTCTCTG-ATTGGGGCGAGTTACTTCAGATGGTTGT</genome_strand>
        <mrna_strand>AATAACATATTTGAACATTCTGTTAT-TGTATTTTGTTGTTTACAACTTAACAAACAGCACACTCTATACA------CTCTCTCTCTGGATCTTGCAGATCTGAGTATAGACCAAATTTTTTGTTCCTACAACCGAATTTCTCCTCTGAAGATTCAATCTGATTCAACATTTGCTGGATTTGATCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGTGACTAGAAGAAAAAAATGGAGAAGTCATGCTCATTGTTGATACATTTTGATAAGGGTACGCCTGCTCTTGCCAATGAGATCAAAGAAGCACTTGAAGGAAATGATATCCCCGCCAAGGTTGAAGCTATGAAGAAAGCCGTAATGCTTTTATTGAATGGAGAAACCCTACCTCAGCTCTTCATCACTATTATTAGATATGTCTTGCCTTCTGAGGATCACACAATTCAAAAACTGTTACTTTTGTATTTGGAGATCATTGAGAAGACAGATTCTAAGGGGCGTGTGCTGCCCGAGATGATCCTAATCTGCCAGAACTTGAGGAATAATTTGCAGCATCCCAATGAGTACCTTCGTGGAGCTACGTTGAGATTTCTTTGCAGGCTGAATGAGGTTGATATAATTGAACCTCTAATTCCATCAATTATGAACAACTTGGAGCACCGACATCCATTTGTGAGGAGGAATGCAATTCTTGCTGTGATGTCTGTTTACAAGCTCCCACATGGTGAGCAGCTCCTGGTAGACGCACCAGAGAAGATTGAGAATCTCCTAACCACTGAGCAGGATCCATCGGCTAAGAGGAATGCATTTCTTATGCTCTTCCAATGTGCTCAGGAGCGTGCCATCAATTACCTCTTGACTCATGTTGATAGAGTCTCTGAATTGGGGCCAGTTACCTTCAATGGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595256" ref_strand="+" ref_description="SGN-U595256 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147845891|emb|CAN82167.1| (e_value=4e-91) hypothetical; (*ATH) AT4G31490.1 (e_value=6e-89)  Symbol: None | coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative, similar to Coatomer beta subunit (Beta-coat protein) (Beta-COP) from {Rattus norvegicus} SP:P23514, {Mus musculus} SP:Q9JIF7, {Homo sapiens} SP:P53618... ; (*SWP) sp|Q9SV20|COPB2_ARATH (e_value=5e-88) Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490; ">
      <seq>ctggatcttgcagatctgagtatagaccaaattttttgttcctacaaccgaatttctcctctgaagattcaatctgattcaacatttgctggatttgatctggtaaggtgactagaagaaaaaaatggagaagtcatgctcattgttgatacattttgataagggtacgcctgctcttgccaatgagatcaaagaagcacttgaaggaaatgatatccccccaaggttgaagctatgaagaaagccgtaatgcttttattgaatggagaaaccctacctcagctcttcatcactattattagatatgtcttgccttctgaggatcacacaattcaaaaactgttacttttgtatttggagatcattgagaagacagattctaaggggcgtgtgctgcccgagatgatcctaatctgccagaacttgaggaataatttgcagcatcccaatgagtaccttcgtggagctacgttgagatttctttgcaggctgaatgaggttgatataattgaacctctaattccatcaattatgaacaacttggagcaccgacntccatttgtgaggaggaatgcaattcttgctgtgatgtctgtttacaagctcccacatggtgagcagctcctggtagacgcaccananaanantganaatctcctaaccactgagcagnanccatcggctaanaggaatgcatttcttatgctcttccantgtgctcngnagcgtgccatcaattacctctngactcangttgatagagtctctgannggggcgagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="53346" stop="57744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53646" g_stop="53747" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53748" i_stop="56762" i_length="3015">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56763" g_stop="57444" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="783" r_length="681" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U595256" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53646" e_stop="53747"/>
          <exon e_start="56763" e_stop="57444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATCTTGCAGATCTGAGTATAGACCAAATTTTTTGTTCCTACAACCGAATTTCTCCTCTGAAGATTCAATCTGATTCAACATTTGCTGGATTTGATCTGGTGAGTGTGTTATTGTTTAATTTCTGCTGCTGTGTAATCAGTTTTATCTTCTGTGCGCCATTGATTTTCGTCCTTAATTGTGTTTGTTGCTCGATTTCTATATCTGGGTCATCGTGTATCTATGCTTTGCGTATTGGGTAGGGTAGGCGTTGAACTTTAGGAATTTGATGGTGTAGGGCTAGATGTCTCGGTTTAGTTATGCTAGTTTGATCGATTTAGATTTTTGTGTATAACTAATTTTCGTTCAAGTTCTGTTCTTTGTTTGATTTCTCTATTTGGGTCATTTTGTATCAGTGATTTGCGAATTGGGTTGGCGTTAAACTTTAGGAATTTGATGGTTTAGGGCTAAATGTCTCGGTTCAGTTATGCTAGTTTGATCGATTTTGATTTTTGTGTATAACTAATTTTCGTTCAAGTTCTGTTCTTTGCTCGATTTCTCTATCTGGGTCAATTTGTGTCAGTGATTTGTGTATTGGGTTGGCTTTAAACTTTAGGAATTTGATGGTGCAGGGCTAAATGTCTTGGTTCAGCTATCGATTTTGATCGATTTCTCTAATATCGTAGTTGTGTTATTTGTTTGATTTCTCTATCTGGGTCATCTTGTATCTGTGCTCTGCCTTTTAGATTAACCTTAAATTTTAAATTTTTTGTTCCAGGACTGTTTTTTTGAACGATTTCTGTATCTGGGTCATCTTGTATCTGTCGTTTGCTTGTTGGGTTAACATCAAACTTCAATTTTGTCCTAGTTCTGTCTGTTGCACGATTTCTCTATTGGGTTGGCATTGAAGTTTAGGAATTTGATGGTGTAGGGTTAAATGTCTACTTCGGTTATGCTAGTTTGATGAATTATATTATGTATACAACTGATTTTCGTCCTTGCTGTGTTGTTTATTCGATTCTCTATATGGGTTCCCTTGTATCTGTGGTTGGCTTGTTGTGTTGACATGAAACTTTAATTTTTGTCCCAGTTCTGTTTGTTGCAGGATTTCTCTATTTGGGTCATCTTGTATCTGTGATTTGCATATTGGGCTGATGATGAACTTCGGGAAGTTGATGGTTTAGGGATAAATGTCTCATTCAGCTATGCTAGTTAGATTGAATTATACTATTGTACAACTGATTTTCGTCCTAGTTGTGTTATTTGTTCGAATTCTCTACATGGGTACCCTTGTATCTGTGGTTTGCTTGTTGGCTTGACATTCAATTATTGTCCTAGTTCTGTTTGTTGTATTATTTCCATATCTGGGTCATCTTGTATATGTGATTTGGATATTGGGTTGGCGTTGAACTTTAGGAATTTGATGGCTTTGGGATAAATGTTTAATTCAGTTATGCTAGTTTGATCGTATTATATTATGTGTACAACTGATTTTCGTCCGTTGTGTTTTTATTCGATTTCTCTATATGGGTACCCTTGTAACTGTGGTTCGCTTGTTGGTTTGACATCAAACTTAATTTTTGTCGTAGTTCTGTTTTTTGTTTTATTTCTATATTTGGGTCATTTTACATCTGTGATTTGCTTATTGGGTTGGCGTTGAACTTTAGGAATGAGATGGCTTAGGGCTAAATGGCTCGTTCAGTCATGCTAGTTTGATCGATTTATAGTATGTGTACAACTGATTTTTAGTCCTAGTTGTGTTATTTGCTCCATTTCTCTGTATGGGTACCCTTTTGTCTGTGGTGTGCTTGTTGGGTTGACGTCGAACTTTAATTTTTGTTCTACTTCTATTCTTTGCTCGATTTTTCTATCTCTGTCATCTTGTATTTATGCTTGCTTACTGGGTTGACCCCAAACATTAACATTTTCATCCTAGTTCTGCTCTTTGCCCTATTTCTCTATCTGGGTCCTCTTGTATCTGTGTTTGCTTATTGGGTTGTCACCACACATTAAAAATTTATTCCTAGTTCTGCTCTTTTCTCGGTTTCTCTACCTGTGTCATCTTGTATCTGTGCTGTGCTTATTGGGTTGGCATCCAACTTGAGATATTTGATGGTTTACGGTTAGATGTCTTGTTCGTTATGCTATTTTGATCAATTTGTAGATCTGACTTTGGTGATTGAATAAGAAAAGCTGTGTGCTTCTTCCAGTTTGTTTGGAAGGTTGTTACCTATGCTGTTATATTATGTTGTTAGTTTAACTATAATGCTTGTTTTGATTTTTACTTAAGTTTTATTAGATTGTATCGTTAACTTTGTCGATAGGTAACAAAGAAAAGTTCCATTTTGTGTAAAAAGTGATTTGGTGTGATTGGTCATTATCTTCTTCTTTTTTTTTTTTAAATTTTGTTTTTACTTGTTATTTAATAATCCTAATTTATCGTTTACCTTACCTTTTTATAGTAGCTCTACCCCGTATTTAAGTGCACCATTACGTAACAACATAAACTCCGTAACAACATAAACTCAGTAATTTTTAAATTTCAATATCACATTTTTGTTGTGTTTACCACTTCAATAATATAATTTAGTATTGACTTGGATTCTGGCTTGTAGTAAGATTGAATCTGGTATTGGGTTGTCTGTTCCTTATATTGCTAAAGAATCAAAGGAGCATCACTAAGGGGTCGTTTGGTTGGGCATAAGTTATCCCATGATTATATATCCCGGGATAAGTTATCCCACCATGTATGTGGGATAAGTTATCCCATCATTATGGTATAAATGGTGGGATAAGTTATCCCAAACTTGGCAACCAAACAAGACACCAAAATTTTATCCCTAGACTATTTATTTTTATCCCTCACACCAAACAACCCCTAAGAGTTTAATTATCTTGCAGTTCATTACTTCATTTCGTGCTTTTTCCCCAGTTTTTAAGACGTATTGTGATTTTTGATCTCCTTGTAAAATAGATGCATTCACAGAGTTGGTAGATAGAACAGCAATTGTAGTAATTTAACTGGCGCAATAGAAGAAAACTAGGACTCCTTTTCTTGAACCTTATGACTATATTCCTTCTTTTGTAACTATAAATATTATCAGGTCGAAATTTATGAGAAGATACATTAATTTCAGGTAAGGTGACTAGAAGAAAAAAATGGAGAAGTCATGCTCATTGTTGATACATTTTGATAAGGGTACGCCTGCTCTTGCCAATGAGATCAAAGAAGCACTTGAAGGAAATGATATCCCCGCCAAGGTTGAAGCTATGAAGAAAGCCGTAATGCTTTTATTGAATGGAGAAACCCTACCTCAGCTCTTCATCACTATTATTAGATATGTCTTGCCTTCTGAGGATCACACAATTCAAAAACTGTTACTTTTGTATTTGGAGATCATTGAGAAGACAGATTCTAAGGGGCGTGTGCTGCCCGAGATGATCCTAATCTGCCAGAACTTGAGGAATAATTTGCAGCATCCCAATGAGTACCTTCGTGGAGCTACGTTGAGATTTCTTTGCAGGCTGAATGAGGTTGATATAATTGAACCTCTAATTCCATCAATTATGAACAACTTGGAGCACCGACATCCATTTGTGAGGAGGAATGCAATTCTTGCTGTGATGTCTGTTTACAAGCTCCCACATGGTGAGCAGCTCCTGGTAGACGCACCAGAGAAGATTGAGAATCTCCTAACCACTGAGCAGGATCCATCGGCTAAGAGGAATGCATTTCTTATGCTCTTCCAATGTGCTCAGGAGCGTGCCATCAATTACCTCTTGACTCATGTTGATAGAGTCTCTGATTGGGGCGAGTTA</genome_strand>
        <mrna_strand>CTGGATCTTGCAGATCTGAGTATAGACCAAATTTTTTGTTCCTACAACCGAATTTCTCCTCTGAAGATTCAATCTGATTCAACATTTGCTGGATTTGATCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGTGACTAGAAGAAAAAAATGGAGAAGTCATGCTCATTGTTGATACATTTTGATAAGGGTACGCCTGCTCTTGCCAATGAGATCAAAGAAGCACTTGAAGGAAATGATATCCCC-CCAAGGTTGAAGCTATGAAGAAAGCCGTAATGCTTTTATTGAATGGAGAAACCCTACCTCAGCTCTTCATCACTATTATTAGATATGTCTTGCCTTCTGAGGATCACACAATTCAAAAACTGTTACTTTTGTATTTGGAGATCATTGAGAAGACAGATTCTAAGGGGCGTGTGCTGCCCGAGATGATCCTAATCTGCCAGAACTTGAGGAATAATTTGCAGCATCCCAATGAGTACCTTCGTGGAGCTACGTTGAGATTTCTTTGCAGGCTGAATGAGGTTGATATAATTGAACCTCTAATTCCATCAATTATGAACAACTTGGAGCACCGACNTCCATTTGTGAGGAGGAATGCAATTCTTGCTGTGATGTCTGTTTACAAGCTCCCACATGGTGAGCAGCTCCTGGTAGACGCACCANANAANANTGANAATCTCCTAACCACTGAGCAGNANCCATCGGCTAANAGGAATGCATTTCTTATGCTCTTCCANTGTGCTCNGNAGCGTGCCATCAATTACCTCTNGACTCANGTTGATAGAGTCTCTGANNGGGGCGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572669" ref_strand="+" ref_description="SGN-U572669 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|147845891|emb|CAN82167.1| (e_value=0) hypothetical; (*ATH) AT4G31480.1 (e_value=0)  Symbol: None | coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative, similar to Coatomer beta subunit (Beta-coat protein) (Beta-COP) from {Rattus norvegicus} SP:P23514, {Mus musculus} SP:Q9JIF7, {Homo sapiens} SP:P53618... ; (*SWP) sp|Q53PC7|COPB1_ORYSJ (e_value=0) Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000; ">
      <seq>cagtttctgaggaaagtgaagctgctgattcttcaaaaaagactcagcaagcaaactccattactactttgtcatctagaagaccagctgtacttgctgatgggacatatgctactcaaagtgctgcatctgaaactgctttctctcccccgacagttgttcaaggatctttaaccactggaaacttgagatccctccttctcactggtgatttcttcttgggagcagttgttgcttgtacactgactaagctcattctgaggctggaagaagttcagccatcaaaacttgaattgaacaaagctacaacaaatgcattactgatcatggtctcaatgatacagctagggcagtctcatgctcttcctcacccaattgacaatgattctcatgacagaatagttctttgcataagattgctctgtaatacgggcaatgaggttaggaagatctggttgagctcttgtcgcgagagttttgttaatatgctttctgataaacaactacgagagacagaggagatcaaagcaaaggcacaaatttctcgctcccagccagatgacctcattgatttctaccatttgaagagtaggaagggaatgagccaactggagttggaagatgaagtccaggatgatttgaaacgtgccactggagaattcgtcaaggatgagaatgatgctaataagctaagcagggtactgcagcttacaggatttagtgatcctgtttatgctgaagcatatgtaacagttcatcattatgacattgtcctagatgttaccgtgataaatcgaaccaaagagacacttcagaatttgtgtttggaactggcaaccatgggtgatcttaagctcgttgagcgtccacagaattatactatagctcctgagtcaagcaagcagataaaagctaatatcaaggtgtcttccaccgagactggagtgatttttggtaacattgtctatgagtcttcaaatgtgctcgagcgaactgttgttgtgctcaatgatatccatattgacatcatggattacatctctcctgctgtttgcagtgaggctgcttttagaactatgtgggctgaatttgagtgggaaaacaaggttgctgtcaacactgtcattcaagatgaaaaaggatttcttgaccatattatcaaatcaaccaacatgaagtgtctgactgcaccatctgctctggaagatgaatgtggattccttgctgctaatctttatgcaaagagtgtgtttggagaggatgctttggtgaatttgagcattgaaaagcaatcagatggtaagctgagtggttatattagaataagaagcaaaacacaaggaattgctcttagcttgggagacaaaataacactcaagcagaagggaggcaattgatcttattgtgttgttatggtcctctcctagacagcaaaggtcattaaaacatgaaactgagactccttcacatctcccatttgtagcttggaggagtgctggggttattgagttaaaaacctgtagaaattgtattactgcacttacttttagattcggatccgcgaaattcgagcattttactcttctttgaggacattttttggtagagaaaattggaaagagagtagtgctgctttatctctgtgttgtaagttaactgaatttggtacaagtcactctttgcttgttactttctgttaacttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="57938" stop="63665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58238" g_stop="58833" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60658" g_stop="61167" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="1106" r_length="510" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61168" i_stop="61660" i_length="493">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61661" g_stop="61746" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1107" r_stop="1192" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61747" i_stop="62445" i_length="699">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62446" g_stop="62689" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1193" r_stop="1436" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62690" i_stop="63096" i_length="407">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63097" g_stop="63366" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1437" r_stop="1706" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U572669" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58238" e_stop="58833"/>
          <exon e_start="60658" e_stop="61167"/>
          <exon e_start="61661" e_stop="61746"/>
          <exon e_start="62446" e_stop="62689"/>
          <exon e_start="63097" e_stop="63366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTCTGAGGAAAGTGAAGCTGCTGATTCTTCAAAAAAGACTCAGCAAGCAAACTCCATTACTACTTTGTCATCTAGAAGACCAGCTGTACTTGCTGATGGGACATATGCTACTCAAAGTGCTGCATCTGAAACTGCTTTCTCTCCCCCGACAGTTGTTCAAGGATCTTTAACCACTGGAAACTTGAGATCCCTCCTTCTCACTGGTGATTTCTTCTTGGGAGCAGTTGTTGCTTGTACACTGACTAAGCTCATTCTGAGGCTGGAAGAAGTTCAGCCATCAAAACTTGAATTGAACAAAGCTACAACAAATGCATTACTGATCATGGTCTCAATGATACAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAGGTTAGAAACTTCTATCTGAAACATGGCGTGTTTGGACGATGCAATAGGTTCTCTTTTCTAATTCCTGCTTATACTTCACTTGCTATCTACTGAAGATGTTAATTAGTAAACCTTTTGTTAACTGACCAGCATAACAGACAGTCTGATCTTGTATCCATACTCCTTAATCTGTCTTCGTTCAGGCCCTACATGGGTCATTCTCATCTTGTCTTATTTTTCCACCTTGCCGAACCACATACTCATCTGGGATTTTGGGTGTTTATTTCTGCCCGTTGAGGAAAAGAAAAGTAGTTTATTTCTGGTGTACCTCTGTGTTTTCATGGCTTAGTTTTTGTCTTTTATCTCCATGATAGTATTTCAATCAAATAATTAGAGTTATACATGTGTTTTGGTGAGTTTCTTTAAGCATGGGGAGTAAAAAATTGATGAAGTTTCCTTTAAAAAAGAATGTATTAGTTGTGATGCGTCTTTGTAATTTACCAGTAGAGTAAATTGGAAATCTTTCCCTAATTTATATGTGGTGCAAAAAATTGGACTTTCTAATACTGGCGGCACTTTCTGGAGTAAAACTTAACTTGCCTTGCACCTGACCTGTCTATACAAAGTAAGAAAAATTGAGCAATTACGTGAACTCTAATTTTGAGATTTTTGTTTTAGATTATGCTAACCGACTACATTTGGCATTTCTTTTAAAATTATTCTGGAAAACAGTTTTCTTGAGTCAAGGGTCTATCAGAAACAACCTCTTTACCCCTCAAAGACCGGGTTAAGGGTTGTGTAAACCCTCCCTCCCCCAGACCCTACTTGTAGCACTATACTGTGTATGTTGTTGTATTTGACTACATTTCACTTTAAATACACAACTGTAAGATCTCATTGGCAATTGATACTGTATCTTTTTCTTTCTTTCTAGCACCATTAAAATGGAGAAAAGTTTCACAGCGAAACAGATTCCTTTTGTTGTTTCTTGAGTCTTATTCAATTTAAAATGAATAGTTTTCTTTTCCAGCTAATTAAATAATATTTTCATTCTATATAACAAATAGAATAGGAAATAAATGTCACAAATATGGTTGTGTAGACAAATAACTCCAACTTCAAAAAATATGGTTGTAGAGACAAATAACTCTTCTTACTATATTACAGACTTAAATCTGTCCACGTATTAGAGGTTTGGGGTGTTTTTGGTGCCAATTGCGTTTTGAATCTCCAAAAATTGTGAATGAATGAAAGTGGACTTTGAGCCCCAAAAAGGTTGATAATTAGGTCATGTGGATCGTGGAAAGCACAAGCTTTTCCATCAACAACGTTGGTATTAAGACTTGAAGAGAAGGTCGTATGGTTGCACATGTTCCTAAGGTTATTGTATTATATGTGCAGCTAAAACGTGTAGGTCAAAATTACTTTTTGTTGCTATAGAGAAGGGGTAGAATACAATATGTAGGCTCTTTATCTATTAATATAACGAAGACATAATTTGCTCTGGTCCCCACTATGCAACCCCTTTCACCTTCTCTATTTGTCCTCCCTCTAAAGAATATTTGAGTTGTAACTAATTACACCTTATTCCTCTATCCCAAACAAGTTACAGTTGGCTATATATGAATCTTCACTATCCATGTCCTGCCTTAATTGAAATGAACCTATGTTACTTTAAGGCTCAAGTTTTTTTTTTTTTTCGTTCTCCTTATTTAACTAATCTGTGCAGTAATTTCTAAATCATGCGAGGGTTTGTCTAGTTAATTCATTTTTTTCTCCCTTGGTGCTTAGAATCAAAATGCAATAGTTGCTTCTCCATGTCCTAACTAAATATATGTATGCCAGGGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAGGTAGAATGCCATGCTTTATTATTTCACAATCATTTGATAGTTCTTTTTTTGCTGCTTCTAATTCTCTATGCCTTTTGATGTCATAAAAGATCCGTTCCTTTGAGTTGGAGAATTGAGACAAAGTCGTTCTCTTATGTTTTGATGAATCATGTCATATGATTTCTGGGTTTTTTTGGGTGCCTTCAAAATGGGTTACGAGTGGGTTTACCAATTCTTTTTCGGAAATTAGTGGTCCGAAGGTGATAGTTCTCTTGCTAGTATGTTTCTTTGATGTGTGTTCTTGAATCTTGATCTTTTAATGGAGTTGTTTGATTTAACAGGTACATTTGTGATTTGATGCTATTAGACTCTCGTGTGGACTTTTCTTTGTCCTACTGTGAAAATAACAGAGCAACAGACACATGAATTATAAATTTATGCACTGATGAATAGTCCAGACTGAAGTGGTCTGATCAAAACCATGAGCTCCTCAGGCTAATATTTTACTTTGCAGGTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACCGTGAGTTCTCTGGTCACTCGCTACGTGCTATATTATGGTTATTGCTGTTTGATCATTTCTTTTTAATTTGCATTTTCTTATTTCTTATTTTGTTTTTATTGATATCAAATATAATTTACATTGTAGAGTGTGTATATTCTCCATAGACAGCATTTGTTTAACTGTATGCAATGCTGCGAACTGTTGGAACAAGCCTCATTTTTTTACTCCCGTAGAGTTTTTAACTTCATCTACCAGAATCATATTGTGCTGACCAAGAAATGAGATTCTTTTTTCCAAATTAGATTTGTCTAGTACTCTTCTAATTGAGGGTTACTACTTAGTTTCTTTTCTATCATCTCGAGATCAGTTTCTTTATTGTAACAGTTTTTCATCTACACTTGTTGAGTGTATTTTAATTGCACCAAATGTAGAAGATATATCAAGTAGATGTTTTGTTTTTCACTTGCTGCATATGTGAGGCCGTATTCAGTATACATCTCTGGATGTGTGTGTGCACTTGTGTAAATGTGTGTCGAAATATATATATTCAAGTTCCTTGTAGAACGTAGAAGTTACCTGTGAGTTGATTTATCAAGAGAAAGAAGTACCGTGTTACTTGTTTGTTGCTTTAAGTCATTTAAGTCCTGTTTCCTTATGGTACATGGCTGCTGATCAATGTATAACTTTTACGGTATTTGCTTTCGTACATAATTCCAGATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAGGTACCCTACTTCATCTATAAAGACATTTTACAACTTCCTTGTCTTTGCCTCATATGTTTCCATTGAATCGTTAGTTTAGGTGGGCTTTTCTTTTCTGCAGTTTCTGGAAAACCACACGGAAACGTATACAAAATACCTATATATTAGAAGTGTGTTTTAGATATCACTCCCTGGGTACCCTTTTCTTTTAACTTCTGAACGTAGTAACTTTACTCCCTGGTACCATTTTAATGTGACACAGATAAGAGTTGTTAATTGTATCAGTCTCAGTTGAAGTAATTGGTTAACGATATGCTGAACAAGTTTGTTCGACTAGGAACTCATCGCATTGTTTACTAACATAGGTGTCGTTCTCTAGATGGATAGCATCTTTGAGTTACCCTCTAATCGGTTTTCACTATTTGCAGGTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAAAGAGAGTAGTGCTGCTTTATCTCTGTGTTGTAAGTTAACTGAATTTGGTACAAGTCACTCTTTGCTTGTTACTTTCTGTTAACTTCCA</genome_strand>
        <mrna_strand>CAGTTTCTGAGGAAAGTGAAGCTGCTGATTCTTCAAAAAAGACTCAGCAAGCAAACTCCATTACTACTTTGTCATCTAGAAGACCAGCTGTACTTGCTGATGGGACATATGCTACTCAAAGTGCTGCATCTGAAACTGCTTTCTCTCCCCCGACAGTTGTTCAAGGATCTTTAACCACTGGAAACTTGAGATCCCTCCTTCTCACTGGTGATTTCTTCTTGGGAGCAGTTGTTGCTTGTACACTGACTAAGCTCATTCTGAGGCTGGAAGAAGTTCAGCCATCAAAACTTGAATTGAACAAAGCTACAACAAATGCATTACTGATCATGGTCTCAATGATACAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAAAGAGAGTAGTGCTGCTTTATCTCTGTGTTGTAAGTTAACTGAATTTGGTACAAGTCACTCTTTGCTTGTTACTTTCTGTTAACTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572667" ref_strand="+" ref_description="SGN-U572667 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|125576383|gb|EAZ17605.1| (e_value=2e-25) hypothetical; (*ATH) AT4G31490.1 (e_value=2e-27)  Symbol: None | coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative, similar to Coatomer beta subunit (Beta-coat protein) (Beta-COP) from {Rattus norvegicus} SP:P23514, {Mus musculus} SP:Q9JIF7, {Homo sapiens} SP:P53618... ; (*SWP) sp|Q53PC7|COPB1_ORYSJ (e_value=1e-26) Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000; ">
      <seq>caaatcacccaccatgaagtgtctgactgccccttctgctttggaagaggaatggggattccttgctgctaatctttatgcaaagagtgtgtttggagaggatgctttggtgaatttgagcattgaaaagcaatcagatggtaagctgaggggttatattggaataggaggcaaaccccagggaattgtttttagcttgggagacaaaataacactcaagcagagggggggcaatggatcttatggggttgttagggtcctctccaagacagcaagggtctttaaaacatgaaagtgggactccttcacatttcccatttgtagcttgggggagtgcgggggttattgagttaaaaacctgtagaaattgtattactgcacttacttttagattcggatccgcgaaattcgagcattttactcttctttgaggacattttttggtagagaaaattggaaagagagtagggctgctttatctctgggttaaaagttaactgaatttggtacaagccactctttgcttgttactttctgttaacttccaattcctgatttccatttttttttttttgtaaacaaaggtcaactcagtttccattgccatattatatattgaaattttaggctttcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="61414" stop="63754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61714" g_stop="61746" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61747" i_stop="62445" i_length="699">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.868" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62446" g_stop="62689" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="277" r_length="244" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62690" i_stop="63096" i_length="407">
            <donor d_prob="0.962" d_score="0.86"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63097" g_stop="63454" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="637" r_length="360" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U572667" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61714" e_stop="61746"/>
          <exon e_start="62446" e_stop="62689"/>
          <exon e_start="63097" e_stop="63454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAACCAACATGAAGTGTCTGACTGCACCGTGAGTTCTCTGGTCACTCGCTACGTGCTATATTATGGTTATTGCTGTTTGATCATTTCTTTTTAATTTGCATTTTCTTATTTCTTATTTTGTTTTTATTGATATCAAATATAATTTACATTGTAGAGTGTGTATATTCTCCATAGACAGCATTTGTTTAACTGTATGCAATGCTGCGAACTGTTGGAACAAGCCTCATTTTTTTACTCCCGTAGAGTTTTTAACTTCATCTACCAGAATCATATTGTGCTGACCAAGAAATGAGATTCTTTTTTCCAAATTAGATTTGTCTAGTACTCTTCTAATTGAGGGTTACTACTTAGTTTCTTTTCTATCATCTCGAGATCAGTTTCTTTATTGTAACAGTTTTTCATCTACACTTGTTGAGTGTATTTTAATTGCACCAAATGTAGAAGATATATCAAGTAGATGTTTTGTTTTTCACTTGCTGCATATGTGAGGCCGTATTCAGTATACATCTCTGGATGTGTGTGTGCACTTGTGTAAATGTGTGTCGAAATATATATATTCAAGTTCCTTGTAGAACGTAGAAGTTACCTGTGAGTTGATTTATCAAGAGAAAGAAGTACCGTGTTACTTGTTTGTTGCTTTAAGTCATTTAAGTCCTGTTTCCTTATGGTACATGGCTGCTGATCAATGTATAACTTTTACGGTATTTGCTTTCGTACATAATTCCAGATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAGGTACCCTACTTCATCTATAAAGACATTTTACAACTTCCTTGTCTTTGCCTCATATGTTTCCATTGAATCGTTAGTTTAGGTGGGCTTTTCTTTTCTGCAGTTTCTGGAAAACCACACGGAAACGTATACAAAATACCTATATATTAGAAGTGTGTTTTAGATATCACTCCCTGGGTACCCTTTTCTTTTAACTTCTGAACGTAGTAACTTTACTCCCTGGTACCATTTTAATGTGACACAGATAAGAGTTGTTAATTGTATCAGTCTCAGTTGAAGTAATTGGTTAACGATATGCTGAACAAGTTTGTTCGACTAGGAACTCATCGCATTGTTTACTAACATAGGTGTCGTTCTCTAGATGGATAGCATCTTTGAGTTACCCTCTAATCGGTTTTCACTATTTGCAGGTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAAAGAGAGTAGTGCTGCTTTATCTCTGTGTTGTAAGTTAACTGAATTTGGTACAAGTCACTCTTTGCTTGTTACTTTCTGTTAACTTCCAATTCCTGATTTCCA--TTTTTTTTTTTGTAAACAAAGGTCAACTCAGTTTCCATTGCCATATTATATATTGAAATTTTAGGCTTATTTCC</genome_strand>
        <mrna_strand>CAAATCACCCACCATGAAGTGTCTGACTGCCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTTTGGAAGAGGAATGGGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGGGGTTATATTGGAATAGGAGGCAAACCCCAGGGAATTGTTTTTAGCTTGGGAGACAAAATAACACTCAAGCAGAGGGGGGGCAATGGATCTTATGGGGTTGTTAGGGTCCTCTCCAAGACAGCAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTAAAACATGAAAGTGGGACTCCTTCACATTTCCCATTTGTAGCTTGGGGGAGTGCGGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAAAGAGAGTAGGGCTGCTTTATCTCTGGGTTAAAAGTTAACTGAATTTGGTACAAGCCACTCTTTGCTTGTTACTTTCTGTTAACTTCCAATTCCTGATTTCCATTTTTTTTTTTTTGTAAACAAAGGTCAACTCAGTTTCCATTGCCATATTATATATTGAAATTTTAGGCTTTCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584179" ref_strand="+" ref_description="SGN-U584179 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|118481137|gb|ABK92521.1| (e_value=4e-11) unknown; (*ATH) AT5G27010.1 (e_value=4e-12) | Symbol: None | expressed protein | chr5:9503318-9507572 REVERSE | Aliases: F2P16.15, F2P16_15; ">
      <seq>ggcgattggcggccaatcggccgaatttacctccttccttgttttttcctatttgataggagcaacatgctgttaaatcagatattggaagtgatgggatcatttatcaggggaaatgtgcctcattcgaaaggtgccttggcaaaggatcattcaagcagaattctttctgtagtctctgttctcttacttgtgcttggagatattaaaatgcagaaacttcttctatcatgcaagacacagattagaaatatactagaaagcatgcacagactcgagtcttctgaggatattacaatgacaattgaagaaagacataaaatccgaagtgcttatgacatactgactgcagccgttagcacattggaatacgactaacctggaatagtgtatctgagtgatacaatttgctgtacaagatgaatgtttcaatcccaatgatcattcattgacattctgcagactcaatgtagttcgtggtaaagaaagaggatcgagaatgcaatcgtcatctaattatctttgatgacaccagttgagcgggtaagtaggacttctgttgagcctcatcgatcacagtaacaaaaacgtagagtttctgctcaacctcctcgatcagtgcgatggttacattcaattatgaccattgaattgaaattgtaatggcctatggttaaaacattcagttacaaccattgaaatgacattataattattgtctgaggtatatatattcttattgcatatttaatgtatctttatatgaatttagaatgacatgggaaaccttatatttgactctggttgtaagttggactcttatacttacaactttgtcaatgaaacacaatatactaaactagttcctcatccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="73636" stop="71637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73336" g_stop="73084" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="279" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72698" g_stop="72580" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="398" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72579" i_stop="72412" i_length="168">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.466" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72411" g_stop="71936" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="874" r_length="476" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U584179" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73336" e_stop="73084"/>
          <exon e_start="72698" e_stop="72580"/>
          <exon e_start="72411" e_stop="71936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAGGTATGACATCAAACTCTGACCTCAACCTTCCGATTTCTCAAGTTACCTTGCATATAATACGATGTTCTAATTTGTCAAGAGTCGTGAAATTATAAATATTTGTTGGCATGCGTAGTAATTTCAAGTGCTGCTACCTTGTCCCTTCTGAACCGTATAATTTGATAAATGAGTGAGTTTTAGAAAGGAAGTCATTTATTATGAACTTTCAAGCTTTCAAGAGTAAGAAGTCTCTCTTTCAGGTCTAATATGAAGAAAGGATCATTTACTTTATGTATTTGTGCAATGAAACTTTCTAAGAACAAGTTCCATTAAGATTGTTGAACGAAACTGTGTATTGGGCTTCATTTCGACGTGCATTTACATGTAATCGATTTTGTGTTTGCAGTCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAGGTAAGTCTGCTTATCTGCTACGTAGCGTGTGTGCTTGTACAGTCTGTTTTGTTCTTGAGAAGGCCGTTAACAGCATAGATTACGCGAGTCTTAAGCATGTTTGGTGCAATCGTTATAATGCTTTTCCACGTCTGACTTATAATTTTGGGATGTTTGTGCTTTATGAAGTGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGACATGGGAAACCTTATATTTGACTCTGGTTGTAAGTTGGACTCTTATACTTACAACTTTGTCAATGAAACACAATATACTAAACTAGTTCCTCATCCT</genome_strand>
        <mrna_strand>TTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG.................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAG........................................................................................................................................................................TGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGACATGGGAAACCTTATATTTGACTCTGGTTGTAAGTTGGACTCTTATACTTACAACTTTGTCAATGAAACACAATATACTAAACTAGTTCCTCATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584180" ref_strand="+" ref_description="SGN-U584180 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157346126|emb|CAO15823.1| (e_value=3e-130) unnamed; (*ATH) AT5G06350.1 (e_value=4e-107) | Symbol: None | expressed protein | chr5:1938782-1944358 FORWARD | Aliases: MHF15.13, MHF15_13; ">
      <seq>gctggcacctgcttacaagaaaaagaaccttagtatatcggaccaaagtatatcagcagtgactttaaaaaagatatgggatgagtttcctttaagttcgaatcattgcttgtcagagaaggacggtgaccgatatttcatgctgaatattgtaattacagaaatatttttgcatctaagttatgggtccaaattatcacctgggttgctggaaagatttctggagttcattgagagttctctatctgaaaagattcacgatggcagagaggctggtaaagtacatcatgagaagcatttaatttcactggttgcttttatcccaaaactcattatgcaagtgtctgttgcttggaagtcacgtatccttcaggcttttacgaaagtttttgagaattgcagtgcagagtcctcaatgaaattggcttgcctttctgttgttgaagaaatgctacttcctgagcagaattgcctttatctggatcccaaagatcttgaaatattaaatcatagtacatggataggggagcttccaaagctgttagtcctcttaggtgataaacacccattacattcaaaggctgtgttacgtcttcagcttcgtgttggacaaactgctaatttaagcatgacaccggcaaaagaatatgaaaatatgcagtactttataagagctttttactgcacctactccaatgaaactgtaagctatggtccattcatgaggcttcctagagatattcaggagctctctgtatgctgtctgtattacttccctttcttggacaaggtgatactcgagtctttagcctcatgctgcatatgtcacgagttggaaccatttatccttttccgagtcatggaagttctacactcagcctacaaggctggccatatccagattgcagattacattagcttcttcatcacattgctttcacgctttcaagtttatcctgagaaaattgatcctatggagaagcacgaagggaagtcaaatcgtggaaccttcaaagcagttgttagggctgtttgttcttggttgtcgcagataggagatgatgtgctcgttttgcagatgctggagaaaattgttcttgatgagatatctcagaaacaaccagtagacaacatttatggttttataagattgcttatcacactagactcaaaacctactcgactttctgaagaaactatcaatagactaagcgaggtccttccggagtacttcttagatgttgtgaataacattccagaggaagatgacgagtctactaaatctttgattcgacagacaagggtttattacctccttccttgttttttcctatttgataggagcaacatgctgttaaatcagatattggaagtgatgggatcatttatcaggggaaatgtgcctcattcgaaaggtgccttggcaaaggatcattcaagcagaattctttctgtagtctctgttctcttacttgtgcttggagatattaaaatgcagaaactttttttatcatgcaagacacagattagaaatatactagaaagcatgcacagactcgagttttttgaggatattacaatgacaattgaagaaagacataaaatccgaagtgcttatgacatactgactgcagccgttagcacattggaatacgactaacctggaatagtgtatttgagactcaatgtagttcgtggtaaagaaagaggatcgagaatgcaatcgtcatctaattatctttgatgacaccagttgagcgggtaagtaggacttttgttgagcctcatcgatcacagtaacaaaaacgtagagtttttgctcaacctcctcgatcagtgcgatggttacattcaattatgaccattgaattgaaattgtaatggcctatggttaaaacattcagttacaaccattgaaatgacattataattattgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="84108" stop="71788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83809" g_stop="83689" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83688" i_stop="82944" i_length="745">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82943" g_stop="82812" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="253" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82811" i_stop="79467" i_length="3345">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79466" g_stop="79347" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="373" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79346" i_stop="79031" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79030" g_stop="78944" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="460" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78943" i_stop="78667" i_length="277">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78666" g_stop="78547" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="580" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78546" i_stop="78413" i_length="134">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78412" g_stop="78295" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="698" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78189" g_stop="78064" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="824" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="78063" i_stop="75189" i_length="2875">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="75188" g_stop="75054" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="959" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="75053" i_stop="74116" i_length="938">
            <donor d_prob="0.532" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74115" g_stop="73967" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="960" r_stop="1108" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="73966" i_stop="73862" i_length="105">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="73861" g_stop="73721" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1109" r_stop="1249" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="73720" i_stop="73396" i_length="325">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="73395" g_stop="73084" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1250" r_stop="1561" r_length="312" r_score="0.994"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="72698" g_stop="72580" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1562" r_stop="1680" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="72579" i_stop="72348" i_length="232">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="72347" g_stop="72088" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1681" r_stop="1940" r_length="260" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U584180" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1940</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83809" e_stop="83689"/>
          <exon e_start="82943" e_stop="82812"/>
          <exon e_start="79466" e_stop="79347"/>
          <exon e_start="79030" e_stop="78944"/>
          <exon e_start="78666" e_stop="78547"/>
          <exon e_start="78412" e_stop="78295"/>
          <exon e_start="78189" e_stop="78064"/>
          <exon e_start="75188" e_stop="75054"/>
          <exon e_start="74115" e_stop="73967"/>
          <exon e_start="73861" e_stop="73721"/>
          <exon e_start="73395" e_stop="73084"/>
          <exon e_start="72698" e_stop="72580"/>
          <exon e_start="72347" e_stop="72088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGCACCTGCTTACAAGAAAAAGAACCTTAGTATATCGGACCAAAGTATATCAGCAGTGACTTTAAAAAAGATATGGGATGAGTTTCCTTTAAGTTCGAATCATTGCTTGTCAGAGAAGGTACAGTTTCCTTATTGATATTATTTTTCTTCATCCATGTCACTCTCTATTTATTTTTGGAGTTTGTTTTCTTGTTTCCTTAGCTTAACTTTTCTTCCTCCCCACCTCCCCGCTTCCCCTAACTTGGAAACCAGGGAAGAGAAGACACGGGTAGGGAAATGTACTCTTTTCTTTCAGTTGTTAGTTTCCAAGAGAAAGACGAAAGAAAGAGGAAAGTAATGGTTTTCTTGTGGGACCACCTATATTTTAATATTGACGTCTTTAAATATAGGTCTTGAATGCTTGAACTTGTTAAACACTCCAGTCTAAGTTAACTGGATATCTCTGTTCAAACTGTTACTACACTTGGTAATTAGCATGTTAATTTCATGCCACATGCATTTAAAGTTTGAGCTGTGGTTCAAACATTCTTAAACTAGTTTTAGTCTTCAAAGAAACAATACTGTTTTATCAGTGAATAAAGGTTTGGAACAAGAATGCTAGTCCTTCCTATCTCGCATCTCAAAAATATTGTCTTCAATCTTGACAATCATTCCAAACAAGACATCTTTGCTAGAGTAAAGTAGACCATGATTTACCTTGTTGACATCCTTACAAATTTATTGTTAAAATGCTCATACGTTATTGGGTCATGGATGGAATAACTTCTCTTTTTCTTTCTGTTTTCCTTTTCCTTTTGTCCTTTTTCATTGAAAGTAATTTTTCTCTAAATTTTTCTATCTTATTTTTTTTAAAAATATTGCAGGACGGTGACCGATATTTCATGCTGAATATTGTAATTACAGAAATATTTTTGCATCTAAGTTATGGGTCCAAATTATCACCTGGGTTGCTGGAAAGATTTCTGGAGTTCATTGAGAGTTCTCTATCTGAAAAGGTTTGTGATGCTGATTTTAATTTTTATGCCTATGAATGAGAAGTAAGCCCTTCATTTACTTAGTGTAGAGAAAAATAAACTTGGGAGTTAAATTATAGAGCTAAAGGACAATACTGTTGGTGTGGGGTTAATGTTTGATATATTCTGATCGATAATGGTGTTCTGGGATTCGTTTTGGATAGCTCATAGAATCCAGAGTCAGGGAATATGAGCAGGGATAAGAGAATCAAGACCGATATGTTACATAGCAAGAAGCCTACAATCTCCAGGAATCAATATGAATTTAGCATTAAAAGAACATTGGAAGCAAATAGACAATGAGAAAGTGACCAACTAGTGGGGATTACGATTTAGTTGTTGCTGTTGCACTTAAAATTAGGTTCAGGTAGGTCACGTGTGCGATTATTAATGGAACTGTAAATAGCAATTGAAAGCTCTGAACCTGTAAAAGTTTAAGAATGTTGCCGGTGAGAAGTGAAAAAGTAACTCTTTTTGATGACAAGAAGTGAAAAAGTAACTCAGGAATGAGAATGTCATTGCTGAACTTGCCAGCTAGTGTATGTTTCACCATGCCCCAAATATTTGGTCATCCTGTTTTAGGATGGTATTTAATCCACTTTGAAAGTGCGTGTTGGGGGGTTGGGGGGCAGGGGGGGGGGCAAGTCTGAGGGGATACTTATACCTTTTACGGCTTTACCGTAAGAAAAATCATCAGAGCAGCGAAGCCTTTTATCTTGTTGAGCATGGTGGCTCTTTTAATCCTCAATCTGTCATGACCCAAAAATGGACGTGATGGCACTCGTCTTATCCCACCAAGACAGGTAAGCCTAAAACTCAACTATTACAATAAAAATGCGGAAAATTTACTATCAACTTACATTATACCCCAAAACCTGGTTGTCACGTGTACAAGCGTCTAAAGTATTACAATCGGATCAAAAGAAAATATAAGTCTCATATGATATTGTTTCTAGAGTAGAACAAAATCATAAACAAGAGTAAGGAGGGATGCTGAGATGACCAACAACTACCTCACAAAATCTCCAGGAAGCCTCGGAAAAGAAGAGAATATATCATAAAGTCCGGGCTAGTAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCATACGGTACTCAGCAAGTAAACCTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCCAACCGAACCTCCACAACTACAACCTACATAAACATCAGCCCAACCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCCACAACAACACTTTACAAATTATATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTACATATCCTCAATAACACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAAAGGCAATCACTAGATCAGCAAAACACAATATCAAGTTCACTAATGATAAGTATGTGCAATGTAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCGCACAGTTCACAACAACCACAAAAACATGAAGTTACATAAACAATGATTCAACAAGCCTTCAACCCTTTCTCAACACAACACACATAAACAATTAATCACAATGCCTTTTGTTATCCCCATTCTTTTCATCATTAGAATTAATCAATGTGGACAAGTCAACCCATCACCAATCCCGTTACTCCCAACATATACCACAAGGACATACACACATTTCATACACTTAACAAGAGTTTAGAAATCCACTTGCCTCAAATAGTCGAACAATGACTCCAAAACTTGAGCCTTCCTTTTTTTTTTCTCCCTTTCTTTTCTTTTCTTACCTGCATATTTTTTTTTTTCCAGATCGTTCTCTTTCTGTTTCTTTAAGCCATGCGGCTTTTTAATAGCCTAGGGCACTTTGCCCCCTTTTTTTATTATTATTTTATGAATTTATTTAATTAATTCCTTTTCCATTTTTTTAAATTATATATGTATTAAAAGTAACACTTTCTAATAACCTATTTAAATATTTCAAACTTGGCCTATTATTATTAAAAATAAATAAATTACCCGACATTAATTAATTTAGTTAAATGACAATTAAAAATTATCAAAAATGATCTTTTCGGATCCGGGTCATTACACAATCTGAGGTGGCTCTTTGGTTCCTAAAAACTAATAGGAGTTGTTACACGTTTTAGTAAAGCTCTTTTTCTATATGCAGAGAACCATAAATAGAAATCTTGCTTCAAAGTTAACAAGTATAATTTTAGAGGTCTTTCAGGAAAAAACGCTACAAGCTTAGAAGCAATATCTATTAAGAACATGTTATATGGAACTAACTAAAGAATAAAATGTCCTCCAGTAGTCTTCAGTTAATGTCATTGTTTTCTCAATGTTCACTAGGTCTCTTCAGCATACCTGCCTGACTGGTGAAAAATTTTCTGCTCTCTATCTCCTTCGTTGCTTAAATCAGTGAGTTGGTTTTACTTGCCTTTCTCTCTCAAAAAAGGAAAAAGTAAAATGTTCACATTAAAGAATGATATTTTAGTCATAATTTTCTATCATTTTTGTAATGTAATCCTGGAAAATCCTGTCTGTAACCTTTCACAAAAGAAAAGAATAAGTAAATTAGCTTTGACAATATGCACAACACGCAGAGCTTGGGATAAAAATCTAAATGTTAGGCATCATTACTGCTTATTTATTCAGCTCAAAGCTAGATTCTTCGTAGTTGCTTGTTTTCCCCATAAATTTGCGGACCTTCTGAAAATTTCTTGCCTTGCCTTTTTCCCTGTTTCATCTCTCTAATTGTGTTTAAGTTGCCTCTCAAGATGAGTATCTGTGTCTTAGTCCTGATGGTATGCTATAATAGAATACCTATATCCTGCAGATTCACGATGGCAGAGAGGCTGGTAAAGTACATCATGAGAAGCATTTAATTTCACTGGTTGCTTTTATCCCAAAACTCATTATGCAAGTGTCTGTTGCTTGGAAGTCACGTATCCTTCAGGTTTGCACATCAAACTGAAAAACATTTACTTTTTAAGTCAAGTGTCTCTCTAGCAACTTCACCATTTTGTTTTCTTGATTTATGGTTCAGTCTTGTCAAGCAGTTCGAAGAACTATAGTTTTCAGTTTTAGTATCACATATTGGAGGAATTGATAAAAAAAGTTTGACGTTGATTATGTTGTTATTCCTTAATCTTTAGCATGCCCTCAAATTTTCAACTGTATTTAGACCCTAGGATTATGATCCCCTTTTGATTTGTTTTTCATGTGCTGTGTGCTGCCAGTGTTAAAAAGTAAAAATTTTCAATCGATTGCAGGCTTTTACGAAAGTTTTTGAGAATTGCAGTGCAGAGTCCTCAATGAAATTGGCTTGCCTTTCTGTTGTTGAAGAAATGCTACTTCCTGTAAGATTATCTATCAAAAGAACACATTTTTGATATTCCTAGCATATCTTTGGAGTGTTCACATTTTTAATTTTGTGATAACTCCCTTGTCTTAATCGAAGGGAAAACTCCTTTTGTCTGGTTGCTGTTATCTGTTTAATTGAAGAAAAAGTCTTGTATTAGCAGCCAGCTGGATGAGTAACTTGGATTATCTCTTGTTGCTAGACAATCAGCACAAGGTTGATGTCCCTATATGCTTTCTTCGTTTTATCTAATATCAAACTTTGGGTGATTGTAGGAGCAGAATTGCCTTTATCTGGATCCCAAAGATCTTGAAATATTAAATCATAGTACATGGATAGGGGAGCTTCCAAAGCTGTTAGTCCTCTTAGGTGATAAACACCCATTACATTCAAAGGTACCTACTTAGCTACCACCAGTACTGGTCTTTCTTAGGCTGAAATTTATGCTATATGCATATCCATTTGTTCTTCAAGTTTTCACATTGAGCTGAAATTCATCTTGTGCTTCTACAATAATTGCCTCTTGTAGGCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATGGTACTTAAGATTCATCTTCATTTAGTTCCAACTTTTATTTGTTTCATAATTCTGAATCTCACATTATTAATTCCTCACATGTTTTCCCTTTTTCTTGCACTGTAGAAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATATGTAAGTACAACTCCTTGCCATGAATGATTTTTATCTCCTTAACTAGATGGCGATATCAATGTCCTTTACAAAACTAATTGGTGTTCAAATTGTTAAATTGCTTGATGTGTGTGATCATTTGATCTAAAAGTTTGAGTTGTTAGGGAGAGCACACTTCCATTGCATTTTATAACTGTCTAATTGTATGCCCTTGCAGCTTCTTTCTCACTGTCAAATAGTCCTAGATAGATATACTTCCTGCCCCATACATGCTACCCATCATTTGTGCAGAGTGACCCCCCGACACTTGGGTCCTCTCCAAAAATTCTTCTTTGGTGAAATTCTACTTCATCACTGATGTTAAAATCCTTCAACAGCATATAACTAAACAATTTCGAGAACTCTGAAACTTGGGTCCTCTCCTACTCTTCCTCTGTTGTTATCTCTGCTACCGAGACATAGCAATTCTCTGCTCATTTGAAGCATCGTAGTTGGCTAAAAGATCCAACCACCACTGCTGCGGCAACTCAGCCTCTGCAATTACCAATAGAAATAACTCACCAAATCTTCATATTCCTAAACTCTTCGTAGTCATCCCCTTCTCCATGTGTTTTCAGTATATCAAATGCATAACCATTGCAGCGAATATCTGGACATGATACTAATCATCACTGACAGTACTAGATATTTCAATGTAAACAATGGAGGAATTGGAGGTCTAGAATTCTTCATTTAGGTGACAGTTCGTTGAGCTTTTTCCGGTGCTATTTGCCCTTGTATGGAAACGGATTCAACTGGAATATCTCGAAAACTAAGATTAAGATCAAACATCTCAAATTCCCACTACAATATGTCCAAAGTTGCACTAAAAATTTTAAATAATCAAATGGGAATTCAAATTCGATAATCAAAAAATCAAGAATGCAAGAGAACAATCAAATTATGGAGATTGAGTTAAGTATCAGGGATATAAGAAAATGGTAAGTGGGTTGGGGGTGGGAATAAAAAGAAATGTGGTAATATATACACTACACAAATACATTCCTTGTGTATGACACTTTCAAATGTATTATATATAGAGAAGGGACAATGATTAAATGGTAACTACATTGGTTTTGGGCAAAAAAGGATGGGTGGAAGGGGGAGACAGTTACAAACGTTAGAGCAAACAAAGAAAACATTGGGCCGATACTACCTGCCGGTAGGAGAATCTATTGGATCTCTACCAAGACCGTAGAGGCTTTGATACTATCTTGAACTGTTTGCGTGTCTGATCATTTCATCTAAAAGTTTTAATTGATTAGAGAGATCCCATTTATATACTTTATTATGTCTTTATACAAATGTTGCATGATTTGCCTAGTTATTCAGGGATTGGCGGGAATATTGTAATTTAAGAGGTCACCATCTTATATAAAAGTTTGTTGGAGGAATACACTTTAATTTATTCTTTTATATATTCAACATGCTCCCTTGACTGCGAACTTGGTTTTTTTATCGGCCAAGCACGTGGACTGAGGACCATCTTAAGAGGCCGCTTTGAGGTAATATTGAAGTGTGTGACTATCTCATCCAAAAGTTCATGTTGTTAAGAGAACATACTTCTATTTTTTAAAATATATCTTCAATAAGTGTTATAGCTGTTTTGCGAGTGAATCCCATTGATTAAACAAGAAAATAGAAAAGAGGCTAGGAAAATTGAAGGCGCAAAGCTAGGAGTAGCAAAATGGAGAGAAATTGATAGAGCAGAAGAAGGGCTGAATTACTGGTTGAGTAAAAATGTTTGCATGATTCTACCTGAAATATCTTTGAAACTCATATAAAGTTAACCACATGACTTGGATTTTAAGGGTACTTGCCAAATGAGTTACTTGACACTCACATGTCCTCCAATTCCATGGGGGTAAGGTGGGCCTATAGGTCTGGTTTCAACAATGTCACTAACAACTTGAATAAAACCATCTCTAGCATCAGTAAGGTTTTTGCTCCTAGACCAGTTGGACTACCATGAATGCATGACCTATTCTTTTTGAGTCACAGAGTGCAAGTGTGTCATAACATCAATTTTCATCACATTCCTGGAATGCTCAGAGCATGTTGGATTGAAATCATCAGGTCGCGATTCTTTTATCGTGAATAATTCTTTACCGTTTTTTCCACCCCTCTCAAATGGATTCTCAAGCAATTCCTTATTACTCTAACTAATTCGTCACAAATTAAAATATTTCCAATAAATTGTTGTCCCCAGTCAATGTTCTCATCACAAGTGTTGATAATATTATATTATATCATCATAACTATCATCTTCTTCCTCCAGCATATGCCCACTAATTTGTAGCTTTTATGGAGCATGTTTACTGCATTGAACCGGAGGATTATTGTCTCTCAGGTTTTCATTGATGTTCTCTTAAATATTATATTTGATGTTCATGGATCATGAGTGTCACCAATACGTCAGTGTTCCCTAAAAGTTCTTTTTTTGGGTGTGTATTTGTGTTTTTTTTTGTGTTTACAGTAAAATTGGACGAGATTTTGATAGAAGTTTGGCGTATGTTCTTTCAGGCCATGACGGTTCCAGTGAATGACCTTATTGTTTGAATTGGTTCTAAAATATTTTACATAAACGTTCTTCTCTTGTCTCAGGAGAAATGATATGACTTTATAGGTTCAGACATATTTTAAATAAATGTTCCTTCTCTTGTATCGGGAAGAAATGTTATATACTTAAATAAAGGGAAATTCTCTTTGGTTAGCATCTACATGTATTGTTACAAAAAATGATTCAGTCAAAATATATTAGAAGAAGCACAAATATATATCTTTGGTGCTTCTATCTTGTATGAGTATGAGCAGTCATTCTCACGATATTATTTCATCTATGGTTGTTTTAATGTAGGTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTGGTACCTTCTGAATCAGGCTTTTTGGTGTTCCTCAGTCCTTTTAAGAATTTGAAAACTATAGAAGTGTTATCAAAGGCGCGCTTTAAGCGCGCTTAAGCCATGAAGCGAGGCTCAAAACGTGTTGAGAGCTTCGCCTCGCTTTATGTGAGCTTCAGGGTCGTCATCAAGGTTTTAAGGCAAACGTTTCCTTGCCAATGAGCTTCGTATGAAGAAGTGACACTAAATAATTGATATTTCACTTTCTCATAATTTTTTCAATTTCTTTGGTCATATATTTGGCATTCATGTTTATAATTAATAGTCTTGGACTAAACATATATATTTGTATTCTTTTCTCCCTTTGTGCCTTTTTCATTAAAGTCCACACTTTATTTGCGCTCTACGCTCAAAGCCCTCATGGACCTTAGAGTTTTTTTGTGCTTTTCGCCTTTGATAACACTATACAGAACCCAAATGTGTAACCTAACAATCAACAAATTGGCATTTAATAGAGACCAGGATTTAAATCCCAGAGGTGATTTTTCTCGTTGGTTGACAAAGTTACATGTACTTGTGTTGGTGCTAGGTAGCAAGTATCCAGCGAAATAGTCAAGGTGTGCACAAGTTGACCCAAATGTTATGGTCAGTGTGTTGCCTCAGAAATATTGGACTAAAAGACATAATTATTCCTTAGTGTATTGATTAGCCATTAAACAATCAATAAAGAAGAGAAACCGATAGAAAGATTACCACAAAAAAATTTGGCAGGTATTGAGATTTGAGTCTGACTAAGAAATAAGAGTCCTTTGCAAGGAACTCGTCCTTAAATATTCTGCATTTATTTTTTAAATCCTTTTTTGCTGTAAAAATACTCTCTTTCAGACACCTTTTTAGTTGTTCTTTTGCTGTGATCTATTGTTTATAAATATTAAATCTGGAACCTGGATGCTTTTCTGCAGAGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATAGTGAGTTAAACAGTAGATGCTGTATTGATAAGGTGTTTTTGTTTTGGGATAGATGATCATGATATTTCTCCAGCCACTTAACTCTTGATTTTATATGTTCTGCAGTCTCAGAAACAACCAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCCGGAGTACTTCTTAGATGTTGTGAATGTAAGTATTTTTCAAGTCTCCTTTGTTTATGACCGGTTAATTTCCTGTAACCTTGTGTACAATTTCTTTATAGATATGTCCAAAGTTTTGTTGATTACTTGTTGCTTAATCTTTCATGATGTTAAGATTATGTCTCTGCCACTAACTTGTATTTAGAAGAACGCCATCTTGTAACTCGAATATATAGAAGCCCATAAAGCATAAAAAACGAAAGCCCATCTTCTCAGAGCTTTGATTTGCATGGTTGGTGCAATTTTGTTCTGAATGTCATTTGCTTGTAATACCTTCAACTCATGTCTTTTCAATTGTTTTAACTTTGATGTAGAACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATTCGACAGACAAGGGTTTATTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAGGTATGACATCAAACTCTGACCTCAACCTTCCGATTTCTCAAGTTACCTTGCATATAATACGATGTTCTAATTTGTCAAGAGTCGTGAAATTATAAATATTTGTTGGCATGCGTAGTAATTTCAAGTGCTGCTACCTTGTCCCTTCTGAACCGTATAATTTGATAAATGAGTGAGTTTTAGAAAGGAAGTCATTTATTATGAACTTTCAAGCTTTCAAGAGTAAGAAGTCTCTCTTTCAGGTCTAATATGAAGAAAGGATCATTTACTTTATGTATTTGTGCAATGAAACTTTCTAAGAACAAGTTCCATTAAGATTGTTGAACGAAACTGTGTATTGGGCTTCATTTCGACGTGCATTTACATGTAATCGATTTTGTGTTTGCAGTCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAGGTAAGTCTGCTTATCTGCTACGTAGCGTGTGTGCTTGTACAGTCTGTTTTGTTCTTGAGAAGGCCGTTAACAGCATAGATTACGCGAGTCTTAAGCATGTTTGGTGCAATCGTTATAATGCTTTTCCACGTCTGACTTATAATTTTGGGATGTTTGTGCTTTATGAAGTGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTG</genome_strand>
        <mrna_strand>GCTGGCACCTGCTTACAAGAAAAAGAACCTTAGTATATCGGACCAAAGTATATCAGCAGTGACTTTAAAAAAGATATGGGATGAGTTTCCTTTAAGTTCGAATCATTGCTTGTCAGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTGACCGATATTTCATGCTGAATATTGTAATTACAGAAATATTTTTGCATCTAAGTTATGGGTCCAAATTATCACCTGGGTTGCTGGAAAGATTTCTGGAGTTCATTGAGAGTTCTCTATCTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACGATGGCAGAGAGGCTGGTAAAGTACATCATGAGAAGCATTTAATTTCACTGGTTGCTTTTATCCCAAAACTCATTATGCAAGTGTCTGTTGCTTGGAAGTCACGTATCCTTCAG............................................................................................................................................................................................................................................................................................................................GCTTTTACGAAAGTTTTTGAGAATTGCAGTGCAGAGTCCTCAATGAAATTGGCTTGCCTTTCTGTTGTTGAAGAAATGCTACTTCCT.....................................................................................................................................................................................................................................................................................GAGCAGAATTGCCTTTATCTGGATCCCAAAGATCTTGAAATATTAAATCATAGTACATGGATAGGGGAGCTTCCAAAGCTGTTAGTCCTCTTAGGTGATAAACACCCATTACATTCAAAG......................................................................................................................................GCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATG.........................................................................................................AAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATA.........................................................................................................TCTCAGAAACAACCAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCCGGAGTACTTCTTAGATGTTGTGAAT.....................................................................................................................................................................................................................................................................................................................................AACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATTCGACAGACAAGGGTTTATTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTTTTTTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG.................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATTTGAG........................................................................................................................................................................................................................................ACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTTTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTTTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597083" ref_strand="+" ref_description="SGN-U597083 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157346126|emb|CAO15823.1| (e_value=1e-39) unnamed; (*ATH) AT5G27010.1 (e_value=3e-24) | Symbol: None | expressed protein | chr5:9503318-9507572 REVERSE | Aliases: F2P16.15, F2P16_15; ">
      <seq>gaggtgatctacacccattacattaataggctgtgttacgtcttcagctcctggttggacaaactgctaatttaaacatgacaccggcaaaacaatatgaaactatgcagtactttataagagcttcttactgcacctactccaatgaaactggcagctatggtccatccatgaggcttcctagagatattcaggagctctctgtatgctgtctgtattacttgcctttcttggacaaggtgatactcgagtctttagcctcatgctgcatatgtcacgagttggaaccatttatccttctccgagtcatggaagttatacactcagcctacaaggctggccatatacagattgcagatcacattagctggttcatcacatcgctcccacgctttcaagtggatcctgagaaaattgatcctatggagaagcacgacaggaagtcaaatcgagggaccttcacagcagcagttacggctgtttgttctcgggtggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="78726" stop="73726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78575" g_stop="78547" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.828"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78546" i_stop="78413" i_length="134">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78412" g_stop="78295" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="147" r_length="118" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105">
            <donor d_prob="0.948" d_score="0.96"/>
            <acceptor a_prob="0.823" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78189" g_stop="78064" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="273" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78063" i_stop="75189" i_length="2875">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75188" g_stop="75054" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="408" r_length="135" r_score="0.919"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75053" i_stop="74116" i_length="938">
            <donor d_prob="0.532" d_score="0.84"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74115" g_stop="74026" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="498" r_length="90" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U597083" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78575" e_stop="78547"/>
          <exon e_start="78412" e_stop="78295"/>
          <exon e_start="78189" e_stop="78064"/>
          <exon e_start="75188" e_stop="75054"/>
          <exon e_start="74115" e_stop="74026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGATAAACACCCATTACATTCAAAGGTACCTACTTAGCTACCACCAGTACTGGTCTTTCTTAGGCTGAAATTTATGCTATATGCATATCCATTTGTTCTTCAAGTTTTCACATTGAGCTGAAATTCATCTTGTGCTTCTACAATAATTGCCTCTTGTAGGCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATGGTACTTAAGATTCATCTTCATTTAGTTCCAACTTTTATTTGTTTCATAATTCTGAATCTCACATTATTAATTCCTCACATGTTTTCCCTTTTTCTTGCACTGTAGAAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATATGTAAGTACAACTCCTTGCCATGAATGATTTTTATCTCCTTAACTAGATGGCGATATCAATGTCCTTTACAAAACTAATTGGTGTTCAAATTGTTAAATTGCTTGATGTGTGTGATCATTTGATCTAAAAGTTTGAGTTGTTAGGGAGAGCACACTTCCATTGCATTTTATAACTGTCTAATTGTATGCCCTTGCAGCTTCTTTCTCACTGTCAAATAGTCCTAGATAGATATACTTCCTGCCCCATACATGCTACCCATCATTTGTGCAGAGTGACCCCCCGACACTTGGGTCCTCTCCAAAAATTCTTCTTTGGTGAAATTCTACTTCATCACTGATGTTAAAATCCTTCAACAGCATATAACTAAACAATTTCGAGAACTCTGAAACTTGGGTCCTCTCCTACTCTTCCTCTGTTGTTATCTCTGCTACCGAGACATAGCAATTCTCTGCTCATTTGAAGCATCGTAGTTGGCTAAAAGATCCAACCACCACTGCTGCGGCAACTCAGCCTCTGCAATTACCAATAGAAATAACTCACCAAATCTTCATATTCCTAAACTCTTCGTAGTCATCCCCTTCTCCATGTGTTTTCAGTATATCAAATGCATAACCATTGCAGCGAATATCTGGACATGATACTAATCATCACTGACAGTACTAGATATTTCAATGTAAACAATGGAGGAATTGGAGGTCTAGAATTCTTCATTTAGGTGACAGTTCGTTGAGCTTTTTCCGGTGCTATTTGCCCTTGTATGGAAACGGATTCAACTGGAATATCTCGAAAACTAAGATTAAGATCAAACATCTCAAATTCCCACTACAATATGTCCAAAGTTGCACTAAAAATTTTAAATAATCAAATGGGAATTCAAATTCGATAATCAAAAAATCAAGAATGCAAGAGAACAATCAAATTATGGAGATTGAGTTAAGTATCAGGGATATAAGAAAATGGTAAGTGGGTTGGGGGTGGGAATAAAAAGAAATGTGGTAATATATACACTACACAAATACATTCCTTGTGTATGACACTTTCAAATGTATTATATATAGAGAAGGGACAATGATTAAATGGTAACTACATTGGTTTTGGGCAAAAAAGGATGGGTGGAAGGGGGAGACAGTTACAAACGTTAGAGCAAACAAAGAAAACATTGGGCCGATACTACCTGCCGGTAGGAGAATCTATTGGATCTCTACCAAGACCGTAGAGGCTTTGATACTATCTTGAACTGTTTGCGTGTCTGATCATTTCATCTAAAAGTTTTAATTGATTAGAGAGATCCCATTTATATACTTTATTATGTCTTTATACAAATGTTGCATGATTTGCCTAGTTATTCAGGGATTGGCGGGAATATTGTAATTTAAGAGGTCACCATCTTATATAAAAGTTTGTTGGAGGAATACACTTTAATTTATTCTTTTATATATTCAACATGCTCCCTTGACTGCGAACTTGGTTTTTTTATCGGCCAAGCACGTGGACTGAGGACCATCTTAAGAGGCCGCTTTGAGGTAATATTGAAGTGTGTGACTATCTCATCCAAAAGTTCATGTTGTTAAGAGAACATACTTCTATTTTTTAAAATATATCTTCAATAAGTGTTATAGCTGTTTTGCGAGTGAATCCCATTGATTAAACAAGAAAATAGAAAAGAGGCTAGGAAAATTGAAGGCGCAAAGCTAGGAGTAGCAAAATGGAGAGAAATTGATAGAGCAGAAGAAGGGCTGAATTACTGGTTGAGTAAAAATGTTTGCATGATTCTACCTGAAATATCTTTGAAACTCATATAAAGTTAACCACATGACTTGGATTTTAAGGGTACTTGCCAAATGAGTTACTTGACACTCACATGTCCTCCAATTCCATGGGGGTAAGGTGGGCCTATAGGTCTGGTTTCAACAATGTCACTAACAACTTGAATAAAACCATCTCTAGCATCAGTAAGGTTTTTGCTCCTAGACCAGTTGGACTACCATGAATGCATGACCTATTCTTTTTGAGTCACAGAGTGCAAGTGTGTCATAACATCAATTTTCATCACATTCCTGGAATGCTCAGAGCATGTTGGATTGAAATCATCAGGTCGCGATTCTTTTATCGTGAATAATTCTTTACCGTTTTTTCCACCCCTCTCAAATGGATTCTCAAGCAATTCCTTATTACTCTAACTAATTCGTCACAAATTAAAATATTTCCAATAAATTGTTGTCCCCAGTCAATGTTCTCATCACAAGTGTTGATAATATTATATTATATCATCATAACTATCATCTTCTTCCTCCAGCATATGCCCACTAATTTGTAGCTTTTATGGAGCATGTTTACTGCATTGAACCGGAGGATTATTGTCTCTCAGGTTTTCATTGATGTTCTCTTAAATATTATATTTGATGTTCATGGATCATGAGTGTCACCAATACGTCAGTGTTCCCTAAAAGTTCTTTTTTTGGGTGTGTATTTGTGTTTTTTTTTGTGTTTACAGTAAAATTGGACGAGATTTTGATAGAAGTTTGGCGTATGTTCTTTCAGGCCATGACGGTTCCAGTGAATGACCTTATTGTTTGAATTGGTTCTAAAATATTTTACATAAACGTTCTTCTCTTGTCTCAGGAGAAATGATATGACTTTATAGGTTCAGACATATTTTAAATAAATGTTCCTTCTCTTGTATCGGGAAGAAATGTTATATACTTAAATAAAGGGAAATTCTCTTTGGTTAGCATCTACATGTATTGTTACAAAAAATGATTCAGTCAAAATATATTAGAAGAAGCACAAATATATATCTTTGGTGCTTCTATCTTGTATGAGTATGAGCAGTCATTCTCACGATATTATTTCATCTATGGTTGTTTTAATGTAGGTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTGGTACCTTCTGAATCAGGCTTTTTGGTGTTCCTCAGTCCTTTTAAGAATTTGAAAACTATAGAAGTGTTATCAAAGGCGCGCTTTAAGCGCGCTTAAGCCATGAAGCGAGGCTCAAAACGTGTTGAGAGCTTCGCCTCGCTTTATGTGAGCTTCAGGGTCGTCATCAAGGTTTTAAGGCAAACGTTTCCTTGCCAATGAGCTTCGTATGAAGAAGTGACACTAAATAATTGATATTTCACTTTCTCATAATTTTTTCAATTTCTTTGGTCATATATTTGGCATTCATGTTTATAATTAATAGTCTTGGACTAAACATATATATTTGTATTCTTTTCTCCCTTTGTGCCTTTTTCATTAAAGTCCACACTTTATTTGCGCTCTACGCTCAAAGCCCTCATGGACCTTAGAGTTTTTTTGTGCTTTTCGCCTTTGATAACACTATACAGAACCCAAATGTGTAACCTAACAATCAACAAATTGGCATTTAATAGAGACCAGGATTTAAATCCCAGAGGTGATTTTTCTCGTTGGTTGACAAAGTTACATGTACTTGTGTTGGTGCTAGGTAGCAAGTATCCAGCGAAATAGTCAAGGTGTGCACAAGTTGACCCAAATGTTATGGTCAGTGTGTTGCCTCAGAAATATTGGACTAAAAGACATAATTATTCCTTAGTGTATTGATTAGCCATTAAACAATCAATAAAGAAGAGAAACCGATAGAAAGATTACCACAAAAAAATTTGGCAGGTATTGAGATTTGAGTCTGACTAAGAAATAAGAGTCCTTTGCAAGGAACTCGTCCTTAAATATTCTGCATTTATTTTTTAAATCCTTTTTTGCTGTAAAAATACTCTCTTTCAGACACCTTTTTAGTTGTTCTTTTGCTGTGATCTATTGTTTATAAATATTAAATCTGGAACCTGGATGCTTTTCTGCAGAGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGC</genome_strand>
        <mrna_strand>GAGGTGATCTACACCCATTACATTAATAG......................................................................................................................................GCTGTGTTACGTCTTCAGCTCCTGGTTGGACAAACTGCTAATTTAAACATGACACCGGCAAAACAATATGAAACTATGCAGTACTTTATAAGAGCTTCTTACTGCACCTACTCCAATG.........................................................................................................AAACTGGCAGCTATGGTCCATCCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTGCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGTTGGAACCATTTATCCTTCTCCGAGTCATGGAAGTTATACACTCAGCCTACAAGGCTGGCCATATACAGATTGCAGATCACATTAGCTGGTTCATCACATCGCTCCCACGCTTTCAAGTGGATCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATTGATCCTATGGAGAAGCACGACAGGAAGTCAAATCGAGGGACCTTCACAGCAGCAGTTACGGCTGTTTGTTCTCGGGTGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594026" ref_strand="+" ref_description="SGN-U594026 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gacaaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="81655" stop="80511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81356" g_stop="80790" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U594026" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81356" e_stop="80790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATCACATATCCTCAACAACAACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAAAGGCAATCACTAGATCAGCAAAACACAATATCAAGTTCACTAATGATAAGTATGTGCAATGTAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCGCACAGTTCACAACAACCACAAAAACATGAAGTTACATAAACAATGATTC</genome_strand>
        <mrna_strand>GACAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTT--C-ACAACCACACAAACATCAAGTTACATCAACAATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594001" ref_strand="+" ref_description="SGN-U594001 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>taccaccccaaccgaacctccacaactacaacctacataaacatcagcacaacctaacaactcacagtttacatagaacgtaactctacaaaaacatttagacaaattacatatcctccacaacaacactttaacaaattacatatcctcaacatcaacacttaaacaaattagatatcctcaatagcaacacttccaaaaatttacatatcctcaataacacacttcaacaaatcacatatcctcaacaacaacacttcaacaaattatatatcctcaataacaagctcagtattcaacaatcacaagttccgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="81916" stop="80934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81616" g_stop="81411" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81410" i_stop="81348" i_length="63">
            <donor d_prob="0.900" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81347" g_stop="81234" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="319" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U594001" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81616" e_stop="81411"/>
          <exon e_start="81347" e_stop="81234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCACCCCCAACCGAACCTCCACAACTACAACCTACATAAACATCAGCCCAACCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCCACAACAACACTT-TACAAATTATATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTACATATCCTCAATAACACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</genome_strand>
        <mrna_strand>TACCA-CCCCAACCGAACCTCCACAACTACAACCTACATAAACATCAGCACAACCTAACAACTCACAGTTTACATAGAACGTAACTCTACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTA...............................................................CATATCCTCAATAAC-ACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599461" ref_strand="+" ref_description="SGN-U599461 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157346126|emb|CAO15823.1| (e_value=4e-85) unnamed; (*ATH) AT5G06350.1 (e_value=1e-72) | Symbol: None | expressed protein | chr5:1938782-1944358 FORWARD | Aliases: MHF15.13, MHF15_13; (*SWP) sp|Q9NXF1|TEX10_HUMAN (e_value=6e-24) Testis-expressed sequence 10 protein OS=Homo sapiens GN=TEX10; ">
      <seq>gtgtgttagctgataaaccctaattcaaattcttgattttttaaaaaaaatttagtaacttttttctctgcgattaataatggtgaagaataaagctcaatcaaaaaagcagcaaaaacgtggtgttgatttcaaaaaaataagaaggaagattggaagaaaattgcctcctgcacagaatgccaccaacactgaaatcaaatcaaaagcaatcattctacctgagcaaagtatagcttcggagaaggctggtttagctgtgagcaagaaaggtttaaccttgaaagagcttcttcagcaaacaagtcatcacaatgcgaaagttcgtaaagatgcattaatcggaattagagacgttcttcttaaattcccatctgagttgaaactgcataagcttgctgttattgagaaactgagggaacgtatcagtgatgatgataagttggtccgtgaagcactatatcaacttctcaaatcagttatttttcctggctgtaaagaggataataaggggccaattaattccttgatgatgacatatatatttaatgcaatgacacacatggctatngaagtgcggttganggctttcaaattttttgacctcttgatccagtattttccatcttgctttttgctgtatgctgagaanattctccanaanta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="91482" stop="86116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91183" g_stop="91048" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91047" i_stop="90952" i_length="96">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90951" g_stop="90879" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="209" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90878" i_stop="90029" i_length="850">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90028" g_stop="89906" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="332" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89905" i_stop="89173" i_length="733">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89172" g_stop="89003" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="502" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89002" i_stop="86565" i_length="2438">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86564" g_stop="86415" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="652" r_length="150" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U599461" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91183" e_stop="91048"/>
          <exon e_start="90951" e_stop="90879"/>
          <exon e_start="90028" e_stop="89906"/>
          <exon e_start="89172" e_stop="89003"/>
          <exon e_start="86564" e_stop="86415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTTAGCTGATAAACCCTAATTCAAATTCTTGATTTTTTAAAAAAAATTTAGTAACTTTTTTCTCTGCGATTAATAATGGTGAAGAATAAAGCTCAATCAAAAAAGCAGCAAAAACGTGGTGTTGATTTCAAAGTAAAAAAAAAAAATTCAATGAATCTTGAAATTGTTAATAAAAATCGATTCTTGTTTGTGTTTATTGAACTGGGATTTTTTTGATTTGGTTTGCAGAAAATAAGAAGGAAGATTGGAAGAAAATTGCCTCCTGCACAGAATGCCACCAACACTGAAATCAAATCAAAAGGTAAAAAAAATGCTGAATGTTTTAAGGTGTATTTTGCATATGTGTTGTGTTGTTTGTGTATATATAGTTTAAGTTAAAAAGAATGGTAAAATGGATAACCCCTTTTTCTGTAATTGTATGTTTGGTTATTTTTTCATCCATTTTTATGTGTTAAAGTTGGTGCTTTAACCAGTTTGGGTTAATGGGGGTCAATTAGTAATGTGAATTCAGGTATTTCTCGATTAATGATCTTCCCGAACACACAAGAAAAGGTGGAACCTTTAGCAATATACTTCTAATGTCGAATCAGGATCAACTAGGAGAGAAATAGAGAATTGGGTAGAACTCTTCTTTGAGTGTCAAGGTAATAGTTGTGAATAGTCGTCGACTTCTGGGAAAGAGTAGGAGAATGCGACCTATTATGGGATATACCATTGTGTTGTATTCCACCTCTTAGTAATAAAAGAATGCAAGTAAAATACTTAATAGCATGGTGATACGTTTTTATACGAAGCTTCTACCCCGAGTATACCGTATACGCAATGGTATCGTAGACATTCCGGAGGTCTGTCCCTTTTTTCGGCTTCCTCTGCCACTATTGGCCACTGGTTCATGTTCAACACCTTTTGCTGCCGGTTCATTTGTTAAATCCAGTTCAGCAGCTACTGATACAAACCAGAAACAGATACTACTTTTTTACATAAGTAATACAAGTATTGCAGTTTTTTTTTCAAGAAATGGAAAAGATCTTTCAGAGCGAAGTATAACACCCTGTCTTCTCTTTTAATTTCTTCCCCAAAAGTATAACATCCGTATCTGCGGTAGAGGAGAATTAACGAATTAAAGTGCTTTATTGATGACTTAATTGCAGCAATCATTCTACCTGAGCAAAGTATAGCTTCGGAGAAGGCTGGTTTAGCTGTGAGCAAGAAAGGTTTAACCTTGAAAGAGCTTCTTCAGCAAACAAGTCATCACAATGCGAAAGTTCGTAAAGGTAAAAACTTATTAAGATTATTGCTTATCGGGGACAACGATCTGAATATCATGCAGTTTCAACACATTAAAGAGTAGAAAAGTGAAAAACAGAACTGTTACACTTAACCTTTCTGATTTTTTATTGTTTATTTCAAAAAAAAAAAAAACAAGAAAAAAACAGAAGATAGAAAGAAGAACAAATCAATCAATTGATTTACATGGCATATGCTCTAATCAAGCAAAGTTGCTGCATTTAATCAATTCTCCTTTCGGGTGGCTCCCGAGGTGAAGTGATAAAAGCTATGAGAAGATTATTCCAGAAATTTCACAAAACTCCGCATCATGCAATGTTGTATCTGTTTTCTACTTACATGTTATGTGTGCCCTTTGGCACTTGCGTTCTCCTTCCGTTCTTCTTTTTGCTTTTTCTCTATTTGGTATTCTATTTTCCTTTTGGTTTCTATTTGGAAAAGACTTTCAAGTGGCAGTAGTATGATTATAATAGATGAACTTATGTCACTCTTCTAGAGCTAGCCTTTCACTGCTTTAAAGTTCACTTTTTTTTTTAAGTCATTTGTTCCTTTGGTTAGAAAAATATTAGGTGTCTTGTGAACATCCTATATTGAGTAAGGCAAGTATTTGAGATTGCAAAACGAGTTCTACCCATATTGTTGCTTTTATGCCTTATTTCTTGTCTTTGAAGTTATGGTATAATGTAATCGTTACCCATGTGATATCTCTGTTAAATTCAGATGCATTAATCGGAATTAGAGACGTTCTTCTTAAATTCCCATCTGAGTTGAAACTGCATAAGCTTGCTGTTATTGAGAAACTGAGGGAACGTATCAGTGATGATGATAAGTTGGTCCGTGAAGCACTATATCAACTTCTCAAATCAGTTATTTTTCCTGGCTGTAAAGAGGTAGGCTCATTAACCTTTTTTCTTCCAGTCCTCTCTTCATCACCTGGCATGGTTTCTAGGAGTGAAAGTGCATTTGGTATGCATACTACTACTACACTTGTAAGCCTCTTTCTTCAACACTTCCTAGAGAAATTTATTCATCACGTGTAGTAGTTTCCATGCACTACAATCCCACTTAAGTGACCATCGTTTTTCTTGTTGTACTTCAACAACAACATACCCAGTAATCCCATGAGTGGGATTGGGGAAGGACATAGTGTACACAGACCTTCCCCTACCCTGCCAGAGATAGCTAGATTATTTCTGATAAGACCCTCGGCTTAAATAAGGCATATTCAAGCAGTTCAAAAGGGGAACAGAAACAAGAATAGTAACAACGATGAAACAATGTGAAATGAAGAGCAGTACACAACATAGAGAGGAAAGAACAGTAGTGACAACAAATTAATGCGATAGTCAAAGCGCAAAAAATAAAGGTGATAACCAAATCCGAAGAATAAAAAACAACGAGAATAGTGCTAATACCACTAGTAAAGTGCTAATACCTCTAGTAAGAAAGAAGGTCTAAGCACGACCACCATGCCTATCGTGCAGGAAGCGTGTGAATGCTCAACTTCCAACTAGCTTTCTACCCTAATTCACAGTCTCCAAATAGTGCTGTCAAAGGCGTGCTTTAACCTTGAAGCGTGGCTCTAAATGTGTTTTGCGCTTCACCTCGCTTAGTGTGCATTTCATTGCCGTTATTAAAGGTTCCAAGGCATGCTTTTCCTTGCCAATGAGACGCTAAACAATTGATATTTTACTTTATTCTATATTCAGTTTCTTTGTTCATATAAATGTCATTCGTGCTTATAATTGTTAGTCTTGGACTAAACATATATATTTATATTTTTTTTCCTATTGCGTCTTTTTTCATTAAAAGCCCGCTCTTTATTTGTGCTTTGCGCTTAAAATCCCAACAAACCTTCGAGCTTTTTTATGCATTTTGGTTTTGATAACACTCCCTCTCAACCATCCTATCTAAGGCCATGTCATAGTTAAACTCAAGATGCGTCACGTTTTGTCTAATCCCTCCCCCGTACTTCTTCGGCCTACCTCTATCCTTCCTAATGCCCTTCTTCGCCAACCTCTCACACCTCCTCACTGGGTTATCTATATTTCTCCTCTTCGCATGCCTAAACCATCGTAGTGTCACTTCCCTCATCTTGACCACCTGAAACCAAGTGAGAACTATGCCTAAATAAACCAATTGAGTCTCAACTGCATCACTAAAAAATAGGGCATCATTTGTAAACAATAAATGAGACATTGATACTGTCCCTACGCCCCCAACCGCAACATCGAAACCCTTCAAACAATCCCCTAAAGATAGCTCTCTCTATCATCTTAGAGCTTCCATAACTGGAATGAACAACACTGGTGATAGAGGATTCTCTTATCTCAGACCACTCGAACTTCCAAAAAACTCACACGGGTTAACATCCACCAACACAGAAAATCTCGCTGAAGAGATGCAAAAATATATCAATTTCCTCCACTTCTCACCAAATCCCATTTCAAGCATAATGGAATCTAGGAATTTCCAGTTCACATGAGCATAAGCCTTTTCAAGATCAAGTTTGCACAACACTCCTTACTTTATCCTTGAATCCACCACTTTGTTTGCCACCCCTGCATCTAGAAAATGTCTTGTGGGAAGCATCTATAATATAATCGAAGAGATGCAAAAATGAATCAATTTCCTCCACTTCTCCCCAAATCCCATTTCAAGCATAATGGCATATAGAAACTCCAGTTCACATGATCATAGGCCTTTTCAAGATCAAGTTTGCACAACACTTCTTGCTTTATCCTTGAATCCACCACTTTGTTTGCCACCCCTGCATCTAGAATATGTCTATCCTCCACAAAAACATTTTACGAAGTAGAGACAGTTTGTCTCGTCGAACACTTTTTAAGTCTAACAGAAAGCACCTTAGAGATTATCTTATAGACGATTCCCACTAGACGAATAGGCCTATAGTCCTTTGTGCTCGTAGTTCTCTCCTTTTGGGGATGATGAATGATACTGAATGAAGCATTCACACTATCATTGAAGCAATACAGCATGTGCGTTTCCTCTGCTGTTAATTTGATTTCCATGGGTGAAATTTTAAGAAGAGCTAGAGTTTGCTTCTATTGCCTTCAAATTTTACTATTAGTTCCATTTCTGCTTGTTCGTCTTGAGGATTTCAGATTAGTTAAACCTTCCCATGAATCCCCTGTTTCTGTTTGTGGTTTTGCTGTATCTGCTTATATTCTCTTAGTATTTAAGTGCAGATAGCTGTATTTTCTTTTTGCTGTGATTATGGATGTTGTTTGTTTGATACAGGACTTTGTAGTTTGTATTATGTCTCACCTATAAAAGACGGGGCTGACGCTATTTGTTTGTGTTGCAGGATAATAAGGGGCCAATTAATTCCTTGATGATGACATATATATTTAATGCAATGACACACATGGCTATTGAAGTGCGGTTGATGGCTTTCAAATTTTTTGACCTCTTGATCCATTATTTTCCATCTTGCTTTTTGCTGTATGCTGAGAAG</genome_strand>
        <mrna_strand>GTGTGTTAGCTGATAAACCCTAATTCAAATTCTTGATTTTTTAAAAAAAATTTAGTAACTTTTTTCTCTGCGATTAATAATGGTGAAGAATAAAGCTCAATCAAAAAAGCAGCAAAAACGTGGTGTTGATTTCAAA................................................................................................AAAATAAGAAGGAAGATTGGAAGAAAATTGCCTCCTGCACAGAATGCCACCAACACTGAAATCAAATCAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCATTCTACCTGAGCAAAGTATAGCTTCGGAGAAGGCTGGTTTAGCTGTGAGCAAGAAAGGTTTAACCTTGAAAGAGCTTCTTCAGCAAACAAGTCATCACAATGCGAAAGTTCGTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATTAATCGGAATTAGAGACGTTCTTCTTAAATTCCCATCTGAGTTGAAACTGCATAAGCTTGCTGTTATTGAGAAACTGAGGGAACGTATCAGTGATGATGATAAGTTGGTCCGTGAAGCACTATATCAACTTCTCAAATCAGTTATTTTTCCTGGCTGTAAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATAAGGGGCCAATTAATTCCTTGATGATGACATATATATTTAATGCAATGACACACATGGCTATNGAAGTGCGGTTGANGGCTTTCAAATTTTTTGACCTCTTGATCCAGTATTTTCCATCTTGCTTTTTGCTGTATGCTGAGAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586498" ref_strand="+" ref_description="SGN-U586498 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157346124|emb|CAO15821.1| (e_value=0) unnamed; (*ATH) AT2G01820.1 (e_value=0)  Symbol: None | leucine-rich repeat protein kinase, putative, similar to protein kinase TMK1 gi:166888:gb:AAA32876; contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr2:357437-360680 REVERSE | Aliases: T23K3.1,... ; (*SWP) sp|P43298|TMK1_ARATH (e_value=0) Putative receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1; ">
      <seq>tttcttgatttagcattctttagatgaaaaatccacttttatatggtcatttcttgctactaaatcttcatttatcataaaaaagatcaaattttttggattactctgtaaaaactactgtgttgtcagcaagaacaacaccatagtagtagcaagtagcaactaccaagcattgtgctttttctcactccaattatcactctctttctccttttttatgttttggggtttagtgatctgaaccccatgttttccacatcttattgtctcaagatttgacatgggggtcttcaagaatcaacctcattaggtggcaaagattgaagctttcttgatttttgttgtagtggggtgttttcttttttgttgttgaatgttaatgcaaatgctcaaatgttgttgctttgtggatcatctatggagttatattttcaccacatatggtttgttgtagctttgtttcttgcttttgcttcacttgttttcactgtcactgaccctaatgacttgtcaattattaatgagtttagaaaagggttggaaaatcctgaggtcttgaaatggcctgaaaatggtggagacccttgtggttctccagtttggccacatattgtgtgtagtggtagtagaattcagcagattcaagttatggggttagggttaaaagggcctttacctcaaaacttgaataagttgtctaggttgacacatttggggttgcaaaagaatcaatttagtggaaagttgccatcttttagtggtttatctgaattgagctttgcttacttggatttcaatcagtttgacacaatcccattagatttttttgatggacttgtgaatctacaagttttggctttagatgaaaatcctctaaatgctactagtggttggtcattgccaaatgggcttcaagattcagctcagttgatcaatttaacaatgataaactgcaatttagctggtcctttgcctgaatttcttggaactatgtcttctttagaggttttgttgttgtcttcaaataggctttcagggcctattccaggtactttcaaggatgcagtgctgaagatgctttggttgaacgatcagtcgggtgatggtatgagtggttcaatagatgttgttgcaactatggtatcacttacacatctttggcttcatgggaatcaattttcaggtaaaatcccagtagagattggtaatctaacaaatctgaaggatctcagtgtgaatacaaataaccttgttggattaatccctgaaagtttagctaatatgccattagacaatcttgatttgaataataatcattttatgggaccagttcctaagttcaaggctactaatgttagttttatgtccaactctttttgtcaaaccaaacaaggagcagtatgtgcccctgaggttatggcacttttagagtttcttgatggggtgaattatccttctaggcttgttgaatcatggtctggaaacaacccttgtgacggacgttggtggggaataagctgtgacgataaccaaaaagttagtgttataaacttgcccaagtctaatctttccgggaccttgagtccttcaatcgcgaaccttgaaaccgttactcgcatttatcttgaatcaaataatctttctggttttgttccatctagttggactagtttgaaatctctgtctattcttgatttgagtaataacaatatttccccacctttgcctaaatttaccacccctttgaaacttgttctaaatggaaatccaaagctgacttctaatcctcctggagcaaatccttcaccaaacaacagcacaactcctgcagattcacccacgtcgtctgtaccatcttcacgacccaacagttcaagctctgtgatctttaaacccagtgaacagtcacccgagaaaaaggactcaaagtcaaagatagctatagttgtggttcctattgctggttttctacttttggtttgtcttgctattccactgtacatttatgtctgtaagaagagtaaagataagcatcaagctccaactgctcttgtggttcatcctagagatccgtctgattcggataatgtagtcaagattgcgattgccaatcagactaatggaagtctttccacagtaaatgcaagtggttctgctagcatacacagtggtgaatcccatatgatcgaagctgggaatttgctcatatcggttcaagtacttcggaatgtgactaagaatttttctccggaaaatgaacttggacgtggtggttttggtgtggtttataagggagaattagatgatgggacacaaatagctgtcaaaagaatggaggctggtattgttagcaacaaagctttggatgaatttcgatctgaaattgatgtcctctcaaaagtccggcatcgacatttagtgtctctactgggatactctgttgaaggtagtgaaagaattctggtttatgagtacatgccacaaggtgcacttagtagacatcttttccgctggaaaaacttcaagttagagcctctctcttggaagaaaaggcttaatattgccttagatgttgctagaggtgtggagtatctacacacactagcacatcagagcttcattcatagagatctcaaatcctcaaatatcttgttgggtgatgatttccgagcaaaagtatccgactttggacttgtgaaactcgctcctgataaagagaaatctgttgtcaccaggctggctggaacttttggatatctggcacctgaatatgctgttacgggtaaaatcaccacgaaagctgatgtatttagctttggtgttgtgctaatggagttgttaactgggatgatggcacttgatgaggatagacctgaggaaagccagtacttggtttcgtggttctggaacgccaaatcctctaaagagaagcttatgacagtcattgatccaactctagacgtgaaagatgagataaccgagagcatttccaccttagctgaacttgctggtcattgcactgcaagagaacctggtcaacggccagatatgggccacgctgtaaacgtgctgtccccacttgttgagaaatggaagcctcttgaggatgatccagaggactattgtggtatcgactacagtcttcccctcaatcaaatggtcaagggttggcaagaatcggaaggaaaagacttaagttacgtggatctcgaggacagtaagggcagtatcccagcaagaccaactggatttgcagattcatttacatcagctgatggtagataatggaggtacttctatgtagtagatgtagatatcaattttctttgtattgtattgagattttgatcgtattttccacgtgccttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="98498" stop="94392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98198" g_stop="95424" g_length="2775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2776" r_length="2776" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95423" i_stop="95286" i_length="138">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95285" g_stop="94691" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="2777" r_stop="3371" r_length="595" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U586498" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>3370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98198" e_stop="95424"/>
          <exon e_start="95285" e_stop="94691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGATTTAGCATT-ATTAGATGAAAAATCCACTTTTATATGGTCATTTCTTGCTACTAAATCTTCATTTATCATAAAAAAGATCAAATTTTTTGGATTACTCTGTAAAAACTACTGTGTTGTCAGCAAGAACAACACCATAGTAGTAGCAAGTAGCAACTACCAAGCATTGTGCTTTTTCTCACTCCAATTATCACTCTCTTTCTCCTTTTTTATGTTTTGGGGTTTAGTGATCTGAACCCCATGTTTTCCACATCTTATTGTCTCAAGATTTGACATGGGGGTCTTCAAGAATCAACCTCATTAGGTGGCAAAGATTGAAGCTTTCTTGATTTTTGTTGTAGTGGGGTGTTTTCTTTTTTGTTGTTGAATGTTAATGCAAATGCTCAAATGTTGTTGCTTTGTGGATCATCTATGGAGTTATATTTTCACCACATATGGTTTGTTGTAGCTTTGTTTCTTGCTTTTGCTTCACTTGTTTTCACTGTCACTGACCCTAATGACTTGTCAATTATTAATGAGTTTAGAAAAGGGTTGGAAAATCCTGAGGTCTTGAAATGGCCTGAAAATGGTGGAGACCCTTGTGGTTCTCCAGTTTGGCCACATATTGTGTGTAGTGGTAGTAGAATTCAGCAGATTCAAGTTATGGGGTTAGGGTTAAAAGGGCCTTTACCTCAAAACTTGAATAAGTTGTCTAGGTTGACACATTTGGGGTTGCAAAAGAATCAATTTAGTGGAAAGTTGCCATCTTTTAGTGGTTTATCTGAATTGAGCTTTGCTTACTTGGATTTCAATCAGTTTGACACAATCCCATTAGATTTTTTTGATGGACTTGTGAATCTACAAGTTTTGGCTTTAGATGAAAATCCTCTAAATGCTACTAGTGGTTGGTCATTGCCAAATGGGCTTCAAGATTCAGCTCAGTTGATCAATTTAACAATGATAAACTGCAATTTAGCTGGTCCTTTGCCTGAATTTCTTGGAACTATGTCTTCTTTAGAGGTTTTGTTGTTGTCTACAAATAGGCTTTCAGGGCCTATTCCAGGTACTTTCAAGGATGCAGTGCTGAAGATGCTTTGGTTGAACGATCAGTCGGGTGATGGTATGAGTGGTTCAATAGATGTTGTTGCAACTATGGTATCACTTACACATCTTTGGCTTCATGGGAATCAATTTTCAGGTAAAATCCCAGTAGAGATTGGTAATCTAACAAATCTGAAGGATCTCAGTGTGAATACAAATAACCTTGTTGGATTAATCCCTGAAAGTTTAGCTAATATGCCATTAGACAATCTTGATTTGAATAATAATCATTTTATGGGACCAGTTCCTAAGTTCAAGGCTACTAATGTTAGTTTTATGTCCAACTCTTTTTGTCAAACCAAACAAGGAGCAGTATGTGCCCCTGAGGTTATGGCACTTTTAGAGTTTCTTGATGGGGTGAATTATCCTTCTAGGCTTGTTGAATCATGGTCTGGAAACAACCCTTGTGACGGACGTTGGTGGGGAATAAGCTGTGACGATAACCAAAAAGTTAGTGTTATAAACTTGCCCAAGTCTAATCTTTCCGGGACCTTGAGTCCTTCAATCGCGAACCTTGAAACCGTTACTCACATTTATCTTGAATCAAATAATCTTTCTGGTTTTGTTCCATCTAGTTGGACTAGTTTGAAATCTCTGTCTATTCTTGATTTGAGTAATAACAATATTTCCCCACCTTTGCCTAAATTTACCACCCCTTTGAAACTTGTTCTAAATGGAAATCCAAAGCTGACTTCTAATCCTCCTGGAGCAAATCCTTCACCAAACAACAGCACAACTCCTGCAGATTCACCCACGTCGTCTGTACCATCTTCACGACCCAACAGTTCAAGCTCTGTGATCTTTAAACCCAGTGAACAGTCACCCGAGAAAAAGGACTCAAAGTCAAAGATAGCTATAGTTGTGGTTCCTATTGCTGGTTTTCTACTTTTGGTTTGTCTTGCTATTCCACTGTACATTTATGTCTGTAAGAAGAGTAAAGATAAGCATCAAGCTCCAACTGCTCTTGTGGTTCATCCTAGAGATCCGTCTGATTCGGATAATGTAGTCAAGATTGCGATTGCCAATCAGACTAATGGAAGTCTTTCCACAGTAAATGCAAGTGGTTCTGCTAGCATACACAGTGGTGAATCCCATTTGATCGAAGCTGGGAATTTGCTCATATCGGTTCAAGTACTTCGGAATGTGACTAAGAATTTTTCTCCGGAAAATGAACTTGGACGTGGTGGTTTTGGTGTGGTTTATAAGGGAGAATTAGATGATGGGACACAAATAGCTGTCAAAAGAATGGAGGCTGGTATTGTTAGCAACAAAGCTTTGGATGAATTTCGATCTGAAATTGATGTCCTCTCAAAAGTCCGGCATCGACATTTAGTGTCTCTACTGGGATACTCTGTTGAAGGTAGTGAAAGAATTCTGGTTTATGAGTACATGCCACAAGGTGCACTTAGTAGACATCTTTTCCGCTGGAAAAACTTCAAGTTAGAGCCTCTCTCTTGGAAGAAAAGGCTTAATATTGCCTTAGATGTTGCTAGAGGTGTGGAGTATCTACACACACTAGCACATCAGAGCTTCATTCATAGAGATCTCAAATCCTCAAATATCTTGTTGGGTGATGATTTCCGAGCAAAAGTATCCGACTTTGGACTTGTGAAACTCGCTCCTGATAAAGAGAAATCTGTTGTCACCAGGCTGGCTGGAACTTTTGGATATCTGGCACCTGAATATGCTGGTAAGCAATTTTTTGCTTACTTTGTCAAAGAGAAAAGATAGTTTTTAAAAAATGCATGTTAATGTGAATAGCATTTTATTATTTTGCATACCCAATGTGCTGTTTTCTGAACTAACATGAGATGTTTATCTGGTCCAGTTACGGGTAAAATCACCACGAAAGCTGATGTATTTAGCTTTGGTGTTGTGCTAATGGAGTTGTTAACTGGGATGATGGCACTTGATGAGGATAGACCTGAGGAAAGCCAGTACTTGGTTTCGTGGTTCTGGAACGCCAAATCCTCTAAAGAGAAGCTTATGACAGTCATTGATCCAACTCTAGACGTGAAAGATGAGATAACCGAGAGCATTTCCACCTTAGCTGAACTTGCTGGTCATTGCACTGCAAGAGAACCTGGTCAACGGCCAGATATGGGCCACGCTGTAAACGTGCTGTCCCCACTTGTTGAGAAATGGAAGCCTCTTGAGGATGATCCAGAGGACTATTGTGGTATCGACTACAGTCTTCCCCTCAATCAAATGGTCAAGGGTTGGCAAGAATCGGAAGGAAAAGACTTAAGTTACGTGGATCTCGAGGACAGTAAGGGCAGTATCCCAGCAAGACCAACTGGATTTGCAGATTCATTTACATCAGCTGATGGTAGATAATGGAGGTACTTCTATGTAGTAGATGTAGATATCAATTTTCTTTGTATTGTATTGAGATTTTGATCGTATTTTCCACGTGCCTTCGC</genome_strand>
        <mrna_strand>TTTCTTGATTTAGCATTCTTTAGATGAAAAATCCACTTTTATATGGTCATTTCTTGCTACTAAATCTTCATTTATCATAAAAAAGATCAAATTTTTTGGATTACTCTGTAAAAACTACTGTGTTGTCAGCAAGAACAACACCATAGTAGTAGCAAGTAGCAACTACCAAGCATTGTGCTTTTTCTCACTCCAATTATCACTCTCTTTCTCCTTTTTTATGTTTTGGGGTTTAGTGATCTGAACCCCATGTTTTCCACATCTTATTGTCTCAAGATTTGACATGGGGGTCTTCAAGAATCAACCTCATTAGGTGGCAAAGATTGAAGCTTTCTTGATTTTTGTTGTAGTGGGGTGTTTTCTTTTTTGTTGTTGAATGTTAATGCAAATGCTCAAATGTTGTTGCTTTGTGGATCATCTATGGAGTTATATTTTCACCACATATGGTTTGTTGTAGCTTTGTTTCTTGCTTTTGCTTCACTTGTTTTCACTGTCACTGACCCTAATGACTTGTCAATTATTAATGAGTTTAGAAAAGGGTTGGAAAATCCTGAGGTCTTGAAATGGCCTGAAAATGGTGGAGACCCTTGTGGTTCTCCAGTTTGGCCACATATTGTGTGTAGTGGTAGTAGAATTCAGCAGATTCAAGTTATGGGGTTAGGGTTAAAAGGGCCTTTACCTCAAAACTTGAATAAGTTGTCTAGGTTGACACATTTGGGGTTGCAAAAGAATCAATTTAGTGGAAAGTTGCCATCTTTTAGTGGTTTATCTGAATTGAGCTTTGCTTACTTGGATTTCAATCAGTTTGACACAATCCCATTAGATTTTTTTGATGGACTTGTGAATCTACAAGTTTTGGCTTTAGATGAAAATCCTCTAAATGCTACTAGTGGTTGGTCATTGCCAAATGGGCTTCAAGATTCAGCTCAGTTGATCAATTTAACAATGATAAACTGCAATTTAGCTGGTCCTTTGCCTGAATTTCTTGGAACTATGTCTTCTTTAGAGGTTTTGTTGTTGTCTTCAAATAGGCTTTCAGGGCCTATTCCAGGTACTTTCAAGGATGCAGTGCTGAAGATGCTTTGGTTGAACGATCAGTCGGGTGATGGTATGAGTGGTTCAATAGATGTTGTTGCAACTATGGTATCACTTACACATCTTTGGCTTCATGGGAATCAATTTTCAGGTAAAATCCCAGTAGAGATTGGTAATCTAACAAATCTGAAGGATCTCAGTGTGAATACAAATAACCTTGTTGGATTAATCCCTGAAAGTTTAGCTAATATGCCATTAGACAATCTTGATTTGAATAATAATCATTTTATGGGACCAGTTCCTAAGTTCAAGGCTACTAATGTTAGTTTTATGTCCAACTCTTTTTGTCAAACCAAACAAGGAGCAGTATGTGCCCCTGAGGTTATGGCACTTTTAGAGTTTCTTGATGGGGTGAATTATCCTTCTAGGCTTGTTGAATCATGGTCTGGAAACAACCCTTGTGACGGACGTTGGTGGGGAATAAGCTGTGACGATAACCAAAAAGTTAGTGTTATAAACTTGCCCAAGTCTAATCTTTCCGGGACCTTGAGTCCTTCAATCGCGAACCTTGAAACCGTTACTCGCATTTATCTTGAATCAAATAATCTTTCTGGTTTTGTTCCATCTAGTTGGACTAGTTTGAAATCTCTGTCTATTCTTGATTTGAGTAATAACAATATTTCCCCACCTTTGCCTAAATTTACCACCCCTTTGAAACTTGTTCTAAATGGAAATCCAAAGCTGACTTCTAATCCTCCTGGAGCAAATCCTTCACCAAACAACAGCACAACTCCTGCAGATTCACCCACGTCGTCTGTACCATCTTCACGACCCAACAGTTCAAGCTCTGTGATCTTTAAACCCAGTGAACAGTCACCCGAGAAAAAGGACTCAAAGTCAAAGATAGCTATAGTTGTGGTTCCTATTGCTGGTTTTCTACTTTTGGTTTGTCTTGCTATTCCACTGTACATTTATGTCTGTAAGAAGAGTAAAGATAAGCATCAAGCTCCAACTGCTCTTGTGGTTCATCCTAGAGATCCGTCTGATTCGGATAATGTAGTCAAGATTGCGATTGCCAATCAGACTAATGGAAGTCTTTCCACAGTAAATGCAAGTGGTTCTGCTAGCATACACAGTGGTGAATCCCATATGATCGAAGCTGGGAATTTGCTCATATCGGTTCAAGTACTTCGGAATGTGACTAAGAATTTTTCTCCGGAAAATGAACTTGGACGTGGTGGTTTTGGTGTGGTTTATAAGGGAGAATTAGATGATGGGACACAAATAGCTGTCAAAAGAATGGAGGCTGGTATTGTTAGCAACAAAGCTTTGGATGAATTTCGATCTGAAATTGATGTCCTCTCAAAAGTCCGGCATCGACATTTAGTGTCTCTACTGGGATACTCTGTTGAAGGTAGTGAAAGAATTCTGGTTTATGAGTACATGCCACAAGGTGCACTTAGTAGACATCTTTTCCGCTGGAAAAACTTCAAGTTAGAGCCTCTCTCTTGGAAGAAAAGGCTTAATATTGCCTTAGATGTTGCTAGAGGTGTGGAGTATCTACACACACTAGCACATCAGAGCTTCATTCATAGAGATCTCAAATCCTCAAATATCTTGTTGGGTGATGATTTCCGAGCAAAAGTATCCGACTTTGGACTTGTGAAACTCGCTCCTGATAAAGAGAAATCTGTTGTCACCAGGCTGGCTGGAACTTTTGGATATCTGGCACCTGAATATGCTG..........................................................................................................................................TTACGGGTAAAATCACCACGAAAGCTGATGTATTTAGCTTTGGTGTTGTGCTAATGGAGTTGTTAACTGGGATGATGGCACTTGATGAGGATAGACCTGAGGAAAGCCAGTACTTGGTTTCGTGGTTCTGGAACGCCAAATCCTCTAAAGAGAAGCTTATGACAGTCATTGATCCAACTCTAGACGTGAAAGATGAGATAACCGAGAGCATTTCCACCTTAGCTGAACTTGCTGGTCATTGCACTGCAAGAGAACCTGGTCAACGGCCAGATATGGGCCACGCTGTAAACGTGCTGTCCCCACTTGTTGAGAAATGGAAGCCTCTTGAGGATGATCCAGAGGACTATTGTGGTATCGACTACAGTCTTCCCCTCAATCAAATGGTCAAGGGTTGGCAAGAATCGGAAGGAAAAGACTTAAGTTACGTGGATCTCGAGGACAGTAAGGGCAGTATCCCAGCAAGACCAACTGGATTTGCAGATTCATTTACATCAGCTGATGGTAGATAATGGAGGTACTTCTATGTAGTAGATGTAGATATCAATTTTCTTTGTATTGTATTGAGATTTTGATCGTATTTTCCACGTGCCTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602221" ref_strand="+" ref_description="SGN-U602221 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tacgccaccctcggttccgcgacgacatgccatccgtccccgtcaactttttccggcgactaccgccactttccgatcaaattctctaaagattgttcagtggtgttgttattgtttttttcattattttagccttttagactagtttttcatggttgctctctgtttactttgtgtaaaacatggcaattggcataaaattatttatttaaaaaaaaaaaaaaaaaaaaaaaaaactcaagggggggcccggaaccaaattccccctatagggagtcaaataaaaattcacgggccggggttttaaaaagcgccccccctcccctttaaaaaggtttttttaatttttggggggggctttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="106932" stop="55696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106632" g_stop="106427" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106426" i_stop="105223" i_length="1204">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.411" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105222" g_stop="105197" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="232" r_length="26" r_score="0.692"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105196" i_stop="104841" i_length="356">
            <donor d_prob="0.839" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104840" g_stop="104816" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="257" r_length="25" r_score="0.400"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104815" i_stop="102475" i_length="2341">
            <donor d_prob="0.614" d_score="0.00"/>
            <acceptor a_prob="0.863" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102474" g_stop="102462" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="270" r_length="13" r_score="0.615"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102461" i_stop="99849" i_length="2613">
            <donor d_prob="0.381" d_score="0.00"/>
            <acceptor a_prob="0.860" a_score="0.53"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99848" g_stop="99748" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="371" r_length="101" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U602221" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106632" e_stop="106427"/>
          <exon e_start="105222" e_stop="105197"/>
          <exon e_start="104840" e_stop="104816"/>
          <exon e_start="102474" e_stop="102462"/>
          <exon e_start="99848" e_stop="99748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCCACCCTCGGTTCCGCGACGACATGCCATCCGTCCCCGTCAACTTTTTCCGGCGACTACCGCCACTTTCCGATCAAATTCTCTAAAGATTGTTCAGTGGTGTTGTTATTGTTTTTTTCATTATTTTAGCCTTTTAGACTAGTTTTTCATGGTTGCTCTCTGTTTACTTTGTGTAAAACATGGCAATTGGCATAAAATTATTTATTTAAATTCATTGTTTTGTTTTCTTAATATTGTATGTATATATTTTTGACCGTTGGTGTATTGGGACCAAAAAAATGATAATTGTATACTTTTAAGTTTGGGTTGGTGGGGTGTGTCAAAAAGTGGACCAAATGTTGGATTTTAATGTGAAGTGACCGTTATGTTACTTGCATCTGAAAAAGAACAGAACAGGCATATTGTTTTTAGAGTTAATTGTAAAAAGAACAACTTATAGTTAGAGACATGAAACTCGTAAAACGAAATTATATTTATCGAGACCAATAAAGGACATTAGAGTAGTATATAAAGGTCGAAGGTGAAAAAATGGTATTGAGAAGTTGAGGTTGTGGTTAAATATGGATTTCCACTTCTTATCGAGGAGTTAGAGTTGATTCATGCAAGTCAGAGTAAGGAATTATCCACTTTATCGCCCCGAAGAGCAGCCTACAAAGAAAGACTCCAAAAAGTACCAAATGCTTAATCTTCAGTGTGTAAACATCATAACCAAAAAGTTCCAATCTTTAAATTCCTATGATTTTGCATAAATATATAGCAAAAAGACATCTAATTTCTTATATATGCTAATGTAGCCAAAGGTTGAAGGAGAATACTGCACAAGCAAGAAGGGCATACTATTAAGGTCATCAGTCCCAGTATTTCTACTTCCTGTTTCCGCGAGGCAGAGAAGAAACACGTTGCTCTTATGGCTGTCGTTGATGCTTTGTATTCTGCGAAAAAAAGCAACAGAAGAAAGCTTCTATTGCTGCCAAAGGATACGCCTTTACATCAATCTTTATTGCAGAGTTGTTGTTCCTTCTTGGAGACTAGTTCGCGGGAGGATCCCTCACTTGCTACAAATCAGATGTCGTATAAACCAAGAACGAGTTGCTCCTTGTATAACTCGAGATGAAGGCTTTTCCAGCTGAGGTTGGCTGAGAATAGGCTAACTCGGACTGTTTAAGAACTAAATCCTTGCAAAAACTTTCCCTGCATTAGAAAATGAGAAGCAAGTTCAGACTAAACTTAAATCATAAGCAATCCATATATACGTGGAACTTTGGCGTTCCAGACAGCAAAATATAACAATTACTTCGCAGATAACAGTCATGCAATGGAAAGTAGACTGAAGTGTTAATATAACTACAGATTTTGTGCATCCTCTATTGTATCTGAAAGTGCATCTTCATCATATTCAATAACCAGATTGGCCAAAAAAAACTAGAAAAAAGGTTCATCTTTGTTGAAGTCTGTCTATGTATGGTTCTTCTGTTGCCTTCAAAAGTTGTGTCATTTCCTAGAGTCCACCAAATGGCTTGAGGAATGGTATTCTAAGTCTTCTGTGATTTCTTGCATAACCATCCTTTGTTACAGCATAGCTCAAAAATGGATTTTGACATGCCAAATATTGCCAAAAAGATGCATCATAACTGACTAGTAGCTGCAAAGCTGAAATCCCTTCTTTTGGAGGTTGGACTGAGTGAGAAAACCTTCCCTGGTGAACTCCATACTTGAGCAGTTTCTAAGCAACATCCAATCTTTCATCTTGGTGTACGTCTACACATGAGGATACTTTTCTTTATAACAGAGAAATTTCCAAAGGGCCAAGTGGTGCATAGCTTGAAACTCAGTGAATAATGCTCCCTACCCCCTCTACGTCCCTTCTCATCTTAAGAGACTATTGATGCTCAATTACAGAGATTACAGTTACTTCAGTATGACTGCAGACATCAGACTTTATCATTTGGCAATTGAGATAGAGAACTAAACATCACATTATGAAAGGAAATACCACTCAAGTACCCCAGAGATCCTTTGAAACTGATAGCCAAGGATGGTTGCATCTTGTATCCTCTATTCTCCTGTAAGCTTGACTAAAGCATAATCCTTCCCCAAGGTTGAATCCCCTTTATCACCATTGACAGCTTAATCACATCTGAATTTAAAACTGCTACACGTTGAATATAGGAAGAAGTGGACAAAACCTTCTTAATCATTAAGAAATGGACTTTGGGCTTAACTCCGCTCCAAAAGCTAGCTCACGAGTGAAAATTGCCCAAGATCATAAAAGGAGGCAAGAGTTCATCCCTCCACTGATGTGGGACACTTAACGGTAATCATCTCTAAACCATCTTGATAGTACTCAATTATATCCCTCAAAACAATTTCCTTATCAAGATAATTTTTGCGTGGAAAGACAAGACATATTTGGTATTACAACGCTTTAACTTTTGTACCATATCTACTTTTACAAAGCATTATGTCTGAAAGTGTAATAGCACGGGAGTGTAAAAATCTTTGGTAAACTTTAAAAAGTTGGAGAGGTCTTGATCTTGAGAAGCACCACAGTCCATACACAGAGTCTCAATCATGTATTCCAGCAGCAGTGAGTGCTACACCATTCTAATTTTGCAATATAGATAGAGTACAATGTAGTACCCTAGTAGGATCTTCTCATACTATATAGATAGAGTAACCATTCTGACCTAGTGAATACCACCAGGACCCGTTTCATAAATTATCAAGTGTGAGTCGAGAAGAACTCAGCTGCAAATCCACAAAGACACTTACCAAGTCAATGCATCAGACTGCTTACTCTATGAGAATTAGGTCTGTTGATCTGTGACAGTTGCTTTCCTTCTTTTTCCAGTGGTCGTGTTTCTCAGACATGAACTTTTTGTTTCCAATTGAAACTAATAAGAAGCAATTACTAGTTTGAACATCTAACTTTCGTCATTTTAACTTCACTGACTACTGAGCATGCAACTTATTTTCAATTAAAACTTCAAGAAACCATAACAACTCAGAGAAAGTGAATGGTGTTACCTAACAGCATCAAGTAAATAGCTGGCGATATGCTTTCTTCTGTTGGAGGGAGTGACCCAAATGGCTCTAATGCCACATAAAGCAGATACAGATTCCTTCTCACACAACACTACTCCACTGACGCTTTCATCAAACTCTTCACAGCTTTTGGTTGGTTGATTTCTTCTTACCATCTCCCTCTGGAAACTCACTCCCCCAAATTGGAGCGTGGTTGAAGTCTGTCTTGCTTCCTTCTCAGGTGAGCCATTACACCTGCTACCTTCTGGCCTAGAGAGTAGCTTATAAGCCCTCTTAATGGGCTCTGCTACCAGACATCCAGATATTCTTTGAGAAGATATAAACAGATACACCTGTTAAGGAAAAATGTTTCAGAGTTCCATTCACAGAGCTAGTAAAATACAGCCAGTCACATAACCACCACACAGAATTTTTCTCACTAAAATTAATCAGCAAAATGGAGACTGACATTTGTCATAGGACGATTAAGAAGCTCATTGAACTCAAGTAACTTACAATTCACATTAAAAGATAAAATGAAGCAAAGAGTAGGAAGCCGGAAATTTTAAATTTGCTAATAATTGGTGAACAACTTTGGACAATGAATTTTGTTTTCTATGACCATAAGTTTATTAGAATTGCAAGAGTAGGTTACCTTGCATAGCTGATGATATATCCACCCATCTCCAAGTTCCATCTCCATCATCTTCACAACTTCCTTTACCTGCCAACAATGCACTCTCTCTTAAGTCTGTAAACTATGTTTAACATGAATAACTAGAGAAATGCCAATCAAGGAAGTAAAGATACAGTTTTTCATGCAAAAACAAATAGTGTTTGTAAACCTTGTTTTTCTGAGGAGTAGGGTCATCGTCCAGCACCAAGATAATTCGCCCAATTTCAAGTGAAGGAATTTGAATAGTTCTTTCATTCCGCCAACCCTGGACATTTTGTCAAAGCCCGGAGGGACAAAACTTTAATGTTATTTCATCAAGCACAATAGAATATTTTGAAATACCAAATTTTTGTTACTGAATTACCTTCAATGGAATACCATGCGTATAATTCTTGTGAAACGTTTTATGAAACTTTTCATCCTCTTCATCACCTTTGGCATATTTGAATCCACAGATAGTACAACTATGTAATAAAAAATCAGACTGCCCGAGTTCCAAATAGAATTGGGCATACTTTCTCTTCTTATTCAATATCTTCCCAGACTTTGCCACCTCCAAGTTTGGCACCTCCAAGTCTATTTGCTTGGATGCTTCACCAGTTGATGTGCCATTCATTTGCCTGCAAAAATCAGCTTAGCATAAGCAAAGAACTTGAAGAAAAAATAAGAAACGTCATCAATGTTCTGTTAAATAGTAACAACTCTGAGATACAATTCTAGTCAAACACATGGCTAAAGCCCCAGTTTAGCAGAAAACCAATTTGCTTGAGAAAATGACTTAAGAAAGACCGAGTAATGATCAAACTTATATACTGAAAAGCATTCAAGTTTAGTATAATGGTGTGATTTTAAGAAACTGCCATGAATCGTTTCCCCTTATTTGCCTTAAGTGACTATGTTTCTTTACAATACTTATTTCACCCTTTTGTCTTATAGACAAGTTAATTGAAAGCCGATGACAGACACGATGAACAACTATGTGTTAGCTCATTTATATAAATAGTCCATCGTCTCCATTTTCCTTTACTTCAATTCTCACTTATTTAAACTGACAAAAGAGCAGTAAACCACATACTCAGAGACAAAAACACTAAGTGATTTCTTCCCATATGTCTGATAGACAGAGTTATCTGGTAACAATGTTGGTGAGAGGTAGCAGGTACCCCTAAAGAAGTAGTCAAGTTGGGTGCAAGTTCACACAGACACCACAATCATCAAAAAAAAAAAAGGAAGAATGACTAGCAAACCACTATCGTTGAACATTCAACGAAGCTCTCCTACAACTAGGTGTAAGGTAAAATTCGAACAAAACAGCAATACCAGCGAAAGATAATCCATAGAGATGTCCAAAAGCAAAACTAAATAAACTACAGACAATTTGGATTTAAACAATACTAGCAAATCACAATTGAGGATGTAGCTAACAAACTACAACTTCAATTGAACCAAGTCCTTCAATACAAAGATTCAAATTTTCCATAAACATTAATAACTCCGTTTCAATTCATTTATCGTACTTTCCTTTTTCAATTCGCTTCAAAAAGAATGAATCTTTACTTACTTTTTAGCAATTTAAACGACATTTTGGTACATTACACATATCTCAATTCAACATAGCCAAAAAAAAACACAAACAAATCAAAAAGGGTACTTTTGATCAATAGTTCGAAATCATAAAAATTAAACCCCTCAAATTAAAATTCTAGATCCGCTACTGCTACCAATCAAACACTTCCCATAGCAGCATTCAAAGGGTATCTATGTATGTACATCAGAAGGGGGGGGGGGGAAACCCAATTCAATGAAATGAAACAGAAATTAAGTGAATTTAAACCATACCCATTTGGATTTTGAGGTCTTCGCTGGTATGTAACCAAAATTTCTGGCTGTACCTTCTTATACTCAAAATCATCACTGCAGATTTGAGATGAATCTACACTTTTGTGCGTAATCGATGATGAAGAAGAAGAAAATGGCTTAAAGAAGCTGTTAATCTTCGATTGCATTGCTAAAATCTCACTGATTTCTTCGATTTCCCTTCGGCCCTTTTTCACATTACATATGAAAATTTTGGTGTAAGCGCCATTTTTCTACAAGATTTTCCCGCCTTAATTAGCTAACATGATTATAATTTGAATTAATTATTACTCGTGGACTATTTTTAGGTATATATGTATATATGTACAATTATATAATAGATATATAAATATAATTCGCTTCTCTACTTTCTCTTTGAATCTAACTTGTCGAATATACAGATACATACATATATATATATATATATATGCACAATTCAACATATATATACAATTCGAATTATATGTGAAAAAATCAAATTAAATTTTTCGTTTTTGAATTTTAATTCTATTAAATTTGGATTGAGTTAGATTTTTAAGGTTGGTTTTGACTTTTGGAGTCTTTAAAGCTAGTCATAACAATTCATTTTCTTAAAAAAATGTCATGTCGTTAAAAACTTTTCTCGGATACCTACATAGAAGAATAAAGAATTTAAGGCATAAAAAGCTATCAGCGAACGCGTTAATTGAGTAAAAATTATGTGTCTTCTTATTTATTGTTAAAATTATTATATTATCCCTTTCGTTTGATTTTGTTTGTCCATTATTTTTAAAAATATATTTATTTCTTTTATTTATTACTTTTACAATATCAAGAAAAGACAAATATTTTATCATACTGAAAAAAGTCACGTCCTTGAAAAAATACTTCTCAAATACCTAAATAGAAAAGCAGAAAATACAAGGCATAAAAAGTTATAAGCGAACGCGTTTTACAAGTAAAATTATGCGTCTTTTTATTTATTGTTAAAATTATTATATTACCGTTTCTTTGAATTTTATTGTCCACTATTTTAAAAAATATGTTTATTTATTTTATAAATTACTTTTATAAAATCAAAAAAAGATAAATATTTTATCTTTTTAAAAAATGTAATGTCGTTGAAAACTTGAAAATTTGTTTCTCAGATACCAAGATAGAAGAGCATCGAATATAAAGCATAAAACGCTATCATTGAAAGAGTTTTACGAGTAAAAATTTTGTGTCTTGATGAACTACTTGCAGTCGAACTCGAATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TACGCCACCCTCGGTTCCGCGACGACATGCCATCCGTCCCCGTCAACTTTTTCCGGCGACTACCGCCACTTTCCGATCAAATTCTCTAAAGATTGTTCAGTGGTGTTGTTATTGTTTTTTTCATTATTTTAGCCTTTTAGACTAGTTTTTCATGGTTGCTCTCTGTTTACTTTGTGTAAAACATGGCAATTGGCATAAAATTATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................AAAACTCAAGGGGGGGCCCGGAACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCCCCCTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGTCAAATAAAAATTCACGGGCCGGGGTTTTAAAAAGCGCCCCCCCTCCCCTTTAAAAAGGTTTTTTTAATTTTTGGGGGGGGCTTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584382" ref_strand="-" ref_description="SGN-U584382 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157354457|emb|CAO47083.1| (e_value=1e-18) unnamed; (*ATH) AT1G80245.2 (e_value=5e-18) | Symbol: None | expressed protein | chr1:30179070-30180434 FORWARD | Aliases: None; ">
      <seq>gaattgaagatgtcggtggctttgttccttaaccgaatctgagcttgatttattgataggtttgaaagttctgatacaacaacgtgccaaaaagattggtcacaagtctttagctaacaagtttgatttgaagacccttcgagccctcagtttcgttttgatggagaatcttaaaggaaaacttagagatctctccggtacacctgatacagccgagttctcatcaactttagatgcatgtaatttgttgaattatgttcgagacaagacttttgcaaatatgggggttgaacagctgagctcctacatttgcaacgacaagaggaagagaattttggagatgttttctgaagacatggctccaaatagaaagcagaggagttaacagtgacaacagtagatccatgtagcaatataatttaattcctaaaatgtaatattcaaattttgatgttagggaatattattttccatttttgctttcattttttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="117539" stop="114361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117239" g_stop="117193" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117192" i_stop="117112" i_length="81">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117111" g_stop="117009" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="149" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117008" i_stop="115687" i_length="1322">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115686" g_stop="115494" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="342" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115493" i_stop="114815" i_length="679">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114814" g_stop="114661" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="496" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-U584382" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584382" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="117239" e_stop="117193"/>
          <exon e_start="117111" e_stop="117009"/>
          <exon e_start="115686" e_stop="115494"/>
          <exon e_start="114814" e_stop="114661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGAAGATGTTCGGTGGCTTTGTTCCTTAACCGAATCTGAGCTTGTAAGTTATCTCTGCTCATTTTTTCCTTTTTCTTTTGGGTGATGACCAATATCTTATGCGTGATCTGGTTGAATTTTTTAGGATTTATTGATAGGTTTGAAAGTTCTGATACAACAACGTGCCAAAAAGATTGGTCACAAGTCTTTAGCTAACAAGTTTGATTTGAAGACCCTTCGAGCCCTCAGTGAGTTTTTTCTTGCTCCTCTCCATAAGTTTGTAACATTTATTCATTACTTGAATGGTGCATCATCTATAAACTGCTGTTTGCTGTAAAAATTGGTGAATTCTTTGTCTGTTTTTACGTTCTTTCAGATGGATAGTAACTTCTGTTGTAAAAAATATTGTTACACTTGAGCTCGATAACGAAAAAATTGCACATTTATAGCTAGTAAAGAACAAGGGAGAAGGAAAGAATGAAATCAGAAGATAAGAAGAGGGGTTATGAGAGGAGAGAACTCAGGTTTTCAGTCATTACATCTTTATAATACTTCCAAATATAATTTAAAGAAAGATAGGTAAAATGGGCAAACAAGTCGGAGATGACATATTAGAGGGTTCTAGAAGGCTTAGTATGTACTAGGAGCGTCTTGAAAGAGCGTTTATCTATGAAGAGTGTTAATGGAATCATAAGCATCCATGAGGGTGACAGGGTTGGCTATCCTCACTAGAGACTTGATTCTCTTGTTTCTATACATTGACAAATCAAGTTACAAAGTGTAATTCTGCAAGATAAAGGTTAATCATCATCATTTTGGTTGCTCCTTATAACTGTCCACATTTCCACATCGCTGAAGTTTATTGAACTTATATATAAAATCGCTAAACCTCCCGAACATTAGCCAAGATAGAACATCCACTGGGAATCCTTTAAGTGCTCATTAAATCAGTAATTAACTCGATTCATTACTTGTTAAACATAATTCAGCTTCATCTATCTAAGAATTTGATTGGTTTCAAAATATTTTCCTTTCCTTCTAATCCAGCCCTCGGATTGATGCCACCAAATTCAGGAAAATAAAGCTTCATTTTCGGAGCTTCTGTGCTGAATAGGGGATGTGATTTGGTACTGGTTCAATCACAGAAGCGAGAAGCGGGGTGAAGTAGTAAGCACAGAGCAATTACTGCTTCTTCTTATAAGAAGATAAGAAGAAGAATCATAGCTTATACATAACTTGGTATTTAGAAACACAATATATTTTTTCACATTTCTTAAAAGTTGCTTCTTCTTGTGTTGTGTTGTTTGTCCTGCATGAATATCTTGCACTACTCTAACTTCAAAAAACTTTACCATATATGCCTTAATGCGATCAGGTTTACTCCCCTGGATATTTTGCAAAACAATTCACATAATCACACCTGTTTTTCGGCTGCCAAGGCTTTAACCTTACCAAAGTCTTTTTCAGTGTAACTATTACTCTTAGTTATAACTTGCAAAAAGAATCCATGTAGTTGACATGTATCACACGTTGGTTTAACTGAAGTTTTGATCACTTCACTATCTGGCAGGTTTCGTTTTGATGGAGAATCTTAAAGGAAAACTTAGAGATCTCTCCGGTACACCTGATACAGCCGAGTTCTCATCAACTTTAGATGCATGTAATTTGTTGAATTATGTTCGAGACAAGACTTTTGCAAATATGGGGGTTGAACAGCTGAGCTCCTACATTTGCAACGACAAGAGGAAGAGAATTTTGGAGATGTAAGTTCTCTAGAACTCATTTAATCATTACCCGTAAGTTGATTTATGGATCATATTGGATATTATTCTGAAGTCATTCTTCCGGTCCATCCTCGCCTATGATTCCCCAACTTGTAGATATCTCAGTTGAGACAAAGATCACTAGGTGATTTCTTCTCGTTTGTCTAAGTTTTGGTGGACAAAGTTACGTGGTACCTGTTGGTGGTGGGAGGTAGTAGGTATACCGTTGAATAACCGAGGTGCACGCAAGCTGGCTCCAGATACCACGATTATAAGACAAAAAGCATAACTTCACGATTCATGCATTTTTTGAGCAATCTCATTTTCTGAAATTTAATCAGATACGCATAAAACTTTTGGTTTCCTCGATACGTTAAGTCACATTATATTCTATAGTTTATAGGTCTGGTAAAAAAAAAATTATCTCCCCTGGTGTCTGGTTATCCTCAGGGCCGCGACTAATTCAGATTCATGTTGTGTAAGGCCCATTCCAGAGGGAAGCACTCCTTTTCATGGTTTTTTCTATTCTCAGGGCTTGAGCCTAAAACCTTTGGTTATACGTCTTGTAATTGTACTCTAGATATCGGGCATTTCGATATTATTTTTCGTCTTTTCGAAGATACATGATTTCAGACCTACACTGCTTGTGTAATTTTGAACTATATTATGTGTGCTGTAGGTTTTCTGAAGACATGGCTCCAAATAGAAAGCAGAGGAGTTAACAGTGACAACAGTAGATCCATGTAGCAATATAATTTAATTCCTAAAATGTAATATTCAAATTTTGATGTTAGGGAATATTATTTTCCATTTTTGCTTTCATTTTTTGAACT</genome_strand>
        <mrna_strand>GAATTGAAGATG-TCGGTGGCTTTGTTCCTTAACCGAATCTGAGCTT.................................................................................GATTTATTGATAGGTTTGAAAGTTCTGATACAACAACGTGCCAAAAAGATTGGTCACAAGTCTTTAGCTAACAAGTTTGATTTGAAGACCCTTCGAGCCCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTTTGATGGAGAATCTTAAAGGAAAACTTAGAGATCTCTCCGGTACACCTGATACAGCCGAGTTCTCATCAACTTTAGATGCATGTAATTTGTTGAATTATGTTCGAGACAAGACTTTTGCAAATATGGGGGTTGAACAGCTGAGCTCCTACATTTGCAACGACAAGAGGAAGAGAATTTTGGAGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTGAAGACATGGCTCCAAATAGAAAGCAGAGGAGTTAACAGTGACAACAGTAGATCCATGTAGCAATATAATTTAATTCCTAAAATGTAATATTCAAATTTTGATGTTAGGGAATATTATTTTCCATTTTTGCTTTCATTTTTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572150" ref_strand="+" ref_description="SGN-U572150 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gaaatggctctgtttttttcccttttttttcatttttcatgtgtttggtatgccggaaattgatgtattagttgccggagtttgagaaaagaagtcccttttcccctttttgtgtaatttcatgtattgggtttgttgggtgttgacggatttgttgccggagtttgagagaagaaaactcccttatcccctgtttttttttattttttacttgttggatttgccgggaattgacgtattggttgccggagattgaaaaaaaaactcccttttccccttttgtaatttcatgtgttgggttagctgggcgttgacgtattaattgccggagtttgagagaagaaaactcatttatcccctgtttttccatttttttacttgtggggttcgccgggaattgacgtattggttgccggagttcgaggaaaagcacccctttttttatctgattcagttattgggtttgcaggggattgcgtgttagttgccggagttcgagaaaaaaaaacaccctttttcacctgattcagttattggttttgccgggaattgcacgttagtacccggagttcaaaaaaaaactccctttttcagctgattcagttattgggtttggaaggaattgtgtgttagttgccggagttcaaaaaaaaactccctttttcagctgattcagttattggttttgccgggaattgcgtgttagttgccgaaatttgggtgtattcaccttcctagcatatctcacttgtttggttcactggaaattgacgtggtattcgccggagcaatggtggaaggcggtgcaggaccagagtttccggtggtattttacgacggagaaagagagatgaacatcggaagtatacgcatataccctttactagaattcaaagcatttcaattaatgttaagccaaagaatcggaatctcaccaaatcagatttcaatttacttgtgtgatcggaaaacctcaaagttcgaagatcgacgacgaatccccatcaccggtaaagctaatttcagtttaattgctcgtgaaatagactgtttctttctcgtggttctaaaacggtcgcgaaaatcacgtaatcgtaagattataaaacccggtggtggattcgttacggagaatgaatcgttctcctccgtaaagccaccgccaccgggtaatcccattctcctccgacgaacccacccgaatcaattcgggtcaccgtttttcgatcaaatttcaccgttagaactcgaaaatttgaacgataagttgcagagtttgaagattcagagagacgattacaattactccatgggtgtatcctcaattccgatgcatcggaataatccatttccgaggatacaagatacgtttccggtgaagatgaaagctaaatgtgagcaatgcagaaagggtaataatggaaatgaagaaatacccagttttcatcactgcaagaatgatccggtgatcgtcggagtttaccggagccggtttggaccggtgtcaccggccggtttttgttagtttaccggcggtttaattgcacacggttttttttttggagcagaagagaaggaatctgctgcatttgtggtatatggcaaggaagatgtaccataatattagtttataattagggaagtgattaaggaaattggattagtttgccactaaataagttttttttttttgttaaatataaaatagattatttactatattggttattttgggagtttgatgaaatgtaatatggagaatttttccatgaattgaatttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="141398" stop="143777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141699" g_stop="143477" g_length="1779"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="1786" r_length="1779" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U572150" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>1779</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141699" e_stop="143477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTTTTTTCCATTTTTTTTCATTTTTCATGTGTTTGGTATGCCGGAAATTGATGTATTAGTTGCCGGAGTTTGAGAAAAGAAGTCCCTTTTCCCCTTTTTGTGTAATTTCATGTATTGGGTTTGTTGGGTGTTGACGGATTTGTTGCCGGAGTTTGAGAGAAGAAAACTCCCTTATCCCCT-TTTTTTTTTTTTTTTTACTTGTTGGGTTTGCCGGGAATTGACGTATTGGTTGCCGGAGATTGAGAAAAGAACTCCCTTTTCCCCTTTTGTAATTTCATTTGTTGGGTTAGCTGGGCGTTGACGTATTAGTTGCCGGAGTTTGAGAGAAGAAAACTCATTTATCCCCTGTTTTTCCATTTTTTTACTTGTGGGGTTCGCCGGGAATTGACGTATTGGTTGCCGGAGTTCGAGGAAAAGCACCCCTTTTTTTTTATCTGATTCAGTTATTGGGTTTGCAGGGGATTGCGTGTTAGTTGCCGGAGTTCGAGAAAAAAAAACACCCTTTTTCAGCTGATTCAGTTATTGGTTTTGCCGGGGATTGCACGTTAGTAGCCGGAGTTCGAGAAAAAACTCCCTTTTTCAGCTGATTCAGTTATTGGGTTTGGAAGGGATTGTGTGTTAGTTGCCGGAGTTCGAGAAAAAACTCCCTTTTTCAGCTGATTCAGTTATTGGTTTTGCCGGGGATTGCGTGTTAGTTGCCGGAGTTTGGGTGTATTCAGCTTCCTACCATATCTCACTTGTTTGGTTCACTGGAAATTGACGTGGTATTCGCCGGAGCAATGGTGGAAGGCGGTGCAGGACCAGAGTTTTCGGTGGTATTTTACGACGGAGAAAGAGAGATGAACATCGGAAGTATACGCATATACCCTTTACTAGAATTCAAAGCATTTCAATTGATGTTAAGCCAAAGAATCGGAATCTCACCAAATCAGATTTCAATTTACTTGTGTGATCGGAAAACCTCAAAGTTGGAAGATCGACGACGAATCCCCATCACCGGTAAAGCTAATTTCAGTTTAATTGCTCGTGAAATAGACTGTTTCTTTCTCGTGGTTCTAAAACGGTCGCGAAAATCACGTAATCGTAAGATTATAAAACCCGGTGGTGGATTCGTTACGGAGAATGAATCGTTCTCCTCCGTAAAGCCACCGCCACCGGGTAATCCCATTCTCCTCCGACGAACCCACCCGAATCAATTCGGGTCACCGTTTTTCGATCAAATTTCACCGTTAGAACTCGAAAATTTGAACGAGAAGTTGCAGAGTTTGAAGATTCAGAGAGAAGAATACAATTACTCCATGGGTGTATCCTCAATTCCGATGCATCGGAATAATCCATTTCCGAGGATACAAGATACGTTTCCGGTGAAGATGAAAGCTAAATGTGAGCAATGCAGAAAGGGTAATAATGGAAATGAAGAAATACCCAGTTTTCATCACTGCAAGAATGATCCGGTGATCGTCGGAGTTTACCGGAGCCGGTTTGGACCGGTGTCACCGGCCGGTTTTTGTTAGTTTACCGGCGGTTTAATTGCACACGGTTTTTTTTTTGGAGCAGAAGAGAAGGAATCTGCTGCATTTGTGGTATATGGTAAGGAAGATGTACCATAATATTAGTTTATAATTAGGGAAGTGATTAAGGAAATTGGATTAGTTTGCCACTAAATAAG--TTTTTTTTTTGTTAAATATAAAATAGATTATTCACTATATTGGTTTCTTTTGGGAGTTTGATGAAATGTAATATGGAGAATTTTTCCATGAATTGAATTTTTCAT</genome_strand>
        <mrna_strand>CTCTGTTTTTTTCCCTTTTTTTTCATTTTTCATGTGTTTGGTATGCCGGAAATTGATGTATTAGTTGCCGGAGTTTGAGAAAAGAAGTCCCTTTTCCCCTTTTTGTGTAATTTCATGTATTGGGTTTGTTGGGTGTTGACGGATTTGTTGCCGGAGTTTGAGAGAAGAAAACTCCCTTATCCCCTGTTTTTTTTTATTTTTTACTTGTTGGATTTGCCGGGAATTGACGTATTGGTTGCCGGAGATTGAAAAAAAAACTCCCTTTTCCCCTTTTGTAATTTCATGTGTTGGGTTAGCTGGGCGTTGACGTATTAATTGCCGGAGTTTGAGAGAAGAAAACTCATTTATCCCCTGTTTTTCCATTTTTTTACTTGTGGGGTTCGCCGGGAATTGACGTATTGGTTGCCGGAGTTCGAGGAAAAGCACCCC--TTTTTTTATCTGATTCAGTTATTGGGTTTGCAGGGGATTGCGTGTTAGTTGCCGGAGTTCGAGAAAAAAAAACACCCTTTTTCACCTGATTCAGTTATTGGTTTTGCCGGGAATTGCACGTTAGTACCCGGAGTTCAAAAAAAAACTCCCTTTTTCAGCTGATTCAGTTATTGGGTTTGGAAGGAATTGTGTGTTAGTTGCCGGAGTTCAAAAAAAAACTCCCTTTTTCAGCTGATTCAGTTATTGGTTTTGCCGGGAATTGCGTGTTAGTTGCCGAAATTTGGGTGTATTCACCTTCCTAGCATATCTCACTTGTTTGGTTCACTGGAAATTGACGTGGTATTCGCCGGAGCAATGGTGGAAGGCGGTGCAGGACCAGAGTTTCCGGTGGTATTTTACGACGGAGAAAGAGAGATGAACATCGGAAGTATACGCATATACCCTTTACTAGAATTCAAAGCATTTCAATTAATGTTAAGCCAAAGAATCGGAATCTCACCAAATCAGATTTCAATTTACTTGTGTGATCGGAAAACCTCAAAGTTCGAAGATCGACGACGAATCCCCATCACCGGTAAAGCTAATTTCAGTTTAATTGCTCGTGAAATAGACTGTTTCTTTCTCGTGGTTCTAAAACGGTCGCGAAAATCACGTAATCGTAAGATTATAAAACCCGGTGGTGGATTCGTTACGGAGAATGAATCGTTCTCCTCCGTAAAGCCACCGCCACCGGGTAATCCCATTCTCCTCCGACGAACCCACCCGAATCAATTCGGGTCACCGTTTTTCGATCAAATTTCACCGTTAGAACTCGAAAATTTGAACGATAAGTTGCAGAGTTTGAAGATTCAGAGAGACGATTACAATTACTCCATGGGTGTATCCTCAATTCCGATGCATCGGAATAATCCATTTCCGAGGATACAAGATACGTTTCCGGTGAAGATGAAAGCTAAATGTGAGCAATGCAGAAAGGGTAATAATGGAAATGAAGAAATACCCAGTTTTCATCACTGCAAGAATGATCCGGTGATCGTCGGAGTTTACCGGAGCCGGTTTGGACCGGTGTCACCGGCCGGTTTTTGTTAGTTTACCGGCGGTTTAATTGCACACGGTTTTTTTTTTGGAGCAGAAGAGAAGGAATCTGCTGCATTTGTGGTATATGGCAAGGAAGATGTACCATAATATTAGTTTATAATTAGGGAAGTGATTAAGGAAATTGGATTAGTTTGCCACTAAATAAGTTTTTTTTTTTTGTTAAATATAAAATAGATTATTTACTATATTGG-TTATTTTGGGAGTTTGATGAAATGTAATATGGAGAATTTTTCCATGAATTGAATTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574402" ref_strand="+" ref_description="SGN-U574402 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>aatggagaattcttcttcggaaaatcttgacgatggagagttatggctaccttctgatatttttccagtagaagaaactgtttcttctgctaataataagctcaaaaacaacaaccccattgcttcttctctttgctgttgttactcttgtgttcttcttcttcgtcatcctcataactccattttcatggctgaacaacaagttctacagagtgttccaaagccatttcccataactgagcggcggttcagaccggctgagaggtgttgcacctgtacagattgttcaatttcagactattttgaacggagtagaagagaaacaaccggtccaccaccggtttatccaccggttcaacttcaccaccagggttgagagtttgatggaagttagagctccatttttacagaaggaagaacagagccggttcatcgggattcagagaagaaacctcggcctgaaccggttcgccggtaactgggtttcgccgtttgtgggtttcggtggcaatggctgtggttttaatggtgaaagtagttctgtgagagattatggtggaactggtgtcttcctccctagaatacctagcaacatcaacaacaatggtggaaagaaaaaaggtggtagaaataggcaagatgttcaacaaactgatcaaagatatccatgcatatgagaaatggcaaaaacctaaagaattggacctaatggatatatagtaatttggtcattagatatagtaatttggtagatttaaataattgaacttagcatatgggttatgtgtgtaatttttatctaattgtcaattgcctttttgagggaaaatggtgatatattttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="146460" stop="150491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146760" g_stop="147000" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147001" i_stop="147451" i_length="451">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="147452" g_stop="147580" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="371" r_length="130" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="147581" i_stop="147660" i_length="80">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147661" g_stop="147910" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="621" r_length="250" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="147911" i_stop="149966" i_length="2056">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149967" g_stop="150191" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="846" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U574402" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146760" e_stop="147000"/>
          <exon e_start="147452" e_stop="147580"/>
          <exon e_start="147661" e_stop="147910"/>
          <exon e_start="149967" e_stop="150191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAGAATTCTTCTTCGGAAAATCTTGACGATGGAGAGTTATGGCTACCTTCTGATATTTTTCCAGTAGAAGAAACTGTTTCTTCTGCTAATAATAAGCTCAAAAACAACAACCCCATTGCTTCTTCTCTTTGCTGTTGTTACTCTTGTGTTCTTCTTCTTCGTCATCCTCATAACTCCATTTTCATGGCTGAACAACAAGTTCTACAGAGTGTTCCAAAGCCATTTCCCATAACTGAGGTAAAAGGGGTTTTCCCATTAAATCTCTAATTATTTGTTACATTAGTAGTTTAGTACTGGCATTTTGCTCTGTTTTTGTTTTTGTTTTTTTTTCGAATTTCGCCATTGTTGTAGATGTTCAAAGCTTCTTCTTCATTTCTACTTACTGTTTTTCCATAAGCTAAAAAACAACCCCATCGGTTCTTCTCTTTGCTGTTGTTACGCTTGTGTTCTTCTTCTTCTTCATCATCATCATAGCTCCATTTTCATGGCTGAACAAGTTCTTCACAGTTTTCCCAAGCCATTTCCCGTTGCTGAGGTAAAAGGGGTTCTCCATAGAATCTCTAGGTTTTCGTTACATTAGTACAGCGTTTTTGCTCTGTTTTGTTTTTTTTCTTCGAATTTCGCCATTGTTGCAGAGGTTCAGACCTCCTTCTTCATTTTTACTTACTGTTTTTTCTCGATATTGCAGCGGCGGTTCAGACCGGCTGAGAGGTGTTGCACCTGTACAGATTGTTCAATTTCAGACTATTTTGAACGGAGTAGAAGAGAAACAACCGGTCCACCACCGGTTTATCCACCGGTTCAACTTCACCACCA-GGTAGAAATCAAAATCTAAACAAAATGGGTTTGATTTTCATCGAGTTATTTCTCGATTTTTCAATTTTTGTTTCTGTATAGGTTGAGAGTTTGATGGAAGTTAGAGCTCCATTTTTACAGAAGGAAGAACAGAGCCGGTTCATCGGGATTCAGAGAAGAAACCTCGGCCTGAACCGGTTCGCCGGTAACTGGGTTTCGCCGTTTGTGGGTTTCGGTGGCAATGGCTGTGGTTTTAATGGTGAAAGTAGTTCTGTGAGAGATTATGGTGGAACTGGTGTCTTCCTCCCTAGAATACCTAGCAACATCAACAACAATGGTGGAAAGAAACAAGGCAAGTCAATCATATCCTCGAGTTACGTTGCTCGGATTCTTCAAAAACGTTGACGGATGCTTGTCGAATTCAATAACGATAAGGATGTGTTGACATTTTTGAAGAGCGTGAGTAACATAATTGTTTTGAGTTACTAATCTCTTATTTTTTTGAATATTATCCATTAATTGTGGGTTATCTCGATTAATGAGCCGAGAGGTCGATCATATCTTCTTCAAACCTCACTTATGAAAATATATATGTTGCTACATTACACTACATTCAATGTAGAGATAACAATGAGACGGATTTCGACATGCTTTGCCTCGTTTTGCATAACATTATCTCCTGGTCTCTATCTGTCTCGCCTCGTTGCCATCCCTAGTTCAATGTGAATACACATGCCCTAGTCTTAGTTTAAAAGCTCAACAAGTTGAAAAACATTGTCATCACATGCTAAACGCTACTCTTTTCGTTATTCTTTCCGTTTCAATTTGTATGAATGATTTTAGTTTGACTAAGATTAGTAATCAAAAAGAACAAAAGAATAAAGCTTTTGTCATGTAAGTTTGTATAATAGGGTATGACATTTGGCAAGAGGGGGTTTTGCTCATAAAGTAAGTGTTTTCTACTTTTTGATCTTAAAGTTGTGGGCTTGAATCTTAAAGTGAACGAAAAGGTGAGTGGTGAAATTATTTAAAATGAAATTCTAAGTTAAACTTACACTTATCTTGACTAATTTCACGATAGGTATTGTATAATTCTATCTATCAAATCTAGGATAGATTGTGTGGTATACTAGTATGAACAAGTGTAACATGAATAGATTGTTGTAGTCCGATCCTCTTTCGAACTTTGTTCATAGTGAAAGCTTAGTGCATCGAACTATTCTTTGAAGAATATGATGTTCTTAGGGATGGTAGAATTCTCCATTTTCTTTATTTGGTTTTGACAAGAAGTAGAGGAAGGGAGAAACAAGTTTTATGACTTAATCTTAGGTGAGTTAGTCGAGGAATTATTGGAAATAACCTCTGTATCTCTCAATTAAGAGTAAGATCTACGTATCTCCTATCCTCTTTTAGTATCTCTCTATTAAGAGTAAGATCTACGTATCTCCTATCCACTCTTAGTCAGACCCCATTTTGTATGTCTCTATTAAGAGTAAGATCTACGTATATCCTATACTATCCTCTCCTAGCCAGATTCCATTGTGTGAAACTACATTGGATATGTCGTTGTTCTTAGTTTAGGTAAGTTATAATTATATCACTCTATGAACTTTTATCAATTTTTCACGACTTGTTCTTAGTTGAGTGAAATATTTTCTTTGTTTCCTTTTTCACCCTTTTTTTCTGATAGGGCACACATGAAAAAAGTGGTTTTTTGGGGAAAAGCAACTGACATCTGACCCTCTCTTGTATCTTTTGGTTATATATGGCAGATCATTCTGAAATTTCATTTTCTCATAGTATAGTTAGGTTGTTTACCTCTTGAATGCTAACCCCCACCCCCCTAAACACCCTCCGAACAAAATTAGCTCATGAAAACATAACGTGTTCAAGCATGAGTTGTTTGTGAACCCACTTACTAGCCCATTTAAGAACAAATGGAGCTTTTGGGCGGCTCGATAGTCTGCATGTTCAGTTTTAACTCAATCCGTCCATTTGACACCTCTTCTAGTAGCTACTAAGATGTGAACAAGATTATGAACTTTTAGGTTATGAGAATTAATGATTGTGTATTCACAAAAACGGTTGTCTCGGTGCATGAATCATCCCACTTTCACTTAGGGTCCAGAGAAGAAGGGTCATTGACCAAAGTAGTGTAATGTAGACACGCTATCTCGAGACAAAAATAATAACCAATTCCACTGTTCGAGCTCGTAACCTATTGAAAACAACCTCTATCCTTACAACGTACACCACTCCTCTCAGAGGATTATATTGAATATCTTATTATTGTTGTGAACCCTAACCTATTGATTATACCGAGATAACTTTATTATAGCTCAGATTTTTCATGTGTATGTAGTGTGTTTTTGTAGGGTCAAATTCTGATTCATTTTTCTGTATGACAGGTGGTAGAAATAGGCAAGATGTTCAACAAACTGATCAAAGATATCCATGCATATGAGAAATGGCAAAAACCTAAAGAATTGGACCTAATGGATATATAGTAATTTGGTCATTAGATATAGTAATTTGGTAGATTTAAATAATTGAACTTAGCATATGGGTTATGTGTGTAATTTTTATCTAATTGTCAATTGCCTTTTTGAGGGAAAATGGTGATATATTTTGGC</genome_strand>
        <mrna_strand>AATGGAGAATTCTTCTTCGGAAAATCTTGACGATGGAGAGTTATGGCTACCTTCTGATATTTTTCCAGTAGAAGAAACTGTTTCTTCTGCTAATAATAAGCTCAAAAACAACAACCCCATTGCTTCTTCTCTTTGCTGTTGTTACTCTTGTGTTCTTCTTCTTCGTCATCCTCATAACTCCATTTTCATGGCTGAACAACAAGTTCTACAGAGTGTTCCAAAGCCATTTCCCATAACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGGTTCAGACCGGCTGAGAGGTGTTGCACCTGTACAGATTGTTCAATTTCAGACTATTTTGAACGGAGTAGAAGAGAAACAACCGGTCCACCACCGGTTTATCCACCGGTTCAACTTCACCACCAGG................................................................................GTTGAGAGTTTGATGGAAGTTAGAGCTCCATTTTTACAGAAGGAAGAACAGAGCCGGTTCATCGGGATTCAGAGAAGAAACCTCGGCCTGAACCGGTTCGCCGGTAACTGGGTTTCGCCGTTTGTGGGTTTCGGTGGCAATGGCTGTGGTTTTAATGGTGAAAGTAGTTCTGTGAGAGATTATGGTGGAACTGGTGTCTTCCTCCCTAGAATACCTAGCAACATCAACAACAATGGTGGAAAGAAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGAAATAGGCAAGATGTTCAACAAACTGATCAAAGATATCCATGCATATGAGAAATGGCAAAAACCTAAAGAATTGGACCTAATGGATATATAGTAATTTGGTCATTAGATATAGTAATTTGGTAGATTTAAATAATTGAACTTAGCATATGGGTTATGTGTGTAATTTTTATCTAATTGTCAATTGCCTTTTTGAGGGAAAATGGTGATATATTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602838" ref_strand="+" ref_description="SGN-U602838 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>atatattgctcatcaacaaacaattccttcatcatataacaattctagttttatcatgcctattacttacaataattaccctaacaataatcataataataattcatatagtgtgaattattcccaaaaatatttaccattgcaagatcaaattggtaacaacatcaacaataattcaacgtagttcggtctgttatttaacaaccatgatgttaattctagttatgtctatgatcaagtttagagtaaacatatggatgttatccggaaaagaaaaacctcaattgcaaataatgtcattgcaagtgccatcaggactcatgatcacaagttcatcaatgttacgtaattggcaagttaatatatcaatgaacaatccaaataatgagctagctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="151374" stop="152373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151674" g_stop="152073" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U602838" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151674" e_stop="152073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATTTCTCATCAACAAACAATTCCTTCATCATATGACAATTCTAGTTTTATCATGCCTAGTACTTACTATAATTACCCTAACAATAACAATCATAATAATAATTCATATAGTGTGAATTATTCCCAAAAATATTTACCATTGCAAGATCAAATTGGTACCAACATCAACAATAATTCAACGTCGTTCGGTC-GTTATTTAACGACCATGATGTTAATTCTAGTCATGTCTATGATCATGTTCAGTGTAATCATATGGATGTTATTTGGAAAAGAAAGGCCTCAGTTTCAAATCATGTCATTACAAGTCCCAACAGGACTCATGATCACAAGTACATCAATGTTAGGTAATTGGCAAGTTAATGTATCAATGAAGAATCCAAATAATGAGCTAGCTATA</genome_strand>
        <mrna_strand>ATATATTGCTCATCAACAAACAATTCCTTCATCATATAACAATTCTAGTTTTATCATGCCTATTACTTACAATAATTACCCTAACAAT---AATCATAATAATAATTCATATAGTGTGAATTATTCCCAAAAATATTTACCATTGCAAGATCAAATTGGTAACAACATCAACAATAATTCAACGTAGTTCGGTCTGTTATTTAACAACCATGATGTTAATTCTAGTTATGTCTATGATCAAGTTTAGAGTAAACATATGGATGTTATCCGGAAAAGAAAAACCTCAATTGCAAATAATGTCATTGCAAGTGCCATCAGGACTCATGATCACAAGTTCATCAATGTTACGTAATTGGCAAGTTAATATATCAATGAACAATCCAAATAATGAGCTAGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569061" ref_strand="+" ref_description="SGN-U569061 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gtattcttctataatttttcttaataaaatagattagaagaattcataggggatttagtaaaaaaaaataattaaattaatgggaaaggaagaagaaaaaccagttttgggatatcaaaaatcagaatattcttatcaaacaaatcctcaattttaccaatcagaccctcaattttatcaatattatgaatataattaccctgcaaggcccctaccttatgtctcccctgatgtagatcaagggttttcatttggcagagtcatggtctgcctaatggtatttttatttttatttgcaatgattataagtatgtttactatgatgatatttatgacaatgaaacctatatttaatttggaatcgttcgaggtccgcgcattcaatttatcaggaaatggcggacctggaacaacgttgaaggctagttgggagacgaaagtatcggttaaaaatataaatactaggtcgtcagtgcttttgaatcaagttgaaacgtcgttggtgtataggtatgttgaactagacgtgtctaacgtggaccatatcgagattcagaaggatagtaacgttcagatactggacgcgttctcttttcctagctcgaaacgaacctttaacacggattctgtggtgaaagaaatggttaatgatagacaaagagggcaaattatgtttgatttgaaacttgaggtactacttatggttaagtctaatgtttttcataaatcagagaaaatgcgtttgttttgtgaaagaattacattagattttaagaatagtacttctaatattccaacatggaatggtaataaacatgaatgtgcatcaagtttttgatttttttgatgtaattatactgtaagaaaataaattttattgcataggtaagaaattaagttgaagttagaatgttttattatgttatgttttcttgtacaaacccaattaactcatgataaaatgttgtgtttgtgttatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="153555" stop="155132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="153854" g_stop="154832" g_length="979"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="984" r_length="984" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-U569061" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>979</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="153854" e_stop="154832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCTTCTATAATTTTTCTTAATAGAATAGATTAGAAGAATTCATAGGGGATTTAGT-AAGAAAAA-AATTAAATTAATGGAAAAGGAAGAAGATAAACCAGTTTTGGGATATCAAAAATCAGAATATTCTTATCAAACAAATCCTCAATTTTACCAATCAGACCCTCAATTTTATCAATATTACGAATATAATTACCCTGCAAGGCCACTACCTTATGTCTCCCCTGATGTAGATCAGGGGTTCTCATTTGGTAGAGTCATGCTTTGCCTAGTGGTATTTTTATTTTTATTTGCGATGATTATAAGTATGTTAACTATGATGATATTTATGACAATGAAACCTACATTTAATTTGGAATCGTTCGAGGTCCGCGCATTCAACTTATCAGGAAATGGCGGACCTGGAACGACGTTGAAAGCTAGTTGGGAGACGAAAGTATCGGTTAAAAATACAAACACTAGGTCATCAATACTTTTGAATCAAGTTGAAACATCGTTGGTGTATAGATATGTTGAACTAGACGTGTCTAACGTGGACCATATCGAGATTCAGAAGGATAGTAACGTTCAGATACTGGATGTGTTCTCTTTTCCTAGCTCGAAACGAACCTTTAACACGGAATCTGTGGTGAAAGAAATGGTTAATGATAGACAAAGAGGGCAAATTATGTTTGATTTGAAACTTGAGGTACTACTTATGGTTAAGTCTAATGTTTTTCATAAATCAGAGAAAATGCGTTTGTTTTGCGAAAGAATTACATTAGATTTTAAGAATAGTACTTCTAATATTCCAACATGGAATGGTAATAAACAAGAATGTGCATCAAGTTTTTGA-TTTTTTGATGTAATTATACTGTAAGAAAATAAATTTTATTATGTAGGTAAGAAATTAAGTTGAAGTTCGAATGTTTTATTATGTTATGTTTTCTTGTGCAAA-CC-ATTAACTCATGATAAAATGTCGTGTTTGTGTTATCTTTT</genome_strand>
        <mrna_strand>GTATTCTTCTATAATTTTTCTTAATAAAATAGATTAGAAGAATTCATAGGGGATTTAGTAAAAAAAAATAATTAAATTAATGGGAAAGGAAGAAGAAAAACCAGTTTTGGGATATCAAAAATCAGAATATTCTTATCAAACAAATCCTCAATTTTACCAATCAGACCCTCAATTTTATCAATATTATGAATATAATTACCCTGCAAGGCCCCTACCTTATGTCTCCCCTGATGTAGATCAAGGGTTTTCATTTGGCAGAGTCATGGTCTGCCTAATGGTATTTTTATTTTTATTTGCAATGATTATAAGTATGTTTACTATGATGATATTTATGACAATGAAACCTATATTTAATTTGGAATCGTTCGAGGTCCGCGCATTCAATTTATCAGGAAATGGCGGACCTGGAACAACGTTGAAGGCTAGTTGGGAGACGAAAGTATCGGTTAAAAATATAAATACTAGGTCGTCAGTGCTTTTGAATCAAGTTGAAACGTCGTTGGTGTATAGGTATGTTGAACTAGACGTGTCTAACGTGGACCATATCGAGATTCAGAAGGATAGTAACGTTCAGATACTGGACGCGTTCTCTTTTCCTAGCTCGAAACGAACCTTTAACACGGATTCTGTGGTGAAAGAAATGGTTAATGATAGACAAAGAGGGCAAATTATGTTTGATTTGAAACTTGAGGTACTACTTATGGTTAAGTCTAATGTTTTTCATAAATCAGAGAAAATGCGTTTGTTTTGTGAAAGAATTACATTAGATTTTAAGAATAGTACTTCTAATATTCCAACATGGAATGGTAATAAACATGAATGTGCATCAAGTTTTTGATTTTTTTGATGTAATTATACTGTAAGAAAATAAATTTTATTGCATAGGTAAGAAATTAAGTTGAAGTTAGAATGTTTTATTATGTTATGTTTTCTTGTACAAACCCAATTAACTCATGATAAAATGTTGTGTTTGTGTTATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>45</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1821" PGL_stop="5034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1821" e_stop="2068"/>
            <exon e_start="2416" e_stop="2464"/>
            <exon e_start="3335" e_stop="3361"/>
            <exon e_start="4600" e_stop="5034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.912"/>
          <exon-intron don_prob="0.451" acc_prob="0.426" e_score="0.571"/>
          <exon-intron don_prob="0.935" acc_prob="0.000" e_score="0.519"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="1821" e_stop="2068" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2069" i_stop="2415" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="2416" e_stop="2464" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.451" acc_prob="0.426">
            <gDNA_intron_boundary i_start="2465" i_stop="3334" i_length="870"/>
          </intron>
          <exon e_serial="3" e_score="0.519">
            <gDNA_exon_boundary e_start="3335" e_stop="3361" e_length="27"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3362" i_stop="4599" i_length="1238"/>
          </intron>
          <exon e_serial="4" e_score="0.904">
            <gDNA_exon_boundary e_start="4600" e_stop="5034" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1821" stop="2068"/>
              <exon start="2416" stop="2464"/>
              <exon start="3335" stop="3361"/>
              <exon start="4600" stop="5034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGATCACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG : CAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAG : CTCGGATACATTACAGAGTATTCGCAT : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTAATCATGCAGTAGTTCATCAAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAG</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  I  T  *  P  I  *  C  *  D  G  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  I  *  A  S  A  E  *  G  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  G :   S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q  :  L  G  Y  I  T  E  Y  S  H  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  W  R  N  H  A  V  V  H  Q  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  G  H  P  T  L  F  Q </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  S  P  S  P  S  D  A  R  T  V  T  P  P  P  T  K  E  V  I  R  E  G  E  D  G  E  Y  E  Q  V  Q  N  E  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L   : A  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N  S :   S  D  T  L  Q  S  I  R  I :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  G  V  I  M  Q  *  F  I  K  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  Q  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  *  A  T  Q  L  C  F   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  G  E  E  D  D  H  L  A  H  L  M  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  N  M  S  K  C  R  M  R  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  W  :  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T   : A  R  I  H  Y  R  V  F  A   : F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  A  *  S  C  S  S  S  S  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  S  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  R  P  P  N  F  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1822" stop="2068"/>
                    <exon start="2416" stop="2464"/>
                    <exon start="3335" stop="3361"/>
                    <exon start="4600" stop="4699"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRSPSPSDARTVTPPPTKEVIREGEDGEYEQVQNEVFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLAACFSRNKICCSKRLNSSDTLQSIRIFFFFFFFFFFFFFFFFFFFFFFFFFFFGVIMQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4700" stop="5014"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIKDAYDFLVDCHELLHKMGIVEQFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9263" PGL_stop="8284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9263" e_stop="8284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="9263" e_stop="8284" e_length="980"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9263" stop="8284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580196" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAACTTTTTTTTCTCTCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTATAAAAAAATATTTAAAATTGGGAAGGGAAAAAAATGGGGAATTCATAATCTTGTTATTACAGGTTATAATTTATTATATATCATTATATTATTGTTTTTTTTTTATAACAATAATATATTTAATGCGATCTCAGTAGTATGTTAATCTTATTTCTATATTTTTATAGAATAATAAAACTGTTTTTT</gDNA_template>
            <first_frame> K  Q  L  F  F  L  S  S  L  D  H  H  N  Y  H  H  H  H  H  R  H  V  G  *  K  V  *  P  P  Q  E  Q  E  E  K  A  N  S  T  Y  L  C  W  S  S  Y  L  P  L  L  S  S  S  H  Y  P  H  S  M  G  R  T  S  P  Q  K  T  S  F  H  S  P  R  H  N  Y  L  Y  L  Q  R  I  R  P  K  H  L  L  D  L  Y  P  N  H  N  I  R  S  K  P  *  *  Q  N  R  N  L  L  *  *  H  A  C  I  R  Y  V  S  *  S  T  N  H  V  L  H  A  N  T  P  G  V  S  R  P  *  G  C  *  H  M  V  P  V  C  L  W  E  *  H  P  D  R  S  V  *  R  A  G  P  V  R  G  S  T  K  R  W  R  L  V  G  F  *  D  *  W  T  G  K  M  E  S  G  V  H  N  N  G  P  L  P  S  A  C  H  V  L  C  L  R  A  T  W  *  S  A  R  L  R  R  G  Y  G  W  K  *  R  R  *  V  S  T  S  P  G  L  L  R  Q  C  L  K  *  R  P  S  S  L  S  *  S  I  L  F  S  Y  L  K  *  M  F  C  S  F  I  V  D  E  I  V  Y  F  S  Y  K  K  I  F  K  I  G  K  G  K  K  W  G  I  H  N  L  V  I  T  G  Y  N  L  L  Y  I  I  I  L  L  F  F  F  Y  N  N  N  I  F  N  A  I  S  V  V  C  *  S  Y  F  Y  I  F  I  E  *  *  N  C  F   </first_frame>
            <second_frame>  N  N  F  F  F  S  P  P  S  T  I  T  T  I  T  T  T  I  T  D  M  S  D  K  K  C  S  H  H  K  S  K  K  K  K  L  I  R  R  I  C  A  G  V  L  I  F  L  F  L  A  L  L  T  I  L  I  V  W  A  V  L  H  P  K  K  P  R  F  I  L  Q  D  T  T  I  F  T  F  N  V  S  A  P  N  I  F  S  T  S  I  Q  T  T  I  Y  A  R  N  P  N  S  K  I  G  I  Y  Y  D  S  M  H  V  Y  A  T  Y  H  N  Q  Q  I  T  Y  Y  T  Q  I  P  Q  V  Y  Q  G  H  K  D  V  N  I  W  S  P  F  V  Y  G  N  N  I  P  I  A  P  Y  N  G  P  G  L  S  E  D  Q  Q  N  G  G  V  W  L  D  F  K  I  D  G  R  V  K  W  K  V  G  S  I  T  T  G  H  Y  H  L  H  V  T  C  S  A  Y  V  P  L  G  D  R  P  G  Y  G  G  V  M  V  G  N  N  A  V  K  Y  Q  L  A  R  D  C  S  V  S  V  *  N  N  D  R  Q  V  C  L  D  Q  F  S  F  L  I  *  N  K  C  F  V  P  L  *  L  M  K  L  Y  I  F  L  I  K  K  Y  L  K  L  G  R  E  K  N  G  E  F  I  I  L  L  L  Q  V  I  I  Y  Y  I  S  L  Y  Y  C  F  F  F  I  T  I  I  Y  L  M  R  S  Q  *  Y  V  N  L  I  S  I  F  L  *  N  N  K  T  V  F  </second_frame>
            <third_frame>   T  T  F  F  S  L  L  P  R  P  S  Q  L  S  P  P  P  S  P  T  C  R  I  K  S  V  A  T  T  R  A  R  R  K  S  *  F  D  V  F  V  L  E  F  L  S  S  S  S  *  L  F  S  L  S  S  *  Y  G  P  Y  F  T  P  K  N  L  V  S  F  S  K  T  Q  L  S  L  P  S  T  Y  P  P  Q  T  S  S  R  P  L  S  K  P  Q  Y  T  L  E  T  L  I  A  K  S  E  F  I  M  I  A  C  M  Y  T  L  R  I  I  I  N  K  S  R  I  T  R  K  Y  P  R  C  I  K  A  I  R  M  L  T  Y  G  P  R  L  F  M  G  I  T  S  R  S  L  R  I  T  G  R  A  C  Q  R  I  N  K  T  V  A  F  G  W  I  L  R  L  M  D  G  *  N  G  K  W  G  P  *  Q  R  A  I  T  I  C  M  S  R  A  L  L  T  C  H  L  V  I  G  P  V  T  E  G  L  W  L  E  I  T  P  L  S  I  N  *  P  G  I  A  P  S  V  F  E  I  T  T  V  K  F  V  L  I  N  S  L  F  L  F  K  I  N  V  L  F  L  Y  S  *  *  N  C  I  F  F  L  *  K  N  I  *  N  W  E  G  K  K  M  G  N  S  *  S  C  Y  Y  R  L  *  F  I  I  Y  H  Y  I  I  V  F  F  L  *  Q  *  Y  I  *  C  D  L  S  S  M  L  I  L  F  L  Y  F  Y  R  I  I  K  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9262" stop="8567"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNFFFSPPSTITTITTTITDMSDKKCSHHKSKKKKLIRRICAGVLIFLFLALLTILIVWAVLHPKKPRFILQDTTIFTFNVSAPNIFSTSIQTTIYARNPNSKIGIYYDSMHVYATYHNQQITYYTQIPQVYQGHKDVNIWSPFVYGNNIPIAPYNGPGLSEDQQNGGVWLDFKIDGRVKWKVGSITTGHYHLHVTCSAYVPLGDRPGYGGVMVGNNAVKYQLARDCSVSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="8432" PGL_stop="9267"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8432" e_stop="9267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="8432" e_stop="9267" e_length="836"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8432" stop="9267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCATTTTTTTCCCTTCCCAATTTTAAATATTTTTTTATAAGAAAAATATACAATTTCATCAACTATAAAGGAACAAAACATTTATTTTAAATAAGAAAAGAGAATTGATCAAGACAAACTTGACGGTCGTTATTTCAAACACTGACGGAGCAATCCCGGGCTAGTTGATACTTAACGGCGTTATTTCCAACCATAACCCCTCCGTAACCGGGCCGATCACCAAGTGGCACGTAAGCAGAGCACGTGACATGCAGATGGTAATGGCCCGTTGTTATGGACCCCACTTTCCATTTTACCCGTCCATCAATCTTAAAATCCAACCAAACGCCACCGTTTTGTTGATCCTCTGACAGGCCCGGCCCGTTATACGGAGCGATCGGGATGTTATTCCCATAAACAAACGGGGACCATATGTTAACATCCTTATGGCCTTGATACACCTGGGGTATTTGCGTGTAATACGTGATTTGTTGATTATGATACGTAGCGTATACATGCATGCTATCATAATAAATTCCGATTTTGCTATTAGGGTTTCGAGCGTATATTGTGGTTTGGATAGAGGTCGAGAAGATGTTTGGGGCGGATACGTTGAAGGTAAAGATAGTTGTGTCTTGGAGAATGAAACGAGGTTTTTTGGGGTGAAGTACGGCCCATACTATGAGGATAGTGAGAAGAGCTAAGAAGAGGAAGATAAGAACTCCAGCACAAATACGTCGAATTAGCTTTTTCTTCTTGCTCTTGTGGTGGCTACACTTTTTATCCGACATGTCGGTGATGGTGGTGGTGATAGTTGTGATGGTCGAGGGAGGAGAGAAAAAAAAGTTGTTTGTGT</gDNA_template>
            <first_frame> P  I  F  F  P  S  Q  F  *  I  F  F  Y  K  K  N  I  Q  F  H  Q  L  *  R  N  K  T  F  I  L  N  K  K  R  E  L  I  K  T  N  L  T  V  V  I  S  N  T  D  G  A  I  P  G  *  L  I  L  N  G  V  I  S  N  H  N  P  S  V  T  G  P  I  T  K  W  H  V  S  R  A  R  D  M  Q  M  V  M  A  R  C  Y  G  P  H  F  P  F  Y  P  S  I  N  L  K  I  Q  P  N  A  T  V  L  L  I  L  *  Q  A  R  P  V  I  R  S  D  R  D  V  I  P  I  N  K  R  G  P  Y  V  N  I  L  M  A  L  I  H  L  G  Y  L  R  V  I  R  D  L  L  I  M  I  R  S  V  Y  M  H  A  I  I  I  N  S  D  F  A  I  R  V  S  S  V  Y  C  G  L  D  R  G  R  E  D  V  W  G  G  Y  V  E  G  K  D  S  C  V  L  E  N  E  T  R  F  F  G  V  K  Y  G  P  Y  Y  E  D  S  E  K  S  *  E  E  E  D  K  N  S  S  T  N  T  S  N  *  L  F  L  L  A  L  V  V  A  T  L  F  I  R  H  V  G  D  G  G  G  D  S  C  D  G  R  G  R  R  E  K  K  V  V  C   </first_frame>
            <second_frame>  P  F  F  S  L  P  N  F  K  Y  F  F  I  R  K  I  Y  N  F  I  N  Y  K  G  T  K  H  L  F  *  I  R  K  E  N  *  S  R  Q  T  *  R  S  L  F  Q  T  L  T  E  Q  S  R  A  S  *  Y  L  T  A  L  F  P  T  I  T  P  P  *  P  G  R  S  P  S  G  T  *  A  E  H  V  T  C  R  W  *  W  P  V  V  M  D  P  T  F  H  F  T  R  P  S  I  L  K  S  N  Q  T  P  P  F  C  *  S  S  D  R  P  G  P  L  Y  G  A  I  G  M  L  F  P  *  T  N  G  D  H  M  L  T  S  L  W  P  *  Y  T  W  G  I  C  V  *  Y  V  I  C  *  L  *  Y  V  A  Y  T  C  M  L  S  *  *  I  P  I  L  L  L  G  F  R  A  Y  I  V  V  W  I  E  V  E  K  M  F  G  A  D  T  L  K  V  K  I  V  V  S  W  R  M  K  R  G  F  L  G  *  S  T  A  H  T  M  R  I  V  R  R  A  K  K  R  K  I  R  T  P  A  Q  I  R  R  I  S  F  F  F  L  L  L  W  W  L  H  F  L  S  D  M  S  V  M  V  V  V  I  V  V  M  V  E  G  G  E  K  K  K  L  F  V  </second_frame>
            <third_frame>   H  F  F  P  F  P  I  L  N  I  F  L  *  E  K  Y  T  I  S  S  T  I  K  E  Q  N  I  Y  F  K  *  E  K  R  I  D  Q  D  K  L  D  G  R  Y  F  K  H  *  R  S  N  P  G  L  V  D  T  *  R  R  Y  F  Q  P  *  P  L  R  N  R  A  D  H  Q  V  A  R  K  Q  S  T  *  H  A  D  G  N  G  P  L  L  W  T  P  L  S  I  L  P  V  H  Q  S  *  N  P  T  K  R  H  R  F  V  D  P  L  T  G  P  A  R  Y  T  E  R  S  G  C  Y  S  H  K  Q  T  G  T  I  C  *  H  P  Y  G  L  D  T  P  G  V  F  A  C  N  T  *  F  V  D  Y  D  T  *  R  I  H  A  C  Y  H  N  K  F  R  F  C  Y  *  G  F  E  R  I  L  W  F  G  *  R  S  R  R  C  L  G  R  I  R  *  R  *  R  *  L  C  L  G  E  *  N  E  V  F  W  G  E  V  R  P  I  L  *  G  *  *  E  E  L  R  R  G  R  *  E  L  Q  H  K  Y  V  E  L  A  F  S  S  C  S  C  G  G  Y  T  F  Y  P  T  C  R  *  W  W  W  *  *  L  *  W  S  R  E  E  R  K  K  S  C  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8783" stop="9115"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QARPVIRSDRDVIPINKRGPYVNILMALIHLGYLRVIRDLLIMIRSVYMHAIIINSDFAIRVSSVYCGLDRGREDVWGGYVEGKDSCVLENETRFFGVKYGPYYEDSEKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19309" PGL_stop="17848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19309" e_stop="18097"/>
            <exon e_start="18027" e_stop="17848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.913"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="19309" e_stop="18097" e_length="1213"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18096" i_stop="18028" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="18027" e_stop="17848" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19309" stop="18097"/>
              <exon start="18027" stop="17848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581192" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGTTGATATGCGAGAAAGATATCCACACCTGTTCACAGATTCAGGTACTCCTTTTCCCCTTATTTTCCTTCTTGTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTAATGTAACAACCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGCTGGGACGACGGAACCCACAACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGATGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACAGACCGTCGCAGGCACGACGGGCTGTCACAAACTGCGTAATCCCAGTCTGGATCGGATTTCCTTATACGTTTTAAAGGGCGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAATCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTTCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATGAACGAGAGGAAAAAACACAAAGCTTGGGAAATTGCTTGCTTGATCACTAATCTTCAGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAACGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTTATAATGAGGCCTTGGTATAAAAGAAGGTGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAAAGGGAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGATCGGGTGTCACGAACCGACACGTAGA : TATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGAATCGGGTGTCACGAACCGACACGTAGATTTAGGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGAGAGCGGAGTGTCACGTACC</gDNA_template>
            <first_frame> E  V  D  M  R  E  R  Y  P  H  L  F  T  D  S  G  T  P  F  P  L  I  F  L  L  V  I  V  R  G  R  T  M  G  K  L  V  S  N  V  T  T  C  L  V  V  L  S  S  R  F  Y  F  W  K  N  R  L  G  R  R  N  P  Q  R  T  V  M  S  T  T  D  R  R  G  V  S  F  Q  N  T  *  K  F  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  R  A  *  R  T  V  T  D  S  L  V  E  I  E  S  L  N  L  A  T  T  C  R  T  D  R  R  R  H  D  G  L  S  Q  T  A  *  S  Q  S  G  S  D  F  L  I  R  F  K  G  R  F  *  L  F  L  L  *  L  *  S  *  W  V  N  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  K  L  I  S  G  L  L  F  P  Y  F  I  L  N  Y  I  L  I  R  V  K  E  R  G  F  E  *  R  K  *  K  E  Q  E  K  E  R  E  S  R  T  R  K  R  M  N  E  R  K  K  H  K  A  W  E  I  A  C  L  I  T  N  L  Q  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  R  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  L  C  L  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  G  I  D  D  A  L  V  R  K  K  A  *  *  I  D  K  G  R  I  S  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  K  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *   : I  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  E  S  G  V  T  N  R  H  V  D  L  G  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  </first_frame>
            <second_frame>  R  L  I  C  E  K  D  I  H  T  C  S  Q  I  Q  V  L  L  F  P  L  F  S  F  L  *  S  F  G  D  E  R  W  V  N  W  Y  L  M  *  Q  P  V  *  S  F  *  A  A  D  F  I  S  G  K  T  G  W  D  D  G  T  H  N  G  P  S  *  A  R  R  T  V  E  G  S  R  F  K  T  L  R  N  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  M  D  R  H  G  R  D  G  P  S  Q  T  L  W  W  K  L  S  L  *  T  L  R  R  P  A  G  Q  T  V  A  G  T  T  G  C  H  K  L  R  N  P  S  L  D  R  I  S  L  Y  V  L  K  G  V  F  D  Y  S  C  F  N  Y  K  V  S  G  L  M  L  I  N  L  I  T  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  F  H  I  L  F  L  I  I  Y  *  L  G  *  K  K  E  G  L  N  K  E  N  R  K  N  K  R  K  R  E  K  V  E  R  E  R  G  *  T  R  G  K  N  T  K  L  G  K  L  L  A  *  S  L  I  F  S  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  Y  N  E  A  L  V  *  K  K  V  *  *  T  K  I  M  G  L  M  M  P  W  *  E  R  R  L  D  E  L  I  K  G  E  L  V  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  I  *  E  I  G  C  H  E  P  T  R  R  :  Y  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  N  R  V  S  R  T  D  T  *  I  *  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  E  S  G  V  S  R  T </second_frame>
            <third_frame>   G  *  Y  A  R  K  I  S  T  P  V  H  R  F  R  Y  S  F  S  P  Y  F  P  S  C  D  R  S  G  T  N  D  G  *  I  G  I  *  C  N  N  L  F  S  R  F  E  Q  Q  I  L  F  L  E  K  Q  A  G  T  T  E  P  T  T  D  R  H  E  H  D  G  P  S  R  G  L  V  S  K  H  L  E  I  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  W  T  V  T  G  V  T  D  R  H  R  L  F  G  G  N  *  V  S  E  P  C  D  D  L  Q  D  R  P  S  Q  A  R  R  A  V  T  N  C  V  I  P  V  W  I  G  F  P  Y  T  F  *  R  A  F  L  T  I  P  A  L  I  I  K  L  V  G  *  C  *  *  I  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  S  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  V  *  I  K  K  I  E  R  T  R  E  R  E  R  K  S  N  E  K  E  D  E  R  E  E  K  T  Q  S  L  G  N  C  L  L  D  H  *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  T  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  I  L  I  S  L  F  I  M  R  P  W  Y  K  R  R  C  D  E  L  K  *  W  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  R  E  N  *  W  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  Q  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  R  F  R  R  S  G  V  T  N  R  H  V  D :   I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  R  A  E  C  H  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19309" stop="19064"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVDMRERYPHLFTDSGTPFPLIFLLVIVRGRTMGKLVSNVTTCLVVLSSRFYFWKNRLGRRNPQRTVMSTTDRRGVSFQNT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19193" stop="18954"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNNLFSRFEQQILFLEKQAGTTEPTTDRHEHDGPSRGLVSKHLEILKLGTENRLSELRNGMAGWTVTGVTDRHRLFGGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18945" stop="18751"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLRRPAGQTVAGTTGCHKLRNPSLDRISLYVLKGVFDYSCFNYKVSGLMLINLITWGLKEVTLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19851" PGL_stop="20027"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19851" e_stop="20027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="19851" e_stop="20027" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19851" stop="20027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGTTATCCCAATGTCCTCCAAATTCTATCACACATGCACGAAGCATATCCTCCAATACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  C  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  V  L  Q  I  L  S  H  M  H  E  A  Y  P  P  I  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  F  R  *  G  *  E  V  I  P  M  S  S  K  F  Y  H  T  C  T  K  H  I  L  Q  Y  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="20066" PGL_stop="20558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20066" e_stop="20558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="20066" e_stop="20558" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20066" stop="20558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCAATTCCGCATGCAATGTTTTCCAAAACATAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCGGCATTGTAAGTCACCTTAACCGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTCCTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCGCGATACATCTTGGTTGCACCAGGGTGTATAGAATACCTTGAACTATGAGCCTCTGCCAGGATAGTGTTGATCAAATCATCGACGCGGGGT</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  K  H  R  S  K  L  R  T  S  I  *  Y  D  G  *  W  N  P  M  Q  P  N  N  F  *  D  I  D  F  G  *  L  L  G  I  V  S  H  L  N  R  N  K  M  S  R  L  S  *  P  I  N  N  H  P  N  R  V  V  L  T  H  R  L  W  K  T  N  H  E  V  H  C  D  S  L  P  F  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  S  L  L  T  V  W  T  F  G  N  K  I  H  N  I  T  L  H  S  T  P  P  K  V  L  L  *  V  A  I  H  L  G  C  T  R  V  Y  R  I  P  *  T  M  S  L  C  Q  D  S  V  D  Q  I  I  D  A  G  </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  I  E  V  N  C  V  P  L  S  D  M  M  D  S  G  T  P  C  N  R  T  I  S  E  I  *  I  L  A  N  F  S  A  L  *  V  T  L  T  G  I  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  P  C  *  Q  F  G  H  L  A  I  K  S  T  I  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  A  R  I  V  L  I  K  S  S  T  R  G </second_frame>
            <third_frame>   P  I  P  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  I  V  E  P  H  A  T  E  Q  F  L  R  Y  R  F  W  L  T  S  R  H  C  K  S  P  *  P  E  *  N  E  Q  T  *  L  T  Y  Q  Q  S  P  K  *  S  R  T  Y  P  S  S  L  E  D  Q  P  R  S  P  L  R  F  S  P  I  S  I  P  E  W  A  F  S  E  V  F  L  R  A  F  G  V  H  T  F  L  V  D  S  L  D  I  W  Q  *  N  P  Q  Y  H  A  S  F  Y  S  T  K  S  V  A  L  G  R  D  T  S  W  L  H  Q  G  V  *  N  T  L  N  Y  E  P  L  P  G  *  C  *  S  N  H  R  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20240" stop="20464"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPNRVVLTHRLWKTNHEVHCDSLPFPFRNGHSLKCSSGPLVFILSLLTVWTFGNKIHNITLHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="21331" PGL_stop="22143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21331" e_stop="22143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="21331" e_stop="22143" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21331" stop="22143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAAGCGGCGATAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAAAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGTAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTAGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACACTCGGAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  S  G  D  S  N  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  L  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  C  H  Q  *  I  R  S  Q  K  D  P  N  M  A  *  K  S  R  S  S  N  S  *  M  *  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  *  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  L  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  C  T  L  G  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L </first_frame>
            <second_frame>  E  S  L  D  K  A  A  I  V  T  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  *  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  V  I  N  E  Y  D  H  K  K  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  C  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  S  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  *  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  A  H  S  E  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I   </second_frame>
            <third_frame>   N  P  L  T  K  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  M  S  S  M  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  V  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  M  H  T  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21596" stop="21802"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYVINEYDHKKIQIWLKNPVHQTHECSRGIRKTKRHHYKFVMPIPSSKSSLWHIRCPYFQLMITGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21528" stop="21725"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNMSSMNTITKRSKYGLKIPFIKLMNVAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="24041" PGL_stop="21460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24041" e_stop="21850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="24041" e_stop="21850" e_length="2192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24041" stop="21850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24041" stop="22616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24023" stop="23271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23977" stop="23422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGCAGCGTCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGATCACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAAGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACAACGAAATCTTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGAAGGAGTAAAGCCAGATGACTTCACCATGGCAACTACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTTTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGGCCTATGCTTGATTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACATGGTGGTCGAGGTAATGGTGGTCACCAAAATGACCGGGGTGATGGGAAAATTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTCAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAAACCAGTGCGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTTCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTCCGAGTGTGCATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATG</gDNA_template>
            <first_frame> K  S  S  V  K  R  P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  I  T  *  P  I  *  C  *  D  G  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  I  *  A  S  A  E  *  G  I  A  T  P  T  Y  P  R  N  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  R  L  G  T  S  S  V  F  C  T  S  T  S  D  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  T  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  G  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  S  Y  N  E  I  F  S  R  S  G  R  L  R  D  R  G  R  R  S  K  A  R  *  L  H  H  G  N  Y  I  K  E  V  S  K  G  R  *  V  *  W  F  L  L  *  R  T  G  F  R  R  L  L  S  S  T  H  S  V  F  T  T  D  C  S  W  G  S  T  S  D  R  S  T  L  L  *  E  A  Y  A  *  F  *  R  V  L  W  M  W  G  D  W  T  Y  *  E  E  L  S  Q  T  E  L  *  T  P  N  S  *  R  *  R  W  S  W  *  R  P  L  F  W  R  T  W  W  S  R  *  W  W  S  P  K  *  P  G  *  W  E  N  W  S  H  Y  I  T  T  W  *  G  Q  R  T  N  K  R  K  G  P  L  L  C  F  P  W  E  I  G  G  G  D  I  *  C  C  H  H  R  *  S  S  G  L  *  L  H  G  F  C  I  V  *  S  W  I  H  I  F  L  C  I  F  L  I  C  *  W  S  K  F  T  L  *  I  T  *  Y  A  Y  S  C  F  Y  S  G  G  *  V  C  G  S  *  K  G  I  *  V  L  F  G  E  L  C  G  E  K  H  L  C  R  F  G  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  T  S  A  Y  H  L  F  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  G  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  P  S  V  H  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  S  H  *   </first_frame>
            <second_frame>  R  A  A  S  R  G  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  S  P  S  P  S  D  A  R  T  V  T  P  P  P  T  K  E  V  I  R  E  G  E  D  G  E  Y  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  *  A  P  P  V  F  S  A  P  A  P  Q  T  P  E  V  Q  H  A  A  T  A  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  K  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  Q  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  *  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  T  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K  P  D  D  F  T  M  A  T  T  S  K  R  F  R  K  G  G  E  F  N  G  S  Y  S  R  G  Q  G  S  G  G  Y  S  V  R  P  I  Q  F  S  L  Q  T  V  V  G  G  P  P  Q  T  G  Q  H  F  S  E  R  P  M  L  D  S  R  E  C  Y  G  C  G  E  T  G  H  I  R  R  N  C  P  K  Q  S  Y  R  P  P  I  A  R  G  R  G  G  H  G  R  G  R  Y  S  G  G  H  G  G  R  G  N  G  G  H  Q  N  D  R  G  D  G  K  I  G  A  T  T  S  Q  H  G  R  G  N  G  Q  T  N  E  R  A  H  C  Y  A  F  P  G  R  S  E  A  E  T  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  A  S  V  L  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  R  N  T  Y  V  D  L  V  I  S  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  K  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  Y  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  L  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  V  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  </second_frame>
            <third_frame>   E  Q  R  Q  E  A  V  V  E  V  V  G  G  R  P  L  G  E  E  D  D  H  L  A  H  L  M  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  N  M  S  K  C  R  M  R  D  C  H  P  N  L  P  Q  K  *  S  I  R  F  S  L  I  L  V  G  C  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  R  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  N  I  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  S  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  R  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  Q  L  Q  R  N  L  F  K  K  W  *  T  S  *  *  R  *  K  E  *  S  Q  M  T  S  P  W  Q  L  H  Q  R  G  F  E  R  E  V  S  L  M  V  L  T  L  E  D  R  V  P  E  V  T  Q  F  D  P  F  S  F  H  Y  R  L  *  L  G  V  H  L  R  P  V  N  T  S  L  R  G  L  C  L  I  L  E  S  V  M  D  V  G  R  L  D  I  L  G  G  I  V  P  N  R  V  I  D  P  Q  *  L  E  V  E  V  V  M  V  E  A  V  I  L  E  D  M  V  V  E  V  M  V  V  T  K  M  T  G  V  M  G  K  L  E  P  L  H  H  N  M  V  G  A  T  D  K  Q  T  K  G  P  I  V  M  L  S  L  G  D  R  R  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  L  L  Y  C  L  I  L  D  P  H  F  L  M  Y  L  P  H  L  L  M  V  *  I  Y  I  V  N  Y  L  I  C  L  F  V  F  L  L  R  W  V  S  L  W  *  L  K  R  Y  I  G  L  V  W  *  T  L  W  G  E  T  L  M  *  I  W  L  S  Q  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  N  Q  C  V  S  S  L  F  F  V  L  R  K  W  L  V  K  G  I  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  Q  L  S  R  F  R  W  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  S  E  C  A  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23290" stop="21851"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1440</number_coding_nucleotides>
                  <number_encoded_amino_acids>480</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATQLCFSPQERIRRFVKGLRSELRISALQVAATTKSFQEVVDFVIEVEGVKPDDFTMATTSKRFRKGGEFNGSYSRGQGSGGYSVRPIQFSLQTVVGGPPQTGQHFSERPMLDSRECYGCGETGHIRRNCPKQSYRPPIARGRGGHGRGRYSGGHGGRGNGGHQNDRGDGKIGATTSQHGRGNGQTNERAHCYAFPGRSEAETSDAVITGNLLVCDCMASVLFDPGSTFSYVSSSFANGLNLHCELLDMPIRVSTPVGESVVVEKVYRSCLVNFVGRNTYVDLVISEMVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSKPVRIISFLRAKKMVSKGYLAFLAHLKDDTTQVPSIESVSVVREFLDVFLADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRVCIDYRQLNKVTIKNKYPLPRID</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23800" stop="23291"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APPVFSAPAPQTPEVQHAATAAPRMDVPLEIGTFPRLTTGPIMTNDQHKLFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEQFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24040" stop="23801"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAASRGRGRGRGRTSSRGRGRSPSPSDARTVTPPPTKEVIREGEDGEYEQVQNEGLPPQPTPEMINQVLAYLSGLSDQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24023" e_stop="23176"/>
            <exon e_start="22431" e_stop="21903"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.174" e_score="0.915"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="24023" e_stop="23176" e_length="848"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.174">
            <gDNA_intron_boundary i_start="23175" i_stop="22432" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="22431" e_stop="21903" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24023" stop="23271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23977" stop="23422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23376" stop="23176"/>
              <exon start="22431" stop="21903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGATCACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAAGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACAACGAAATCTTTTCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAAACCAGTGCGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTTCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTCCGAGTGTGCATAGACTACAG</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  I  T  *  P  I  *  C  *  D  G  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  I  *  A  S  A  E  *  G  I  A  T  P  T  Y  P  R  N  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  R  L  G  T  S  S  V  F  C  T  S  T  S  D  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  T  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  G  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  S  Y  N  E  I  F  S  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  T  S  A  Y  H  L  F  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  G  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  P  S  V  H  R  L  Q </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  S  P  S  P  S  D  A  R  T  V  T  P  P  P  T  K  E  V  I  R  E  G  E  D  G  E  Y  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  *  A  P  P  V  F  S  A  P  A  P  Q  T  P  E  V  Q  H  A  A  T  A  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  K  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  Q  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  *  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  T  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  K  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  Y  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  L  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  V  C  I  D  Y   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  G  E  E  D  D  H  L  A  H  L  M  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  N  M  S  K  C  R  M  R  D  C  H  P  N  L  P  Q  K  *  S  I  R  F  S  L  I  L  V  G  C  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  R  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  N  I  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  S  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  R  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  Q  L  Q  R  N  L  F  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  N  Q  C  V  S  S  L  F  F  V  L  R  K  W  L  V  K  G  I  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  Q  L  S  R  F  R  W  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  S  E  C  A  *  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23290" stop="23176"/>
                    <exon start="22431" stop="21905"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATQLCFSPQERIRRFVKGLRSELRISALQVAATTKSFQEMVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSKPVRIISFLRAKKMVSKGYLAFLAHLKDDTTQVPSIESVSVVREFLDVFLADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRVCIDY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23800" stop="23291"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APPVFSAPAPQTPEVQHAATAAPRMDVPLEIGTFPRLTTGPIMTNDQHKLFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEQFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24022" stop="23801"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRSPSPSDARTVTPPPTKEVIREGEDGEYEQVQNEGLPPQPTPEMINQVLAYLSGLSDQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="24023" e_stop="23145"/>
            <exon e_start="22029" e_stop="21460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.927"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="24023" e_stop="23145" e_length="879"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23144" i_stop="22030" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="22029" e_stop="21460" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24023" stop="23271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24011" stop="23145"/>
              <exon start="22029" stop="21460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23977" stop="23422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGATCACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAAGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACAACGAAATCTTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGAAGG : AGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTCCGAGTGTGCATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTAAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACTAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTACATTCATGAGTTTGATGAACGGGATTTTTAAGCCATATTTGGATCTTTTTGTGATCGTATTCATTGATGACATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTAAGGGAGAAAAAGCTTTATGCCAAATTCTCCAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCATGTGGTTTCTA</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  I  T  *  P  I  *  C  *  D  G  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  I  *  A  S  A  E  *  G  I  A  T  P  T  Y  P  R  N  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  R  L  G  T  S  S  V  F  C  T  S  T  S  D  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  T  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  G  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  S  Y  N  E  I  F  S  R  S  G  R  L  R  D  R  G  R  R  :  S  *  K  P  N  F  K  S  C  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  S  E  C  A  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  V  I  I  N  *  K  Y  G  Q  R  M  C  Q  R  L  L  L  E  L  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  H  S  *  V  *  *  T  G  F  L  S  H  I  W  I  F  L  *  S  Y  S  L  M  T  Y  W  Y  T  Q  R  A  R  R  N  M  K  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  N  S  P  S  V  S  F  G  *  M  Q  C  P  S  W  G  M  W  F  L </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  S  P  S  P  S  D  A  R  T  V  T  P  P  P  T  K  E  V  I  R  E  G  E  D  G  E  Y  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  *  A  P  P  V  F  S  A  P  A  P  Q  T  P  E  V  Q  H  A  A  T  A  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  K  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  Q  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  *  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  T  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G :   V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  P  S  V  H  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  S  H  *  *  L  V  R  S  V  T  R  C  L  C  L  L  *  D  *  L  K  I  R  L  S  S  I  E  N  T  G  N  G  C  A  K  D  C  F  *  N  *  V  W  A  L  R  I  C  S  D  V  F  W  S  Y  E  C  P  C  Y  I  H  E  F  D  E  R  D  F  *  A  I  F  G  S  F  C  D  R  I  H  *  *  H  I  G  I  L  K  E  Q  E  G  T  *  R  A  F  E  N  G  I  G  N  V  K  G  E  K  A  L  C  Q  I  L  Q  V  *  V  L  A  R  C  S  V  L  L  G  A  C  G  F   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  G  E  E  D  D  H  L  A  H  L  M  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  N  M  S  K  C  R  M  R  D  C  H  P  N  L  P  Q  K  *  S  I  R  F  S  L  I  L  V  G  C  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  R  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  N  I  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  S  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  R  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  Q  L  Q  R  N  L  F  K  K  W  *  T  S  *  *  R  *  K   : E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  V  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  T  F  M  S  L  M  N  G  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  V  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  L  G  H  V  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23148" stop="23145"/>
                    <exon start="22029" stop="21461"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRVCIDYRQLNKVTIKNKYPLPRIDDLFDQLQGACVFSKIDLRSGYHQLKIRATDVPKTAFRTRYGHYEFVVMSFGLTNAPATFMSLMNGIFKPYLDLFVIVFIDDILVYSKSKKEHEEHLRMVLEMLREKKLYAKFSKCEFWLDAVSFLGHVVS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23800" stop="23291"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APPVFSAPAPQTPEVQHAATAAPRMDVPLEIGTFPRLTTGPIMTNDQHKLFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEQFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24022" stop="23801"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRSPSPSDARTVTPPPTKEVIREGEDGEYEQVQNEGLPPQPTPEMINQVLAYLSGLSDQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="22147" PGL_stop="24041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22147" e_stop="24041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="22147" e_stop="24041" e_length="1895"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22147" stop="22640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22322" stop="22647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22534" stop="24041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAACACATCCAGAAACTCACGAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGCACTGGTTTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTGAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCCATCACCCCGGTCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAATCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTAGTTGCCATGGTGAAGTCATCTGGCTTTACTCCTTCTACCTCTATCACGAAGTCTACCACTTCTTGAAAAGATTTCGTTGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCCTATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACTGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTTATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCGGAGTCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGCCTAACCTTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATTTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGCTCATATTCCCCATCCTCCCCTTCTCTTATTACTTCCTTAGTCGGTGGAGGAGTCACCGTCCTAGCATCAGATGGGCTAGGTGATCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGACGCTGCTCTT</gDNA_template>
            <first_frame> G  T  H  P  E  T  H  E  P  P  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  K  R  *  Y  A  L  V  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  F  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  S  P  P  P  I  S  Q  G  K  H  N  N  G  P  F  R  L  F  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  S  H  H  P  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  V  W  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  N  Q  A  *  A  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  *  L  P  W  *  S  H  L  A  L  L  L  L  P  L  S  R  S  L  P  L  L  E  K  I  S  L  *  L  L  P  V  R  L  K  S  A  T  L  I  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  P  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  Y  V  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  Q  *  P  H  V  V  P  P  E  S  E  V  L  V  Q  K  T  L  E  V  P  N  L  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  F  L  G  *  V  G  V  A  I  P  H  S  A  L  A  H  I  P  H  P  P  L  L  L  L  L  P  *  S  V  E  E  S  P  S  *  H  Q  M  G  *  V  I  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  T  L  L   </first_frame>
            <second_frame>  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  *  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  I  P  F  T  N  H  F  L  S  T  K  K  R  D  D  T  H  W  F  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  S  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  L  R  S  P  R  E  S  I  T  M  G  P  F  V  C  L  S  V  A  P  T  M  L  *  C  S  G  S  N  F  P  I  T  P  V  I  L  V  T  T  I  T  S  T  T  M  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  R  I  K  H  R  P  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  K  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  S  C  H  G  E  V  I  W  L  Y  S  F  Y  L  Y  H  E  V  Y  H  F  L  K  R  F  R  C  S  C  Y  L  *  G  *  N  P  Q  L  *  S  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  L  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  L  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  R  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  F  W  G  R  L  G  W  Q  S  L  I  L  H  L  L  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  R  P  S  I  R  W  A  R  *  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  *  R  C  S  </second_frame>
            <third_frame>   N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  Y  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  E  I  T  K  S  T  *  V  F  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  V  S  A  S  D  L  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  I  F  P  S  P  R  S  F  W  *  P  P  L  P  R  P  P  C  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  N  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  V  A  M  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  *  K  D  F  V  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  C  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  L  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  A  V  A  A  C  C  T  S  G  V  *  G  A  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  Y  S  P  S  S  P  S  L  I  T  S  L  V  G  G  G  V  T  V  L  A  S  D  G  L  G  D  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  D  A  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23564" stop="23977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDWRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSRSSRMLYLRSLRCWCRKHWRCLTLIRQPTKISENLIDHFWGRLGWQSLILHLLIFPILPFSYYFLSRWRSHRPSIRWAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23181" stop="23462"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFVVAATCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDSARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22763" stop="23017"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSNFPITPVILVTTITSTTMSSRITASTMTTSTSSYWGSITLFGTIPPNMSSLPTSITLSRIKHRPLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="24796" PGL_stop="25125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24796" e_stop="25125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="24796" e_stop="25125" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24796" stop="25125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCTCTCAATATTCATTAATCCTCTTGTGTCGATATATGACACTCCGATCCCCCTAAATCTACGTGTCGGTTC</gDNA_template>
            <first_frame> R  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  D  I  *  H  S  D  P  P  K  S  T  C  R  F </first_frame>
            <second_frame>  G  Y  *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  L  S  I  F  I  N  P  L  V  S  I  Y  D  T  P  I  P  L  N  L  R  V  G   </second_frame>
            <third_frame>   G  T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  S  Q  Y  S  L  I  L  L  C  R  Y  M  T  L  R  S  P  *  I  Y  V  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="26235" PGL_stop="25553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26235" e_stop="25553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="26235" e_stop="25553" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26235" stop="25553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAAAAACAGGCTGGGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGTGATGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCTGTCACAGACTGCGTAATCCTAGTCTGGATCGGATTTCCTTATGCGTTTTAAGGGGCGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAACACAAAGCTTGGGAAATTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAA</gDNA_template>
            <first_frame> W  K  N  R  L  G  R  R  N  P  R  R  T  V  M  S  T  T  D  R  R  G  V  S  F  Q  N  T  *  K  F  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  R  A  *  R  T  V  T  D  S  L  V  E  I  E  S  L  N  L  V  M  T  C  R  T  D  R  R  R  H  D  G  L  S  Q  T  A  *  S  *  S  G  S  D  F  L  M  R  F  K  G  R  F  *  L  F  L  L  *  L  *  S  *  W  V  N  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  K  L  I  S  G  L  L  L  P  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G  F  E  *  R  K  *  K  E  Q  E  K  E  R  E  S  R  T  R  K  R  I  E  R  E  E  K  T  Q  S  L  G  N  C  L  L  D  H  *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L   </first_frame>
            <second_frame>  G  K  T  G  W  D  D  G  T  H  D  G  P  S  *  A  R  R  T  V  E  G  S  R  F  K  T  L  R  N  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  G  R  D  G  P  S  Q  T  L  W  W  K  L  S  L  *  T  L  *  *  P  A  G  R  T  V  A  G  T  T  G  C  H  R  L  R  N  P  S  L  D  R  I  S  L  C  V  L  R  G  V  F  D  Y  S  C  F  N  Y  K  V  S  G  L  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E  G  L  N  K  E  N  R  K  N  K  R  K  R  E  K  V  E  R  E  R  G  S  N  E  R  K  K  H  K  A  W  E  I  A  C  L  I  T  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  </second_frame>
            <third_frame>   E  K  Q  A  G  T  T  E  P  T  T  D  R  H  E  H  D  G  P  S  R  G  L  V  S  K  H  L  E  I  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T  G  V  T  D  R  H  R  L  F  G  G  N  *  V  S  E  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  A  V  T  D  C  V  I  L  V  W  I  G  F  P  Y  A  F  *  G  A  F  L  T  I  P  A  L  I  I  K  L  V  G  *  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  A  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  V  *  I  K  K  I  E  R  T  R  E  R  E  R  K  S  N  E  K  E  D  R  T  R  G  K  N  T  K  L  G  K  L  L  A  *  S  L  I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26233" stop="26039"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQAGTTEPTTDRHEHDGPSRGLVSKHLEILKLGTENRLSELRNGMAGRTVTGVTDRHRLFGGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="25728" PGL_stop="27208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25728" e_stop="26277"/>
            <exon e_start="26570" e_stop="26594"/>
            <exon e_start="27087" e_stop="27208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.804" e_score="0.935"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.640"/>
          <exon-only e_score="0.588"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="25728" e_stop="26277" e_length="550"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.804">
            <gDNA_intron_boundary i_start="26278" i_stop="26569" i_length="292"/>
          </intron>
          <exon e_serial="2" e_score="0.640">
            <gDNA_exon_boundary e_start="26570" e_stop="26594" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26595" i_stop="27086" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="0.588">
            <gDNA_exon_boundary e_start="27087" e_stop="27208" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25728" stop="26277"/>
              <exon start="26570" stop="26594"/>
              <exon start="27087" stop="27208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTAC : ATTTTTTTTTTTTAAAAATAAATAG : TAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> F  L  S  L  S  L  V  L  S  I  F  F  I  Q  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  T  N  F  I  I  K  A  G  I  V  K  N  A  P  *  N  A  *  G  N  P  I  Q  T  R  I  T  Q  S  V  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  L  D  G  P  S  C  S  *  R  S  V  V  G  S  V  V  P  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L   : H  F  F  F  L  K  I  N  S :   K  I  Y  Y  K  I  *  K  I  E  K  K  K  I  *  I  N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  F  S  L  F  L  L  F  F  L  F  S  L  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  Q  E  *  S  K  T  P  L  K  T  H  K  E  I  R  S  R  L  G  L  R  S  L  *  Q  P  V  V  P  A  T  V  R  P  A  G  H  H  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  P  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  E  F  L  S  V  L  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  G  R  Y  :  I  F  F  F  *  K  *  I   : V  K  Y  I  I  K  Y  K  K  L  K  K  K  K  Y  K  L  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   S  L  S  F  S  C  S  F  Y  F  L  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  H  *  L  Y  N  *  S  R  N  S  Q  K  R  P  L  K  R  I  R  K  S  D  P  D  *  D  Y  A  V  C  D  S  P  S  C  L  R  R  S  V  L  Q  V  I  T  R  F  R  D  S  I  S  T  K  E  S  V  T  V  R  H  A  R  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  P  R  R  S  V  V  L  M  T  V  R  R  G  F  R  R  P  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q  V  V  T :   F  F  F  F  K  N  K  *  :  *  N  I  L  *  N  I  K  N  *  K  K  K  N  I  N  *  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="33573" PGL_stop="38622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33573" e_stop="33689"/>
            <exon e_start="34063" e_stop="34183"/>
            <exon e_start="34266" e_stop="34312"/>
            <exon e_start="34416" e_stop="34486"/>
            <exon e_start="34579" e_stop="34692"/>
            <exon e_start="34776" e_stop="34951"/>
            <exon e_start="35029" e_stop="35117"/>
            <exon e_start="35834" e_stop="35951"/>
            <exon e_start="36175" e_stop="36248"/>
            <exon e_start="36398" e_stop="36445"/>
            <exon e_start="36667" e_stop="36835"/>
            <exon e_start="37581" e_stop="37703"/>
            <exon e_start="38062" e_stop="38622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="0.921" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.733" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.521" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.996" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.870" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="0.947"/>
          <exon-intron don_prob="0.506" acc_prob="0.703" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="33573" e_stop="33689" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33690" i_stop="34062" i_length="373"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34063" e_stop="34183" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34184" i_stop="34265" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34266" e_stop="34312" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34313" i_stop="34415" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34416" e_stop="34486" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.733">
            <gDNA_intron_boundary i_start="34487" i_stop="34578" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34579" e_stop="34692" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34693" i_stop="34775" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34776" e_stop="34951" e_length="176"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="34952" i_stop="35028" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="35029" e_stop="35117" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="0.521">
            <gDNA_intron_boundary i_start="35118" i_stop="35833" i_length="716"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="35834" e_stop="35951" e_length="118"/>
          </exon>
          <intron i_serial="8" don_prob="0.980" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35952" i_stop="36174" i_length="223"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="36175" e_stop="36248" e_length="74"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.772">
            <gDNA_intron_boundary i_start="36249" i_stop="36397" i_length="149"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="36398" e_stop="36445" e_length="48"/>
          </exon>
          <intron i_serial="10" don_prob="0.870" acc_prob="0.866">
            <gDNA_intron_boundary i_start="36446" i_stop="36666" i_length="221"/>
          </intron>
          <exon e_serial="11" e_score="0.947">
            <gDNA_exon_boundary e_start="36667" e_stop="36835" e_length="169"/>
          </exon>
          <intron i_serial="11" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36836" i_stop="37580" i_length="745"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="37581" e_stop="37703" e_length="123"/>
          </exon>
          <intron i_serial="12" don_prob="0.506" acc_prob="0.703">
            <gDNA_intron_boundary i_start="37704" i_stop="38061" i_length="358"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="38062" e_stop="38622" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33573" stop="33689"/>
              <exon start="34063" stop="34183"/>
              <exon start="34266" stop="34312"/>
              <exon start="34416" stop="34486"/>
              <exon start="34579" stop="34692"/>
              <exon start="34776" stop="34951"/>
              <exon start="35029" stop="35117"/>
              <exon start="35834" stop="35951"/>
              <exon start="36175" stop="36248"/>
              <exon start="36398" stop="36445"/>
              <exon start="36667" stop="36835"/>
              <exon start="37581" stop="37637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36777" stop="36835"/>
              <exon start="37581" stop="37703"/>
              <exon start="38062" stop="38622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584231" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTTTGTTTGAACTCTTTTTTTTTTCACTAGCTCAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAA : GTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAAT : CATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAA : GCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAAT : ATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTG : ATATTTTTGAGGTTGTAAAGGAAGATGGCACAGTTCTTGCAATGAAGTTGCACAGACTTGGTAGGGTTTCTTTTAGGGCAGTCAAATCGAAACGTGACTATTTGAGGCATCGTAGTAGCTACAATTGGCTGTACTTGTCCCGACTTGCTGCTTTGAAAGAGTTTGCTTTTATGAAG : GCACTAGAAGAACATGGATTTCCTGTTCCTCAGGCTGTGGATTGCAACCGACATTGTGTGATTATGTCACTTGTCCCAGGCTATCCACT : TGTGCAGGTTAGGGAGCTGCAAAACCCAGATGTGGTTTTTGAAACAATCATCGCTGCTGTTATTCGTTTGGCAGAACACGGGCTTATTCACTGTGATTTTAATGAATTTAACATAATG : ATTGATGATGATGAAAAGGTCACCATAATTGATTTCCCACAAATGGTGTCAGTCTCTCATCCTAACGCTCAGAT : GTACTTTGATCGTGATGTGGAGTGCATCTATAAGTTCTTTGCAAAGCG : GTACAATATGTCCTTTGATGAAAATGAAAATGATTCTGATGGTTTGGAGGTTGACATAAATGAAGTTGGTCGCCCCCAATTTTCTGAAATAAACAAGAACAGCGGTTTCTTGGACAAAGAACTTGCTGCCAGTGGTTTTACGAGAAAGGATCAAGATGAGCTTGAAAAG : TTGATTGAGGGAGAACTTGAAAATCATTCAGATTCTGACGATGAAGGAACTGCTGATGAAGAAGATGAAGAAGACATTAACAACACAAACGTCAAGCAGCTCGAATCCTTGGACTTGGCGAAG : GAAGACGTTAATCATCAAACTGGGGATGATAAGCACGACGATAACCATCAAGTTGGGGATGAAAATGATCCCGAGGAAGAGGAAGAGGCCGAGTCTGAAGATGATCCTGAACTAGAGAAAAGCCTGAGCAAGCAAAGGAAGAAGGCTATCCAGGCTGCCCATCGGGGCAAGAGGAACTTTGCCTCGAGGAATACATACAAAGACAAAGGTGGGAAATCCTCACAGAACTCAAAGGTCCATAAGCAATTGAGTGGTTGGTGAAGTATACACTATTAAAGAATATGCAATCCAGTGTCTTTGAAGGCCAATCCACGGAATTTCTTTTGCGCGAAGGTGTTGAAGAGAATATCATCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGATATATACATTGTCCTAAATGTCTGTCTGGTGTATATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGTATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAACTACTTCAGAT</gDNA_template>
            <first_frame> R  F  V  *  T  L  F  F  F  T  S  S  K  A  F  N  F  S  S  N  F  L  Q  Q  L  S  F  S  L  L  E  V  S  I  I  F  H  *  Q  :  V  L  A  I  I  N  S  S  K  R  G  *  D  E  V  G  C  *  R  F  E  I  P  F  E  R  *  F  Q  G  P  Y  C  R  *  D  G  N  A  Q   : S  *  D  C  A  L  *  A  H  *  P  D  C  S  P  Q  :  A  W  R  H  I  *  S  V  E  E  F  A  K  A  Q  I  S  A  S  *  L  F  *  I :   *  W  I  S  T  H  L  P  W  L  *  F  P  C  D  K  D  F  G  *  S  W  D  V  *  W  S  G  S  S  N  W  C  W  K  R  V  * :   Y  F  *  G  C  K  G  R  W  H  S  S  C  N  E  V  A  Q  T  W  *  G  F  F  *  G  S  Q  I  E  T  *  L  F  E  A  S  *  *  L  Q  L  A  V  L  V  P  T  C  C  F  E  R  V  C  F  Y  E   : G  T  R  R  T  W  I  S  C  S  S  G  C  G  L  Q  P  T  L  C  D  Y  V  T  C  P  R  L  S  T  :  C  A  G  *  G  A  A  K  P  R  C  G  F  *  N  N  H  R  C  C  Y  S  F  G  R  T  R  A  Y  S  L  *  F  *  *  I  *  H  N   : D  *  *  *  *  K  G  H  H  N  *  F  P  T  N  G  V  S  L  S  S  *  R  S  D  :  V  L  *  S  *  C  G  V  H  L  *  V  L  C  K  A  :  V  Q  Y  V  L  *  *  K  *  K  *  F  *  W  F  G  G  *  H  K  *  S  W  S  P  P  I  F  *  N  K  Q  E  Q  R  F  L  G  Q  R  T  C  C  Q  W  F  Y  E  K  G  S  R  *  A  *  K   : V  D  *  G  R  T  *  K  S  F  R  F  *  R  *  R  N  C  *  *  R  R  *  R  R  H  *  Q  H  K  R  Q  A  A  R  I  L  G  L  G  E   : G  R  R  *  S  S  N  W  G  *  *  A  R  R  *  P  S  S  W  G  *  K  *  S  R  G  R  G  R  G  R  V  *  R  *  S  *  T  R  E  K  P  E  Q  A  K  E  E  G  Y  P  G  C  P  S  G  Q  E  E  L  C  L  E  E  Y  I  Q  R  Q  R  W  E  I  L  T  E  L  K  G  P  *  A  I  E  W  L  V  K  Y  T  L  L  K  N  M  Q  S  S  V  F  E  G  Q  S  T  E  F  L  L  R  E  G  V  E  E  N  I  I  I  *  T  S  Y  R  *  V  T  E  *  F  S  F  D  S  D  I  Y  I  V  L  N  V  C  L  V  Y  I  *  N  F  G  S  M  F  G  R  T  Y  R  L  K  I  V  K  C  V  F  V  V  Y  *  *  L  *  I  K  N  S  Y  V  V  V  K  N  Y  F  R  </first_frame>
            <second_frame>  G  L  F  E  L  F  F  F  S  L  A  Q  K  P  S  I  F  R  V  I  F  F  S  N  S  V  F  L  F  L  K  F  Q  *  S  S  I  N  K :   C  *  Q  S  L  T  A  A  K  E  D  K  M  K  L  D  V  N  V  L  R  Y  L  S  K  D  D  F  R  V  L  T  A  V  E  M  G  M  R  N  :  H  E  I  V  P  C  E  L  I  D  R  I  A  R  L  K :   H  G  G  T  Y  K  V  L  K  N  L  L  K  H  K  L  V  H  H  D  S  S  K   : Y  D  G  F  R  L  T  Y  L  G  Y  D  F  L  A  I  K  T  L  V  N  R  G  M  F  N  G  V  G  R  Q  I  G  V  G  K  E  S   : D  I  F  E  V  V  K  E  D  G  T  V  L  A  M  K  L  H  R  L  G  R  V  S  F  R  A  V  K  S  K  R  D  Y  L  R  H  R  S  S  Y  N  W  L  Y  L  S  R  L  A  A  L  K  E  F  A  F  M  K  :  A  L  E  E  H  G  F  P  V  P  Q  A  V  D  C  N  R  H  C  V  I  M  S  L  V  P  G  Y  P  L :   V  Q  V  R  E  L  Q  N  P  D  V  V  F  E  T  I  I  A  A  V  I  R  L  A  E  H  G  L  I  H  C  D  F  N  E  F  N  I  M  :  I  D  D  D  E  K  V  T  I  I  D  F  P  Q  M  V  S  V  S  H  P  N  A  Q  M :   Y  F  D  R  D  V  E  C  I  Y  K  F  F  A  K  R :   Y  N  M  S  F  D  E  N  E  N  D  S  D  G  L  E  V  D  I  N  E  V  G  R  P  Q  F  S  E  I  N  K  N  S  G  F  L  D  K  E  L  A  A  S  G  F  T  R  K  D  Q  D  E  L  E  K  :  L  I  E  G  E  L  E  N  H  S  D  S  D  D  E  G  T  A  D  E  E  D  E  E  D  I  N  N  T  N  V  K  Q  L  E  S  L  D  L  A  K  :  E  D  V  N  H  Q  T  G  D  D  K  H  D  D  N  H  Q  V  G  D  E  N  D  P  E  E  E  E  E  A  E  S  E  D  D  P  E  L  E  K  S  L  S  K  Q  R  K  K  A  I  Q  A  A  H  R  G  K  R  N  F  A  S  R  N  T  Y  K  D  K  G  G  K  S  S  Q  N  S  K  V  H  K  Q  L  S  G  W  *  S  I  H  Y  *  R  I  C  N  P  V  S  L  K  A  N  P  R  N  F  F  C  A  K  V  L  K  R  I  S  S  Y  K  L  A  I  D  K  L  L  S  D  S  V  S  T  Q  I  Y  T  L  S  *  M  S  V  W  C  I  F  K  I  L  V  A  C  L  A  E  H  I  G  S  R  L  L  N  V  Y  L  L  F  T  N  D  Y  K  S  R  T  A  M  *  L  *  R  T  T  S  D </second_frame>
            <third_frame>   V  C  L  N  S  F  F  F  H  *  L  K  S  L  Q  F  F  E  *  F  S  S  A  T  Q  F  F  S  S  *  S  F  N  N  L  P  L  T   : S  V  S  N  H  *  Q  Q  Q  K  R  I  R  *  S  W  M  L  T  F  *  D  T  F  R  K  M  I  S  G  S  L  L  P  L  R  W  E  C  A  I :   M  R  L  C  L  V  S  S  L  T  G  L  L  A  S   : S  M  E  A  H  I  K  C  *  R  I  C  *  S  T  N  *  C  I  M  T  L  L  N  :  M  M  D  F  D  S  P  T  L  V  M  I  S  L  R  *  R  L  W  L  I  V  G  C  L  M  E  W  V  V  K  L  V  L  E  K  S  L  :  I  F  L  R  L  *  R  K  M  A  Q  F  L  Q  *  S  C  T  D  L  V  G  F  L  L  G  Q  S  N  R  N  V  T  I  *  G  I  V  V  A  T  I  G  C  T  C  P  D  L  L  L  *  K  S  L  L  L  *  R :   H  *  K  N  M  D  F  L  F  L  R  L  W  I  A  T  D  I  V  *  L  C  H  L  S  Q  A  I  H   : L  C  R  L  G  S  C  K  T  Q  M  W  F  L  K  Q  S  S  L  L  L  F  V  W  Q  N  T  G  L  F  T  V  I  L  M  N  L  T  *  * :   L  M  M  M  K  R  S  P  *  L  I  S  H  K  W  C  Q  S  L  I  L  T  L  R   : C  T  L  I  V  M  W  S  A  S  I  S  S  L  Q  S   : G  T  I  C  P  L  M  K  M  K  M  I  L  M  V  W  R  L  T  *  M  K  L  V  A  P  N  F  L  K  *  T  R  T  A  V  S  W  T  K  N  L  L  P  V  V  L  R  E  R  I  K  M  S  L  K  S :   *  L  R  E  N  L  K  I  I  Q  I  L  T  M  K  E  L  L  M  K  K  M  K  K  T  L  T  T  Q  T  S  S  S  S  N  P  W  T  W  R  R :   K  T  L  I  I  K  L  G  M  I  S  T  T  I  T  I  K  L  G  M  K  M  I  P  R  K  R  K  R  P  S  L  K  M  I  L  N  *  R  K  A  *  A  S  K  G  R  R  L  S  R  L  P  I  G  A  R  G  T  L  P  R  G  I  H  T  K  T  K  V  G  N  P  H  R  T  Q  R  S  I  S  N  *  V  V  G  E  V  Y  T  I  K  E  Y  A  I  Q  C  L  *  R  P  I  H  G  I  S  F  A  R  R  C  *  R  E  Y  H  H  I  N  *  L  S  I  S  Y  *  V  I  Q  F  R  L  R  Y  I  H  C  P  K  C  L  S  G  V  Y  L  K  F  W  *  H  V  W  Q  N  I  *  A  Q  D  C  *  M  C  I  C  C  L  L  M  I  I  N  Q  E  Q  L  C  S  C  E  E  L  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34070" stop="34183"/>
                    <exon start="34266" stop="34312"/>
                    <exon start="34416" stop="34486"/>
                    <exon start="34579" stop="34692"/>
                    <exon start="34776" stop="34951"/>
                    <exon start="35029" stop="35117"/>
                    <exon start="35834" stop="35951"/>
                    <exon start="36175" stop="36248"/>
                    <exon start="36398" stop="36445"/>
                    <exon start="36667" stop="36835"/>
                    <exon start="37581" stop="37703"/>
                    <exon start="38062" stop="38322"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1401</number_coding_nucleotides>
                  <number_encoded_amino_acids>467</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLTAAKEDKMKLDVNVLRYLSKDDFRVLTAVEMGMRNHEIVPCELIDRIARLKHGGTYKVLKNLLKHKLVHHDSSKYDGFRLTYLGYDFLAIKTLVNRGMFNGVGRQIGVGKESDIFEVVKEDGTVLAMKLHRLGRVSFRAVKSKRDYLRHRSSYNWLYLSRLAALKEFAFMKALEEHGFPVPQAVDCNRHCVIMSLVPGYPLVQVRELQNPDVVFETIIAAVIRLAEHGLIHCDFNEFNIMIDDDEKVTIIDFPQMVSVSHPNAQMYFDRDVECIYKFFAKRYNMSFDENENDSDGLEVDINEVGRPQFSEINKNSGFLDKELAASGFTRKDQDELEKLIEGELENHSDSDDEGTADEEDEEDINNTNVKQLESLDLAKEDVNHQTGDDKHDDNHQVGDENDPEEEEEAESEDDPELEKSLSKQRKKAIQAAHRGKRNFASRNTYKDKGGKSSQNSKVHKQLSGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="42082" PGL_stop="38817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42082" e_stop="41979"/>
            <exon e_start="41874" e_stop="41801"/>
            <exon e_start="39682" e_stop="38817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.454" acc_prob="0.987" e_score="0.990"/>
          <exon-intron don_prob="0.922" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="42082" e_stop="41979" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.454" acc_prob="0.987">
            <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41874" e_stop="41801" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.922" acc_prob="0.980">
            <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39682" e_stop="38817" e_length="866"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42082" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="38817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTTACTTAATAGGCAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG : AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG : GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTAATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTTCTGTATCTGTTGTACTTTATTATGTGTTGTTTTGCCTCCAAAAGAAGTCGTAATGTGATTGCAGATTTGTGATGTTTAATCTCAGAT</gDNA_template>
            <first_frame> S  F  T  *  *  A  K  T  F  V  L  D  Q  I  L  I  H  H  I  L  L  F  I  Q  K  N  *  E  M  G  L  L  S  N  R :   I  D  R  S  S  L  K  P  G  D  H  I  Y  S  W  R  T  A  Y  I  Y  A  H  H   : G  I  Y  V  G  D  N  K  V  I  H  F  T  R  R  G  Q  E  V  G  T  G  T  I  L  D  H  I  L  V  S  S  I  P  N  R  S  T  V  P  C  T  V  C  T  P  P  S  D  G  H  G  V  V  S  S  C  L  D  C  F  L  A  G  G  I  L  Y  R  F  E  Y  A  V  T  P  A  I  F  L  A  K  A  R  G  G  T  C  T  L  A  V  S  D  P  D  D  I  V  V  H  R  A  N  Y  L  L  T  N  G  F  G  L  Y  N  V  F  K  N  N  C  E  D  F  A  I  Y  S  K  T  G  L  L  V  V  D  D  S  T  M  G  Q  S  G  Q  A  V  S  I  I  G  G  P  L  A  A  V  M  S  T  P  L  R  L  V  T  T  N  V  Y  G  M  V  A  T  A  V  G  V  Y  C  A  S  R  Y  A  A  D  I  G  M  R  R  D  V  M  K  V  S  A  E  D  L  T  T  R  L  T  T  G  L  L  R  V  V  E  P  S  L  A  V  L  P  P  T  T  S  *  Y  H  F  L  I  C  N  N  A  L  *  S  R  K  V  S  F  L  F  N  I  H  G  S  F  *  L  Y  V  L  R  L  L  Y  L  L  Y  F  I  M  C  C  F  A  S  K  R  S  R  N  V  I  A  D  L  *  C  L  I  S  D </first_frame>
            <second_frame>  H  L  L  N  R  Q  K  L  L  F  L  I  K  F  *  F  I  I  S  F  C  L  S  K  K  I  K  K  W  G  C  F  L  I   : E  L  I  E  A  A  S  N  L  E  I  I  F  I  L  G  V  L  L  I  F  M  P  I  M  :  V  S  M  L  G  I  I  K  S  F  T  S  Q  D  V  V  K  K  *  E  L  E  P  F  W  I  I  F  W  *  V  Q  F  Q  I  D  L  L  F  L  V  L  F  A  P  H  H  Q  M  V  T  E  *  S  R  H  V  W  T  A  F  L  L  E  V  S  S  I  A  L  N  M  L  *  L  L  L  S  S  S  Q  K  H  V  E  E  H  A  L  L  Q  S  R  I  Q  M  T  L  *  S  I  E  Q  T  T  S  L  Q  M  A  L  D  C  T  M  C  S  R  T  T  V  R  T  S  P  S  T  L  R  Q  D  Y  S  W  *  M  I  V  Q  W  D  K  V  D  K  Q  C  L  *  S  V  D  H  L  Q  L  L  C  Q  H  H  Y  V  *  S  P  P  T  F  M  G  W  *  Q  Q  L  L  G  S  I  V  P  V  A  M  Q  L  I  L  V  C  G  G  M  *  *  K  Y  L  Q  K  I  *  Q  Q  G  *  Q  L  A  C  S  G  L  L  N  L  V  S  Q  F  C  H  L  R  L  A  S  I  I  S  *  Y  V  I  T  R  Y  R  V  G  K  *  A  F  F  L  I  Y  M  G  A  S  S  Y  M  S  *  G  F  C  I  C  C  T  L  L  C  V  V  L  P  P  K  E  V  V  M  *  L  Q  I  C  D  V  *  S  Q   </second_frame>
            <third_frame>   I  Y  L  I  G  K  N  F  C  S  *  S  N  F  D  S  S  Y  P  S  V  Y  P  K  K  L  R  N  G  V  A  F  *  *  :  N  *  *  K  Q  P  Q  T  W  R  S  Y  L  F  L  A  Y  C  L  Y  L  C  P  S  W :   Y  L  C  W  G  *  *  S  H  S  L  H  K  T  W  S  R  S  R  N  W  N  H  S  G  S  Y  F  G  K  F  N  S  K  S  I  Y  C  S  L  Y  C  L  H  P  T  I  R  W  S  R  S  S  L  V  M  F  G  L  L  S  C  W  R  Y  P  L  S  L  *  I  C  C  N  S  C  Y  L  P  R  K  S  T  W  R  N  M  H  S  C  S  L  G  S  R  *  H  C  S  P  S  S  K  L  P  P  Y  K  W  L  W  T  V  Q  C  V  Q  E  Q  L  *  G  L  R  H  L  L  *  D  R  T  T  R  G  R  *  *  Y  N  G  T  K  W  T  S  S  V  Y  N  R  W  T  T  C  S  C  Y  V  N  T  T  T  S  S  H  H  Q  R  L  W  D  G  S  N  S  C  W  G  L  L  C  Q  S  L  C  S  *  Y  W  Y  A  E  G  C  D  E  S  I  C  R  R  S  N  N  K  A  N  N  W  L  A  P  G  C  *  T  *  S  R  S  F  A  T  Y  D  *  L  V  S  F  L  D  M  *  *  R  A  I  E  S  E  S  E  L  S  F  *  Y  T  W  E  L  L  A  I  C  L  E  A  S  V  S  V  V  L  Y  Y  V  L  F  C  L  Q  K  K  S  *  C  D  C  R  F  V  M  F  N  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42001" stop="41979"/>
                    <exon start="41874" stop="41801"/>
                    <exon start="39682" stop="39000"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDNKVIHFTRRGQEVGTGTILDHILVSSIPNRSTVPCTVCTPPSDGHGVVSSCLDCFLAGGILYRFEYAVTPAIFLAKARGGTCTLAVSDPDDIVVHRANYLLTNGFGLYNVFKNNCEDFAIYSKTGLLVVDDSTMGQSGQAVSIIGGPLAAVMSTPLRLVTTNVYGMVATAVGVYCASRYAADIGMRRDVMKVSAEDLTTRLTTGLLRVVEPSLAVLPPTTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="39561" PGL_stop="40280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39561" e_stop="40280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39561" e_stop="40280" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39561" stop="40280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGGAACAGTAGATCGATTTGGAATTGAACTTACCAAAATATGATCCAGAATGGTTCCAGTTCCTACTTCTTGACCACGTCTTGTGAAGTGAATGACTTTATTATCCCCAACATAGATACCTGTTATTTAGGCATATCCAATATTATTACAAAATAATCTTTGTTTTCTCTAGTTTATTAATCAAGGTAATCAGGAAACAAGGGATGGGGTTGGGGTGTATAATAACCTTTTTTTTGAGGATGCCCGGGAACAACTCCTAGGTCAATTAAGGAGAAAATGTTGGAACCTCATGGGTAAGGATAGATGGTCGAAGTGATTCAGAAGCATAAACAAGATCAAACTTAAATAACATGCCAAAGCGCAAACGTTTCGATAACATTATCTATGCACTTCAAATCTTCTTTAGACTAATGTGAATACTGGCAACAAGCCAATTCCCTTGAACTTACAGAAAGACCGATAACCCTTCACTGTAGCAAGCAAATTACTACAGGATTTTACGAATAACATCAGTGGATCATCTTCCGTTCTATAATTAACTGCTTTATTAAGTGAATGAGCTACACCCCATATTGGCAAAGCCCTCTAAGGTCTATCACTAAGCACATAGTCAAGAAAAAGGTAACCCCTGAGAATTACTTGATCAAAGAAATGGATCACTCACATAACGCATTTCGTTCCTAATTGCTTATGATAACCGCGCATTCCACAAGAGGT</gDNA_template>
            <first_frame> T  R  N  S  R  S  I  W  N  *  T  Y  Q  N  M  I  Q  N  G  S  S  S  Y  F  L  T  T  S  C  E  V  N  D  F  I  I  P  N  I  D  T  C  Y  L  G  I  S  N  I  I  T  K  *  S  L  F  S  L  V  Y  *  S  R  *  S  G  N  K  G  W  G  W  G  V  *  *  P  F  F  *  G  C  P  G  T  T  P  R  S  I  K  E  K  M  L  E  P  H  G  *  G  *  M  V  E  V  I  Q  K  H  K  Q  D  Q  T  *  I  T  C  Q  S  A  N  V  S  I  T  L  S  M  H  F  K  S  S  L  D  *  C  E  Y  W  Q  Q  A  N  S  L  E  L  T  E  R  P  I  T  L  H  C  S  K  Q  I  T  T  G  F  Y  E  *  H  Q  W  I  I  F  R  S  I  I  N  C  F  I  K  *  M  S  Y  T  P  Y  W  Q  S  P  L  R  S  I  T  K  H  I  V  K  K  K  V  T  P  E  N  Y  L  I  K  E  M  D  H  S  H  N  A  F  R  S  *  L  L  M  I  T  A  H  S  T  R  G </first_frame>
            <second_frame>  Q  G  T  V  D  R  F  G  I  E  L  T  K  I  *  S  R  M  V  P  V  P  T  S  *  P  R  L  V  K  *  M  T  L  L  S  P  T  *  I  P  V  I  *  A  Y  P  I  L  L  Q  N  N  L  C  F  L  *  F  I  N  Q  G  N  Q  E  T  R  D  G  V  G  V  Y  N  N  L  F  F  E  D  A  R  E  Q  L  L  G  Q  L  R  R  K  C  W  N  L  M  G  K  D  R  W  S  K  *  F  R  S  I  N  K  I  K  L  K  *  H  A  K  A  Q  T  F  R  *  H  Y  L  C  T  S  N  L  L  *  T  N  V  N  T  G  N  K  P  I  P  L  N  L  Q  K  D  R  *  P  F  T  V  A  S  K  L  L  Q  D  F  T  N  N  I  S  G  S  S  S  V  L  *  L  T  A  L  L  S  E  *  A  T  P  H  I  G  K  A  L  *  G  L  S  L  S  T  *  S  R  K  R  *  P  L  R  I  T  *  S  K  K  W  I  T  H  I  T  H  F  V  P  N  C  L  *  *  P  R  I  P  Q  E   </second_frame>
            <third_frame>   K  E  Q  *  I  D  L  E  L  N  L  P  K  Y  D  P  E  W  F  Q  F  L  L  L  D  H  V  L  *  S  E  *  L  Y  Y  P  Q  H  R  Y  L  L  F  R  H  I  Q  Y  Y  Y  K  I  I  F  V  F  S  S  L  L  I  K  V  I  R  K  Q  G  M  G  L  G  C  I  I  T  F  F  L  R  M  P  G  N  N  S  *  V  N  *  G  E  N  V  G  T  S  W  V  R  I  D  G  R  S  D  S  E  A  *  T  R  S  N  L  N  N  M  P  K  R  K  R  F  D  N  I  I  Y  A  L  Q  I  F  F  R  L  M  *  I  L  A  T  S  Q  F  P  *  T  Y  R  K  T  D  N  P  S  L  *  Q  A  N  Y  Y  R  I  L  R  I  T  S  V  D  H  L  P  F  Y  N  *  L  L  Y  *  V  N  E  L  H  P  I  L  A  K  P  S  K  V  Y  H  *  A  H  S  Q  E  K  G  N  P  *  E  L  L  D  Q  R  N  G  S  L  T  *  R  I  S  F  L  I  A  Y  D  N  R  A  F  H  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="43624" PGL_stop="44246"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43624" e_stop="44246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="43624" e_stop="44246" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43624" stop="44246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACAGAGCAATTGCTAAAACCCTAGAAAAAAATGATGAATTTCAAGCCGCCGGAGACTAAAACGACGCCGTCATCGTCGTCGTATTCGTCTACGGCGGAGAAAGCGTTTTCATTGATATCTAAAGGATGGAAAGAGGTTCGTTCTTCCGCCGACGCAGATCTACAACTCATCAGAAACAGAGCTAAGGAGCTCGAAAACTTCCTTAGCTCAGTACCAACAATTACCGCTACCGCAACTGCAACTGCAACTGCAACTACTCCGGGAGAAATTGATTTTGTTAAGAAGCTCCGTCCAAAATTATCGGAAATACGTAGGGCTTATTCGTCGCCGGACTTCAATTGGGCACCGAAAGGGAAGCTTAGGATCGATTTATCGGGAATTACGAATGCGATTGTGACGGAATCGGAAGATGAGAAATTGGGGAAATGGAGAAGAGAGAAGAGGTTTAAGGATGAAAAGCAATTTGGGGAATTGAGTAATTGGGAACCAATTAGGGCTTTTAGGAATCGATTAAGAGAGATGGAGGTTGAGATTAAGAGTTCGAATGCGTCTTCTCCGGTGGAGATTTTCGAAGGGATTAAGAATAGTGAATTTATGGAGAAAGTAAAATCGAGCTTC</gDNA_template>
            <first_frame> K  K  Q  S  N  C  *  N  P  R  K  K  *  *  I  S  S  R  R  R  L  K  R  R  R  H  R  R  R  I  R  L  R  R  R  K  R  F  H  *  Y  L  K  D  G  K  R  F  V  L  P  P  T  Q  I  Y  N  S  S  E  T  E  L  R  S  S  K  T  S  L  A  Q  Y  Q  Q  L  P  L  P  Q  L  Q  L  Q  L  Q  L  L  R  E  K  L  I  L  L  R  S  S  V  Q  N  Y  R  K  Y  V  G  L  I  R  R  R  T  S  I  G  H  R  K  G  S  L  G  S  I  Y  R  E  L  R  M  R  L  *  R  N  R  K  M  R  N  W  G  N  G  E  E  R  R  G  L  R  M  K  S  N  L  G  N  *  V  I  G  N  Q  L  G  L  L  G  I  D  *  E  R  W  R  L  R  L  R  V  R  M  R  L  L  R  W  R  F  S  K  G  L  R  I  V  N  L  W  R  K  *  N  R  A   </first_frame>
            <second_frame>  K  N  R  A  I  A  K  T  L  E  K  N  D  E  F  Q  A  A  G  D  *  N  D  A  V  I  V  V  V  F  V  Y  G  G  E  S  V  F  I  D  I  *  R  M  E  R  G  S  F  F  R  R  R  R  S  T  T  H  Q  K  Q  S  *  G  A  R  K  L  P  *  L  S  T  N  N  Y  R  Y  R  N  C  N  C  N  C  N  Y  S  G  R  N  *  F  C  *  E  A  P  S  K  I  I  G  N  T  *  G  L  F  V  A  G  L  Q  L  G  T  E  R  E  A  *  D  R  F  I  G  N  Y  E  C  D  C  D  G  I  G  R  *  E  I  G  E  M  E  K  R  E  E  V  *  G  *  K  A  I  W  G  I  E  *  L  G  T  N  *  G  F  *  E  S  I  K  R  D  G  G  *  D  *  E  F  E  C  V  F  S  G  G  D  F  R  R  D  *  E  *  *  I  Y  G  E  S  K  I  E  L  </second_frame>
            <third_frame>   K  T  E  Q  L  L  K  P  *  K  K  M  M  N  F  K  P  P  E  T  K  T  T  P  S  S  S  S  Y  S  S  T  A  E  K  A  F  S  L  I  S  K  G  W  K  E  V  R  S  S  A  D  A  D  L  Q  L  I  R  N  R  A  K  E  L  E  N  F  L  S  S  V  P  T  I  T  A  T  A  T  A  T  A  T  A  T  T  P  G  E  I  D  F  V  K  K  L  R  P  K  L  S  E  I  R  R  A  Y  S  S  P  D  F  N  W  A  P  K  G  K  L  R  I  D  L  S  G  I  T  N  A  I  V  T  E  S  E  D  E  K  L  G  K  W  R  R  E  K  R  F  K  D  E  K  Q  F  G  E  L  S  N  W  E  P  I  R  A  F  R  N  R  L  R  E  M  E  V  E  I  K  S  S  N  A  S  S  P  V  E  I  F  E  G  I  K  N  S  E  F  M  E  K  V  K  S  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43653" stop="44246"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMMNFKPPETKTTPSSSSYSSTAEKAFSLISKGWKEVRSSADADLQLIRNRAKELENFLSSVPTITATATATATATTPGEIDFVKKLRPKLSEIRRAYSSPDFNWAPKGKLRIDLSGITNAIVTESEDEKLGKWRREKRFKDEKQFGELSNWEPIRAFRNRLREMEVEIKSSNASSPVEIFEGIKNSEFMEKVKSSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="44536" PGL_stop="45665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44536" e_stop="45322"/>
            <exon e_start="45639" e_stop="45665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.989" e_score="0.973"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="44536" e_stop="45322" e_length="787"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.989">
            <gDNA_intron_boundary i_start="45323" i_stop="45638" i_length="316"/>
          </intron>
          <exon e_serial="2" e_score="0.889">
            <gDNA_exon_boundary e_start="45639" e_stop="45665" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44536" stop="45322"/>
              <exon start="45639" stop="45665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565348" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATACGCGTAAGGTCTGTATACACTTTATCCTCTACTTGTGGAATTACACGATAGGAGTAAGGTCTGCGTACACTCTATCCTTGCAGACTCTACTTGTGGGATTACATGATACGAGTAAGATCTGCGTACACTCTATTCTCTACTTGTGGGATTACATGATAGGAGTAAGGTCTGTGTACACTCTGTCCTTCGTAGACTCTACTTGTGAGATTACATTGGGTATGTCGTTGTTGTTGATTGTTATAAAAGAGAAAAGTGGTGGCTTTTTGGGCAAAAGAACCAAAAAGTTACTACCTTTTTCTTTTGTAGAAACAGCCCGAACAAAAGGAGTTCATGAAACTTTTTTTTTTGTCACAAATTTAAGTTTTGAACTTTTTGAGCCCATGCGACAATGTTAATGTTATGTTTATGTACGAGGAAGCAGAATTACTTAAAATAAGGCTAACTAGTTGGAGGTGATTTGCTTCACGGACTAGCTATGGAGGAATTATAGCACGAAGATTATCTTGTGTGAATTGTGATCTATATATATAGTTTTTACGCAGTCAATAATTTATGTAAGTGTTAGTTATACGAGTTTTACACTAGAAGCTAAAGTTGTACTAGTAATGTAGAGTTGTATGCCGAATTTTTTTAGAAGAGAGTTTTATATGAAACGTTGTATTAAAATTGATCCGACTTGCTACTTATCACGGCTTTCCTTTTCACATGATTAATCTGCTGTTTTTGTGTTTTGTCTAATGATTTTTCAGAAGTCAATTTGCAAGGAACCAGAAGAGTCGAAG : GGAGTTCCGCCACTGGACGTGCCAGAG</gDNA_template>
            <first_frame> *  Y  A  *  G  L  Y  T  L  Y  P  L  L  V  E  L  H  D  R  S  K  V  C  V  H  S  I  L  A  D  S  T  C  G  I  T  *  Y  E  *  D  L  R  T  L  Y  S  L  L  V  G  L  H  D  R  S  K  V  C  V  H  S  V  L  R  R  L  Y  L  *  D  Y  I  G  Y  V  V  V  V  D  C  Y  K  R  E  K  W  W  L  F  G  Q  K  N  Q  K  V  T  T  F  F  F  C  R  N  S  P  N  K  R  S  S  *  N  F  F  F  C  H  K  F  K  F  *  T  F  *  A  H  A  T  M  L  M  L  C  L  C  T  R  K  Q  N  Y  L  K  *  G  *  L  V  G  G  D  L  L  H  G  L  A  M  E  E  L  *  H  E  D  Y  L  V  *  I  V  I  Y  I  Y  S  F  Y  A  V  N  N  L  C  K  C  *  L  Y  E  F  Y  T  R  S  *  S  C  T  S  N  V  E  L  Y  A  E  F  F  *  K  R  V  L  Y  E  T  L  Y  *  N  *  S  D  L  L  L  I  T  A  F  L  F  T  *  L  I  C  C  F  C  V  L  S  N  D  F  S  E  V  N  L  Q  G  T  R  R  V  E   : G  S  S  A  T  G  R  A  R  </first_frame>
            <second_frame>  D  T  R  K  V  C  I  H  F  I  L  Y  L  W  N  Y  T  I  G  V  R  S  A  Y  T  L  S  L  Q  T  L  L  V  G  L  H  D  T  S  K  I  C  V  H  S  I  L  Y  L  W  D  Y  M  I  G  V  R  S  V  Y  T  L  S  F  V  D  S  T  C  E  I  T  L  G  M  S  L  L  L  I  V  I  K  E  K  S  G  G  F  L  G  K  R  T  K  K  L  L  P  F  S  F  V  E  T  A  R  T  K  G  V  H  E  T  F  F  F  V  T  N  L  S  F  E  L  F  E  P  M  R  Q  C  *  C  Y  V  Y  V  R  G  S  R  I  T  *  N  K  A  N  *  L  E  V  I  C  F  T  D  *  L  W  R  N  Y  S  T  K  I  I  L  C  E  L  *  S  I  Y  I  V  F  T  Q  S  I  I  Y  V  S  V  S  Y  T  S  F  T  L  E  A  K  V  V  L  V  M  *  S  C  M  P  N  F  F  R  R  E  F  Y  M  K  R  C  I  K  I  D  P  T  C  Y  L  S  R  L  S  F  S  H  D  *  S  A  V  F  V  F  C  L  M  I  F  Q  K  S  I  C  K  E  P  E  E  S  K  :  G  V  P  P  L  D  V  P  E </second_frame>
            <third_frame>   I  R  V  R  S  V  Y  T  L  S  S  T  C  G  I  T  R  *  E  *  G  L  R  T  L  Y  P  C  R  L  Y  L  W  D  Y  M  I  R  V  R  S  A  Y  T  L  F  S  T  C  G  I  T  *  *  E  *  G  L  C  T  L  C  P  S  *  T  L  L  V  R  L  H  W  V  C  R  C  C  *  L  L  *  K  R  K  V  V  A  F  W  A  K  E  P  K  S  Y  Y  L  F  L  L  *  K  Q  P  E  Q  K  E  F  M  K  L  F  F  L  S  Q  I  *  V  L  N  F  L  S  P  C  D  N  V  N  V  M  F  M  Y  E  E  A  E  L  L  K  I  R  L  T  S  W  R  *  F  A  S  R  T  S  Y  G  G  I  I  A  R  R  L  S  C  V  N  C  D  L  Y  I  *  F  L  R  S  Q  *  F  M  *  V  L  V  I  R  V  L  H  *  K  L  K  L  Y  *  *  C  R  V  V  C  R  I  F  L  E  E  S  F  I  *  N  V  V  L  K  L  I  R  L  A  T  Y  H  G  F  P  F  H  M  I  N  L  L  F  L  C  F  V  *  *  F  F  R  S  Q  F  A  R  N  Q  K  S  R  R :   E  F  R  H  W  T  C  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44537" stop="44935"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTRKVCIHFILYLWNYTIGVRSAYTLSLQTLLVGLHDTSKICVHSILYLWDYMIGVRSVYTLSFVDSTCEITLGMSLLLIVIKEKSGGFLGKRTKKLLPFSFVETARTKGVHETFFFVTNLSFELFEPMRQC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="45714" PGL_stop="47710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45714" e_stop="45726"/>
            <exon e_start="45816" e_stop="46288"/>
            <exon e_start="46384" e_stop="46650"/>
            <exon e_start="46827" e_stop="47176"/>
            <exon e_start="47448" e_stop="47710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.920" e_score="0.996"/>
          <exon-intron don_prob="0.920" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.929" e_score="0.997"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45714" e_stop="45726" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.970">
            <gDNA_intron_boundary i_start="45727" i_stop="45815" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="45816" e_stop="46288" e_length="473"/>
          </exon>
          <intron i_serial="2" don_prob="0.938" acc_prob="0.920">
            <gDNA_intron_boundary i_start="46289" i_stop="46383" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46384" e_stop="46650" e_length="267"/>
          </exon>
          <intron i_serial="3" don_prob="0.920" acc_prob="0.978">
            <gDNA_intron_boundary i_start="46651" i_stop="46826" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="46827" e_stop="47176" e_length="350"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.929">
            <gDNA_intron_boundary i_start="47177" i_stop="47447" i_length="271"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="47448" e_stop="47710" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45714" stop="45726"/>
              <exon start="45816" stop="46288"/>
              <exon start="46384" stop="46572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46560" stop="46650"/>
              <exon start="46827" stop="47176"/>
              <exon start="47448" stop="47710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCATAAGAAAAG : ATATCTCAGACAAGATCGTTGAGAGTTTATGCAGCAAACGGCGAAACAAGCTATTACCTGAAGGAGATTGTTCCCTGATCGAAGGCGATAATATGATTGATGAACTAGAACTACGAATTGCCAGTGTACTACAAAGTACTGGTCATCATTATGAAGGTGGGTTTTGGAGCAATTCGACAAAGCAAAACGTATCAGATGGTAAAAGACATGTAGCCATAGTCACAACTGCTAGCCTTCCGTGGATGACCGGAACAGCTGTCAATCCTCTCTTCCGAGCGGCTTATTTGGCCAAGTCTGAAAAGCAGAACGTTACACTCTTGGTTCCATGGCTATGTAAATCGGACCAAGAACTAGTTTATCCAAACAATCTTACATTTAGTTCACCAGAAGAGCAGGAACTCTACATACGGAATTGGCTTGAGGAAAGAGTCGGTTTCAAGACTGATTTCAAGATCTCGTTTTATCCTGGAAAG : TTCTCCAAGGAAAGGCGAAGTATACTACCAGCTGGAGATACTACTCAGTTTATCCCATCACGGGATGCTGATATTGCAATCTTAGAGGAGCCAGAACATCTAAACTGGTACCACCATGGCAAACGTTGGACTGATAAGTTTAACCATGTCGTTGGTATTGTTCACACAAATTATTTGGAGTATATCAAAAGAGAGAAGAATGGAGCTCTTCAAGCTTTCCTTGTGAAACACGTAAATAATTGGGTCACAAGAGCGCATTGTGACAAG : GTGCTTCGCCTTTCTGCTGCTACACAGGATTTACCCAGGTCTGTGGTCTGCAACGTTCATGGTGTAAATCCGAAGTTTTTGAAAATTGGAGAAAAAATGGCTGCAGAAAGACAAAACGGTCAGCAAGTTTTCTCTAAAGGTGCATACTTCTTGGGAAAAATGGTTTGGGCTAAGGGTTACAGGGAGTTAATAGACCTTTTAGCGAAGCACAAAAGTGACCTTGATGGTTTTAATATGGATTTGTTTGGCAACGGGGAAGACGCTCATGAAGTGCAGACAACGGCTAGGACGTTAAATTTGAATGTCAACTTCATGAAAGGCAGAGACCACGCGGATGATTCTCTTCATAG : TTATAAAGTCTTTATAAATCCTAGTATCAGCGATGTACTCTGTACAGCTACAGCTGAGGCACTCGCTATGGGGAAATTTGTAGTTTGTGCAGATCATCCGTCTAATGAGTTCTTCCAGGCATTTCCTAACTGCTTGACGTATAAGACATCAGAAGACTTTGTAACAAAGGTTAAAGAGGCAATGACCGGTGAACCTCAGCCTCTAACTCCCGAGGAACAATATAAGCTTTCGTGGGAAGCTGCAACACAGAGATTCATCGAAT</gDNA_template>
            <first_frame> G  I  R  K   : D  I  S  D  K  I  V  E  S  L  C  S  K  R  R  N  K  L  L  P  E  G  D  C  S  L  I  E  G  D  N  M  I  D  E  L  E  L  R  I  A  S  V  L  Q  S  T  G  H  H  Y  E  G  G  F  W  S  N  S  T  K  Q  N  V  S  D  G  K  R  H  V  A  I  V  T  T  A  S  L  P  W  M  T  G  T  A  V  N  P  L  F  R  A  A  Y  L  A  K  S  E  K  Q  N  V  T  L  L  V  P  W  L  C  K  S  D  Q  E  L  V  Y  P  N  N  L  T  F  S  S  P  E  E  Q  E  L  Y  I  R  N  W  L  E  E  R  V  G  F  K  T  D  F  K  I  S  F  Y  P  G  K  :  F  S  K  E  R  R  S  I  L  P  A  G  D  T  T  Q  F  I  P  S  R  D  A  D  I  A  I  L  E  E  P  E  H  L  N  W  Y  H  H  G  K  R  W  T  D  K  F  N  H  V  V  G  I  V  H  T  N  Y  L  E  Y  I  K  R  E  K  N  G  A  L  Q  A  F  L  V  K  H  V  N  N  W  V  T  R  A  H  C  D  K  :  V  L  R  L  S  A  A  T  Q  D  L  P  R  S  V  V  C  N  V  H  G  V  N  P  K  F  L  K  I  G  E  K  M  A  A  E  R  Q  N  G  Q  Q  V  F  S  K  G  A  Y  F  L  G  K  M  V  W  A  K  G  Y  R  E  L  I  D  L  L  A  K  H  K  S  D  L  D  G  F  N  M  D  L  F  G  N  G  E  D  A  H  E  V  Q  T  T  A  R  T  L  N  L  N  V  N  F  M  K  G  R  D  H  A  D  D  S  L  H  S :   Y  K  V  F  I  N  P  S  I  S  D  V  L  C  T  A  T  A  E  A  L  A  M  G  K  F  V  V  C  A  D  H  P  S  N  E  F  F  Q  A  F  P  N  C  L  T  Y  K  T  S  E  D  F  V  T  K  V  K  E  A  M  T  G  E  P  Q  P  L  T  P  E  E  Q  Y  K  L  S  W  E  A  A  T  Q  R  F  I  E  </first_frame>
            <second_frame>  A  *  E  K  :  I  S  Q  T  R  S  L  R  V  Y  A  A  N  G  E  T  S  Y  Y  L  K  E  I  V  P  *  S  K  A  I  I  *  L  M  N  *  N  Y  E  L  P  V  Y  Y  K  V  L  V  I  I  M  K  V  G  F  G  A  I  R  Q  S  K  T  Y  Q  M  V  K  D  M  *  P  *  S  Q  L  L  A  F  R  G  *  P  E  Q  L  S  I  L  S  S  E  R  L  I  W  P  S  L  K  S  R  T  L  H  S  W  F  H  G  Y  V  N  R  T  K  N  *  F  I  Q  T  I  L  H  L  V  H  Q  K  S  R  N  S  T  Y  G  I  G  L  R  K  E  S  V  S  R  L  I  S  R  S  R  F  I  L  E  S :   S  P  R  K  G  E  V  Y  Y  Q  L  E  I  L  L  S  L  S  H  H  G  M  L  I  L  Q  S  *  R  S  Q  N  I  *  T  G  T  T  M  A  N  V  G  L  I  S  L  T  M  S  L  V  L  F  T  Q  I  I  W  S  I  S  K  E  R  R  M  E  L  F  K  L  S  L  *  N  T  *  I  I  G  S  Q  E  R  I  V  T  R :   C  F  A  F  L  L  L  H  R  I  Y  P  G  L  W  S  A  T  F  M  V  *  I  R  S  F  *  K  L  E  K  K  W  L  Q  K  D  K  T  V  S  K  F  S  L  K  V  H  T  S  W  E  K  W  F  G  L  R  V  T  G  S  *  *  T  F  *  R  S  T  K  V  T  L  M  V  L  I  W  I  C  L  A  T  G  K  T  L  M  K  C  R  Q  R  L  G  R  *  I  *  M  S  T  S  *  K  A  E  T  T  R  M  I  L  F  I   : V  I  K  S  L  *  I  L  V  S  A  M  Y  S  V  Q  L  Q  L  R  H  S  L  W  G  N  L  *  F  V  Q  I  I  R  L  M  S  S  S  R  H  F  L  T  A  *  R  I  R  H  Q  K  T  L  *  Q  R  L  K  R  Q  *  P  V  N  L  S  L  *  L  P  R  N  N  I  S  F  R  G  K  L  Q  H  R  D  S  S  N </second_frame>
            <third_frame>   H  K  K  R :   Y  L  R  Q  D  R  *  E  F  M  Q  Q  T  A  K  Q  A  I  T  *  R  R  L  F  P  D  R  R  R  *  Y  D  *  *  T  R  T  T  N  C  Q  C  T  T  K  Y  W  S  S  L  *  R  W  V  L  E  Q  F  D  K  A  K  R  I  R  W  *  K  T  C  S  H  S  H  N  C  *  P  S  V  D  D  R  N  S  C  Q  S  S  L  P  S  G  L  F  G  Q  V  *  K  A  E  R  Y  T  L  G  S  M  A  M  *  I  G  P  R  T  S  L  S  K  Q  S  Y  I  *  F  T  R  R  A  G  T  L  H  T  E  L  A  *  G  K  S  R  F  Q  D  *  F  Q  D  L  V  L  S  W  K   : V  L  Q  G  K  A  K  Y  T  T  S  W  R  Y  Y  S  V  Y  P  I  T  G  C  *  Y  C  N  L  R  G  A  R  T  S  K  L  V  P  P  W  Q  T  L  D  *  *  V  *  P  C  R  W  Y  C  S  H  K  L  F  G  V  Y  Q  K  R  E  E  W  S  S  S  S  F  P  C  E  T  R  K  *  L  G  H  K  S  A  L  *  Q   : G  A  S  P  F  C  C  Y  T  G  F  T  Q  V  C  G  L  Q  R  S  W  C  K  S  E  V  F  E  N  W  R  K  N  G  C  R  K  T  K  R  S  A  S  F  L  *  R  C  I  L  L  G  K  N  G  L  G  *  G  L  Q  G  V  N  R  P  F  S  E  A  Q  K  *  P  *  W  F  *  Y  G  F  V  W  Q  R  G  R  R  S  *  S  A  D  N  G  *  D  V  K  F  E  C  Q  L  H  E  R  Q  R  P  R  G  *  F  S  S  *  :  L  *  S  L  Y  K  S  *  Y  Q  R  C  T  L  Y  S  Y  S  *  G  T  R  Y  G  E  I  C  S  L  C  R  S  S  V  *  *  V  L  P  G  I  S  *  L  L  D  V  *  D  I  R  R  L  C  N  K  G  *  R  G  N  D  R  *  T  S  A  S  N  S  R  G  T  I  *  A  F  V  G  S  C  N  T  E  I  H  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45714" stop="45726"/>
                    <exon start="45816" stop="46288"/>
                    <exon start="46384" stop="46650"/>
                    <exon start="46827" stop="47176"/>
                    <exon start="47448" stop="47709"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1365</number_coding_nucleotides>
                  <number_encoded_amino_acids>455</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIRKDISDKIVESLCSKRRNKLLPEGDCSLIEGDNMIDELELRIASVLQSTGHHYEGGFWSNSTKQNVSDGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSEKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQELYIRNWLEERVGFKTDFKISFYPGKFSKERRSILPAGDTTQFIPSRDADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFLVKHVNNWVTRAHCDKVLRLSAATQDLPRSVVCNVHGVNPKFLKIGEKMAAERQNGQQVFSKGAYFLGKMVWAKGYRELIDLLAKHKSDLDGFNMDLFGNGEDAHEVQTTARTLNLNVNFMKGRDHADDSLHSYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFQAFPNCLTYKTSEDFVTKVKEAMTGEPQPLTPEEQYKLSWEAATQRFIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="48304" PGL_stop="47928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48304" e_stop="47928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="48304" e_stop="47928" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48304" stop="47928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604843" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTGACACATTTTAGATAGACAAAGAACATATATCATAATTTTACAAATTTTACACATCCTATTTACTTTTCTTGCTGCATCACTAGTTACAAAAATCATCAAAATAAAACCTGAAACACTAGTGCAGAGGTGGAGCTAGGGAACACGAAGGGTTTCATCCGAATCTCTTTGCAAAAAAAAATACGCTATATATAAGATTAAAATGACTTTTTACGTGAAAATCCTGGTTACGACACTAATACCAGGTAACGATTGGAGTTATGAGTATGTATCCAAGTTACATCACACCTATACAGGTCAAATGAGATGTGTATATATATAACTACCAGCCATAAATTGGGTTTTCTACCTGGGGAGGTAAGAGATTGAGATCT</gDNA_template>
            <first_frame> N  L  T  H  F  R  *  T  K  N  I  Y  H  N  F  T  N  F  T  H  P  I  Y  F  S  C  C  I  T  S  Y  K  N  H  Q  N  K  T  *  N  T  S  A  E  V  E  L  G  N  T  K  G  F  I  R  I  S  L  Q  K  K  I  R  Y  I  *  D  *  N  D  F  L  R  E  N  P  G  Y  D  T  N  T  R  *  R  L  E  L  *  V  C  I  Q  V  T  S  H  L  Y  R  S  N  E  M  C  I  Y  I  T  T  S  H  K  L  G  F  L  P  G  E  V  R  D  *  D   </first_frame>
            <second_frame>  I  *  H  I  L  D  R  Q  R  T  Y  I  I  I  L  Q  I  L  H  I  L  F  T  F  L  A  A  S  L  V  T  K  I  I  K  I  K  P  E  T  L  V  Q  R  W  S  *  G  T  R  R  V  S  S  E  S  L  C  K  K  K  Y  A  I  Y  K  I  K  M  T  F  Y  V  K  I  L  V  T  T  L  I  P  G  N  D  W  S  Y  E  Y  V  S  K  L  H  H  T  Y  T  G  Q  M  R  C  V  Y  I  *  L  P  A  I  N  W  V  F  Y  L  G  R  *  E  I  E  I  </second_frame>
            <third_frame>   F  D  T  F  *  I  D  K  E  H  I  S  *  F  Y  K  F  Y  T  S  Y  L  L  F  L  L  H  H  *  L  Q  K  S  S  K  *  N  L  K  H  *  C  R  G  G  A  R  E  H  E  G  F  H  P  N  L  F  A  K  K  N  T  L  Y  I  R  L  K  *  L  F  T  *  K  S  W  L  R  H  *  Y  Q  V  T  I  G  V  M  S  M  Y  P  S  Y  I  T  P  I  Q  V  K  *  D  V  Y  I  Y  N  Y  Q  P  *  I  G  F  S  T  W  G  G  K  R  L  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="53561" PGL_stop="57458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53561" e_stop="53747"/>
            <exon e_start="56763" e_stop="57458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.869" e_score="0.941"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="53561" e_stop="53747" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.869">
            <gDNA_intron_boundary i_start="53748" i_stop="56762" i_length="3015"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="56763" e_stop="57458" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53561" stop="53747"/>
              <exon start="56763" stop="57458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53646" stop="53747"/>
              <exon start="56763" stop="57444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAACATATTTGAACATTCTATTGTTTGTATTTTGTTGCTTACAACTTAACAAACAGCACACTCTATACACTCTCTCTCTCTCTCTGGATCTTGCAGATCTGAGTATAGACCAAATTTTTTGTTCCTACAACCGAATTTCTCCTCTGAAGATTCAATCTGATTCAACATTTGCTGGATTTGATCTG : GTAAGGTGACTAGAAGAAAAAAATGGAGAAGTCATGCTCATTGTTGATACATTTTGATAAGGGTACGCCTGCTCTTGCCAATGAGATCAAAGAAGCACTTGAAGGAAATGATATCCCCGCCAAGGTTGAAGCTATGAAGAAAGCCGTAATGCTTTTATTGAATGGAGAAACCCTACCTCAGCTCTTCATCACTATTATTAGATATGTCTTGCCTTCTGAGGATCACACAATTCAAAAACTGTTACTTTTGTATTTGGAGATCATTGAGAAGACAGATTCTAAGGGGCGTGTGCTGCCCGAGATGATCCTAATCTGCCAGAACTTGAGGAATAATTTGCAGCATCCCAATGAGTACCTTCGTGGAGCTACGTTGAGATTTCTTTGCAGGCTGAATGAGGTTGATATAATTGAACCTCTAATTCCATCAATTATGAACAACTTGGAGCACCGACATCCATTTGTGAGGAGGAATGCAATTCTTGCTGTGATGTCTGTTTACAAGCTCCCACATGGTGAGCAGCTCCTGGTAGACGCACCAGAGAAGATTGAGAATCTCCTAACCACTGAGCAGGATCCATCGGCTAAGAGGAATGCATTTCTTATGCTCTTCCAATGTGCTCAGGAGCGTGCCATCAATTACCTCTTGACTCATGTTGATAGAGTCTCTGATTGGGGCGAGTTACTTCAGATGGTTGT</gDNA_template>
            <first_frame> D  N  I  F  E  H  S  I  V  C  I  L  L  L  T  T  *  Q  T  A  H  S  I  H  S  L  S  L  S  G  S  C  R  S  E  Y  R  P  N  F  L  F  L  Q  P  N  F  S  S  E  D  S  I  *  F  N  I  C  W  I  *  S   : G  K  V  T  R  R  K  K  W  R  S  H  A  H  C  *  Y  I  L  I  R  V  R  L  L  L  P  M  R  S  K  K  H  L  K  E  M  I  S  P  P  R  L  K  L  *  R  K  P  *  C  F  Y  *  M  E  K  P  Y  L  S  S  S  S  L  L  L  D  M  S  C  L  L  R  I  T  Q  F  K  N  C  Y  F  C  I  W  R  S  L  R  R  Q  I  L  R  G  V  C  C  P  R  *  S  *  S  A  R  T  *  G  I  I  C  S  I  P  M  S  T  F  V  E  L  R  *  D  F  F  A  G  *  M  R  L  I  *  L  N  L  *  F  H  Q  L  *  T  T  W  S  T  D  I  H  L  *  G  G  M  Q  F  L  L  *  C  L  F  T  S  S  H  M  V  S  S  S  W  *  T  H  Q  R  R  L  R  I  S  *  P  L  S  R  I  H  R  L  R  G  M  H  F  L  C  S  S  N  V  L  R  S  V  P  S  I  T  S  *  L  M  L  I  E  S  L  I  G  A  S  Y  F  R  W  L  </first_frame>
            <second_frame>  I  T  Y  L  N  I  L  L  F  V  F  C  C  L  Q  L  N  K  Q  H  T  L  Y  T  L  S  L  S  L  D  L  A  D  L  S  I  D  Q  I  F  C  S  Y  N  R  I  S  P  L  K  I  Q  S  D  S  T  F  A  G  F  D  L  :  V  R  *  L  E  E  K  N  G  E  V  M  L  I  V  D  T  F  *  *  G  Y  A  C  S  C  Q  *  D  Q  R  S  T  *  R  K  *  Y  P  R  Q  G  *  S  Y  E  E  S  R  N  A  F  I  E  W  R  N  P  T  S  A  L  H  H  Y  Y  *  I  C  L  A  F  *  G  S  H  N  S  K  T  V  T  F  V  F  G  D  H  *  E  D  R  F  *  G  A  C  A  A  R  D  D  P  N  L  P  E  L  E  E  *  F  A  A  S  Q  *  V  P  S  W  S  Y  V  E  I  S  L  Q  A  E  *  G  *  Y  N  *  T  S  N  S  I  N  Y  E  Q  L  G  A  P  T  S  I  C  E  E  E  C  N  S  C  C  D  V  C  L  Q  A  P  T  W  *  A  A  P  G  R  R  T  R  E  D  *  E  S  P  N  H  *  A  G  S  I  G  *  E  E  C  I  S  Y  A  L  P  M  C  S  G  A  C  H  Q  L  P  L  D  S  C  *  *  S  L  *  L  G  R  V  T  S  D  G  C </second_frame>
            <third_frame>   *  H  I  *  T  F  Y  C  L  Y  F  V  A  Y  N  L  T  N  S  T  L  Y  T  L  S  L  S  L  W  I  L  Q  I  *  V  *  T  K  F  F  V  P  T  T  E  F  L  L  *  R  F  N  L  I  Q  H  L  L  D  L  I  W :   *  G  D  *  K  K  K  M  E  K  S  C  S  L  L  I  H  F  D  K  G  T  P  A  L  A  N  E  I  K  E  A  L  E  G  N  D  I  P  A  K  V  E  A  M  K  K  A  V  M  L  L  L  N  G  E  T  L  P  Q  L  F  I  T  I  I  R  Y  V  L  P  S  E  D  H  T  I  Q  K  L  L  L  L  Y  L  E  I  I  E  K  T  D  S  K  G  R  V  L  P  E  M  I  L  I  C  Q  N  L  R  N  N  L  Q  H  P  N  E  Y  L  R  G  A  T  L  R  F  L  C  R  L  N  E  V  D  I  I  E  P  L  I  P  S  I  M  N  N  L  E  H  R  H  P  F  V  R  R  N  A  I  L  A  V  M  S  V  Y  K  L  P  H  G  E  Q  L  L  V  D  A  P  E  K  I  E  N  L  L  T  T  E  Q  D  P  S  A  K  R  N  A  F  L  M  L  F  Q  C  A  Q  E  R  A  I  N  Y  L  L  T  H  V  D  R  V  S  D  W  G  E  L  L  Q  M  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56776" stop="57456"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKMEKSCSLLIHFDKGTPALANEIKEALEGNDIPAKVEAMKKAVMLLLNGETLPQLFITIIRYVLPSEDHTIQKLLLLYLEIIEKTDSKGRVLPEMILICQNLRNNLQHPNEYLRGATLRFLCRLNEVDIIEPLIPSIMNNLEHRHPFVRRNAILAVMSVYKLPHGEQLLVDAPEKIENLLTTEQDPSAKRNAFLMLFQCAQERAINYLLTHVDRVSDWGELLQMV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53562" stop="53747"/>
                    <exon start="56763" stop="56771"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITYLNILLFVFCCLQLNKQHTLYTLSLSLDLADLSIDQIFCSYNRISPLKIQSDSTFAGFDLVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="58238" PGL_stop="63454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58238" e_stop="58833"/>
            <exon e_start="60658" e_stop="61167"/>
            <exon e_start="61661" e_stop="61746"/>
            <exon e_start="62446" e_stop="62689"/>
            <exon e_start="63097" e_stop="63454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58238" e_stop="58833" e_length="596"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.992">
            <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60658" e_stop="61167" e_length="510"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="61168" i_stop="61660" i_length="493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61661" e_stop="61746" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.868">
            <gDNA_intron_boundary i_start="61747" i_stop="62445" i_length="699"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62446" e_stop="62689" e_length="244"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.994">
            <gDNA_intron_boundary i_start="62690" i_stop="63096" i_length="407"/>
          </intron>
          <exon e_serial="5" e_score="0.953">
            <gDNA_exon_boundary e_start="63097" e_stop="63454" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58238" stop="58833"/>
              <exon start="60658" stop="61167"/>
              <exon start="61661" stop="61746"/>
              <exon start="62446" stop="62689"/>
              <exon start="63097" stop="63366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61714" stop="61746"/>
              <exon start="62446" stop="62689"/>
              <exon start="63097" stop="63454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTTCTGAGGAAAGTGAAGCTGCTGATTCTTCAAAAAAGACTCAGCAAGCAAACTCCATTACTACTTTGTCATCTAGAAGACCAGCTGTACTTGCTGATGGGACATATGCTACTCAAAGTGCTGCATCTGAAACTGCTTTCTCTCCCCCGACAGTTGTTCAAGGATCTTTAACCACTGGAAACTTGAGATCCCTCCTTCTCACTGGTGATTTCTTCTTGGGAGCAGTTGTTGCTTGTACACTGACTAAGCTCATTCTGAGGCTGGAAGAAGTTCAGCCATCAAAACTTGAATTGAACAAAGCTACAACAAATGCATTACTGATCATGGTCTCAATGATACAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAG : GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAG : GTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACC : ATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAG : GTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAAAGAGAGTAGTGCTGCTTTATCTCTGTGTTGTAAGTTAACTGAATTTGGTACAAGTCACTCTTTGCTTGTTACTTTCTGTTAACTTCCAATTCCTGATTTCCATTTTTTTTTTTGTAAACAAAGGTCAACTCAGTTTCCATTGCCATATTATATATTGAAATTTTAGGCTTATTTCC</gDNA_template>
            <first_frame> Q  F  L  R  K  V  K  L  L  I  L  Q  K  R  L  S  K  Q  T  P  L  L  L  C  H  L  E  D  Q  L  Y  L  L  M  G  H  M  L  L  K  V  L  H  L  K  L  L  S  L  P  R  Q  L  F  K  D  L  *  P  L  E  T  *  D  P  S  F  S  L  V  I  S  S  W  E  Q  L  L  L  V  H  *  L  S  S  F  *  G  W  K  K  F  S  H  Q  N  L  N  *  T  K  L  Q  Q  M  H  Y  *  S  W  S  Q  *  Y  S  *  G  S  L  M  L  F  L  T  Q  L  T  M  I  L  M  T  E  *  F  F  A  *  D  C  S  V  I  R  A  M  R  L  G  R  S  G  *  A  L  V  A  R  V  L  L  I  C  F  L  I  N  N  Y  E  R  Q  R  R  S  K  Q  R  H  K  F  L  A  P  S  Q  M  T  S  L  I  S  T  I  *  R  V  G  R :   E  *  A  N  W  S  W  K  M  K  S  R  M  I  *  N  V  P  L  E  N  S  S  R  M  R  M  M  L  I  S  *  A  G  Y  C  S  L  Q  D  L  V  I  L  F  M  L  K  H  M  *  Q  F  I  I  M  T  L  S  *  M  L  P  *  *  I  E  P  K  R  H  F  R  I  C  V  W  N  W  Q  P  W  V  I  L  S  S  L  S  V  H  R  I  I  L  *  L  L  S  Q  A  S  R  *  K  L  I  S  R  C  L  P  P  R  L  E  *  F  L  V  T  L  S  M  S  L  Q  M  C  S  S  E  L  L  L  C  S  M  I  S  I  L  T  S  W  I  T  S  L  L  L  F  A  V  R  L  L  L  E  L  C  G  L  N  L  S  G  K  T  R :   L  L  S  T  L  S  F  K  M  K  K  D  F  L  T  I  L  S  N  Q  P  T  *  S  V  *  L  H   : H  L  L  W  K  M  N  V  D  S  L  L  L  I  F  M  Q  R  V  C  L  E  R  M  L  W  *  I  *  A  L  K  S  N  Q  M  V  S  *  V  V  I  L  E  *  E  A  K  H  K  E  L  L  L  A  W  E  T  K  *  H  S  S  R  R  E  A  I  D  L  I  V  L  L  W  S  S  P  R  Q  Q  R :   S  L  K  H  E  T  E  T  P  S  H  L  P  F  V  A  W  R  S  A  G  V  I  E  L  K  T  C  R  N  C  I  T  A  L  T  F  R  F  G  S  A  K  F  E  H  F  T  L  L  *  G  H  F  L  V  E  K  I  G  K  R  V  V  L  L  Y  L  C  V  V  S  *  L  N  L  V  Q  V  T  L  C  L  L  L  S  V  N  F  Q  F  L  I  S  I  F  F  F  V  N  K  G  Q  L  S  F  H  C  H  I  I  Y  *  N  F  R  L  I  S </first_frame>
            <second_frame>  S  F  *  G  K  *  S  C  *  F  F  K  K  D  S  A  S  K  L  H  Y  Y  F  V  I  *  K  T  S  C  T  C  *  W  D  I  C  Y  S  K  C  C  I  *  N  C  F  L  S  P  D  S  C  S  R  I  F  N  H  W  K  L  E  I  P  P  S  H  W  *  F  L  L  G  S  S  C  C  L  Y  T  D  *  A  H  S  E  A  G  R  S  S  A  I  K  T  *  I  E  Q  S  Y  N  K  C  I  T  D  H  G  L  N  D  T  A  R  A  V  S  C  S  S  S  P  N  *  Q  *  F  S  *  Q  N  S  S  L  H  K  I  A  L  *  Y  G  Q  *  G  *  E  D  L  V  E  L  L  S  R  E  F  C  *  Y  A  F  *  *  T  T  T  R  D  R  G  D  Q  S  K  G  T  N  F  S  L  P  A  R  *  P  H  *  F  L  P  F  E  E  *  E   : G  N  E  P  T  G  V  G  R  *  S  P  G  *  F  E  T  C  H  W  R  I  R  Q  G  *  E  *  C  *  *  A  K  Q  G  T  A  A  Y  R  I  *  *  S  C  L  C  *  S  I  C  N  S  S  S  L  *  H  C  P  R  C  Y  R  D  K  S  N  Q  R  D  T  S  E  F  V  F  G  T  G  N  H  G  *  S  *  A  R  *  A  S  T  E  L  Y  Y  S  S  *  V  K  Q  A  D  K  S  *  Y  Q  G  V  F  H  R  D  W  S  D  F  W  *  H  C  L  *  V  F  K  C  A  R  A  N  C  C  C  A  Q  *  Y  P  Y  *  H  H  G  L  H  L  S  C  C  L  Q  *  G  C  F  *  N  Y  V  G  *  I  *  V  G  K  Q   : G  C  C  Q  H  C  H  S  R  *  K  R  I  S  *  P  Y  Y  Q  I  N  Q  H  E  V  S  D  C  T  :  I  C  S  G  R  *  M  W  I  P  C  C  *  S  L  C  K  E  C  V  W  R  G  C  F  G  E  F  E  H  *  K  A  I  R  W  *  A  E  W  L  Y  *  N  K  K  Q  N  T  R  N  C  S  *  L  G  R  Q  N  N  T  Q  A  E  G  R  Q  L  I  L  L  C  C  Y  G  P  L  L  D  S  K   : G  H  *  N  M  K  L  R  L  L  H  I  S  H  L  *  L  G  G  V  L  G  L  L  S  *  K  P  V  E  I  V  L  L  H  L  L  L  D  S  D  P  R  N  S  S  I  L  L  F  F  E  D  I  F  W  *  R  K  L  E  R  E  *  C  C  F  I  S  V  L  *  V  N  *  I  W  Y  K  S  L  F  A  C  Y  F  L  L  T  S  N  S  *  F  P  F  F  F  L  *  T  K  V  N  S  V  S  I  A  I  L  Y  I  E  I  L  G  L  F   </second_frame>
            <third_frame>   V  S  E  E  S  E  A  A  D  S  S  K  K  T  Q  Q  A  N  S  I  T  T  L  S  S  R  R  P  A  V  L  A  D  G  T  Y  A  T  Q  S  A  A  S  E  T  A  F  S  P  P  T  V  V  Q  G  S  L  T  T  G  N  L  R  S  L  L  L  T  G  D  F  F  L  G  A  V  V  A  C  T  L  T  K  L  I  L  R  L  E  E  V  Q  P  S  K  L  E  L  N  K  A  T  T  N  A  L  L  I  M  V  S  M  I  Q  L  G  Q  S  H  A  L  P  H  P  I  D  N  D  S  H  D  R  I  V  L  C  I  R  L  L  C  N  T  G  N  E  V  R  K  I  W  L  S  S  C  R  E  S  F  V  N  M  L  S  D  K  Q  L  R  E  T  E  E  I  K  A  K  A  Q  I  S  R  S  Q  P  D  D  L  I  D  F  Y  H  L  K  S  R  K  :  G  M  S  Q  L  E  L  E  D  E  V  Q  D  D  L  K  R  A  T  G  E  F  V  K  D  E  N  D  A  N  K  L  S  R  V  L  Q  L  T  G  F  S  D  P  V  Y  A  E  A  Y  V  T  V  H  H  Y  D  I  V  L  D  V  T  V  I  N  R  T  K  E  T  L  Q  N  L  C  L  E  L  A  T  M  G  D  L  K  L  V  E  R  P  Q  N  Y  T  I  A  P  E  S  S  K  Q  I  K  A  N  I  K  V  S  S  T  E  T  G  V  I  F  G  N  I  V  Y  E  S  S  N  V  L  E  R  T  V  V  V  L  N  D  I  H  I  D  I  M  D  Y  I  S  P  A  V  C  S  E  A  A  F  R  T  M  W  A  E  F  E  W  E  N  K  :  V  A  V  N  T  V  I  Q  D  E  K  G  F  L  D  H  I  I  K  S  T  N  M  K  C  L  T  A  P :   S  A  L  E  D  E  C  G  F  L  A  A  N  L  Y  A  K  S  V  F  G  E  D  A  L  V  N  L  S  I  E  K  Q  S  D  G  K  L  S  G  Y  I  R  I  R  S  K  T  Q  G  I  A  L  S  L  G  D  K  I  T  L  K  Q  K  G  G  N  *  S  Y  C  V  V  M  V  L  S  *  T  A  K  :  V  I  K  T  *  N  *  D  S  F  T  S  P  I  C  S  L  E  E  C  W  G  Y  *  V  K  N  L  *  K  L  Y  Y  C  T  Y  F  *  I  R  I  R  E  I  R  A  F  Y  S  S  L  R  T  F  F  G  R  E  N  W  K  E  S  S  A  A  L  S  L  C  C  K  L  T  E  F  G  T  S  H  S  L  L  V  T  F  C  *  L  P  I  P  D  F  H  F  F  F  C  K  Q  R  S  T  Q  F  P  L  P  Y  Y  I  L  K  F  *  A  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58240" stop="58833"/>
                    <exon start="60658" stop="61167"/>
                    <exon start="61661" stop="61746"/>
                    <exon start="62446" stop="62650"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSEESEAADSSKKTQQANSITTLSSRRPAVLADGTYATQSAASETAFSPPTVVQGSLTTGNLRSLLLTGDFFLGAVVACTLTKLILRLEEVQPSKLELNKATTNALLIMVSMIQLGQSHALPHPIDNDSHDRIVLCIRLLCNTGNEVRKIWLSSCRESFVNMLSDKQLRETEEIKAKAQISRSQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKDENDANKLSRVLQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTIAPESSKQIKANIKVSSTETGVIFGNIVYESSNVLERTVVVLNDIHIDIMDYISPAVCSEAAFRTMWAEFEWENKVAVNTVIQDEKGFLDHIIKSTNMKCLTAPSALEDECGFLAANLYAKSVFGEDALVNLSIEKQSDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62625" stop="62689"/>
                    <exon start="63097" stop="63250"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSSRREAIDLIVLLWSSPRQQRSLKHETETPSHLPFVAWRSAGVIELKTCRNCITALTFRFGSAKFEHFTLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="83809" PGL_stop="71936"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83809" e_stop="83689"/>
            <exon e_start="82943" e_stop="82812"/>
            <exon e_start="79466" e_stop="79347"/>
            <exon e_start="79030" e_stop="78944"/>
            <exon e_start="78666" e_stop="78547"/>
            <exon e_start="78412" e_stop="78295"/>
            <exon e_start="78189" e_stop="78064"/>
            <exon e_start="75188" e_stop="75054"/>
            <exon e_start="74115" e_stop="73967"/>
            <exon e_start="73861" e_stop="73721"/>
            <exon e_start="73395" e_stop="73084"/>
            <exon e_start="72698" e_stop="72580"/>
            <exon e_start="72347" e_stop="72088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.866" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.532" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.086" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.992" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.711" e_score="0.975"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="83809" e_stop="83689" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83688" i_stop="82944" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82943" e_stop="82812" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.866" acc_prob="0.988">
            <gDNA_intron_boundary i_start="82811" i_stop="79467" i_length="3345"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79466" e_stop="79347" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="79346" i_stop="79031" i_length="316"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79030" e_stop="78944" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.907" acc_prob="0.934">
            <gDNA_intron_boundary i_start="78943" i_stop="78667" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78666" e_stop="78547" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.967" acc_prob="0.960">
            <gDNA_intron_boundary i_start="78546" i_stop="78413" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78412" e_stop="78295" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.948" acc_prob="0.823">
            <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78189" e_stop="78064" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.990">
            <gDNA_intron_boundary i_start="78063" i_stop="75189" i_length="2875"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="75188" e_stop="75054" e_length="135"/>
          </exon>
          <intron i_serial="8" don_prob="0.532" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75053" i_stop="74116" i_length="938"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74115" e_stop="73967" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.086" acc_prob="0.718">
            <gDNA_intron_boundary i_start="73966" i_stop="73862" i_length="105"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="73861" e_stop="73721" e_length="141"/>
          </exon>
          <intron i_serial="10" don_prob="0.937" acc_prob="0.997">
            <gDNA_intron_boundary i_start="73720" i_stop="73396" i_length="325"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="73395" e_stop="73084" e_length="312"/>
          </exon>
          <intron i_serial="11" don_prob="0.799" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385"/>
          </intron>
          <exon e_serial="12" e_score="0.975">
            <gDNA_exon_boundary e_start="72698" e_stop="72580" e_length="119"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.711">
            <gDNA_intron_boundary i_start="72579" i_stop="72348" i_length="232"/>
          </intron>
          <exon e_serial="13" e_score="0.988">
            <gDNA_exon_boundary e_start="72347" e_stop="72088" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83809" stop="83689"/>
              <exon start="82943" stop="82812"/>
              <exon start="79466" stop="79347"/>
              <exon start="79030" stop="78944"/>
              <exon start="78666" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="73967"/>
              <exon start="73861" stop="73721"/>
              <exon start="73395" stop="73084"/>
              <exon start="72698" stop="72580"/>
              <exon start="72347" stop="72088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78575" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="74026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGGCACCTGCTTACAAGAAAAAGAACCTTAGTATATCGGACCAAAGTATATCAGCAGTGACTTTAAAAAAGATATGGGATGAGTTTCCTTTAAGTTCGAATCATTGCTTGTCAGAGAAG : GACGGTGACCGATATTTCATGCTGAATATTGTAATTACAGAAATATTTTTGCATCTAAGTTATGGGTCCAAATTATCACCTGGGTTGCTGGAAAGATTTCTGGAGTTCATTGAGAGTTCTCTATCTGAAAAG : ATTCACGATGGCAGAGAGGCTGGTAAAGTACATCATGAGAAGCATTTAATTTCACTGGTTGCTTTTATCCCAAAACTCATTATGCAAGTGTCTGTTGCTTGGAAGTCACGTATCCTTCAG : GCTTTTACGAAAGTTTTTGAGAATTGCAGTGCAGAGTCCTCAATGAAATTGGCTTGCCTTTCTGTTGTTGAAGAAATGCTACTTCCT : GAGCAGAATTGCCTTTATCTGGATCCCAAAGATCTTGAAATATTAAATCATAGTACATGGATAGGGGAGCTTCCAAAGCTGTTAGTCCTCTTAGGTGATAAACACCCATTACATTCAAAG : GCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATG : AAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATAT : GTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTG : AGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATA : TCTCAGAAACAACCAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCCGGAGTACTTCTTAGATGTTGTGAAT : AACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATTCGACAGACAAGGGTTTATTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG : TCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAG : ACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTG</gDNA_template>
            <first_frame> S  G  T  C  L  Q  E  K  E  P  *  Y  I  G  P  K  Y  I  S  S  D  F  K  K  D  M  G  *  V  S  F  K  F  E  S  L  L  V  R  E   : G  R  *  P  I  F  H  A  E  Y  C  N  Y  R  N  I  F  A  S  K  L  W  V  Q  I  I  T  W  V  A  G  K  I  S  G  V  H  *  E  F  S  I  *  K   : D  S  R  W  Q  R  G  W  *  S  T  S  *  E  A  F  N  F  T  G  C  F  Y  P  K  T  H  Y  A  S  V  C  C  L  E  V  T  Y  P  S   : G  F  Y  E  S  F  *  E  L  Q  C  R  V  L  N  E  I  G  L  P  F  C  C  *  R  N  A  T  S   : *  A  E  L  P  L  S  G  S  Q  R  S  *  N  I  K  S  *  Y  M  D  R  G  A  S  K  A  V  S  P  L  R  *  *  T  P  I  T  F  K   : G  C  V  T  S  S  A  S  C  W  T  N  C  *  F  K  H  D  T  G  K  R  I  *  K  Y  A  V  L  Y  K  S  F  L  L  H  L  L  Q  * :   N  C  K  L  W  S  I  H  E  A  S  *  R  Y  S  G  A  L  C  M  L  S  V  L  L  P  F  L  G  Q  G  D  T  R  V  F  S  L  M  L  H  M :   S  R  V  G  T  I  Y  P  F  P  S  H  G  S  S  T  L  S  L  Q  G  W  P  Y  P  D  C  R  L  H  *  L  L  H  H  I  A  F  T  L  S  S  L  S  * :   E  N  *  S  Y  G  E  A  R  R  E  V  K  S  W  N  L  Q  S  S  C  *  G  C  L  F  L  V  V  A  D  R  R  *  C  A  R  F  A  D  A  G  E  N  C  S  *  *  D   : I  S  E  T  T  S  R  Q  H  L  W  F  Y  K  I  A  Y  H  T  R  L  K  T  Y  S  T  F  *  R  N  Y  Q  *  T  K  R  G  P  S  G  V  L  L  R  C  C  E   : *  H  S  R  G  R  *  R  V  Y  *  I  F  D  S  T  D  K  G  L  L  P  P  S  L  F  F  P  I  *  *  E  Q  H  A  V  K  S  D  I  G  S  D  G  I  I  Y  Q  G  K  C  A  S  F  E  R  C  L  G  K  G  S  F  K  Q  N  S  F  C  S  L  C  S  L  T  C  A  W  R  Y  *  N  A  E  T  S  S  I  M  Q  D  T  D  *  K  Y  T  R  K  H  A  Q  T  R   : V  F  *  G  Y  Y  N  D  N  *  R  K  T  *  N  P  K  C  L  *  H  T  D  C  S  R  *  H  I  G  I  R  L  T  W  N  S  V  S  E  :  T  Q  C  S  S  W  *  R  K  R  I  E  N  A  I  V  I  *  L  S  L  M  T  P  V  E  R  V  S  R  T  S  V  E  P  H  R  S  Q  *  Q  K  R  R  V  S  A  Q  P  P  R  S  V  R  W  L  H  S  I  M  T  I  E  L  K  L  *  W  P  M  V  K  T  F  S  Y  N  H  *  N  D  I  I  I  I  V   </first_frame>
            <second_frame>  L  A  P  A  Y  K  K  K  N  L  S  I  S  D  Q  S  I  S  A  V  T  L  K  K  I  W  D  E  F  P  L  S  S  N  H  C  L  S  E  K  :  D  G  D  R  Y  F  M  L  N  I  V  I  T  E  I  F  L  H  L  S  Y  G  S  K  L  S  P  G  L  L  E  R  F  L  E  F  I  E  S  S  L  S  E  K  :  I  H  D  G  R  E  A  G  K  V  H  H  E  K  H  L  I  S  L  V  A  F  I  P  K  L  I  M  Q  V  S  V  A  W  K  S  R  I  L  Q  :  A  F  T  K  V  F  E  N  C  S  A  E  S  S  M  K  L  A  C  L  S  V  V  E  E  M  L  L  P  :  E  Q  N  C  L  Y  L  D  P  K  D  L  E  I  L  N  H  S  T  W  I  G  E  L  P  K  L  L  V  L  L  G  D  K  H  P  L  H  S  K  :  A  V  L  R  L  Q  L  R  V  G  Q  T  A  N  L  S  M  T  P  A  K  E  Y  E  N  M  Q  Y  F  I  R  A  F  Y  C  T  Y  S  N   : E  T  V  S  Y  G  P  F  M  R  L  P  R  D  I  Q  E  L  S  V  C  C  L  Y  Y  F  P  F  L  D  K  V  I  L  E  S  L  A  S  C  C  I   : C  H  E  L  E  P  F  I  L  F  R  V  M  E  V  L  H  S  A  Y  K  A  G  H  I  Q  I  A  D  Y  I  S  F  F  I  T  L  L  S  R  F  Q  V  Y  P   : E  K  I  D  P  M  E  K  H  E  G  K  S  N  R  G  T  F  K  A  V  V  R  A  V  C  S  W  L  S  Q  I  G  D  D  V  L  V  L  Q  M  L  E  K  I  V  L  D  E  I  :  S  Q  K  Q  P  V  D  N  I  Y  G  F  I  R  L  L  I  T  L  D  S  K  P  T  R  L  S  E  E  T  I  N  R  L  S  E  V  L  P  E  Y  F  L  D  V  V  N  :  N  I  P  E  E  D  D  E  S  T  K  S  L  I  R  Q  T  R  V  Y  Y  L  L  P  C  F  F  L  F  D  R  S  N  M  L  L  N  Q  I  L  E  V  M  G  S  F  I  R  G  N  V  P  H  S  K  G  A  L  A  K  D  H  S  S  R  I  L  S  V  V  S  V  L  L  L  V  L  G  D  I  K  M  Q  K  L  L  L  S  C  K  T  Q  I  R  N  I  L  E  S  M  H  R  L  E  :  S  S  E  D  I  T  M  T  I  E  E  R  H  K  I  R  S  A  Y  D  I  L  T  A  A  V  S  T  L  E  Y  D  *  P  G  I  V  Y  L  R :   L  N  V  V  R  G  K  E  R  G  S  R  M  Q  S  S  S  N  Y  L  *  *  H  Q  L  S  G  *  V  G  L  L  L  S  L  I  D  H  S  N  K  N  V  E  F  L  L  N  L  L  D  Q  C  D  G  Y  I  Q  L  *  P  L  N  *  N  C  N  G  L  W  L  K  H  S  V  T  T  I  E  M  T  L  *  L  L  S  </second_frame>
            <third_frame>   W  H  L  L  T  R  K  R  T  L  V  Y  R  T  K  V  Y  Q  Q  *  L  *  K  R  Y  G  M  S  F  L  *  V  R  I  I  A  C  Q  R  R :   T  V  T  D  I  S  C  *  I  L  *  L  Q  K  Y  F  C  I  *  V  M  G  P  N  Y  H  L  G  C  W  K  D  F  W  S  S  L  R  V  L  Y  L  K  R :   F  T  M  A  E  R  L  V  K  Y  I  M  R  S  I  *  F  H  W  L  L  L  S  Q  N  S  L  C  K  C  L  L  L  G  S  H  V  S  F  R :   L  L  R  K  F  L  R  I  A  V  Q  S  P  Q  *  N  W  L  A  F  L  L  L  K  K  C  Y  F  L :   S  R  I  A  F  I  W  I  P  K  I  L  K  Y  *  I  I  V  H  G  *  G  S  F  Q  S  C  *  S  S  *  V  I  N  T  H  Y  I  Q  R :   L  C  Y  V  F  S  F  V  L  D  K  L  L  I  *  A  *  H  R  Q  K  N  M  K  I  C  S  T  L  *  E  L  F  T  A  P  T  P  M  :  K  L  *  A  M  V  H  S  *  G  F  L  E  I  F  R  S  S  L  Y  A  V  C  I  T  S  L  S  W  T  R  *  Y  S  S  L  *  P  H  A  A  Y  :  V  T  S  W  N  H  L  S  F  S  E  S  W  K  F  Y  T  Q  P  T  R  L  A  I  S  R  L  Q  I  T  L  A  S  S  S  H  C  F  H  A  F  K  F  I  L  :  R  K  L  I  L  W  R  S  T  K  G  S  Q  I  V  E  P  S  K  Q  L  L  G  L  F  V  L  G  C  R  R  *  E  M  M  C  S  F  C  R  C  W  R  K  L  F  L  M  R  Y :   L  R  N  N  Q  *  T  T  F  M  V  L  *  D  C  L  S  H  *  T  Q  N  L  L  D  F  L  K  K  L  S  I  D  *  A  R  S  F  R  S  T  S  *  M  L  *  I :   T  F  Q  R  K  M  T  S  L  L  N  L  *  F  D  R  Q  G  F  I  T  S  F  L  V  F  S  Y  L  I  G  A  T  C  C  *  I  R  Y  W  K  *  W  D  H  L  S  G  E  M  C  L  I  R  K  V  P  W  Q  R  I  I  Q  A  E  F  F  L  *  S  L  F  S  Y  L  C  L  E  I  L  K  C  R  N  F  F  Y  H  A  R  H  R  L  E  I  Y  *  K  A  C  T  D  S  S :   L  L  R  I  L  Q  *  Q  L  K  K  D  I  K  S  E  V  L  M  T  Y  *  L  Q  P  L  A  H  W  N  T  T  N  L  E  *  C  I  *   : D  S  M  *  F  V  V  K  K  E  D  R  E  C  N  R  H  L  I  I  F  D  D  T  S  *  A  G  K  *  D  F  C  *  A  S  S  I  T  V  T  K  T  *  S  F  C  S  T  S  S  I  S  A  M  V  T  F  N  Y  D  H  *  I  E  I  V  M  A  Y  G  *  N  I  Q  L  Q  P  L  K  *  H  Y  N  Y  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83808" stop="83689"/>
                    <exon start="82943" stop="82812"/>
                    <exon start="79466" stop="79347"/>
                    <exon start="79030" stop="78944"/>
                    <exon start="78666" stop="78547"/>
                    <exon start="78412" stop="78295"/>
                    <exon start="78189" stop="78064"/>
                    <exon start="75188" stop="75054"/>
                    <exon start="74115" stop="73967"/>
                    <exon start="73861" stop="73721"/>
                    <exon start="73395" stop="73084"/>
                    <exon start="72698" stop="72600"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1656</number_coding_nucleotides>
                  <number_encoded_amino_acids>552</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAPAYKKKNLSISDQSISAVTLKKIWDEFPLSSNHCLSEKDGDRYFMLNIVITEIFLHLSYGSKLSPGLLERFLEFIESSLSEKIHDGREAGKVHHEKHLISLVAFIPKLIMQVSVAWKSRILQAFTKVFENCSAESSMKLACLSVVEEMLLPEQNCLYLDPKDLEILNHSTWIGELPKLLVLLGDKHPLHSKAVLRLQLRVGQTANLSMTPAKEYENMQYFIRAFYCTYSNETVSYGPFMRLPRDIQELSVCCLYYFPFLDKVILESLASCCICHELEPFILFRVMEVLHSAYKAGHIQIADYISFFITLLSRFQVYPEKIDPMEKHEGKSNRGTFKAVVRAVCSWLSQIGDDVLVLQMLEKIVLDEISQKQPVDNIYGFIRLLITLDSKPTRLSEETINRLSEVLPEYFLDVVNNIPEEDDESTKSLIRQTRVYYLLPCFFLFDRSNMLLNQILEVMGSFIRGNVPHSKGALAKDHSSRILSVVSVLLLVLGDIKMQKLLLSCKTQIRNILESMHRLESSEDITMTIEERHKIRSAYDILTAAVSTLEYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73336" e_stop="73084"/>
            <exon e_start="72698" e_stop="72580"/>
            <exon e_start="72411" e_stop="71936"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.799" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.466" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73336" e_stop="73084" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.799" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72698" e_stop="72580" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.466">
            <gDNA_intron_boundary i_start="72579" i_stop="72412" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="72411" e_stop="71936" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73336" stop="73084"/>
              <exon start="72698" stop="72580"/>
              <exon start="72411" stop="71936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG : TCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAG : TGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGACATGGGAAACCTTATATTTGACTCTGGTTGTAAGTTGGACTCTTATACTTACAACTTTGTCAATGAAACACAATATACTAAACTAGTTCCTCATCCT</gDNA_template>
            <first_frame> L  P  P  S  L  F  F  P  I  *  *  E  Q  H  A  V  K  S  D  I  G  S  D  G  I  I  Y  Q  G  K  C  A  S  F  E  R  C  L  G  K  G  S  F  K  Q  N  S  F  C  S  L  C  S  L  T  C  A  W  R  Y  *  N  A  E  T  S  S  I  M  Q  D  T  D  *  K  Y  T  R  K  H  A  Q  T  R   : V  F  *  G  Y  Y  N  D  N  *  R  K  T  *  N  P  K  C  L  *  H  T  D  C  S  R  *  H  I  G  I  R  L  T  W  N  S  V  S  E  :  *  Y  N  L  L  Y  K  M  N  V  S  I  P  M  I  I  H  *  H  S  A  D  S  M  *  F  V  V  K  K  E  D  R  E  C  N  R  H  L  I  I  F  D  D  T  S  *  A  G  K  *  D  F  C  *  A  S  S  I  T  V  T  K  T  *  S  F  C  S  T  S  S  I  S  A  M  V  T  F  N  Y  D  H  *  I  E  I  V  M  A  Y  G  *  N  I  Q  L  Q  P  L  K  *  H  Y  N  Y  C  L  R  Y  I  Y  S  Y  C  I  F  N  V  S  L  Y  E  F  R  M  T  W  E  T  L  Y  L  T  L  V  V  S  W  T  L  I  L  T  T  L  S  M  K  H  N  I  L  N  *  F  L  I   </first_frame>
            <second_frame>  Y  L  L  P  C  F  F  L  F  D  R  S  N  M  L  L  N  Q  I  L  E  V  M  G  S  F  I  R  G  N  V  P  H  S  K  G  A  L  A  K  D  H  S  S  R  I  L  S  V  V  S  V  L  L  L  V  L  G  D  I  K  M  Q  K  L  L  L  S  C  K  T  Q  I  R  N  I  L  E  S  M  H  R  L  E  :  S  S  E  D  I  T  M  T  I  E  E  R  H  K  I  R  S  A  Y  D  I  L  T  A  A  V  S  T  L  E  Y  D  *  P  G  I  V  Y  L  S :   D  T  I  C  C  T  R  *  M  F  Q  S  Q  *  S  F  I  D  I  L  Q  T  Q  C  S  S  W  *  R  K  R  I  E  N  A  I  V  I  *  L  S  L  M  T  P  V  E  R  V  S  R  T  S  V  E  P  H  R  S  Q  *  Q  K  R  R  V  S  A  Q  P  P  R  S  V  R  W  L  H  S  I  M  T  I  E  L  K  L  *  W  P  M  V  K  T  F  S  Y  N  H  *  N  D  I  I  I  I  V  *  G  I  Y  I  L  I  A  Y  L  M  Y  L  Y  M  N  L  E  *  H  G  K  P  Y  I  *  L  W  L  *  V  G  L  L  Y  L  Q  L  C  Q  *  N  T  I  Y  *  T  S  S  S  S  </second_frame>
            <third_frame>   T  S  F  L  V  F  S  Y  L  I  G  A  T  C  C  *  I  R  Y  W  K  *  W  D  H  L  S  G  E  M  C  L  I  R  K  V  P  W  Q  R  I  I  Q  A  E  F  F  L  *  S  L  F  S  Y  L  C  L  E  I  L  K  C  R  N  F  F  Y  H  A  R  H  R  L  E  I  Y  *  K  A  C  T  D  S  S :   L  L  R  I  L  Q  *  Q  L  K  K  D  I  K  S  E  V  L  M  T  Y  *  L  Q  P  L  A  H  W  N  T  T  N  L  E  *  C  I  *   : V  I  Q  F  A  V  Q  D  E  C  F  N  P  N  D  H  S  L  T  F  C  R  L  N  V  V  R  G  K  E  R  G  S  R  M  Q  S  S  S  N  Y  L  *  *  H  Q  L  S  G  *  V  G  L  L  L  S  L  I  D  H  S  N  K  N  V  E  F  L  L  N  L  L  D  Q  C  D  G  Y  I  Q  L  *  P  L  N  *  N  C  N  G  L  W  L  K  H  S  V  T  T  I  E  M  T  L  *  L  L  S  E  V  Y  I  F  L  L  H  I  *  C  I  F  I  *  I  *  N  D  M  G  N  L  I  F  D  S  G  C  K  L  D  S  Y  T  Y  N  F  V  N  E  T  Q  Y  T  K  L  V  P  H  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73335" stop="73084"/>
                    <exon start="72698" stop="72600"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLLPCFFLFDRSNMLLNQILEVMGSFIRGNVPHSKGALAKDHSSRILSVVSVLLLVLGDIKMQKLLLSCKTQIRNILESMHRLESSEDITMTIEERHKIRSAYDILTAAVSTLEYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81356" e_stop="80790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="81356" e_stop="80790" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81356" stop="80790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAATCACATATCCTCAACAACAACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAAAGGCAATCACTAGATCAGCAAAACACAATATCAAGTTCACTAATGATAAGTATGTGCAATGTAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCGCACAGTTCACAACAACCACAAAAACATGAAGTTACATAAACAATGATTC</gDNA_template>
            <first_frame> N  K  S  H  I  L  N  N  N  T  S  T  N  H  I  S  S  T  T  T  L  Q  Q  I  I  Y  P  Q  *  Q  A  Q  Y  S  T  I  T  S  S  A  K  R  Q  S  L  D  Q  Q  N  T  I  S  S  S  L  M  I  S  M  C  N  V  M  E  C  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  C  I  C  R  G  A  R  H  D  P  R  *  *  *  P  S  R  R  A  I  R  P  S  K  Y  S  I  H  R  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  P  I  I  S  Q  C  T  *  H  L  P  Q  P  M  P  Q  N  N  A  D  D  K  F  T  H  I  M  R  R  *  P  F  S  *  H  R  T  V  H  N  N  H  K  N  M  K  L  H  K  Q  *  F </first_frame>
            <second_frame>  T  N  H  I  S  S  T  T  T  L  Q  Q  I  T  Y  P  Q  Q  Q  H  F  N  K  L  Y  I  L  N  N  K  L  S  I  Q  Q  S  Q  V  P  Q  K  G  N  H  *  I  S  K  T  Q  Y  Q  V  H  *  *  *  V  C  A  M  *  W  N  A  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  A  S  V  A  A  H  D  T  T  L  D  N  S  N  H  R  G  A  R  Y  V  P  R  N  I  V  S  I  A  A  R  D  T  S  L  E  M  V  H  P  L  K  Y  P  L  F  L  N  A  H  N  T  C  H  N  Q  C  L  R  I  M  Q  M  T  S  S  H  I  *  *  G  D  D  H  F  H  N  I  A  Q  F  T  T  T  T  K  T  *  S  Y  I  N  N  D   </second_frame>
            <third_frame>   Q  I  T  Y  P  Q  Q  Q  H  F  N  K  S  H  I  L  N  N  N  T  S  T  N  Y  I  S  S  I  T  S  S  V  F  N  N  H  K  F  R  K  K  A  I  T  R  S  A  K  H  N  I  K  F  T  N  D  K  Y  V  Q  C  N  G  M  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  H  L  S  R  R  T  T  R  P  S  I  I  V  T  I  A  A  R  D  T  S  L  E  I  *  Y  P  S  R  R  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  Y  F  S  M  H  I  T  L  A  T  T  N  A  S  E  *  C  R  *  Q  V  H  T  Y  N  E  E  M  T  I  F  I  T  S  H  S  S  Q  Q  P  Q  K  H  E  V  T  *  T  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81133" stop="80867"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDTHPLSLSPGPMGDISVHASVAAHDTTLDNSNHRGARYVPRNIVSIAARDTSLEMVHPLKYPLFLNAHNTCHNQCLRIMQMTSSHI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81354" stop="81148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QITYPQQQHFNKSHILNNNTSTNYISSITSSVFNNHKFRKKAITRSAKHNIKFTNDKYVQCNGMQCQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="81616" e_stop="81411"/>
            <exon e_start="81347" e_stop="81234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.922"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="81616" e_stop="81411" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81410" i_stop="81348" i_length="63"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="81347" e_stop="81234" e_length="114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81616" stop="81411"/>
              <exon start="81347" stop="81234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCACCCCCAACCGAACCTCCACAACTACAACCTACATAAACATCAGCCCAACCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCCACAACAACACTTTACAAATTATATATCCTCAACATCAACACTTAAACAAATTAG : CATATCCTCAACAACAACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</gDNA_template>
            <first_frame> Y  H  P  Q  P  N  L  H  N  Y  N  L  H  K  H  Q  P  N  L  T  T  H  S  L  H  R  T  *  L  N  K  N  I  *  T  N  Y  I  S  S  T  T  T  L  *  Q  I  T  Y  P  P  Q  Q  H  F  T  N  Y  I  S  S  T  S  T  L  K  Q  I  S :   I  S  S  T  T  T  L  Q  Q  I  T  Y  P  Q  Q  Q  H  F  N  K  L  Y  I  L  N  N  K  L  S  I  Q  Q  S  Q  V  P  Q   </first_frame>
            <second_frame>  T  T  P  N  R  T  S  T  T  T  T  Y  I  N  I  S  P  T  *  Q  L  T  V  Y  I  E  R  N  S  T  K  T  F  R  Q  I  T  Y  P  P  Q  Q  H  F  N  K  L  H  I  L  H  N  N  T  L  Q  I  I  Y  P  Q  H  Q  H  L  N  K  L   : A  Y  P  Q  Q  Q  H  F  N  K  S  H  I  L  N  N  N  T  S  T  N  Y  I  S  S  I  T  S  S  V  F  N  N  H  K  F  R  K  </second_frame>
            <third_frame>   P  P  P  T  E  P  P  Q  L  Q  P  T  *  T  S  A  Q  P  N  N  S  Q  F  T  *  N  V  T  Q  Q  K  H  L  D  K  L  H  I  L  H  N  N  T  L  T  N  Y  I  S  S  T  T  T  L  Y  K  L  Y  I  L  N  I  N  T  *  T  N  *  :  H  I  L  N  N  N  T  S  T  N  H  I  S  S  T  T  T  L  Q  Q  I  I  Y  P  Q  *  Q  A  Q  Y  S  T  I  T  S  S  A  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81558" stop="81411"/>
                    <exon start="81347" stop="81235"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTVYIERNSTKTFRQITYPPQQHFNKLHILHNNTLQIIYPQHQHLNKLAYPQQQHFNKSHILNNNTSTNYISSITSSVFNNHKFRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="91183" PGL_stop="86415"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91183" e_stop="91048"/>
            <exon e_start="90951" e_stop="90879"/>
            <exon e_start="90028" e_stop="89906"/>
            <exon e_start="89172" e_stop="89003"/>
            <exon e_start="86564" e_stop="86415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="0.731" e_score="1.000"/>
          <exon-intron don_prob="0.737" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="91183" e_stop="91048" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91047" i_stop="90952" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90951" e_stop="90879" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.731">
            <gDNA_intron_boundary i_start="90878" i_stop="90029" i_length="850"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90028" e_stop="89906" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.737" acc_prob="0.967">
            <gDNA_intron_boundary i_start="89905" i_stop="89173" i_length="733"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89172" e_stop="89003" e_length="170"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.988">
            <gDNA_intron_boundary i_start="89002" i_stop="86565" i_length="2438"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="86564" e_stop="86415" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91183" stop="91048"/>
              <exon start="90951" stop="90879"/>
              <exon start="90028" stop="89906"/>
              <exon start="89172" stop="89003"/>
              <exon start="86564" stop="86415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTGTTAGCTGATAAACCCTAATTCAAATTCTTGATTTTTTAAAAAAAATTTAGTAACTTTTTTCTCTGCGATTAATAATGGTGAAGAATAAAGCTCAATCAAAAAAGCAGCAAAAACGTGGTGTTGATTTCAAA : AAAATAAGAAGGAAGATTGGAAGAAAATTGCCTCCTGCACAGAATGCCACCAACACTGAAATCAAATCAAAAG : CAATCATTCTACCTGAGCAAAGTATAGCTTCGGAGAAGGCTGGTTTAGCTGTGAGCAAGAAAGGTTTAACCTTGAAAGAGCTTCTTCAGCAAACAAGTCATCACAATGCGAAAGTTCGTAAAG : ATGCATTAATCGGAATTAGAGACGTTCTTCTTAAATTCCCATCTGAGTTGAAACTGCATAAGCTTGCTGTTATTGAGAAACTGAGGGAACGTATCAGTGATGATGATAAGTTGGTCCGTGAAGCACTATATCAACTTCTCAAATCAGTTATTTTTCCTGGCTGTAAAGAG : GATAATAAGGGGCCAATTAATTCCTTGATGATGACATATATATTTAATGCAATGACACACATGGCTATTGAAGTGCGGTTGATGGCTTTCAAATTTTTTGACCTCTTGATCCATTATTTTCCATCTTGCTTTTTGCTGTATGCTGAGAAG</gDNA_template>
            <first_frame> L  C  *  L  I  N  P  N  S  N  S  *  F  F  K  K  N  L  V  T  F  F  S  A  I  N  N  G  E  E  *  S  S  I  K  K  A  A  K  T  W  C  *  F  Q   : K  N  K  K  E  D  W  K  K  I  A  S  C  T  E  C  H  Q  H  *  N  Q  I  K  S :   N  H  S  T  *  A  K  Y  S  F  G  E  G  W  F  S  C  E  Q  E  R  F  N  L  E  R  A  S  S  A  N  K  S  S  Q  C  E  S  S  *  R :   C  I  N  R  N  *  R  R  S  S  *  I  P  I  *  V  E  T  A  *  A  C  C  Y  *  E  T  E  G  T  Y  Q  *  *  *  *  V  G  P  *  S  T  I  S  T  S  Q  I  S  Y  F  S  W  L  *  R   : G  *  *  G  A  N  *  F  L  D  D  D  I  Y  I  *  C  N  D  T  H  G  Y  *  S  A  V  D  G  F  Q  I  F  *  P  L  D  P  L  F  S  I  L  L  F  A  V  C  *  E  </first_frame>
            <second_frame>  C  V  S  *  *  T  L  I  Q  I  L  D  F  L  K  K  I  *  *  L  F  S  L  R  L  I  M  V  K  N  K  A  Q  S  K  K  Q  Q  K  R  G  V  D  F  K  :  K  I  R  R  K  I  G  R  K  L  P  P  A  Q  N  A  T  N  T  E  I  K  S  K   : A  I  I  L  P  E  Q  S  I  A  S  E  K  A  G  L  A  V  S  K  K  G  L  T  L  K  E  L  L  Q  Q  T  S  H  H  N  A  K  V  R  K   : D  A  L  I  G  I  R  D  V  L  L  K  F  P  S  E  L  K  L  H  K  L  A  V  I  E  K  L  R  E  R  I  S  D  D  D  K  L  V  R  E  A  L  Y  Q  L  L  K  S  V  I  F  P  G  C  K  E  :  D  N  K  G  P  I  N  S  L  M  M  T  Y  I  F  N  A  M  T  H  M  A  I  E  V  R  L  M  A  F  K  F  F  D  L  L  I  H  Y  F  P  S  C  F  L  L  Y  A  E  K </second_frame>
            <third_frame>   V  L  A  D  K  P  *  F  K  F  L  I  F  *  K  K  F  S  N  F  F  L  C  D  *  *  W  *  R  I  K  L  N  Q  K  S  S  K  N  V  V  L  I  S  K :   K  *  E  G  R  L  E  E  N  C  L  L  H  R  M  P  P  T  L  K  S  N  Q  K  :  Q  S  F  Y  L  S  K  V  *  L  R  R  R  L  V  *  L  *  A  R  K  V  *  P  *  K  S  F  F  S  K  Q  V  I  T  M  R  K  F  V  K  :  M  H  *  S  E  L  E  T  F  F  L  N  S  H  L  S  *  N  C  I  S  L  L  L  L  R  N  *  G  N  V  S  V  M  M  I  S  W  S  V  K  H  Y  I  N  F  S  N  Q  L  F  F  L  A  V  K  R :   I  I  R  G  Q  L  I  P  *  *  *  H  I  Y  L  M  Q  *  H  T  W  L  L  K  C  G  *  W  L  S  N  F  L  T  S  *  S  I  I  F  H  L  A  F  C  C  M  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91125" stop="91048"/>
                    <exon start="90951" stop="90879"/>
                    <exon start="90028" stop="89906"/>
                    <exon start="89172" stop="89003"/>
                    <exon start="86564" stop="86415"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSLRLIMVKNKAQSKKQQKRGVDFKKIRRKIGRKLPPAQNATNTEIKSKAIILPEQSIASEKAGLAVSKKGLTLKELLQQTSHHNAKVRKDALIGIRDVLLKFPSELKLHKLAVIEKLRERISDDDKLVREALYQLLKSVIFPGCKEDNKGPINSLMMTYIFNAMTHMAIEVRLMAFKFFDLLIHYFPSCFLLYAEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="98198" PGL_stop="94691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98198" e_stop="95424"/>
            <exon e_start="95285" e_stop="94691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.912" e_score="0.998"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="98198" e_stop="95424" e_length="2775"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.912">
            <gDNA_intron_boundary i_start="95423" i_stop="95286" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="95285" e_stop="94691" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98198" stop="95424"/>
              <exon start="95285" stop="94691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTGATTTAGCATTATTAGATGAAAAATCCACTTTTATATGGTCATTTCTTGCTACTAAATCTTCATTTATCATAAAAAAGATCAAATTTTTTGGATTACTCTGTAAAAACTACTGTGTTGTCAGCAAGAACAACACCATAGTAGTAGCAAGTAGCAACTACCAAGCATTGTGCTTTTTCTCACTCCAATTATCACTCTCTTTCTCCTTTTTTATGTTTTGGGGTTTAGTGATCTGAACCCCATGTTTTCCACATCTTATTGTCTCAAGATTTGACATGGGGGTCTTCAAGAATCAACCTCATTAGGTGGCAAAGATTGAAGCTTTCTTGATTTTTGTTGTAGTGGGGTGTTTTCTTTTTTGTTGTTGAATGTTAATGCAAATGCTCAAATGTTGTTGCTTTGTGGATCATCTATGGAGTTATATTTTCACCACATATGGTTTGTTGTAGCTTTGTTTCTTGCTTTTGCTTCACTTGTTTTCACTGTCACTGACCCTAATGACTTGTCAATTATTAATGAGTTTAGAAAAGGGTTGGAAAATCCTGAGGTCTTGAAATGGCCTGAAAATGGTGGAGACCCTTGTGGTTCTCCAGTTTGGCCACATATTGTGTGTAGTGGTAGTAGAATTCAGCAGATTCAAGTTATGGGGTTAGGGTTAAAAGGGCCTTTACCTCAAAACTTGAATAAGTTGTCTAGGTTGACACATTTGGGGTTGCAAAAGAATCAATTTAGTGGAAAGTTGCCATCTTTTAGTGGTTTATCTGAATTGAGCTTTGCTTACTTGGATTTCAATCAGTTTGACACAATCCCATTAGATTTTTTTGATGGACTTGTGAATCTACAAGTTTTGGCTTTAGATGAAAATCCTCTAAATGCTACTAGTGGTTGGTCATTGCCAAATGGGCTTCAAGATTCAGCTCAGTTGATCAATTTAACAATGATAAACTGCAATTTAGCTGGTCCTTTGCCTGAATTTCTTGGAACTATGTCTTCTTTAGAGGTTTTGTTGTTGTCTACAAATAGGCTTTCAGGGCCTATTCCAGGTACTTTCAAGGATGCAGTGCTGAAGATGCTTTGGTTGAACGATCAGTCGGGTGATGGTATGAGTGGTTCAATAGATGTTGTTGCAACTATGGTATCACTTACACATCTTTGGCTTCATGGGAATCAATTTTCAGGTAAAATCCCAGTAGAGATTGGTAATCTAACAAATCTGAAGGATCTCAGTGTGAATACAAATAACCTTGTTGGATTAATCCCTGAAAGTTTAGCTAATATGCCATTAGACAATCTTGATTTGAATAATAATCATTTTATGGGACCAGTTCCTAAGTTCAAGGCTACTAATGTTAGTTTTATGTCCAACTCTTTTTGTCAAACCAAACAAGGAGCAGTATGTGCCCCTGAGGTTATGGCACTTTTAGAGTTTCTTGATGGGGTGAATTATCCTTCTAGGCTTGTTGAATCATGGTCTGGAAACAACCCTTGTGACGGACGTTGGTGGGGAATAAGCTGTGACGATAACCAAAAAGTTAGTGTTATAAACTTGCCCAAGTCTAATCTTTCCGGGACCTTGAGTCCTTCAATCGCGAACCTTGAAACCGTTACTCACATTTATCTTGAATCAAATAATCTTTCTGGTTTTGTTCCATCTAGTTGGACTAGTTTGAAATCTCTGTCTATTCTTGATTTGAGTAATAACAATATTTCCCCACCTTTGCCTAAATTTACCACCCCTTTGAAACTTGTTCTAAATGGAAATCCAAAGCTGACTTCTAATCCTCCTGGAGCAAATCCTTCACCAAACAACAGCACAACTCCTGCAGATTCACCCACGTCGTCTGTACCATCTTCACGACCCAACAGTTCAAGCTCTGTGATCTTTAAACCCAGTGAACAGTCACCCGAGAAAAAGGACTCAAAGTCAAAGATAGCTATAGTTGTGGTTCCTATTGCTGGTTTTCTACTTTTGGTTTGTCTTGCTATTCCACTGTACATTTATGTCTGTAAGAAGAGTAAAGATAAGCATCAAGCTCCAACTGCTCTTGTGGTTCATCCTAGAGATCCGTCTGATTCGGATAATGTAGTCAAGATTGCGATTGCCAATCAGACTAATGGAAGTCTTTCCACAGTAAATGCAAGTGGTTCTGCTAGCATACACAGTGGTGAATCCCATTTGATCGAAGCTGGGAATTTGCTCATATCGGTTCAAGTACTTCGGAATGTGACTAAGAATTTTTCTCCGGAAAATGAACTTGGACGTGGTGGTTTTGGTGTGGTTTATAAGGGAGAATTAGATGATGGGACACAAATAGCTGTCAAAAGAATGGAGGCTGGTATTGTTAGCAACAAAGCTTTGGATGAATTTCGATCTGAAATTGATGTCCTCTCAAAAGTCCGGCATCGACATTTAGTGTCTCTACTGGGATACTCTGTTGAAGGTAGTGAAAGAATTCTGGTTTATGAGTACATGCCACAAGGTGCACTTAGTAGACATCTTTTCCGCTGGAAAAACTTCAAGTTAGAGCCTCTCTCTTGGAAGAAAAGGCTTAATATTGCCTTAGATGTTGCTAGAGGTGTGGAGTATCTACACACACTAGCACATCAGAGCTTCATTCATAGAGATCTCAAATCCTCAAATATCTTGTTGGGTGATGATTTCCGAGCAAAAGTATCCGACTTTGGACTTGTGAAACTCGCTCCTGATAAAGAGAAATCTGTTGTCACCAGGCTGGCTGGAACTTTTGGATATCTGGCACCTGAATATGCTG : TTACGGGTAAAATCACCACGAAAGCTGATGTATTTAGCTTTGGTGTTGTGCTAATGGAGTTGTTAACTGGGATGATGGCACTTGATGAGGATAGACCTGAGGAAAGCCAGTACTTGGTTTCGTGGTTCTGGAACGCCAAATCCTCTAAAGAGAAGCTTATGACAGTCATTGATCCAACTCTAGACGTGAAAGATGAGATAACCGAGAGCATTTCCACCTTAGCTGAACTTGCTGGTCATTGCACTGCAAGAGAACCTGGTCAACGGCCAGATATGGGCCACGCTGTAAACGTGCTGTCCCCACTTGTTGAGAAATGGAAGCCTCTTGAGGATGATCCAGAGGACTATTGTGGTATCGACTACAGTCTTCCCCTCAATCAAATGGTCAAGGGTTGGCAAGAATCGGAAGGAAAAGACTTAAGTTACGTGGATCTCGAGGACAGTAAGGGCAGTATCCCAGCAAGACCAACTGGATTTGCAGATTCATTTACATCAGCTGATGGTAGATAATGGAGGTACTTCTATGTAGTAGATGTAGATATCAATTTTCTTTGTATTGTATTGAGATTTTGATCGTATTTTCCACGTGCCTTCGC</gDNA_template>
            <first_frame> F  L  D  L  A  L  L  D  E  K  S  T  F  I  W  S  F  L  A  T  K  S  S  F  I  I  K  K  I  K  F  F  G  L  L  C  K  N  Y  C  V  V  S  K  N  N  T  I  V  V  A  S  S  N  Y  Q  A  L  C  F  F  S  L  Q  L  S  L  S  F  S  F  F  M  F  W  G  L  V  I  *  T  P  C  F  P  H  L  I  V  S  R  F  D  M  G  V  F  K  N  Q  P  H  *  V  A  K  I  E  A  F  L  I  F  V  V  V  G  C  F  L  F  C  C  *  M  L  M  Q  M  L  K  C  C  C  F  V  D  H  L  W  S  Y  I  F  T  T  Y  G  L  L  *  L  C  F  L  L  L  L  H  L  F  S  L  S  L  T  L  M  T  C  Q  L  L  M  S  L  E  K  G  W  K  I  L  R  S  *  N  G  L  K  M  V  E  T  L  V  V  L  Q  F  G  H  I  L  C  V  V  V  V  E  F  S  R  F  K  L  W  G  *  G  *  K  G  L  Y  L  K  T  *  I  S  C  L  G  *  H  I  W  G  C  K  R  I  N  L  V  E  S  C  H  L  L  V  V  Y  L  N  *  A  L  L  T  W  I  S  I  S  L  T  Q  S  H  *  I  F  L  M  D  L  *  I  Y  K  F  W  L  *  M  K  I  L  *  M  L  L  V  V  G  H  C  Q  M  G  F  K  I  Q  L  S  *  S  I  *  Q  *  *  T  A  I  *  L  V  L  C  L  N  F  L  E  L  C  L  L  *  R  F  C  C  C  L  Q  I  G  F  Q  G  L  F  Q  V  L  S  R  M  Q  C  *  R  C  F  G  *  T  I  S  R  V  M  V  *  V  V  Q  *  M  L  L  Q  L  W  Y  H  L  H  I  F  G  F  M  G  I  N  F  Q  V  K  S  Q  *  R  L  V  I  *  Q  I  *  R  I  S  V  *  I  Q  I  T  L  L  D  *  S  L  K  V  *  L  I  C  H  *  T  I  L  I  *  I  I  I  I  L  W  D  Q  F  L  S  S  R  L  L  M  L  V  L  C  P  T  L  F  V  K  P  N  K  E  Q  Y  V  P  L  R  L  W  H  F  *  S  F  L  M  G  *  I  I  L  L  G  L  L  N  H  G  L  E  T  T  L  V  T  D  V  G  G  E  *  A  V  T  I  T  K  K  L  V  L  *  T  C  P  S  L  I  F  P  G  P  *  V  L  Q  S  R  T  L  K  P  L  L  T  F  I  L  N  Q  I  I  F  L  V  L  F  H  L  V  G  L  V  *  N  L  C  L  F  L  I  *  V  I  T  I  F  P  H  L  C  L  N  L  P  P  L  *  N  L  F  *  M  E  I  Q  S  *  L  L  I  L  L  E  Q  I  L  H  Q  T  T  A  Q  L  L  Q  I  H  P  R  R  L  Y  H  L  H  D  P  T  V  Q  A  L  *  S  L  N  P  V  N  S  H  P  R  K  R  T  Q  S  Q  R  *  L  *  L  W  F  L  L  L  V  F  Y  F  W  F  V  L  L  F  H  C  T  F  M  S  V  R  R  V  K  I  S  I  K  L  Q  L  L  L  W  F  I  L  E  I  R  L  I  R  I  M  *  S  R  L  R  L  P  I  R  L  M  E  V  F  P  Q  *  M  Q  V  V  L  L  A  Y  T  V  V  N  P  I  *  S  K  L  G  I  C  S  Y  R  F  K  Y  F  G  M  *  L  R  I  F  L  R  K  M  N  L  D  V  V  V  L  V  W  F  I  R  E  N  *  M  M  G  H  K  *  L  S  K  E  W  R  L  V  L  L  A  T  K  L  W  M  N  F  D  L  K  L  M  S  S  Q  K  S  G  I  D  I  *  C  L  Y  W  D  T  L  L  K  V  V  K  E  F  W  F  M  S  T  C  H  K  V  H  L  V  D  I  F  S  A  G  K  T  S  S  *  S  L  S  L  G  R  K  G  L  I  L  P  *  M  L  L  E  V  W  S  I  Y  T  H  *  H  I  R  A  S  F  I  E  I  S  N  P  Q  I  S  C  W  V  M  I  S  E  Q  K  Y  P  T  L  D  L  *  N  S  L  L  I  K  R  N  L  L  S  P  G  W  L  E  L  L  D  I  W  H  L  N  M  L  :  L  R  V  K  S  P  R  K  L  M  Y  L  A  L  V  L  C  *  W  S  C  *  L  G  *  W  H  L  M  R  I  D  L  R  K  A  S  T  W  F  R  G  S  G  T  P  N  P  L  K  R  S  L  *  Q  S  L  I  Q  L  *  T  *  K  M  R  *  P  R  A  F  P  P  *  L  N  L  L  V  I  A  L  Q  E  N  L  V  N  G  Q  I  W  A  T  L  *  T  C  C  P  H  L  L  R  N  G  S  L  L  R  M  I  Q  R  T  I  V  V  S  T  T  V  F  P  S  I  K  W  S  R  V  G  K  N  R  K  E  K  T  *  V  T  W  I  S  R  T  V  R  A  V  S  Q  Q  D  Q  L  D  L  Q  I  H  L  H  Q  L  M  V  D  N  G  G  T  S  M  *  *  M  *  I  S  I  F  F  V  L  Y  *  D  F  D  R  I  F  H  V  P  S  </first_frame>
            <second_frame>  F  L  I  *  H  Y  *  M  K  N  P  L  L  Y  G  H  F  L  L  L  N  L  H  L  S  *  K  R  S  N  F  L  D  Y  S  V  K  T  T  V  L  S  A  R  T  T  P  *  *  *  Q  V  A  T  T  K  H  C  A  F  S  H  S  N  Y  H  S  L  S  P  F  L  C  F  G  V  *  *  S  E  P  H  V  F  H  I  L  L  S  Q  D  L  T  W  G  S  S  R  I  N  L  I  R  W  Q  R  L  K  L  S  *  F  L  L  *  W  G  V  F  F  F  V  V  E  C  *  C  K  C  S  N  V  V  A  L  W  I  I  Y  G  V  I  F  S  P  H  M  V  C  C  S  F  V  S  C  F  C  F  T  C  F  H  C  H  *  P  *  *  L  V  N  Y  *  *  V  *  K  R  V  G  K  S  *  G  L  E  M  A  *  K  W  W  R  P  L  W  F  S  S  L  A  T  Y  C  V  *  W  *  *  N  S  A  D  S  S  Y  G  V  R  V  K  R  A  F  T  S  K  L  E  *  V  V  *  V  D  T  F  G  V  A  K  E  S  I  *  W  K  V  A  I  F  *  W  F  I  *  I  E  L  C  L  L  G  F  Q  S  V  *  H  N  P  I  R  F  F  *  W  T  C  E  S  T  S  F  G  F  R  *  K  S  S  K  C  Y  *  W  L  V  I  A  K  W  A  S  R  F  S  S  V  D  Q  F  N  N  D  K  L  Q  F  S  W  S  F  A  *  I  S  W  N  Y  V  F  F  R  G  F  V  V  V  Y  K  *  A  F  R  A  Y  S  R  Y  F  Q  G  C  S  A  E  D  A  L  V  E  R  S  V  G  *  W  Y  E  W  F  N  R  C  C  C  N  Y  G  I  T  Y  T  S  L  A  S  W  E  S  I  F  R  *  N  P  S  R  D  W  *  S  N  K  S  E  G  S  Q  C  E  Y  K  *  P  C  W  I  N  P  *  K  F  S  *  Y  A  I  R  Q  S  *  F  E  *  *  S  F  Y  G  T  S  S  *  V  Q  G  Y  *  C  *  F  Y  V  Q  L  F  L  S  N  Q  T  R  S  S  M  C  P  *  G  Y  G  T  F  R  V  S  *  W  G  E  L  S  F  *  A  C  *  I  M  V  W  K  Q  P  L  *  R  T  L  V  G  N  K  L  *  R  *  P  K  S  *  C  Y  K  L  A  Q  V  *  S  F  R  D  L  E  S  F  N  R  E  P  *  N  R  Y  S  H  L  S  *  I  K  *  S  F  W  F  C  S  I  *  L  D  *  F  E  I  S  V  Y  S  *  F  E  *  *  Q  Y  F  P  T  F  A  *  I  Y  H  P  F  E  T  C  S  K  W  K  S  K  A  D  F  *  S  S  W  S  K  S  F  T  K  Q  Q  H  N  S  C  R  F  T  H  V  V  C  T  I  F  T  T  Q  Q  F  K  L  C  D  L  *  T  Q  *  T  V  T  R  E  K  G  L  K  V  K  D  S  Y  S  C  G  S  Y  C  W  F  S  T  F  G  L  S  C  Y  S  T  V  H  L  C  L  *  E  E  *  R  *  A  S  S  S  N  C  S  C  G  S  S  *  R  S  V  *  F  G  *  C  S  Q  D  C  D  C  Q  S  D  *  W  K  S  F  H  S  K  C  K  W  F  C  *  H  T  Q  W  *  I  P  F  D  R  S  W  E  F  A  H  I  G  S  S  T  S  E  C  D  *  E  F  F  S  G  K  *  T  W  T  W  W  F  W  C  G  L  *  G  R  I  R  *  W  D  T  N  S  C  Q  K  N  G  G  W  Y  C  *  Q  Q  S  F  G  *  I  S  I  *  N  *  C  P  L  K  S  P  A  S  T  F  S  V  S  T  G  I  L  C  *  R  *  *  K  N  S  G  L  *  V  H  A  T  R  C  T  *  *  T  S  F  P  L  E  K  L  Q  V  R  A  S  L  L  E  E  K  A  *  Y  C  L  R  C  C  *  R  C  G  V  S  T  H  T  S  T  S  E  L  H  S  *  R  S  Q  I  L  K  Y  L  V  G  *  *  F  P  S  K  S  I  R  L  W  T  C  E  T  R  S  *  *  R  E  I  C  C  H  Q  A  G  W  N  F  W  I  S  G  T  *  I  C  C :   Y  G  *  N  H  H  E  S  *  C  I  *  L  W  C  C  A  N  G  V  V  N  W  D  D  G  T  *  *  G  *  T  *  G  K  P  V  L  G  F  V  V  L  E  R  Q  I  L  *  R  E  A  Y  D  S  H  *  S  N  S  R  R  E  R  *  D  N  R  E  H  F  H  L  S  *  T  C  W  S  L  H  C  K  R  T  W  S  T  A  R  Y  G  P  R  C  K  R  A  V  P  T  C  *  E  M  E  A  S  *  G  *  S  R  G  L  L  W  Y  R  L  Q  S  S  P  Q  S  N  G  Q  G  L  A  R  I  G  R  K  R  L  K  L  R  G  S  R  G  Q  *  G  Q  Y  P  S  K  T  N  W  I  C  R  F  I  Y  I  S  *  W  *  I  M  E  V  L  L  C  S  R  C  R  Y  Q  F  S  L  Y  C  I  E  I  L  I  V  F  S  T  C  L  R </second_frame>
            <third_frame>   S  *  F  S  I  I  R  *  K  I  H  F  Y  M  V  I  S  C  Y  *  I  F  I  Y  H  K  K  D  Q  I  F  W  I  T  L  *  K  L  L  C  C  Q  Q  E  Q  H  H  S  S  S  K  *  Q  L  P  S  I  V  L  F  L  T  P  I  I  T  L  F  L  L  F  Y  V  L  G  F  S  D  L  N  P  M  F  S  T  S  Y  C  L  K  I  *  H  G  G  L  Q  E  S  T  S  L  G  G  K  D  *  S  F  L  D  F  C  C  S  G  V  F  S  F  L  L  L  N  V  N  A  N  A  Q  M  L  L  L  C  G  S  S  M  E  L  Y  F  H  H  I  W  F  V  V  A  L  F  L  A  F  A  S  L  V  F  T  V  T  D  P  N  D  L  S  I  I  N  E  F  R  K  G  L  E  N  P  E  V  L  K  W  P  E  N  G  G  D  P  C  G  S  P  V  W  P  H  I  V  C  S  G  S  R  I  Q  Q  I  Q  V  M  G  L  G  L  K  G  P  L  P  Q  N  L  N  K  L  S  R  L  T  H  L  G  L  Q  K  N  Q  F  S  G  K  L  P  S  F  S  G  L  S  E  L  S  F  A  Y  L  D  F  N  Q  F  D  T  I  P  L  D  F  F  D  G  L  V  N  L  Q  V  L  A  L  D  E  N  P  L  N  A  T  S  G  W  S  L  P  N  G  L  Q  D  S  A  Q  L  I  N  L  T  M  I  N  C  N  L  A  G  P  L  P  E  F  L  G  T  M  S  S  L  E  V  L  L  L  S  T  N  R  L  S  G  P  I  P  G  T  F  K  D  A  V  L  K  M  L  W  L  N  D  Q  S  G  D  G  M  S  G  S  I  D  V  V  A  T  M  V  S  L  T  H  L  W  L  H  G  N  Q  F  S  G  K  I  P  V  E  I  G  N  L  T  N  L  K  D  L  S  V  N  T  N  N  L  V  G  L  I  P  E  S  L  A  N  M  P  L  D  N  L  D  L  N  N  N  H  F  M  G  P  V  P  K  F  K  A  T  N  V  S  F  M  S  N  S  F  C  Q  T  K  Q  G  A  V  C  A  P  E  V  M  A  L  L  E  F  L  D  G  V  N  Y  P  S  R  L  V  E  S  W  S  G  N  N  P  C  D  G  R  W  W  G  I  S  C  D  D  N  Q  K  V  S  V  I  N  L  P  K  S  N  L  S  G  T  L  S  P  S  I  A  N  L  E  T  V  T  H  I  Y  L  E  S  N  N  L  S  G  F  V  P  S  S  W  T  S  L  K  S  L  S  I  L  D  L  S  N  N  N  I  S  P  P  L  P  K  F  T  T  P  L  K  L  V  L  N  G  N  P  K  L  T  S  N  P  P  G  A  N  P  S  P  N  N  S  T  T  P  A  D  S  P  T  S  S  V  P  S  S  R  P  N  S  S  S  S  V  I  F  K  P  S  E  Q  S  P  E  K  K  D  S  K  S  K  I  A  I  V  V  V  P  I  A  G  F  L  L  L  V  C  L  A  I  P  L  Y  I  Y  V  C  K  K  S  K  D  K  H  Q  A  P  T  A  L  V  V  H  P  R  D  P  S  D  S  D  N  V  V  K  I  A  I  A  N  Q  T  N  G  S  L  S  T  V  N  A  S  G  S  A  S  I  H  S  G  E  S  H  L  I  E  A  G  N  L  L  I  S  V  Q  V  L  R  N  V  T  K  N  F  S  P  E  N  E  L  G  R  G  G  F  G  V  V  Y  K  G  E  L  D  D  G  T  Q  I  A  V  K  R  M  E  A  G  I  V  S  N  K  A  L  D  E  F  R  S  E  I  D  V  L  S  K  V  R  H  R  H  L  V  S  L  L  G  Y  S  V  E  G  S  E  R  I  L  V  Y  E  Y  M  P  Q  G  A  L  S  R  H  L  F  R  W  K  N  F  K  L  E  P  L  S  W  K  K  R  L  N  I  A  L  D  V  A  R  G  V  E  Y  L  H  T  L  A  H  Q  S  F  I  H  R  D  L  K  S  S  N  I  L  L  G  D  D  F  R  A  K  V  S  D  F  G  L  V  K  L  A  P  D  K  E  K  S  V  V  T  R  L  A  G  T  F  G  Y  L  A  P  E  Y  A   : V  T  G  K  I  T  T  K  A  D  V  F  S  F  G  V  V  L  M  E  L  L  T  G  M  M  A  L  D  E  D  R  P  E  E  S  Q  Y  L  V  S  W  F  W  N  A  K  S  S  K  E  K  L  M  T  V  I  D  P  T  L  D  V  K  D  E  I  T  E  S  I  S  T  L  A  E  L  A  G  H  C  T  A  R  E  P  G  Q  R  P  D  M  G  H  A  V  N  V  L  S  P  L  V  E  K  W  K  P  L  E  D  D  P  E  D  Y  C  G  I  D  Y  S  L  P  L  N  Q  M  V  K  G  W  Q  E  S  E  G  K  D  L  S  Y  V  D  L  E  D  S  K  G  S  I  P  A  R  P  T  G  F  A  D  S  F  T  S  A  D  G  R  *  W  R  Y  F  Y  V  V  D  V  D  I  N  F  L  C  I  V  L  R  F  *  S  Y  F  P  R  A  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97875" stop="95424"/>
                    <exon start="95285" stop="94777"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2958</number_coding_nucleotides>
                  <number_encoded_amino_acids>986</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLDFCCSGVFSFLLLNVNANAQMLLLCGSSMELYFHHIWFVVALFLAFASLVFTVTDPNDLSIINEFRKGLENPEVLKWPENGGDPCGSPVWPHIVCSGSRIQQIQVMGLGLKGPLPQNLNKLSRLTHLGLQKNQFSGKLPSFSGLSELSFAYLDFNQFDTIPLDFFDGLVNLQVLALDENPLNATSGWSLPNGLQDSAQLINLTMINCNLAGPLPEFLGTMSSLEVLLLSTNRLSGPIPGTFKDAVLKMLWLNDQSGDGMSGSIDVVATMVSLTHLWLHGNQFSGKIPVEIGNLTNLKDLSVNTNNLVGLIPESLANMPLDNLDLNNNHFMGPVPKFKATNVSFMSNSFCQTKQGAVCAPEVMALLEFLDGVNYPSRLVESWSGNNPCDGRWWGISCDDNQKVSVINLPKSNLSGTLSPSIANLETVTHIYLESNNLSGFVPSSWTSLKSLSILDLSNNNISPPLPKFTTPLKLVLNGNPKLTSNPPGANPSPNNSTTPADSPTSSVPSSRPNSSSSVIFKPSEQSPEKKDSKSKIAIVVVPIAGFLLLVCLAIPLYIYVCKKSKDKHQAPTALVVHPRDPSDSDNVVKIAIANQTNGSLSTVNASGSASIHSGESHLIEAGNLLISVQVLRNVTKNFSPENELGRGGFGVVYKGELDDGTQIAVKRMEAGIVSNKALDEFRSEIDVLSKVRHRHLVSLLGYSVEGSERILVYEYMPQGALSRHLFRWKNFKLEPLSWKKRLNIALDVARGVEYLHTLAHQSFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDKEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGMMALDEDRPEESQYLVSWFWNAKSSKEKLMTVIDPTLDVKDEITESISTLAELAGHCTAREPGQRPDMGHAVNVLSPLVEKWKPLEDDPEDYCGIDYSLPLNQMVKGWQESEGKDLSYVDLEDSKGSIPARPTGFADSFTSADGR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98198" stop="97959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLDLALLDEKSTFIWSFLATKSSFIIKKIKFFGLLCKNYCVVSKNNTIVVASSNYQALCFFSLQLSLSFSFFMFWGLVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="106632" PGL_stop="99748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106632" e_stop="106427"/>
            <exon e_start="105222" e_stop="105197"/>
            <exon e_start="104840" e_stop="104816"/>
            <exon e_start="102474" e_stop="102462"/>
            <exon e_start="99848" e_stop="99748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.411" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.940" e_score="0.692"/>
          <exon-intron don_prob="0.614" acc_prob="0.863" e_score="0.400"/>
          <exon-intron don_prob="0.381" acc_prob="0.860" e_score="0.615"/>
          <exon-only e_score="0.533"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106632" e_stop="106427" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.411">
            <gDNA_intron_boundary i_start="106426" i_stop="105223" i_length="1204"/>
          </intron>
          <exon e_serial="2" e_score="0.692">
            <gDNA_exon_boundary e_start="105222" e_stop="105197" e_length="26"/>
          </exon>
          <intron i_serial="2" don_prob="0.839" acc_prob="0.940">
            <gDNA_intron_boundary i_start="105196" i_stop="104841" i_length="356"/>
          </intron>
          <exon e_serial="3" e_score="0.400">
            <gDNA_exon_boundary e_start="104840" e_stop="104816" e_length="25"/>
          </exon>
          <intron i_serial="3" don_prob="0.614" acc_prob="0.863">
            <gDNA_intron_boundary i_start="104815" i_stop="102475" i_length="2341"/>
          </intron>
          <exon e_serial="4" e_score="0.615">
            <gDNA_exon_boundary e_start="102474" e_stop="102462" e_length="13"/>
          </exon>
          <intron i_serial="4" don_prob="0.381" acc_prob="0.860">
            <gDNA_intron_boundary i_start="102461" i_stop="99849" i_length="2613"/>
          </intron>
          <exon e_serial="5" e_score="0.533">
            <gDNA_exon_boundary e_start="99848" e_stop="99748" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106632" stop="106427"/>
              <exon start="105222" stop="105197"/>
              <exon start="104840" stop="104816"/>
              <exon start="102474" stop="102462"/>
              <exon start="99848" stop="99748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGCCACCCTCGGTTCCGCGACGACATGCCATCCGTCCCCGTCAACTTTTTCCGGCGACTACCGCCACTTTCCGATCAAATTCTCTAAAGATTGTTCAGTGGTGTTGTTATTGTTTTTTTCATTATTTTAGCCTTTTAGACTAGTTTTTCATGGTTGCTCTCTGTTTACTTTGTGTAAAACATGGCAATTGGCATAAAATTATTT : ATTGGCCAAAAAAAACTAGAAAAAAG : AGAAATTTCCAAAGGGCCAAGTGGT : ATAGTACAACTAT : TCGAACTCGAATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> Y  A  T  L  G  S  A  T  T  C  H  P  S  P  S  T  F  S  G  D  Y  R  H  F  P  I  K  F  S  K  D  C  S  V  V  L  L  L  F  F  S  L  F  *  P  F  R  L  V  F  H  G  C  S  L  F  T  L  C  K  T  W  Q  L  A  *  N  Y  L :   L  A  K  K  N  *  K  K   : E  K  F  P  K  G  Q  V  V :   *  Y  N  Y  :  S  N  S  N  H  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  T  P  P  S  V  P  R  R  H  A  I  R  P  R  Q  L  F  P  A  T  T  A  T  F  R  S  N  S  L  K  I  V  Q  W  C  C  Y  C  F  F  H  Y  F  S  L  L  D  *  F  F  M  V  A  L  C  L  L  C  V  K  H  G  N  W  H  K  I  I   : Y  W  P  K  K  T  R  K  K  :  R  N  F  Q  R  A  K  W   : Y  S  T  T  I :   R  T  R  I  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   R  H  P  R  F  R  D  D  M  P  S  V  P  V  N  F  F  R  R  L  P  P  L  S  D  Q  I  L  *  R  L  F  S  G  V  V  I  V  F  F  I  I  L  A  F  *  T  S  F  S  W  L  L  S  V  Y  F  V  *  N  M  A  I  G  I  K  L  F  :  I  G  Q  K  K  L  E  K  R :   E  I  S  K  G  P  S  G  :  I  V  Q  L   : F  E  L  E  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106487" stop="106427"/>
                    <exon start="105222" stop="105197"/>
                    <exon start="104840" stop="104816"/>
                    <exon start="102474" stop="102462"/>
                    <exon start="99848" stop="99749"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFMVALCLLCVKHGNWHKIIYWPKKTRKKRNFQRAKWYSTTIRTRIIFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106453" stop="106427"/>
                    <exon start="105222" stop="105197"/>
                    <exon start="104840" stop="104816"/>
                    <exon start="102474" stop="102462"/>
                    <exon start="99848" stop="99748"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMAIGIKLFIGQKKLEKREISKGPSGIVQLFELESFFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="117239" PGL_stop="114661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117239" e_stop="117193"/>
            <exon e_start="117111" e_stop="117009"/>
            <exon e_start="115686" e_stop="115494"/>
            <exon e_start="114814" e_stop="114661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.977" e_score="0.979"/>
          <exon-intron don_prob="0.997" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="117239" e_stop="117193" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.977">
            <gDNA_intron_boundary i_start="117192" i_stop="117112" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117111" e_stop="117009" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.877">
            <gDNA_intron_boundary i_start="117008" i_stop="115687" i_length="1322"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115686" e_stop="115494" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115493" i_stop="114815" i_length="679"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114814" e_stop="114661" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117239" stop="117193"/>
              <exon start="117111" stop="117009"/>
              <exon start="115686" stop="115494"/>
              <exon start="114814" stop="114661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584382" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTGAAGATGTTCGGTGGCTTTGTTCCTTAACCGAATCTGAGCTT : GATTTATTGATAGGTTTGAAAGTTCTGATACAACAACGTGCCAAAAAGATTGGTCACAAGTCTTTAGCTAACAAGTTTGATTTGAAGACCCTTCGAGCCCTCA : GTTTCGTTTTGATGGAGAATCTTAAAGGAAAACTTAGAGATCTCTCCGGTACACCTGATACAGCCGAGTTCTCATCAACTTTAGATGCATGTAATTTGTTGAATTATGTTCGAGACAAGACTTTTGCAAATATGGGGGTTGAACAGCTGAGCTCCTACATTTGCAACGACAAGAGGAAGAGAATTTTGGAGAT : GTTTTCTGAAGACATGGCTCCAAATAGAAAGCAGAGGAGTTAACAGTGACAACAGTAGATCCATGTAGCAATATAATTTAATTCCTAAAATGTAATATTCAAATTTTGATGTTAGGGAATATTATTTTCCATTTTTGCTTTCATTTTTTGAACT</gDNA_template>
            <first_frame> E  L  K  M  F  G  G  F  V  P  *  P  N  L  S  L :   I  Y  *  *  V  *  K  F  *  Y  N  N  V  P  K  R  L  V  T  S  L  *  L  T  S  L  I  *  R  P  F  E  P  S  :  V  S  F  *  W  R  I  L  K  E  N  L  E  I  S  P  V  H  L  I  Q  P  S  S  H  Q  L  *  M  H  V  I  C  *  I  M  F  E  T  R  L  L  Q  I  W  G  L  N  S  *  A  P  T  F  A  T  T  R  G  R  E  F  W  R   : C  F  L  K  T  W  L  Q  I  E  S  R  G  V  N  S  D  N  S  R  S  M  *  Q  Y  N  L  I  P  K  M  *  Y  S  N  F  D  V  R  E  Y  Y  F  P  F  L  L  S  F  F  E   </first_frame>
            <second_frame>  N  *  R  C  S  V  A  L  F  L  N  R  I  *  A   : *  F  I  D  R  F  E  S  S  D  T  T  T  C  Q  K  D  W  S  Q  V  F  S  *  Q  V  *  F  E  D  P  S  S  P  Q :   F  R  F  D  G  E  S  *  R  K  T  *  R  S  L  R  Y  T  *  Y  S  R  V  L  I  N  F  R  C  M  *  F  V  E  L  C  S  R  Q  D  F  C  K  Y  G  G  *  T  A  E  L  L  H  L  Q  R  Q  E  E  E  N  F  G  D  :  V  F  *  R  H  G  S  K  *  K  A  E  E  L  T  V  T  T  V  D  P  C  S  N  I  I  *  F  L  K  C  N  I  Q  I  L  M  L  G  N  I  I  F  H  F  C  F  H  F  L  N  </second_frame>
            <third_frame>   I  E  D  V  R  W  L  C  S  L  T  E  S  E  L  :  D  L  L  I  G  L  K  V  L  I  Q  Q  R  A  K  K  I  G  H  K  S  L  A  N  K  F  D  L  K  T  L  R  A  L   : S  F  V  L  M  E  N  L  K  G  K  L  R  D  L  S  G  T  P  D  T  A  E  F  S  S  T  L  D  A  C  N  L  L  N  Y  V  R  D  K  T  F  A  N  M  G  V  E  Q  L  S  S  Y  I  C  N  D  K  R  K  R  I  L  E  M :   F  S  E  D  M  A  P  N  R  K  Q  R  S  *  Q  *  Q  Q  *  I  H  V  A  I  *  F  N  S  *  N  V  I  F  K  F  *  C  *  G  I  L  F  S  I  F  A  F  I  F  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117237" stop="117193"/>
                    <exon start="117111" stop="117009"/>
                    <exon start="115686" stop="115494"/>
                    <exon start="114814" stop="114772"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEDVRWLCSLTESELDLLIGLKVLIQQRAKKIGHKSLANKFDLKTLRALSFVLMENLKGKLRDLSGTPDTAEFSSTLDACNLLNYVRDKTFANMGVEQLSSYICNDKRKRILEMFSEDMAPNRKQRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="141699" PGL_stop="143477"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141699" e_stop="143477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="141699" e_stop="143477" e_length="1779"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141699" stop="143477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTGTTTTTTTCCATTTTTTTTCATTTTTCATGTGTTTGGTATGCCGGAAATTGATGTATTAGTTGCCGGAGTTTGAGAAAAGAAGTCCCTTTTCCCCTTTTTGTGTAATTTCATGTATTGGGTTTGTTGGGTGTTGACGGATTTGTTGCCGGAGTTTGAGAGAAGAAAACTCCCTTATCCCCTTTTTTTTTTTTTTTTTACTTGTTGGGTTTGCCGGGAATTGACGTATTGGTTGCCGGAGATTGAGAAAAGAACTCCCTTTTCCCCTTTTGTAATTTCATTTGTTGGGTTAGCTGGGCGTTGACGTATTAGTTGCCGGAGTTTGAGAGAAGAAAACTCATTTATCCCCTGTTTTTCCATTTTTTTACTTGTGGGGTTCGCCGGGAATTGACGTATTGGTTGCCGGAGTTCGAGGAAAAGCACCCCTTTTTTTTTATCTGATTCAGTTATTGGGTTTGCAGGGGATTGCGTGTTAGTTGCCGGAGTTCGAGAAAAAAAAACACCCTTTTTCAGCTGATTCAGTTATTGGTTTTGCCGGGGATTGCACGTTAGTAGCCGGAGTTCGAGAAAAAACTCCCTTTTTCAGCTGATTCAGTTATTGGGTTTGGAAGGGATTGTGTGTTAGTTGCCGGAGTTCGAGAAAAAACTCCCTTTTTCAGCTGATTCAGTTATTGGTTTTGCCGGGGATTGCGTGTTAGTTGCCGGAGTTTGGGTGTATTCAGCTTCCTACCATATCTCACTTGTTTGGTTCACTGGAAATTGACGTGGTATTCGCCGGAGCAATGGTGGAAGGCGGTGCAGGACCAGAGTTTTCGGTGGTATTTTACGACGGAGAAAGAGAGATGAACATCGGAAGTATACGCATATACCCTTTACTAGAATTCAAAGCATTTCAATTGATGTTAAGCCAAAGAATCGGAATCTCACCAAATCAGATTTCAATTTACTTGTGTGATCGGAAAACCTCAAAGTTGGAAGATCGACGACGAATCCCCATCACCGGTAAAGCTAATTTCAGTTTAATTGCTCGTGAAATAGACTGTTTCTTTCTCGTGGTTCTAAAACGGTCGCGAAAATCACGTAATCGTAAGATTATAAAACCCGGTGGTGGATTCGTTACGGAGAATGAATCGTTCTCCTCCGTAAAGCCACCGCCACCGGGTAATCCCATTCTCCTCCGACGAACCCACCCGAATCAATTCGGGTCACCGTTTTTCGATCAAATTTCACCGTTAGAACTCGAAAATTTGAACGAGAAGTTGCAGAGTTTGAAGATTCAGAGAGAAGAATACAATTACTCCATGGGTGTATCCTCAATTCCGATGCATCGGAATAATCCATTTCCGAGGATACAAGATACGTTTCCGGTGAAGATGAAAGCTAAATGTGAGCAATGCAGAAAGGGTAATAATGGAAATGAAGAAATACCCAGTTTTCATCACTGCAAGAATGATCCGGTGATCGTCGGAGTTTACCGGAGCCGGTTTGGACCGGTGTCACCGGCCGGTTTTTGTTAGTTTACCGGCGGTTTAATTGCACACGGTTTTTTTTTTGGAGCAGAAGAGAAGGAATCTGCTGCATTTGTGGTATATGGTAAGGAAGATGTACCATAATATTAGTTTATAATTAGGGAAGTGATTAAGGAAATTGGATTAGTTTGCCACTAAATAAGTTTTTTTTTTGTTAAATATAAAATAGATTATTCACTATATTGGTTTCTTTTGGGAGTTTGATGAAATGTAATATGGAGAATTTTTCCATGAATTGAATTTTTCAT</gDNA_template>
            <first_frame> L  C  F  F  P  F  F  F  I  F  H  V  F  G  M  P  E  I  D  V  L  V  A  G  V  *  E  K  K  S  L  F  P  F  L  C  N  F  M  Y  W  V  C  W  V  L  T  D  L  L  P  E  F  E  R  R  K  L  P  Y  P  L  F  F  F  F  F  T  C  W  V  C  R  E  L  T  Y  W  L  P  E  I  E  K  R  T  P  F  S  P  F  V  I  S  F  V  G  L  A  G  R  *  R  I  S  C  R  S  L  R  E  E  N  S  F  I  P  C  F  S  I  F  L  L  V  G  F  A  G  N  *  R  I  G  C  R  S  S  R  K  S  T  P  F  F  L  S  D  S  V  I  G  F  A  G  D  C  V  L  V  A  G  V  R  E  K  K  T  P  F  F  S  *  F  S  Y  W  F  C  R  G  L  H  V  S  S  R  S  S  R  K  N  S  L  F  Q  L  I  Q  L  L  G  L  E  G  I  V  C  *  L  P  E  F  E  K  K  L  P  F  S  A  D  S  V  I  G  F  A  G  D  C  V  L  V  A  G  V  W  V  Y  S  A  S  Y  H  I  S  L  V  W  F  T  G  N  *  R  G  I  R  R  S  N  G  G  R  R  C  R  T  R  V  F  G  G  I  L  R  R  R  K  R  D  E  H  R  K  Y  T  H  I  P  F  T  R  I  Q  S  I  S  I  D  V  K  P  K  N  R  N  L  T  K  S  D  F  N  L  L  V  *  S  E  N  L  K  V  G  R  S  T  T  N  P  H  H  R  *  S  *  F  Q  F  N  C  S  *  N  R  L  F  L  S  R  G  S  K  T  V  A  K  I  T  *  S  *  D  Y  K  T  R  W  W  I  R  Y  G  E  *  I  V  L  L  R  K  A  T  A  T  G  *  S  H  S  P  P  T  N  P  P  E  S  I  R  V  T  V  F  R  S  N  F  T  V  R  T  R  K  F  E  R  E  V  A  E  F  E  D  S  E  R  R  I  Q  L  L  H  G  C  I  L  N  S  D  A  S  E  *  S  I  S  E  D  T  R  Y  V  S  G  E  D  E  S  *  M  *  A  M  Q  K  G  *  *  W  K  *  R  N  T  Q  F  S  S  L  Q  E  *  S  G  D  R  R  S  L  P  E  P  V  W  T  G  V  T  G  R  F  L  L  V  Y  R  R  F  N  C  T  R  F  F  F  W  S  R  R  E  G  I  C  C  I  C  G  I  W  *  G  R  C  T  I  I  L  V  Y  N  *  G  S  D  *  G  N  W  I  S  L  P  L  N  K  F  F  F  C  *  I  *  N  R  L  F  T  I  L  V  S  F  G  S  L  M  K  C  N  M  E  N  F  S  M  N  *  I  F  H </first_frame>
            <second_frame>  S  V  F  F  H  F  F  S  F  F  M  C  L  V  C  R  K  L  M  Y  *  L  P  E  F  E  K  R  S  P  F  S  P  F  C  V  I  S  C  I  G  F  V  G  C  *  R  I  C  C  R  S  L  R  E  E  N  S  L  I  P  F  F  F  F  F  L  L  V  G  F  A  G  N  *  R  I  G  C  R  R  L  R  K  E  L  P  F  P  L  L  *  F  H  L  L  G  *  L  G  V  D  V  L  V  A  G  V  *  E  K  K  T  H  L  S  P  V  F  P  F  F  Y  L  W  G  S  P  G  I  D  V  L  V  A  G  V  R  G  K  A  P  L  F  F  Y  L  I  Q  L  L  G  L  Q  G  I  A  C  *  L  P  E  F  E  K  K  K  H  P  F  S  A  D  S  V  I  G  F  A  G  D  C  T  L  V  A  G  V  R  E  K  T  P  F  F  S  *  F  S  Y  W  V  W  K  G  L  C  V  S  C  R  S  S  R  K  N  S  L  F  Q  L  I  Q  L  L  V  L  P  G  I  A  C  *  L  P  E  F  G  C  I  Q  L  P  T  I  S  H  L  F  G  S  L  E  I  D  V  V  F  A  G  A  M  V  E  G  G  A  G  P  E  F  S  V  V  F  Y  D  G  E  R  E  M  N  I  G  S  I  R  I  Y  P  L  L  E  F  K  A  F  Q  L  M  L  S  Q  R  I  G  I  S  P  N  Q  I  S  I  Y  L  C  D  R  K  T  S  K  L  E  D  R  R  R  I  P  I  T  G  K  A  N  F  S  L  I  A  R  E  I  D  C  F  F  L  V  V  L  K  R  S  R  K  S  R  N  R  K  I  I  K  P  G  G  G  F  V  T  E  N  E  S  F  S  S  V  K  P  P  P  P  G  N  P  I  L  L  R  R  T  H  P  N  Q  F  G  S  P  F  F  D  Q  I  S  P  L  E  L  E  N  L  N  E  K  L  Q  S  L  K  I  Q  R  E  E  Y  N  Y  S  M  G  V  S  S  I  P  M  H  R  N  N  P  F  P  R  I  Q  D  T  F  P  V  K  M  K  A  K  C  E  Q  C  R  K  G  N  N  G  N  E  E  I  P  S  F  H  H  C  K  N  D  P  V  I  V  G  V  Y  R  S  R  F  G  P  V  S  P  A  G  F  C  *  F  T  G  G  L  I  A  H  G  F  F  F  G  A  E  E  K  E  S  A  A  F  V  V  Y  G  K  E  D  V  P  *  Y  *  F  I  I  R  E  V  I  K  E  I  G  L  V  C  H  *  I  S  F  F  F  V  K  Y  K  I  D  Y  S  L  Y  W  F  L  L  G  V  *  *  N  V  I  W  R  I  F  P  *  I  E  F  F   </second_frame>
            <third_frame>   L  F  F  S  I  F  F  H  F  S  C  V  W  Y  A  G  N  *  C  I  S  C  R  S  L  R  K  E  V  P  F  P  L  F  V  *  F  H  V  L  G  L  L  G  V  D  G  F  V  A  G  V  *  E  K  K  T  P  L  S  P  F  F  F  F  F  Y  L  L  G  L  P  G  I  D  V  L  V  A  G  D  *  E  K  N  S  L  F  P  F  C  N  F  I  C  W  V  S  W  A  L  T  Y  *  L  P  E  F  E  R  R  K  L  I  Y  P  L  F  F  H  F  F  T  C  G  V  R  R  E  L  T  Y  W  L  P  E  F  E  E  K  H  P  F  F  F  I  *  F  S  Y  W  V  C  R  G  L  R  V  S  C  R  S  S  R  K  K  N  T  L  F  Q  L  I  Q  L  L  V  L  P  G  I  A  R  *  *  P  E  F  E  K  K  L  P  F  S  A  D  S  V  I  G  F  G  R  D  C  V  L  V  A  G  V  R  E  K  T  P  F  F  S  *  F  S  Y  W  F  C  R  G  L  R  V  S  C  R  S  L  G  V  F  S  F  L  P  Y  L  T  C  L  V  H  W  K  L  T  W  Y  S  P  E  Q  W  W  K  A  V  Q  D  Q  S  F  R  W  Y  F  T  T  E  K  E  R  *  T  S  E  V  Y  A  Y  T  L  Y  *  N  S  K  H  F  N  *  C  *  A  K  E  S  E  S  H  Q  I  R  F  Q  F  T  C  V  I  G  K  P  Q  S  W  K  I  D  D  E  S  P  S  P  V  K  L  I  S  V  *  L  L  V  K  *  T  V  S  F  S  W  F  *  N  G  R  E  N  H  V  I  V  R  L  *  N  P  V  V  D  S  L  R  R  M  N  R  S  P  P  *  S  H  R  H  R  V  I  P  F  S  S  D  E  P  T  R  I  N  S  G  H  R  F  S  I  K  F  H  R  *  N  S  K  I  *  T  R  S  C  R  V  *  R  F  R  E  K  N  T  I  T  P  W  V  Y  P  Q  F  R  C  I  G  I  I  H  F  R  G  Y  K  I  R  F  R  *  R  *  K  L  N  V  S  N  A  E  R  V  I  M  E  M  K  K  Y  P  V  F  I  T  A  R  M  I  R  *  S  S  E  F  T  G  A  G  L  D  R  C  H  R  P  V  F  V  S  L  P  A  V  *  L  H  T  V  F  F  L  E  Q  K  R  R  N  L  L  H  L  W  Y  M  V  R  K  M  Y  H  N  I  S  L  *  L  G  K  *  L  R  K  L  D  *  F  A  T  K  *  V  F  F  L  L  N  I  K  *  I  I  H  Y  I  G  F  F  W  E  F  D  E  M  *  Y  G  E  F  F  H  E  L  N  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142399" stop="143217"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPEFGCIQLPTISHLFGSLEIDVVFAGAMVEGGAGPEFSVVFYDGEREMNIGSIRIYPLLEFKAFQLMLSQRIGISPNQISIYLCDRKTSKLEDRRRIPITGKANFSLIAREIDCFFLVVLKRSRKSRNRKIIKPGGGFVTENESFSSVKPPPPGNPILLRRTHPNQFGSPFFDQISPLELENLNEKLQSLKIQREEYNYSMGVSSIPMHRNNPFPRIQDTFPVKMKAKCEQCRKGNNGNEEIPSFHHCKNDPVIVGVYRSRFGPVSPAGFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141777" stop="142004"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKSLFPFLCNFMYWVCWVLTDLLPEFERRKLPYPLFFFFFTCWVCRELTYWLPEIEKRTPFSPFVISFVGLAGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="+" PGL_start="146760" PGL_stop="150191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146760" e_stop="147000"/>
            <exon e_start="147452" e_stop="147580"/>
            <exon e_start="147661" e_stop="147910"/>
            <exon e_start="149967" e_stop="150191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146760" e_stop="147000" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="147001" i_stop="147451" i_length="451"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="147452" e_stop="147580" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="147581" i_stop="147660" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="147661" e_stop="147910" e_length="250"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="147911" i_stop="149966" i_length="2056"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="149967" e_stop="150191" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146760" stop="147000"/>
              <exon start="147452" stop="147580"/>
              <exon start="147661" stop="147910"/>
              <exon start="149967" stop="150191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574402" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGGAGAATTCTTCTTCGGAAAATCTTGACGATGGAGAGTTATGGCTACCTTCTGATATTTTTCCAGTAGAAGAAACTGTTTCTTCTGCTAATAATAAGCTCAAAAACAACAACCCCATTGCTTCTTCTCTTTGCTGTTGTTACTCTTGTGTTCTTCTTCTTCGTCATCCTCATAACTCCATTTTCATGGCTGAACAACAAGTTCTACAGAGTGTTCCAAAGCCATTTCCCATAACTGAG : CGGCGGTTCAGACCGGCTGAGAGGTGTTGCACCTGTACAGATTGTTCAATTTCAGACTATTTTGAACGGAGTAGAAGAGAAACAACCGGTCCACCACCGGTTTATCCACCGGTTCAACTTCACCACCAG : GTTGAGAGTTTGATGGAAGTTAGAGCTCCATTTTTACAGAAGGAAGAACAGAGCCGGTTCATCGGGATTCAGAGAAGAAACCTCGGCCTGAACCGGTTCGCCGGTAACTGGGTTTCGCCGTTTGTGGGTTTCGGTGGCAATGGCTGTGGTTTTAATGGTGAAAGTAGTTCTGTGAGAGATTATGGTGGAACTGGTGTCTTCCTCCCTAGAATACCTAGCAACATCAACAACAATGGTGGAAAGAAACAAG : GTGGTAGAAATAGGCAAGATGTTCAACAAACTGATCAAAGATATCCATGCATATGAGAAATGGCAAAAACCTAAAGAATTGGACCTAATGGATATATAGTAATTTGGTCATTAGATATAGTAATTTGGTAGATTTAAATAATTGAACTTAGCATATGGGTTATGTGTGTAATTTTTATCTAATTGTCAATTGCCTTTTTGAGGGAAAATGGTGATATATTTTGGC</gDNA_template>
            <first_frame> N  G  E  F  F  F  G  K  S  *  R  W  R  V  M  A  T  F  *  Y  F  S  S  R  R  N  C  F  F  C  *  *  *  A  Q  K  Q  Q  P  H  C  F  F  S  L  L  L  L  L  L  C  S  S  S  S  S  S  S  *  L  H  F  H  G  *  T  T  S  S  T  E  C  S  K  A  I  S  H  N  *   : A  A  V  Q  T  G  *  E  V  L  H  L  Y  R  L  F  N  F  R  L  F  *  T  E  *  K  R  N  N  R  S  T  T  G  L  S  T  G  S  T  S  P  P   : G  *  E  F  D  G  S  *  S  S  I  F  T  E  G  R  T  E  P  V  H  R  D  S  E  K  K  P  R  P  E  P  V  R  R  *  L  G  F  A  V  C  G  F  R  W  Q  W  L  W  F  *  W  *  K  *  F  C  E  R  L  W  W  N  W  C  L  P  P  *  N  T  *  Q  H  Q  Q  Q  W  W  K  E  T  R :   W  *  K  *  A  R  C  S  T  N  *  S  K  I  S  M  H  M  R  N  G  K  N  L  K  N  W  T  *  W  I  Y  S  N  L  V  I  R  Y  S  N  L  V  D  L  N  N  *  T  *  H  M  G  Y  V  C  N  F  Y  L  I  V  N  C  L  F  E  G  K  W  *  Y  I  L   </first_frame>
            <second_frame>  M  E  N  S  S  S  E  N  L  D  D  G  E  L  W  L  P  S  D  I  F  P  V  E  E  T  V  S  S  A  N  N  K  L  K  N  N  N  P  I  A  S  S  L  C  C  C  Y  S  C  V  L  L  L  R  H  P  H  N  S  I  F  M  A  E  Q  Q  V  L  Q  S  V  P  K  P  F  P  I  T  E  :  R  R  F  R  P  A  E  R  C  C  T  C  T  D  C  S  I  S  D  Y  F  E  R  S  R  R  E  T  T  G  P  P  P  V  Y  P  P  V  Q  L  H  H  Q  :  V  E  S  L  M  E  V  R  A  P  F  L  Q  K  E  E  Q  S  R  F  I  G  I  Q  R  R  N  L  G  L  N  R  F  A  G  N  W  V  S  P  F  V  G  F  G  G  N  G  C  G  F  N  G  E  S  S  S  V  R  D  Y  G  G  T  G  V  F  L  P  R  I  P  S  N  I  N  N  N  G  G  K  K  Q   : G  G  R  N  R  Q  D  V  Q  Q  T  D  Q  R  Y  P  C  I  *  E  M  A  K  T  *  R  I  G  P  N  G  Y  I  V  I  W  S  L  D  I  V  I  W  *  I  *  I  I  E  L  S  I  W  V  M  C  V  I  F  I  *  L  S  I  A  F  L  R  E  N  G  D  I  F  W  </second_frame>
            <third_frame>   W  R  I  L  L  R  K  I  L  T  M  E  S  Y  G  Y  L  L  I  F  F  Q  *  K  K  L  F  L  L  L  I  I  S  S  K  T  T  T  P  L  L  L  L  F  A  V  V  T  L  V  F  F  F  F  V  I  L  I  T  P  F  S  W  L  N  N  K  F  Y  R  V  F  Q  S  H  F  P  *  L  S :   G  G  S  D  R  L  R  G  V  A  P  V  Q  I  V  Q  F  Q  T  I  L  N  G  V  E  E  K  Q  P  V  H  H  R  F  I  H  R  F  N  F  T  T  R :   L  R  V  *  W  K  L  E  L  H  F  Y  R  R  K  N  R  A  G  S  S  G  F  R  E  E  T  S  A  *  T  G  S  P  V  T  G  F  R  R  L  W  V  S  V  A  M  A  V  V  L  M  V  K  V  V  L  *  E  I  M  V  E  L  V  S  S  S  L  E  Y  L  A  T  S  T  T  M  V  E  R  N  K  :  V  V  E  I  G  K  M  F  N  K  L  I  K  D  I  H  A  Y  E  K  W  Q  K  P  K  E  L  D  L  M  D  I  *  *  F  G  H  *  I  *  *  F  G  R  F  K  *  L  N  L  A  Y  G  L  C  V  *  F  L  S  N  C  Q  L  P  F  *  G  K  M  V  I  Y  F  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146761" stop="147000"/>
                    <exon start="147452" stop="147580"/>
                    <exon start="147661" stop="147910"/>
                    <exon start="149967" stop="150022"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MENSSSENLDDGELWLPSDIFPVEETVSSANNKLKNNNPIASSLCCCYSCVLLLRHPHNSIFMAEQQVLQSVPKPFPITERRFRPAERCCTCTDCSISDYFERSRRETTGPPPVYPPVQLHHQVESLMEVRAPFLQKEEQSRFIGIQRRNLGLNRFAGNWVSPFVGFGGNGCGFNGESSSVRDYGGTGVFLPRIPSNINNNGGKKQGGRNRQDVQQTDQRYPCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="+" PGL_start="151674" PGL_stop="152073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151674" e_stop="152073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="151674" e_stop="152073" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151674" stop="152073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602838" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATATTTCTCATCAACAAACAATTCCTTCATCATATGACAATTCTAGTTTTATCATGCCTAGTACTTACTATAATTACCCTAACAATAACAATCATAATAATAATTCATATAGTGTGAATTATTCCCAAAAATATTTACCATTGCAAGATCAAATTGGTACCAACATCAACAATAATTCAACGTCGTTCGGTCGTTATTTAACGACCATGATGTTAATTCTAGTCATGTCTATGATCATGTTCAGTGTAATCATATGGATGTTATTTGGAAAAGAAAGGCCTCAGTTTCAAATCATGTCATTACAAGTCCCAACAGGACTCATGATCACAAGTACATCAATGTTAGGTAATTGGCAAGTTAATGTATCAATGAAGAATCCAAATAATGAGCTAGCTATA</gDNA_template>
            <first_frame> I  Y  F  S  S  T  N  N  S  F  I  I  *  Q  F  *  F  Y  H  A  *  Y  L  L  *  L  P  *  Q  *  Q  S  *  *  *  F  I  *  C  E  L  F  P  K  I  F  T  I  A  R  S  N  W  Y  Q  H  Q  Q  *  F  N  V  V  R  S  L  F  N  D  H  D  V  N  S  S  H  V  Y  D  H  V  Q  C  N  H  M  D  V  I  W  K  R  K  A  S  V  S  N  H  V  I  T  S  P  N  R  T  H  D  H  K  Y  I  N  V  R  *  L  A  S  *  C  I  N  E  E  S  K  *  *  A  S  Y  </first_frame>
            <second_frame>  Y  I  S  H  Q  Q  T  I  P  S  S  Y  D  N  S  S  F  I  M  P  S  T  Y  Y  N  Y  P  N  N  N  N  H  N  N  N  S  Y  S  V  N  Y  S  Q  K  Y  L  P  L  Q  D  Q  I  G  T  N  I  N  N  N  S  T  S  F  G  R  Y  L  T  T  M  M  L  I  L  V  M  S  M  I  M  F  S  V  I  I  W  M  L  F  G  K  E  R  P  Q  F  Q  I  M  S  L  Q  V  P  T  G  L  M  I  T  S  T  S  M  L  G  N  W  Q  V  N  V  S  M  K  N  P  N  N  E  L  A  I </second_frame>
            <third_frame>   I  F  L  I  N  K  Q  F  L  H  H  M  T  I  L  V  L  S  C  L  V  L  T  I  I  T  L  T  I  T  I  I  I  I  I  H  I  V  *  I  I  P  K  N  I  Y  H  C  K  I  K  L  V  P  T  S  T  I  I  Q  R  R  S  V  V  I  *  R  P  *  C  *  F  *  S  C  L  *  S  C  S  V  *  S  Y  G  C  Y  L  E  K  K  G  L  S  F  K  S  C  H  Y  K  S  Q  Q  D  S  *  S  Q  V  H  Q  C  *  V  I  G  K  L  M  Y  Q  *  R  I  Q  I  M  S  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="29" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="151675" stop="152073"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YISHQQTIPSSYDNSSFIMPSTYYNYPNNNNHNNNSYSVNYSQKYLPLQDQIGTNINNNSTSFGRYLTTMMLILVMSMIMFSVIIWMLFGKERPQFQIMSLQVPTGLMITSTSMLGNWQVNVSMKNPNNELAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="30" PGL_strand="+" PGL_start="153854" PGL_stop="154832"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="153854" e_stop="154832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="153854" e_stop="154832" e_length="979"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153854" stop="154832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTCTTCTATAATTTTTCTTAATAGAATAGATTAGAAGAATTCATAGGGGATTTAGTAAGAAAAAAATTAAATTAATGGAAAAGGAAGAAGATAAACCAGTTTTGGGATATCAAAAATCAGAATATTCTTATCAAACAAATCCTCAATTTTACCAATCAGACCCTCAATTTTATCAATATTACGAATATAATTACCCTGCAAGGCCACTACCTTATGTCTCCCCTGATGTAGATCAGGGGTTCTCATTTGGTAGAGTCATGCTTTGCCTAGTGGTATTTTTATTTTTATTTGCGATGATTATAAGTATGTTAACTATGATGATATTTATGACAATGAAACCTACATTTAATTTGGAATCGTTCGAGGTCCGCGCATTCAACTTATCAGGAAATGGCGGACCTGGAACGACGTTGAAAGCTAGTTGGGAGACGAAAGTATCGGTTAAAAATACAAACACTAGGTCATCAATACTTTTGAATCAAGTTGAAACATCGTTGGTGTATAGATATGTTGAACTAGACGTGTCTAACGTGGACCATATCGAGATTCAGAAGGATAGTAACGTTCAGATACTGGATGTGTTCTCTTTTCCTAGCTCGAAACGAACCTTTAACACGGAATCTGTGGTGAAAGAAATGGTTAATGATAGACAAAGAGGGCAAATTATGTTTGATTTGAAACTTGAGGTACTACTTATGGTTAAGTCTAATGTTTTTCATAAATCAGAGAAAATGCGTTTGTTTTGCGAAAGAATTACATTAGATTTTAAGAATAGTACTTCTAATATTCCAACATGGAATGGTAATAAACAAGAATGTGCATCAAGTTTTTGATTTTTTGATGTAATTATACTGTAAGAAAATAAATTTTATTATGTAGGTAAGAAATTAAGTTGAAGTTCGAATGTTTTATTATGTTATGTTTTCTTGTGCAAACCATTAACTCATGATAAAATGTCGTGTTTGTGTTATCTTTT</gDNA_template>
            <first_frame> M  F  F  Y  N  F  S  *  *  N  R  L  E  E  F  I  G  D  L  V  R  K  K  L  N  *  W  K  R  K  K  I  N  Q  F  W  D  I  K  N  Q  N  I  L  I  K  Q  I  L  N  F  T  N  Q  T  L  N  F  I  N  I  T  N  I  I  T  L  Q  G  H  Y  L  M  S  P  L  M  *  I  R  G  S  H  L  V  E  S  C  F  A  *  W  Y  F  Y  F  Y  L  R  *  L  *  V  C  *  L  *  *  Y  L  *  Q  *  N  L  H  L  I  W  N  R  S  R  S  A  H  S  T  Y  Q  E  M  A  D  L  E  R  R  *  K  L  V  G  R  R  K  Y  R  L  K  I  Q  T  L  G  H  Q  Y  F  *  I  K  L  K  H  R  W  C  I  D  M  L  N  *  T  C  L  T  W  T  I  S  R  F  R  R  I  V  T  F  R  Y  W  M  C  S  L  F  L  A  R  N  E  P  L  T  R  N  L  W  *  K  K  W  L  M  I  D  K  E  G  K  L  C  L  I  *  N  L  R  Y  Y  L  W  L  S  L  M  F  F  I  N  Q  R  K  C  V  C  F  A  K  E  L  H  *  I  L  R  I  V  L  L  I  F  Q  H  G  M  V  I  N  K  N  V  H  Q  V  F  D  F  L  M  *  L  Y  C  K  K  I  N  F  I  M  *  V  R  N  *  V  E  V  R  M  F  Y  Y  V  M  F  S  C  A  N  H  *  L  M  I  K  C  R  V  C  V  I  F  </first_frame>
            <second_frame>  C  S  S  I  I  F  L  N  R  I  D  *  K  N  S  *  G  I  *  *  E  K  N  *  I  N  G  K  G  R  R  *  T  S  F  G  I  S  K  I  R  I  F  L  S  N  K  S  S  I  L  P  I  R  P  S  I  L  S  I  L  R  I  *  L  P  C  K  A  T  T  L  C  L  P  *  C  R  S  G  V  L  I  W  *  S  H  A  L  P  S  G  I  F  I  F  I  C  D  D  Y  K  Y  V  N  Y  D  D  I  Y  D  N  E  T  Y  I  *  F  G  I  V  R  G  P  R  I  Q  L  I  R  K  W  R  T  W  N  D  V  E  S  *  L  G  D  E  S  I  G  *  K  Y  K  H  *  V  I  N  T  F  E  S  S  *  N  I  V  G  V  *  I  C  *  T  R  R  V  *  R  G  P  Y  R  D  S  E  G  *  *  R  S  D  T  G  C  V  L  F  S  *  L  E  T  N  L  *  H  G  I  C  G  E  R  N  G  *  *  *  T  K  R  A  N  Y  V  *  F  E  T  *  G  T  T  Y  G  *  V  *  C  F  S  *  I  R  E  N  A  F  V  L  R  K  N  Y  I  R  F  *  E  *  Y  F  *  Y  S  N  M  E  W  *  *  T  R  M  C  I  K  F  L  I  F  *  C  N  Y  T  V  R  K  *  I  L  L  C  R  *  E  I  K  L  K  F  E  C  F  I  M  L  C  F  L  V  Q  T  I  N  S  *  *  N  V  V  F  V  L  S  F </second_frame>
            <third_frame>   V  L  L  *  F  F  L  I  E  *  I  R  R  I  H  R  G  F  S  K  K  K  I  K  L  M  E  K  E  E  D  K  P  V  L  G  Y  Q  K  S  E  Y  S  Y  Q  T  N  P  Q  F  Y  Q  S  D  P  Q  F  Y  Q  Y  Y  E  Y  N  Y  P  A  R  P  L  P  Y  V  S  P  D  V  D  Q  G  F  S  F  G  R  V  M  L  C  L  V  V  F  L  F  L  F  A  M  I  I  S  M  L  T  M  M  I  F  M  T  M  K  P  T  F  N  L  E  S  F  E  V  R  A  F  N  L  S  G  N  G  G  P  G  T  T  L  K  A  S  W  E  T  K  V  S  V  K  N  T  N  T  R  S  S  I  L  L  N  Q  V  E  T  S  L  V  Y  R  Y  V  E  L  D  V  S  N  V  D  H  I  E  I  Q  K  D  S  N  V  Q  I  L  D  V  F  S  F  P  S  S  K  R  T  F  N  T  E  S  V  V  K  E  M  V  N  D  R  Q  R  G  Q  I  M  F  D  L  K  L  E  V  L  L  M  V  K  S  N  V  F  H  K  S  E  K  M  R  L  F  C  E  R  I  T  L  D  F  K  N  S  T  S  N  I  P  T  W  N  G  N  K  Q  E  C  A  S  S  F  *  F  F  D  V  I  I  L  *  E  N  K  F  Y  Y  V  G  K  K  L  S  *  S  S  N  V  L  L  C  Y  V  F  L  C  K  P  L  T  H  D  K  M  S  C  L  C  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="30" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="153886" stop="154689"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRRIHRGFSKKKIKLMEKEEDKPVLGYQKSEYSYQTNPQFYQSDPQFYQYYEYNYPARPLPYVSPDVDQGFSFGRVMLCLVVFLFLFAMIISMLTMMIFMTMKPTFNLESFEVRAFNLSGNGGPGTTLKASWETKVSVKNTNTRSSILLNQVETSLVYRYVELDVSNVDHIEIQKDSNVQILDVFSFPSSKRTFNTESVVKEMVNDRQRGQIMFDLKLEVLLMVKSNVFHKSEKMRLFCERITLDFKNSTSNIPTWNGNKQECASSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 116 chains have been computed
$ 
$ memory statistics:
$ 355864 bytes spliced alignments in total
$ 45 spliced alignments have been stored
$ 7908 bytes was the average size of a spliced alignment
$ 42056 bytes predicted gene locations in total
$ 30 predicted gene locations have been stored
$ 1401 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 138 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:11:22
-->
