<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:52:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373727" ref_strand="+" ref_description="SGN-E373727 [TUS-33-O20](-)">
      <seq>aatcacgtattacacgcaaataccccaggtgtatcaaggccataaggatgttaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcagaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttggtgatcggcccggttacggaggggttatggttggaaataacgccgttaagtatcaactagcccgggattgctccgtcagtgtttgaaataacgaccgtcaagtttgtcttgatcaattctcttttcttatttaaaataaatgttttgttcctttatagttgatgaaattgtatatttttcttataaaaaaatatttaaaattgggaagggaaaaaaatggggaattcataatcttgttattacaggttataatttattatatatcattatattattgttttttttttataacaataatatatttaatgcgatctcagtagtatgttaatcttatttctatatttttatagaataataaaactgttttttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9200" stop="7977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8900" g_stop="8273" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E373727" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8900" e_stop="8273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTATAAAAAAATATTTAAAATTGGGAAGGGAAAAAAATGGGGAATTCATAATCTTGTTATTACAGGTTATAATTTATTATATATCATTATATTATTGTTTTTTTTTTATAACAATAATATATTTAATGCGATCTCAGTAGTATGTTAATCTTATTTCTATATTTTTATAGAATAATAAAACTGTTTTTTATAGATACTCA</genome_strand>
        <mrna_strand>AATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTATAAAAAAATATTTAAAATTGGGAAGGGAAAAAAATGGGGAATTCATAATCTTGTTATTACAGGTTATAATTTATTATATATCATTATATTATTGTTTTTTTTTTATAACAATAATATATTTAATGCGATCTCAGTAGTATGTTAATCTTATTTCTATATTTTTATAGAATAATAAAACTGTTTTTTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717521" ref_strand="+" ref_description="SGN-E717521 [FC02AA01]">
      <seq>gatttctcctacacaaaccactctcaaacaacttttttttctctcctccctccgccatcacaactatcaccaccaccatcaccgacatgtcggataaaaagtgtagccaccacaagagcaagaagaaaaagctaattcgacgtatttttgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgtacttcaccccaaaaaacctcgtttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatatgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcagataccccaggtgtatcaaggccataaggatgtgaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcagaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttggtgatcggcccggttacggaggggttatggttggaaataacgccgttaagtatcaactagcccgggattgctccgtcagtgtttgaaataacgaccgtcaagtttgtctcgatcaattctcttttcttatttaaaataaatgttttgttcctttatagttgatgaaattgtatatttttcttttaaaaaaatatttaaaattgggaagggaaaaaaatggggaattcataatcttgttattacaggttataatttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9576" stop="8095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9263" g_stop="8395" g_length="869"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="894" r_length="869" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E717521" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9263" e_stop="8395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACTTTTTTTTCTCTCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTATAAAAAAATATTTAAAATTGGGAAGGGAAAAAAATGGGGAATTCATAATCTTGTTATTACAGGTTATAATTTATT</genome_strand>
        <mrna_strand>AAACAACTTTTTTTTCTCTCCTCCCTCCGCCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTTTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATATGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAGATACCCCAGGTGTATCAAGGCCATAAGGATGTGAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTCGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTTTAAAAAAATATTTAAAATTGGGAAGGGAAAAAAATGGGGAATTCATAATCTTGTTATTACAGGTTATAATTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722540" ref_strand="+" ref_description="SGN-E722540 [FC17CC10]">
      <seq>aatcggccgaattgctcccttctcatttctcctacacaaaccactctcaaacaacttttttttctctcctccctccgccatcacaactatcaccaccaccatcaccgacatgtcggataaaaagtgtagccaccacaagagcaagaagaaaaagctaattcgacgtatttttgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgtacttcaccccaaaaaacctcgtttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatatgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcagataccccaggtgtatcaaggccataaggatgtgaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcagaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttggtgatcggcccggttacggaggggttatggttggaaataacgccgttaagtatcaactagcccgggattgctccgtcagtgtttgaaataacgaccgtcaagtttgtctcgatcaattctcttttcttatttaaaataaatgttttgttcctttatagttgatgaaattgtatatttttcttttaaaaaatatttaaaattgggaagggaaaaaaaaatggggaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9586" stop="8136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9263" g_stop="8425" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="888" r_length="840" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E722540" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9263" e_stop="8425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACTTTTTTTTCTCTCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTATAAAAAAATATTTAAAATTGGGAAGGG--AAAAAAATGGGGAATTCA</genome_strand>
        <mrna_strand>AAACAACTTTTTTTTCTCTCCTCCCTCCGCCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTTTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATATGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAGATACCCCAGGTGTATCAAGGCCATAAGGATGTGAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTCGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTT-TTAAAAAATATTTAAAATTGGGAAGGGAAAAAAAAATGGGGAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719733" ref_strand="+" ref_description="SGN-E719733 [FC08CH11]">
      <seq>aatcggccgaattgcccttctcatttctcctacacaaaccactctcaaacaacttttttttctctcctccctccgccatcacaactatcaccaccaccatcaccgacatgtcggataaaaagtgtagccaccacaagagcaagaagaaaaagctaattcgacgtatttttgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgtacttcaccccaaaaaacctcgtttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatatgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcagataccccaggtgtatcaaggccataaggatgtgaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcagaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttggtgatcggcccggttacggaggggttatggttggaaataacgccgttaagtatcaactagcccgggattgctccgtcagtgtttgaaataacgaccgtcaagtttgtctcgatcaattctcttttcttatttaaaataaatgttttgttcctttatagttgatgaaattgtatatttttcttttaaaaaaatatttaaaattgggaagggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9584" stop="8138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9263" g_stop="8438" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="872" r_length="826" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E719733" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9263" e_stop="8438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACTTTTTTTTCTCTCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTATAAAAAAATATTTAAAATTGGGAAGGGAAAAA</genome_strand>
        <mrna_strand>AAACAACTTTTTTTTCTCTCCTCCCTCCGCCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTTTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATATGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAGATACCCCAGGTGTATCAAGGCCATAAGGATGTGAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTCGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTTTAAAAAAATATTTAAAATTGGGAAGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555407" ref_strand="+" ref_description="SGN-E555407 [cTSC-2-P11]">
      <seq>aagaaacattttttttctctcctccctcgagcatcacaaatatcaccaccaccatcaccgacgtgtcggataaaaagtggagccacgacaagagcgagaagaaaaagctaattcgacgtacttgtgctggagttcttagtcttcctcttcttagctctatcgtcactatcctcagagaatgggccgaacatcaccccaaaaaacctcatttgcattctcggagactggactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatacgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcaaataccccaggtgtatcaaggccataaggatgttaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcagaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttggtgatcggcccggttacggaggggttatggttggaaataacgccgttaagtatcaactagcccgggattgctccgtcagtgtttgaaataacgaccgtcaagtttgtcttgatcaattctcttttcttatttaaaataaatgttttgttcctttatagttgatgaaattgtatatttttcttataaaaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9565" stop="8158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9266" g_stop="8458" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="811" r_length="811" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E555407" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9266" e_stop="8458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACAACTTTTTTTTCTCTCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTA-TCTTCCTCTTCTTAGCTCT-TC-TCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTT-CATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTATAAAAAAATATT</genome_strand>
        <mrna_strand>AAGAAAC-A-TTTTTTTTCTCTCCTCCCTCGAGCATCACAAATATCACCACCACCATCACCGACGTGTCGGATAAAAAGTGGAGCCACGACAAGAGCGAGAAGAAAAAGCTAATTCGACGTACTTGTGCTGGAGTTCTTAGTCTTCCTCTTCTTAGCTCTATCGTCACTATCCTCAGAGAATGGGCCGAACATCACCCCAAAAAACCTCATTTGCATTCTCGGAGACTGGACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTATAAAAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577938" ref_strand="+" ref_description="SGN-E577938 [LE08BF07]">
      <seq>tttttttttttaaaagaaaaatatacaatttcatcaactataaaggaacaaaacatttattttaaataagaaaagagaattgatcgagacaaacttgacggtcgttatttcaaacactgacggagcaatcccgggctagttgatacttaacggcgttatttccaaccataacccctccgtaaccgggccgatcaccaagtggcacgtaagcagagcacgtgacatgcagatggtaatggcccgttgttatggaccccactttccattttacccgtccatcaatcttaaaatccaaccaaacgccaccgttttgttgatcctctgacaggcccggcccgttatacggagcgatcgggatgttattcccataaacaaacggggaccatatgttcacatccttatggccttgatacacctggggtatctgcgtgtaatacgtgatttgttgattatgatacgtagcgtatacatgcatgctatcataataaattccgattttgctattagggtttcgagcatatattgtggtttggatagaggtcgagaagatgtttggggcggatacgttgaaggtaaagatagttgtgtcttggagaatgaaacgaggttttttggggtgaagtacggcccatactatgaggatagtgagaagagctaagaagaggaagataagaactccagcaaaaatacgtcgaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="8160" stop="9457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8458" g_stop="9157" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E577938" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8458" e_stop="9157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTTTTTATAAGAAAAATATACAATTTCATCAACTATAAAGGAACAAAACATTTATTTTAAATAAGAAAAGAGAATTGATCAAGACAAACTTGACGGTCGTTATTTCAAACACTGACGGAGCAATCCCGGGCTAGTTGATACTTAACGGCGTTATTTCCAACCATAACCCCTCCGTAACCGGGCCGATCACCAAGTGGCACGTAAGCAGAGCACGTGACATGCAGATGGTAATGGCCCGTTGTTATGGACCCCACTTTCCATTTTACCCGTCCATCAATCTTAAAATCCAACCAAACGCCACCGTTTTGTTGATCCTCTGACAGGCCCGGCCCGTTATACGGAGCGATCGGGATGTTATTCCCATAAACAAACGGGGACCATATGTTAACATCCTTATGGCCTTGATACACCTGGGGTATTTGCGTGTAATACGTGATTTGTTGATTATGATACGTAGCGTATACATGCATGCTATCATAATAAATTCCGATTTTGCTATTAGGGTTTCGAGCGTATATTGTGGTTTGGATAGAGGTCGAGAAGATGTTTGGGGCGGATACGTTGAAGGTAAAGATAGTTGTGTCTTGGAGAATGAAACGAGGTTTTTTGGGGTGAAGTACGGCCCATACTATGAGGATAGTGAGAAGAGCTAAGAAGAGGAAGATAAGAACTCCAGCACAAATACGTCGAATTAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTAAAAGAAAAATATACAATTTCATCAACTATAAAGGAACAAAACATTTATTTTAAATAAGAAAAGAGAATTGATCGAGACAAACTTGACGGTCGTTATTTCAAACACTGACGGAGCAATCCCGGGCTAGTTGATACTTAACGGCGTTATTTCCAACCATAACCCCTCCGTAACCGGGCCGATCACCAAGTGGCACGTAAGCAGAGCACGTGACATGCAGATGGTAATGGCCCGTTGTTATGGACCCCACTTTCCATTTTACCCGTCCATCAATCTTAAAATCCAACCAAACGCCACCGTTTTGTTGATCCTCTGACAGGCCCGGCCCGTTATACGGAGCGATCGGGATGTTATTCCCATAAACAAACGGGGACCATATGTTCACATCCTTATGGCCTTGATACACCTGGGGTATCTGCGTGTAATACGTGATTTGTTGATTATGATACGTAGCGTATACATGCATGCTATCATAATAAATTCCGATTTTGCTATTAGGGTTTCGAGCATATATTGTGGTTTGGATAGAGGTCGAGAAGATGTTTGGGGCGGATACGTTGAAGGTAAAGATAGTTGTGTCTTGGAGAATGAAACGAGGTTTTTTGGGGTGAAGTACGGCCCATACTATGAGGATAGTGAGAAGAGCTAAGAAGAGGAAGATAAGAACTCCAGCAAAAATACGTCGAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718408" ref_strand="+" ref_description="SGN-E718408 [FC04CC09]">
      <seq>cggccaaatcggccgaattcccatggggatccgatgatttctcctacacaaaccactctcaaacaacttttttttctctcctccctccgccatcacaactatcaccaccaccatcaccgacatgtcggataaaaagtgtagccaccacaagagcaagaagaaaaagctaattcgacgtatttttgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgtacttcaccccaaaaaacctcgtttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatatgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcagataccccaggtgtatcaaggccataaggatgtgaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcagaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttggtgatcggcccggttacggaggggttatggttggaaataacgccgttaagtatcaactagcccgggattgctccgtcagtgtttgaaataacgaccgtcaagtttgtctcgatcaattctcttttcttatttaaaataaatgttttgttcctttatagttgatgaaattgtatatttttctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9578" stop="8168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9263" g_stop="8468" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="856" r_length="796" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E718408" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9263" e_stop="8468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACTTTTTTTTCTCTCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTATA</genome_strand>
        <mrna_strand>AAACAACTTTTTTTTCTCTCCTCCCTCCGCCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTTTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATATGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAGATACCCCAGGTGTATCAAGGCCATAAGGATGTGAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTCGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717893" ref_strand="+" ref_description="SGN-E717893 [FC03AB12]">
      <seq>gctcccttctcatttctcctaccaaaccactctcaaacaacttttttttctctcctccctccgccatcacaactatcaccaccaccatcaccgacatgtcggataaaaagtgtagccaccacaagagcaagaagaaaaagctaattcgacgtatttttgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgtacttcaccccaaaaaacctcgtttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatatgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcagataccccaggtgtatcaaggccataaggatgtgaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcagaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttggtgatcggcccggttacggaggggttatggttggaaataacgccgttaagtatcaactagcccgggattgctccgtcagtgtttgaaataacgaccgtcaagtttgtctcgatcaattctcttttcttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9586" stop="8221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9263" g_stop="8521" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="777" r_length="743" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E717893" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9263" e_stop="8521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACTTTTTTTTCTCTCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTT</genome_strand>
        <mrna_strand>AAACAACTTTTTTTTCTCTCCTCCCTCCGCCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTTTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATATGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAGATACCCCAGGTGTATCAAGGCCATAAGGATGTGAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTCGATCAATTCTCTTTTCTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690535" ref_strand="+" ref_description="SGN-E690535 [LH_Ea03M05]">
      <seq>cgtttttcttcaaacgctgacggagcaatcccgtgctagttgatacttaacggcgttatttcccaccataacccctccataaccgggcctatcaccaagtggcacgtaagcagagcacgtgacatgtaaatggtaatgacccgttgttatggacccgactttccattttacccgcccatcaatcttgaaatccaaccaaacgccgccgttttgttgatcctctgacaggcccggcccgttatacggggcgattgggatgttattcccataaacaaacggggaccatatgttgacatccttatggccttgatacacctcgggtatttgcgtgtaatacgtgatttgttgattatgatacgtagcgtatacatgcatgctatcgtaataaattccgattttgctattagggtttcgggagtatattgtggtttggatagaggttgagaagatgtttggggcggatacgttgaaggtaaagatagttgtgtcttggagaatgaaacgaggttttttgggatgaagaacggcccatactatgaggatagtgagaagagctaagaagaggaagattagaactccaacacaaatgcgtcgaattagctttttcttcttgctcttgtggtggctacactttttatccgacatgtcggtgatgctggtggtggtgatagttgtgatgatcaagattggtttgtgtaggagaaatgaaaagggaggggagatgggaaattattgactatatatatagaagagagagagaggtgagtaaagtacttttaaatatgtgccacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="8260" stop="9638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8557" g_stop="9326" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="755" r_length="755" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E690535" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8557" e_stop="9326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGTTATTTCAAACACTGACGGAGCAATCCCGGGCTAGTTGATACTTAACGGCGTTATTTCCAACCATAACCCCTCCGTAACCGGGCCGATCACCAAGTGGCACGTAAGCAGAGCACGTGACATGCAGATGGTAATGGCCCGTTGTTATGGACCCCACTTTCCATTTTACCCGTCCATCAATCTTAAAATCCAACCAAACGCCACCGTTTTGTTGATCCTCTGACAGGCCCGGCCCGTTATACGGAGCGATCGGGATGTTATTCCCATAAACAAACGGGGACCATATGTTAACATCCTTATGGCCTTGATACACCTGGGGTATTTGCGTGTAATACGTGATTTGTTGATTATGATACGTAGCGTATACATGCATGCTATCATAATAAATTCCGATTTTGCTATTAGGGTTTCGAGCGTATATTGTGGTTTGGATAGAGGTCGAGAAGATGTTTGGGGCGGATACGTTGAAGGTAAAGATAGTTGTGTCTTGGAGAATGAAACGAGGTTTTTTGGGGTGAAGTACGGCCCATACTATGAGGATAGTGAGAAGAGCTAAGAAGAGGAAGATAAGAACTCCAGCACAAATACGTCGAATTAGCTTTTTCTTCTTGCTCTTGTGGTGGCTACACTTTTTATCCGACATGTCGGTGATGGTGGTGGTGATAGTTGTGATGGTCGAGGGAGGAGAGAAAAAAAAGTTGTTTGTGTAGGAGAAATGAGAAGGGAGGGGAGATGGGAAATGATTGACTATATATATATAGAGAGAG</genome_strand>
        <mrna_strand>CGT-TTTTCTTCAAACGCTGACGGAGCAATCCCGTGCTAGTTGATACTTAACGGCGTTATTTCCCACCATAACCCCTCCATAACCGGGCCTATCACCAAGTGGCACGTAAGCAGAGCACGTGACATGTAAATGGTAATGACCCGTTGTTATGGACCCGACTTTCCATTTTACCCGCCCATCAATCTTGAAATCCAACCAAACGCCGCCGTTTTGTTGATCCTCTGACAGGCCCGGCCCGTTATACGGGGCGATTGGGATGTTATTCCCATAAACAAACGGGGACCATATGTTGACATCCTTATGGCCTTGATACACCTCGGGTATTTGCGTGTAATACGTGATTTGTTGATTATGATACGTAGCGTATACATGCATGCTATCGTAATAAATTCCGATTTTGCTATTAGGGTTTCGGGAGTATATTGTGGTTTGGATAGAGGTTGAGAAGATGTTTGGGGCGGATACGTTGAAGGTAAAGATAGTTGTGTCTTGGAGAATGAAACGAGGTTTTTTGGGATGAAGAACGGCCCATACTATGAGGATAGTGAGAAGAGCTAAGAAGAGGAAGATTAGAACTCCAACACAAATGCGTCGAATTAGCTTTTTCTTCTTGCTCTTGTGGTGGCTACACTTTTTATCCGACATGTCGGTGATGCTGGT-G-G-T-G--GTGATAGT----TG-TGA-TG-ATCAAGATTGGTTTGTGTAGGAGAAATGAAAAGGGAGGGGAGATGGGAAATTATTGACTATATATATAGA-AGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719197" ref_strand="+" ref_description="SGN-E719197 [FC07AC02]">
      <seq>agcaagaaaaaaaagctaattcgacgtatttttgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgaacttcaccccaaaaaacctcgtttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatatgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcaggtattacacgcagataccccaggtgtatcaatgccataaggatgtgaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcaaaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatgaaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttggtgatcggcccggttacggaggggttatggttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9472" stop="8317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9172" g_stop="8617" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E719197" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9172" e_stop="8617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAA</genome_strand>
        <mrna_strand>AGCAAGAAAAAAAAGCTAATTCGACGTATTTTTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGAACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATATGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCAGGTATTACACGCAGATACCCCAGGTGTATCAATGCCATAAGGATGTGAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAAAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGAAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724898" ref_strand="+" ref_description="SGN-E724898 [FC25BH09]">
      <seq>tcctccctccgccatcacaactatcaccaccaccatcaccgacatgtcggataaaaagtgtagccaccacaagagcaagaagaaaaagctaattcgacgtatttttgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgtacttcaccccaaaaaacctcgtttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatatgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcaaataccccaggtgtatcaaggccataaggatgtgaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcaaaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttggtgatcggcccggttacggaggggttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9545" stop="8323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9245" g_stop="8623" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E724898" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9245" e_stop="8623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGG</genome_strand>
        <mrna_strand>TCCTCCCTCCGCCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTTTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATATGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTGAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAAAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373728" ref_strand="+" ref_description="SGN-E373728 [TUS-33-O20]">
      <seq>tcacaactatcaccaccaccatcaccgacatgtcggataaaaagtgtagccaccacaagagcaagaagaaaaagctaattcgacgtatttgtgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgtacttcaccccaaaaaacctcgtttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatacgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcaaataccccaggtgtatcaaggccataaggatgttaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcagaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttggtgatcggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9531" stop="8341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9231" g_stop="8641" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E373728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9231" e_stop="8641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCG</genome_strand>
        <mrna_strand>TCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345715" ref_strand="+" ref_description="SGN-E345715 [cTOF-18-B10]">
      <seq>tcacaactatcaccaccaccatcaccgacatgtcggataaaaagtgtagccaccacaagagcaagaagaaaaagctaattcgacgtatttgtgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgtacttcaccccaaaaaacctcgtttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatacgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcaaataccccaggtgtatcaaggccataaggatgttaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcagaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttgggtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9531" stop="8347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9231" g_stop="8647" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E345715" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9231" e_stop="8647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTT-GGTGATC</genome_strand>
        <mrna_strand>TCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303791" ref_strand="+" ref_description="SGN-E303791 [cLEX-4-M6]">
      <seq>ctacacaaacaacttttttttctctcctccctcgaccatcacaactatcaccaccaccatcaccgacatgtcggataaaaagtgtagccaccacaagagcaagaagaaaaagctaattcgacgtatttgtgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgtacttcaccccaaaaaacctcgtttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatacgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcaaataccccaggtgtatcaaggccataaggatgttaacatatggtccccgtttgtttatgggaataacatcccgatcgctccgtataacgggccgggcctgtcagaggatcaacaaaacggtggcgtttggttggattttaagattgatggacgggtaaaatggaaagtggggtccataacaacgggccattaccatctgcatgtcacgtgctctgcttacgtgccacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9569" stop="8353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9269" g_stop="8653" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E303791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9269" e_stop="8653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACAAACAACTTTTTTTTCTCTCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTG</genome_strand>
        <mrna_strand>CTACACAAACAACTTTTTTTTCTCTCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378575" ref_strand="+" ref_description="SGN-E378575 [TUS-33-O20]">
      <seq>tcacaactatcaccaccaccatcaccgacatgtcggataaaaagtgtagccaccacaagagcaagaagaaaaagctaattcgacgtatttgtgctggagttcttatcttcctcttcttagctcttctcactatcctcatagtatgggccgtacttcaccccggggagcctcggttcattctccaagacacaactatctttaccttcaacgtatccgccccaaacatcttctcgacctctatccaaaccacaatatacgctcgaaaccctaatagcaaaatcggaatttattatgatagcatgcatgtatacgctacgtatcataatcaacaaatcacgtattacacgcaaataccccaggtgtatcaagggcataaggatgttaacatatggaccccgtttgtttatgggaataacatcccgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="9531" stop="8506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9231" g_stop="8806" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E378575" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9231" e_stop="8806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCG</genome_strand>
        <mrna_strand>TCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCGGGGAGCCTCGGTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGGCATAAGGATGTTAACATATGGACCCCGTTTGTTTATGGGAATAACATCCCGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="18239" stop="17159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17939" g_stop="17459" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17939" e_stop="17459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGAGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATAATATCTACTAAGTACCCGTGTTTTGTATTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCACTACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGG-ATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="18240" stop="17403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17940" g_stop="17701" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17940" e_stop="17701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGAGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGG-GATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25959" stop="17483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18575" g_stop="18097" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18096" i_stop="18028" i_length="69">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18027" g_stop="17783" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="717" r_length="242" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18575" e_stop="18097"/>
          <exon e_start="18027" e_stop="17783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCAGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAACGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTTATAATGAGGCCTTGGTATAAAAGAAGGTGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAAAGGGAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGATACGTAGAATTAGGGAATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGAATCGG-GTGTCACGAACCGACACGTAGATTTAGGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGAGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAG-ATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGA.....................................................................T-TTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTA-GGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATA-TGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="19551" stop="20328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19851" g_stop="20027" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19851" e_stop="20027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGTTATCCCAATGTCCTCCAAATTCTATCACACATGCACGAAGCATATCCTCCAATACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="21032" stop="22344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21332" g_stop="22044" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21332" e_stop="22044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAAGCGGCGATAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAAAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGTAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTAGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACACTCGGAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="21032" stop="22226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21332" g_stop="21927" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21332" e_stop="21927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAAGCGGCGATAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAAAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGTAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTAGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACACTCGGAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="21032" stop="22157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21332" g_stop="21857" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21332" e_stop="21857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAAGCGGCGATAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAAAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGTAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTAGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="21103" stop="22381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21403" g_stop="22082" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21403" e_stop="22082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAAAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGTAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTAGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACACTCGGAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="21103" stop="22061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21403" g_stop="21761" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21403" e_stop="21761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAAAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGTAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTAGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="21552" stop="22810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21852" g_stop="22510" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21852" e_stop="22510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACACTCGGAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGCACTGGTTTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTGAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCT-AAAAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="23648" stop="21640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23348" g_stop="23176" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23175" i_stop="22432" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.174" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22431" g_stop="21904" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23348" e_stop="23176"/>
          <exon e_start="22431" e_stop="21904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACAACGAAATCTTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGAAGGAGTAAAGCCAGATGACTTCACCATGGCAACTACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTTTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGGCCTATGCTTGATTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACATGGTGGTCGAGGTAATGGTGGTCACCAAAATGACCGGGGTGATGGGAAAATTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTCAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAAACCAGTGCGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTTCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTCCGAGTGTGCATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="21621" stop="22982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21921" g_stop="22682" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21921" e_stop="22682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGCACTGGTTTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTGAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="21621" stop="22881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21921" g_stop="22581" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21921" e_stop="22581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGCACTGGTTTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTGAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355026" ref_strand="+" ref_description="SGN-E355026 [cTOS-19-F16]">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="21848" stop="22990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22148" g_stop="22690" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E355026" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22148" e_stop="22690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGCACTGGTTTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTGAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="22024" stop="22950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22324" g_stop="22654" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22324" e_stop="22654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTGAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="22231" stop="23389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22531" g_stop="23089" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22531" e_stop="23089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCCATCACCCCGGTCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAATCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="22315" stop="23704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22615" g_stop="23404" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22615" e_stop="23404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCCATCACCCCGGTCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAATCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTAGTTGCCATGGTGAAGTCATCTGGCTTTACTCCTTCTACCTCTATCACGAAGTCTACCACTTCTTGAAAAGATTTCGTTGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCCTATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="22317" stop="23449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22617" g_stop="23150" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22617" e_stop="23150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCCATCACCCCGGTCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAATCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTAGTTGCCATGGTGAAGTCATCTGGCTTTACTCCTTCT</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="22392" stop="23688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22691" g_stop="23388" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22691" e_stop="23388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCCATCACCCCGGTCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAATCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTAGTTGCCATGGTGAAGTCATCTGGCTTTACTCCTTCTACCTCTATCACGAAGTCTACCACTTCTTGAAAAGATTTCGTTGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCCTATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="22953" stop="24271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23252" g_stop="23971" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23252" e_stop="23971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCCTATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACTGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTTATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCGGAGTCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGCCTAACCTTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATTTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGCTCATATTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTTAGTCGGTGGAGGAGTCACCGTCCTAGCATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="22955" stop="24218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23255" g_stop="23918" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23255" e_stop="23918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCCTATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACTGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTTATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCGGAGTCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGCCTAACCTTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATTTCTGGGGTAGGTTGGGGTGGCA-ATCCCTCATTCTGCACTTGCTCATATTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="24275" stop="23122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23975" g_stop="23422" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23975" e_stop="23422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAAGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="24501" stop="25439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24801" g_stop="25139" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24801" e_stop="25139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCTCTCAATATTCATTAATCCTCTTGTGTCGATATATGACACTCCGATCCCCCTAAATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGAT-CCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25959" stop="24956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25659" g_stop="25255" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25659" e_stop="25255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAACGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTTATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAGGGAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGAATCGGGTGTCACGAACCGATACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAG-ATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349296" ref_strand="+" ref_description="SGN-E349296 [cTOS-2-P10]">
      <seq>gaaaaactggcagaaatgacggaccccacgacggaccatcatgggcacgacggaccgtcgcagggtctcatttcaaaacacttaggaaatctgaaattgggtactgaaaatcgactctctgaacttcgtaacggaatggcaagacggaccgtcacaggcgtgatggaccatcacagagtcttcagtgaaaatccagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacaacgggctgtcacaggctgcgtaaatcccagtctgagtcggaattcctcaattgttttaagggacgtttttgactattcctgctttaattataaagttagtgggttaatgttaataagtctaattacttgggggttaaaagaggtaaccttaagttaattagtgggttattattgccatattttattcttaattatatactaattagggtaaaagaaagagggtttgaataaagaaaatagaaagaacaagagaaagagagagaaagtcgaacgagaaagaggatcgaacgagaggaaaaaacacaaagcttgggaaatcacttgcttgatcacgaatcttcggtggaggtaggttatggtttctcttacgatattcgtagtaagctcttaatagcgaataatatgtattgataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="26533" stop="25275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26233" g_stop="25575" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E349296" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26233" e_stop="25575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACAGGCTGGGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGTGATGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCTGTCACAGACTGCGT-AATCCTAGTCTGGATCGGATTTCCTTATGCGTTTTAAGGGGCGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAACACAAAGCTTGGGAAATTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATT</genome_strand>
        <mrna_strand>GAAAAACTGGCAGAAATGACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCAGGGTCTCATTTCAAAACACTTAGGAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAGGCGTGATGGACCATCACAGAGTCTTCAGTGAAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCTGTCACAGGCTGCGTAAATCCCAGTCTGAGTCGGAATTCCTCAATTGTTTTAAGGGACGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAGCTCTTAATAGCGAATAATATGTATTGATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396054" ref_strand="+" ref_description="SGN-E396054 [TUS-18-N18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25722" g_stop="26281" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26282" i_stop="27184" i_length="903">
            <donor d_prob="0.835" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27185" g_stop="27243" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="618" r_length="59" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E396054" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25722" e_stop="26281"/>
          <exon e_start="27185" e_stop="27243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACTTTCTCTCTCTTTCTCT-TGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTTCCTACTTAAATATTATTATTATTTTACGATTTATAACACTATTAGAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389553" ref_strand="+" ref_description="SGN-E389553 [TUS-4-G14](-)">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcgttcctacttaaatattattattattttacgatttataacactattagaaacaaagattttctcaaccatgaattaatgaaaaaattatggaataaaatataaaaaattactcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25722" g_stop="26281" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26282" i_stop="26569" i_length="288">
            <donor d_prob="0.835" d_score="0.90"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26570" g_stop="26594" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="584" r_length="25" r_score="0.480"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26595" i_stop="27127" i_length="533">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27128" g_stop="27224" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="681" r_length="97" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E389553" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25722" e_stop="26281"/>
          <exon e_start="26570" e_stop="26594"/>
          <exon e_start="27128" e_stop="27224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACTTTCTCTCTCTTTCTCT-TGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT................................................................................................................................................................................................................................................................................................ATGTTCGTTCCTACTTAAATATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTTTACGATTTATAACACTATTAGAAACAAAGATTTTCTCAACCATGAATTAATGAAAAAATTATGGAATAAAATATAAAAAATTACTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550127" ref_strand="+" ref_description="SGN-E550127 [TUS-5-G26](-)">
      <seq>atcgattctccttctctctctttctgtccttttctttttcttatcaaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagatttgcacaaccatgaattaatgaaaaaattatgacataaaatataaaaaattactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25722" g_stop="26281" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26282" i_stop="26569" i_length="288">
            <donor d_prob="0.835" d_score="0.90"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26570" g_stop="26594" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="583" r_length="24" r_score="0.560"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26595" i_stop="27127" i_length="533">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27128" g_stop="27223" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="679" r_length="96" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E550127" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25722" e_stop="26281"/>
          <exon e_start="26570" e_stop="26594"/>
          <exon e_start="27128" e_stop="27223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTCCTTTTCTTTTTCTTATCAAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT................................................................................................................................................................................................................................................................................................ATGTTCTTCCTACTTAAAT-ATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTTTACGATTTATAACACTATTAGAAACAAAGATTTGCACAACCATGAATTAATGAAAAAATTATGACATAAAATATAAAAAATTACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550140" ref_strand="+" ref_description="SGN-E550140 [TUS-5-H36](-)">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaattactcnaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagatgttatcaaccatgaattaacaaaaaattagaccaaaaatataaaaaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25722" g_stop="26281" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26282" i_stop="26569" i_length="288">
            <donor d_prob="0.835" d_score="0.90"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26570" g_stop="26594" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="583" r_length="24" r_score="0.560"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26595" i_stop="27127" i_length="533">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27128" g_stop="27217" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="673" r_length="90" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E550140" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25722" e_stop="26281"/>
          <exon e_start="26570" e_stop="26594"/>
          <exon e_start="27128" e_stop="27217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACTTTCTCTCTCTTTCTCT-TGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTACTCNAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT................................................................................................................................................................................................................................................................................................ATGTTCTTCCTACTTAAAT-ATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTTTACGATTTATAACACTATTAGAAACAAAGATGTTATCAACCATGAATTAACAAAAAATTAGACCAAAAATATAAAAAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396058" ref_strand="+" ref_description="SGN-E396058 [TUS-18-N22]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtgtttccaaaaataaaatctgctactcacaacgactaaacaggtcgttacatttaggttcttcatagttaactattattattattttacgatttataacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25722" g_stop="26281" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26282" i_stop="27136" i_length="855">
            <donor d_prob="0.835" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="27187" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="610" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E396058" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25722" e_stop="26281"/>
          <exon e_start="27137" e_stop="27187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACTTTCTCTCTCTTTCTCT-TGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTGTTTCCAAAAATAAAATCTGCTACTCACAACGACTAAACAGGTCGTTACATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTCTTCATAGTTAACTATTATTATTATTTTACGATTTATAACACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374999" ref_strand="+" ref_description="SGN-E374999 [TUS-36-E19]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactccaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagattttcttcaccctgaattaatgaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25723" g_stop="26281" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26282" i_stop="27154" i_length="873">
            <donor d_prob="0.835" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27155" g_stop="27245" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="649" r_length="91" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E374999" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25723" e_stop="26281"/>
          <exon e_start="27155" e_stop="27245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTTTCTCTCTCTTTCTCT-TGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAT</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCCAAACGACTAAACAGGTCGTTACATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTTCCTACTTAAATATTATTATTATTTTACGATTTATAACACTATTAGAAACAAAGATTTTCTTCACCCTGAATTAATGAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377133" ref_strand="+" ref_description="SGN-E377133 [TUS-21-E13]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagattttctcaaccatgaattaatgaaaaaattatgccataaaatataaaaaatttactcatttttcattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25723" g_stop="26281" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26282" i_stop="26569" i_length="288">
            <donor d_prob="0.835" d_score="0.90"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26570" g_stop="26594" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="582" r_length="24" r_score="0.560"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26595" i_stop="27127" i_length="533">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27128" g_stop="27235" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="690" r_length="108" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E377133" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25723" e_stop="26281"/>
          <exon e_start="26570" e_stop="26594"/>
          <exon e_start="27128" e_stop="27235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTTTCTCTCTCTTTCTCT-TGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT................................................................................................................................................................................................................................................................................................ATGTTCTTCCTACTTAAAT-ATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTTTACGATTTATAACACTATTAGAAACAAAGATTTTCTCAACCATGAATTAATGAAAAAATTATGCCATAAAATATAAAAAATTTACTCATTTTTCATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="26578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25723" g_stop="26281" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25723" e_stop="26281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTTTCTCTCTCTTTCTCT-TGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="26568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25723" g_stop="26268" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25723" e_stop="26268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTTTCTCTCTCTTTCTCT-TGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="26495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25723" g_stop="26195" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25723" e_stop="26195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTTTCTCTCTCTTTCTCT-TGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550322" ref_strand="+" ref_description="SGN-E550322 [TUS-5-G26]">
      <seq>tcgcaccagatcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagattttctcaaccatgaattaatgaaaaaattatgccataaaatataaaaaatttactcatttttcattgagctaattcataaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25427" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25728" g_stop="26277" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="564" r_length="545" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26278" i_stop="26569" i_length="292">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26570" g_stop="26594" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="589" r_length="25" r_score="0.640"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26595" i_stop="27086" i_length="492">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27087" g_stop="27225" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="726" r_length="137" r_score="0.588"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E550322" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25728" e_stop="26277"/>
          <exon e_start="26570" e_stop="26594"/>
          <exon e_start="27087" e_stop="27225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CTTCTCTCTCTTTCTGTTCT--TTTCT-TTTTC-TTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTAC....................................................................................................................................................................................................................................................................................................ATTTATGTTCTTCCTACTTAAATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAT-TATTTTACGATTTATAACACT-ATTAGAAACAAAGATTTTCTCAACCATGAATTAATGAAAAAATTATGCCATAAAATATAAAAAATTTACTCATTTTTCATTGAGCTAATTCATAAAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396057" ref_strand="+" ref_description="SGN-E396057 [TUS-18-N22](-)">
      <seq>ttttttattcaaaccttcttttttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttttaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagattttctcaaccatgaattaatgaaaaaattatgccataaaatataaaaaatttactcatttttcattgagctaattcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25458" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25758" g_stop="26277" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26278" i_stop="26569" i_length="292">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26570" g_stop="26594" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="544" r_length="25" r_score="0.640"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26595" i_stop="27086" i_length="492">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27087" g_stop="27218" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="674" r_length="130" r_score="0.588"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E396057" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25758" e_stop="26277"/>
          <exon e_start="26570" e_stop="26594"/>
          <exon e_start="27087" e_stop="27218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTTTTTATTCAAACCTTCTTTTTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTTTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTAC....................................................................................................................................................................................................................................................................................................ATTTATGTTCTTCCTACTTAAATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAT-TATTTTACGATTTATAACACT-ATTAGAAACAAAGATTTTCTCAACCATGAATTAATGAAAAAATTATGCCATAAAATATAAAAAATTTACTCATTTTTCATTGAGCTAATTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377132" ref_strand="+" ref_description="SGN-E377132 [TUS-21-E13](-)">
      <seq>ttccttcttttaccctaattagcatatatttaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagattttctcaaccatgaattaatgaaaaaattatgccataaaatataaaaaatttactcatttttcattgagctaattcataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25474" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25773" g_stop="26277" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26278" i_stop="26569" i_length="292">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26570" g_stop="26594" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="529" r_length="25" r_score="0.640"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26595" i_stop="27086" i_length="492">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27087" g_stop="27217" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="658" r_length="129" r_score="0.588"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E377132" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25773" e_stop="26277"/>
          <exon e_start="26570" e_stop="26594"/>
          <exon e_start="27087" e_stop="27217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTCCTTCTTTTACCCTAATTAGCATATATTTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTAC....................................................................................................................................................................................................................................................................................................ATTTATGTTCTTCCTACTTAAATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAT-TATTTTACGATTTATAACACT-ATTAGAAACAAAGATTTTCTCAACCATGAATTAATGAAAAAATTATGCCATAAAATATAAAAAATTTACTCATTTTTCATTGAGCTAATTCATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398551" ref_strand="+" ref_description="SGN-E398551 [TUS-18-N18](-)">
      <seq>tagcatataattaagaataaaagatggaataataacccaataatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagattttctcaaccatgaattaatgaaaaaattatgccataaaatataaaaaatttactcatttttcattgagctaattcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25492" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25792" g_stop="26277" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26278" i_stop="26569" i_length="292">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26570" g_stop="26594" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="510" r_length="25" r_score="0.640"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26595" i_stop="27086" i_length="492">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27087" g_stop="27218" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="640" r_length="130" r_score="0.588"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E398551" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25792" e_stop="26277"/>
          <exon e_start="26570" e_stop="26594"/>
          <exon e_start="27087" e_stop="27218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCAATAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTAC....................................................................................................................................................................................................................................................................................................ATTTATGTTCTTCCTACTTAAATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAT-TATTTTACGATTTATAACACT-ATTAGAAACAAAGATTTTCTCAACCATGAATTAATGAAAAAATTATGCCATAAAATATAAAAAATTTACTCATTTTTCATTGAGCTAATTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396038" ref_strand="+" ref_description="SGN-E396038 [TUS-18-L22](-)">
      <seq>ttaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagattttctcaaccatgaattaatgaaaaaattatgccataaaatataaaaaatttactcatttttcatagagttaaataataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="25502" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25802" g_stop="26277" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26278" i_stop="26569" i_length="292">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26570" g_stop="26594" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="500" r_length="25" r_score="0.640"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26595" i_stop="27086" i_length="492">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27087" g_stop="27218" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="630" r_length="130" r_score="0.588"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E396038" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25802" e_stop="26277"/>
          <exon e_start="26570" e_stop="26594"/>
          <exon e_start="27087" e_stop="27218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAAGTATAGCGTAATATCACATCCATCATATCAGCAACTTATCAAACAATTAAAAGATAACACAAACACAACATTTGATCATGAATTAATGATTTGAAAAAGAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGAGAGTTAGTGTGTGGGGGGGGTGAGAGTGTGAGAGAGAGATATATATATATATGTATATATATGTGTGTATGTAGATTTTTTTTTTTTAAAAATAAATAGAGAGAGTGGGAGAAAGAAGGAGAGAAGAGAGAGAAGTAAGTGGGTGTGGAGGAATTTGTTTTTGAAATATATTGTTATTGAAATTTTGAGAATAATAATAATATTAATTTTATGTGAGTTGTATATAAAGAATTTGAATTATTAGAAATAATAAGTATTATTTTATTTAATATTATGATTTTTGTGTTAAATTTTTTTTGTGAGNAATATTTTTTAATATTAAATAGTAATATGTTATATTTTAATAGAATAGGATATTTAAAATGAAATTTTGTTAATATAAATATAAAATTTTTTAAATTAAAAAAAATTTTTTAAATATAATTTGTATATAAATTATGAAAAAAAAAGAATTAATATATAAAATTAAAAATATATTATATTTTAATTATAATTTAAAAAGTTAAAATTAAAAAAAAATTTGGGAATATTTAATAATTATTTTTTGATTAATTTTAATTAATGATTATTAATTTTATGGGTAAATTAAATTAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTAC....................................................................................................................................................................................................................................................................................................ATTTATGTTCTTCCTACTTAAATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAT-TATTTTACGATTTATAACACT-ATTAGAAACAAAGATTTTCTCAACCATGAATTAATGAAAAAATTATGCCATAAAATATAAAAAATTTACTCATTTTTCATAGAGTTAAATAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337545" ref_strand="+" ref_description="SGN-E337545 [cTOE-11-A2]">
      <seq>ttttttttttcactagctcaaaagccttcaatttttcgagtaattttcttcagcaactcagtttttctcttcttgaagtttcaataatcttccattaacaagtgttagcaatcattaacagcagcaaaagaggataagatgaagttggatgttaacgttttgagatacctttcgaaagatgatttcagggtccttactgccgttgagatgggaatgcgcaatcatgagattgtgccttgtgagctcattgaccggattgctcgcctcaagcatggaggcacatataaagtgttgaagaatttgctaaagcacaaattagtgcatcatgactcttctaaatatgatggatttcgactcacctaccttggttatgatttccttgcgataaagactttggttaatcgtgggatgtttaatggagtgggtcgtcaaattggtgttggaaaagagtctgatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="33289" stop="35000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33589" g_stop="33689" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33690" i_stop="34062" i_length="373">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34063" g_stop="34183" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="222" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34184" i_stop="34265" i_length="82">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34266" g_stop="34312" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="269" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34313" i_stop="34415" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34416" g_stop="34486" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="340" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34487" i_stop="34578" i_length="92">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34579" g_stop="34692" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="454" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34693" i_stop="34775" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34776" g_stop="34783" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="462" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E337545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33589" e_stop="33689"/>
          <exon e_start="34063" e_stop="34183"/>
          <exon e_start="34266" e_stop="34312"/>
          <exon e_start="34416" e_stop="34486"/>
          <exon e_start="34579" e_stop="34692"/>
          <exon e_start="34776" e_stop="34783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTCACTAGCTCAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAAGTAAGTATTGTATTAATTCTATCAATTAAACTTTTTTTTTTTTTAGAAATTTAGTTTAGTATTTTGTTGTGTTTGGAGCCATAGTTGTTGTGTATAGAACAGGAATAAAAATCAAAGATTCAATGATTTTTGTGTAGTAAATGATATGGGGTTTCGACCCTTTACATGTTTCTTGTTTATCTTTTGTAAAGTTATGATCTTTTTTAGGTTCAGATGTTATGGTGTTCAAGCTACTGTAATTGGTTCCTTTTATCTTATCTCTGTCTGTCCTAAAATTAACTTTGTATAGTAGCTCTTGGAGCTGATTATAATCCTCAAACTTCTCAATATTTTGTCTAAATTGCATAATCTTTGGTGGGTTTTTTGTATAAAGGTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAATGTCTGTAAAATCGTATACACCCTTTTCGACTTTGATTTGTTTTCTTTTCAGTTTATGATGGTTTGTGTTTTGGCTTTTTCAGCATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAAGTTAGTCCATTTTTCTGAATTGGAAATACATTAGCTGTTGTGTTGTTTTGTTATTTTTTTTTTCTGTTTTTTTGTTTTTATAGTTATGTTTAATTGTTTTTAGGCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAATGTGAGTGTTTTGATTGTTTTTGTTTTGTTAAAAGCTACAGTATTGGGGCTACCTTTTTGTTCTGAATTTTATTTCTTAACATTGCTGTGTAGATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTGGTAAATTTTCATCAATATTCTTGTGTTTAACTGTTGTTTTTGTTACTTTATAATTTATACTTAAATGTATCCATTTTTTATAGATATTTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTCACTAGCTCAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAA.....................................................................................................................................................................................................................................................................................................................................................................................GTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAAT..................................................................................CATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAA.......................................................................................................GCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAAT............................................................................................ATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTG...................................................................................ATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337441" ref_strand="+" ref_description="SGN-E337441 [cTOE-11-A14]">
      <seq>ttttttttttcactagctcaaaagccttcaatttttcgagtaattttcttcagcaactcagtttttctcttcttgaagtttcaataatcttccattaacaagtgttagcaatcattaacagcagcaaaagaggataagatgaagttggatgttaacgttttgagatacctttcgaaagatgatttcagggtccttactgccgttgagatgggaatgcgcaatcatgagattgtgccttgtgagctcattgaccggattgctcgcctcaagcatggaggcacatataaagtgttgaagaatttgctaaagcacaaattagtgcatcatgactcttctaaatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="33289" stop="34790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33589" g_stop="33689" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33690" i_stop="34062" i_length="373">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34063" g_stop="34183" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="222" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34184" i_stop="34265" i_length="82">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34266" g_stop="34312" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="269" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34313" i_stop="34415" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34416" g_stop="34491" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="345" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E337441" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33589" e_stop="33689"/>
          <exon e_start="34063" e_stop="34183"/>
          <exon e_start="34266" e_stop="34312"/>
          <exon e_start="34416" e_stop="34491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTCACTAGCTCAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAAGTAAGTATTGTATTAATTCTATCAATTAAACTTTTTTTTTTTTTAGAAATTTAGTTTAGTATTTTGTTGTGTTTGGAGCCATAGTTGTTGTGTATAGAACAGGAATAAAAATCAAAGATTCAATGATTTTTGTGTAGTAAATGATATGGGGTTTCGACCCTTTACATGTTTCTTGTTTATCTTTTGTAAAGTTATGATCTTTTTTAGGTTCAGATGTTATGGTGTTCAAGCTACTGTAATTGGTTCCTTTTATCTTATCTCTGTCTGTCCTAAAATTAACTTTGTATAGTAGCTCTTGGAGCTGATTATAATCCTCAAACTTCTCAATATTTTGTCTAAATTGCATAATCTTTGGTGGGTTTTTTGTATAAAGGTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAATGTCTGTAAAATCGTATACACCCTTTTCGACTTTGATTTGTTTTCTTTTCAGTTTATGATGGTTTGTGTTTTGGCTTTTTCAGCATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAAGTTAGTCCATTTTTCTGAATTGGAAATACATTAGCTGTTGTGTTGTTTTGTTATTTTTTTTTTCTGTTTTTTTGTTTTTATAGTTATGTTTAATTGTTTTTAGGCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAATGTGAG</genome_strand>
        <mrna_strand>TTTTTTTTTTCACTAGCTCAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAA.....................................................................................................................................................................................................................................................................................................................................................................................GTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAAT..................................................................................CATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAA.......................................................................................................GCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313998" ref_strand="+" ref_description="SGN-E313998 [cTOA-19-F6]">
      <seq>tcaaaagccttcaatttttcgagtaattttcttcagcaactcagtgtttctcttcttgaagtttcaataatcttccattaacaagtgttagcaatcattaacagcagcaaaagaggataagatgaagttggatgttaacgttttgagatacctttcgaaagatgatttcagggtccttactgccgttgagatgggaatgcgcaatcatgagattgtgccttgtgagctcattgaccggattgctcgcctcaagcatggaggcacatataaagtgttgaagaatttgctaaagcacaaattagtgcatcatgactcttctaaatatgatggatttcgactcacctaccttggttatgatttccttgcgataaagactttggttaatcgtgggatgtttaatggagtgggtcgtcaaattggtgttggaaaagagtctgatatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="33306" stop="35000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33606" g_stop="33689" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33690" i_stop="34062" i_length="373">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34063" g_stop="34183" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="205" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34184" i_stop="34265" i_length="82">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34266" g_stop="34312" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="252" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34313" i_stop="34415" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34416" g_stop="34486" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="323" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34487" i_stop="34578" i_length="92">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34579" g_stop="34692" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="437" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34693" i_stop="34775" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34776" g_stop="34784" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="446" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E313998" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33606" e_stop="33689"/>
          <exon e_start="34063" e_stop="34183"/>
          <exon e_start="34266" e_stop="34312"/>
          <exon e_start="34416" e_stop="34486"/>
          <exon e_start="34579" e_stop="34692"/>
          <exon e_start="34776" e_stop="34784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAAGTAAGTATTGTATTAATTCTATCAATTAAACTTTTTTTTTTTTTAGAAATTTAGTTTAGTATTTTGTTGTGTTTGGAGCCATAGTTGTTGTGTATAGAACAGGAATAAAAATCAAAGATTCAATGATTTTTGTGTAGTAAATGATATGGGGTTTCGACCCTTTACATGTTTCTTGTTTATCTTTTGTAAAGTTATGATCTTTTTTAGGTTCAGATGTTATGGTGTTCAAGCTACTGTAATTGGTTCCTTTTATCTTATCTCTGTCTGTCCTAAAATTAACTTTGTATAGTAGCTCTTGGAGCTGATTATAATCCTCAAACTTCTCAATATTTTGTCTAAATTGCATAATCTTTGGTGGGTTTTTTGTATAAAGGTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAATGTCTGTAAAATCGTATACACCCTTTTCGACTTTGATTTGTTTTCTTTTCAGTTTATGATGGTTTGTGTTTTGGCTTTTTCAGCATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAAGTTAGTCCATTTTTCTGAATTGGAAATACATTAGCTGTTGTGTTGTTTTGTTATTTTTTTTTTCTGTTTTTTTGTTTTTATAGTTATGTTTAATTGTTTTTAGGCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAATGTGAGTGTTTTGATTGTTTTTGTTTTGTTAAAAGCTACAGTATTGGGGCTACCTTTTTGTTCTGAATTTTATTTCTTAACATTGCTGTGTAGATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTGGTAAATTTTCATCAATATTCTTGTGTTTAACTGTTGTTTTTGTTACTTTATAATTTATACTTAAATGTATCCATTTTTTATAGATATTTTTG</genome_strand>
        <mrna_strand>TCAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTGTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAA.....................................................................................................................................................................................................................................................................................................................................................................................GTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAAT..................................................................................CATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAA.......................................................................................................GCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAAT............................................................................................ATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTG...................................................................................ATATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338547" ref_strand="+" ref_description="SGN-E338547 [cTOE-15-E15]">
      <seq>taattttcttcagcaactcagtttttctcttcttgaagtttcaataatcttccattaacaagtgttagcaatcattaacagcagcaaaagaggataagatgaagttggatgttaacgttttgagatacctttcgaaagatgatttcagggtccttactgccgttgagatgggaatgcgcaatcatgagattgtgccttgtgagctcattgaccggattgctcgcctcaagcatggaggcacatataaagtgttgaagaatttgctaaagcacaaattagtgcatcatgactcttctaaatatgatggatttcgactcacctaccttggttatgatttccttgcgataaagactttggttaatcgtgggatgtttaatggagtgggtcgtcaaattggtgttggaaaagagtctgatatttttgaagttgtaaaggaagatggcacagttcttgcaatgaagttgcacagacttggtagggtttcttttagggcagtcaaatcgaaacgtgactatttgaggcatcgtagtagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="33329" stop="35196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33629" g_stop="33689" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33690" i_stop="34062" i_length="373">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34063" g_stop="34183" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="182" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34184" i_stop="34265" i_length="82">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34266" g_stop="34312" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="229" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34313" i_stop="34415" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34416" g_stop="34486" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="300" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34487" i_stop="34578" i_length="92">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34579" g_stop="34692" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="414" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34693" i_stop="34775" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34776" g_stop="34896" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="535" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E338547" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33629" e_stop="33689"/>
          <exon e_start="34063" e_stop="34183"/>
          <exon e_start="34266" e_stop="34312"/>
          <exon e_start="34416" e_stop="34486"/>
          <exon e_start="34579" e_stop="34692"/>
          <exon e_start="34776" e_stop="34896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAAGTAAGTATTGTATTAATTCTATCAATTAAACTTTTTTTTTTTTTAGAAATTTAGTTTAGTATTTTGTTGTGTTTGGAGCCATAGTTGTTGTGTATAGAACAGGAATAAAAATCAAAGATTCAATGATTTTTGTGTAGTAAATGATATGGGGTTTCGACCCTTTACATGTTTCTTGTTTATCTTTTGTAAAGTTATGATCTTTTTTAGGTTCAGATGTTATGGTGTTCAAGCTACTGTAATTGGTTCCTTTTATCTTATCTCTGTCTGTCCTAAAATTAACTTTGTATAGTAGCTCTTGGAGCTGATTATAATCCTCAAACTTCTCAATATTTTGTCTAAATTGCATAATCTTTGGTGGGTTTTTTGTATAAAGGTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAATGTCTGTAAAATCGTATACACCCTTTTCGACTTTGATTTGTTTTCTTTTCAGTTTATGATGGTTTGTGTTTTGGCTTTTTCAGCATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAAGTTAGTCCATTTTTCTGAATTGGAAATACATTAGCTGTTGTGTTGTTTTGTTATTTTTTTTTTCTGTTTTTTTGTTTTTATAGTTATGTTTAATTGTTTTTAGGCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAATGTGAGTGTTTTGATTGTTTTTGTTTTGTTAAAAGCTACAGTATTGGGGCTACCTTTTTGTTCTGAATTTTATTTCTTAACATTGCTGTGTAGATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTGGTAAATTTTCATCAATATTCTTGTGTTTAACTGTTGTTTTTGTTACTTTATAATTTATACTTAAATGTATCCATTTTTTATAGATATTTTTGAGGTTGTAAAGGAAGATGGCACAGTTCTTGCAATGAAGTTGCACAGACTTGGTAGGGTTTCTTTTAGGGCAGTCAAATCGAAACGTGACTATTTGAGGCATCGTAGTAGCTA</genome_strand>
        <mrna_strand>TAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAA.....................................................................................................................................................................................................................................................................................................................................................................................GTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAAT..................................................................................CATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAA.......................................................................................................GCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAAT............................................................................................ATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTG...................................................................................ATATTTTTGAAGTTGTAAAGGAAGATGGCACAGTTCTTGCAATGAAGTTGCACAGACTTGGTAGGGTTTCTTTTAGGGCAGTCAAATCGAAACGTGACTATTTGAGGCATCGTAGTAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392700" ref_strand="-" ref_description="SGN-E392700 [TUS-36-L11](-)">
      <seq>ccacaattggctgtacttgtcccgacttgcttttttgaaagagtttgcttttatgaaggcactaaaagaatttttatttcctgttcctcaggctgtggattgcaaccgacattgtgtgattatgtcacttgtcccatgctatcctcttgtgcaggttaaggagctgcaaaacccatatgtggtttttgaaacaatcatctctgctgttattcgtttggcagaacacgggcttattcactgtgattttaatgaatttaacataatgattgatgatgatgaaaaggtcaccataattgatttcccactaatggtgtcagtctctcatcctaacgctcagatgtactttgatcgtgatgtggagtgcatctataagttctttgcaaagcggcacaatatgtcctttgatgaaaatgaaaatgattctgatggtttggagggtgacatacatgaagttggtcgcccccaattttctgaaataaacaagaacagcgggttcttggacaaaaaacttgctgccagtggtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="34594" stop="37106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34894" g_stop="34951" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34952" i_stop="35028" i_length="77">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35029" g_stop="35117" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="147" r_length="89" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35118" i_stop="35833" i_length="716">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.521" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35834" g_stop="35951" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="265" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35952" i_stop="36174" i_length="223">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36175" g_stop="36248" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="339" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36249" i_stop="36397" i_length="149">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36398" g_stop="36445" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="387" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36446" i_stop="36666" i_length="221">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36667" g_stop="36806" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="527" r_length="140" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E392700" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392700" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34894" e_stop="34951"/>
          <exon e_start="35029" e_stop="35117"/>
          <exon e_start="35834" e_stop="35951"/>
          <exon e_start="36175" e_stop="36248"/>
          <exon e_start="36398" e_stop="36445"/>
          <exon e_start="36667" e_stop="36806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATTGGCTGTACTTGTCCCGACTTGCTGCTTTGAAAGAGTTTGCTTTTATGAAGGTAAGTGCAGCTCTCTAATTTGCCGTATCGTCTTTGAATTAGGAGATTTGTTTGATATTAAACACTTGTGTAAACAGGCACTAGAAGAACATGGATTTCCTGTTCCTCAGGCTGTGGATTGCAACCGACATTGTGTGATTATGTCACTTGTCCCAGGCTATCCACTGTAAGTATTTCACAAATATAGTAACGATGGAGATTATCTGTTATACTAGAGTTTCCTAATATCTCTGAACTTCTGTAAACTTGGTGTTATTACTTAATTACGTACCAGTACATATGCAACATTTTTAGTCTATACCTAGCTTTATAATATTAGCCATAAGGATGCGAGAAGAGTTGTTTATTTCTAATCACCATCATAACCTGGAAAATATAGTTTTTATGGTATTTGAGGTTTAGTATAACCATAATTTTTCAGTAATTGAGTTTTTGTATAGTAGTAATTGGATTCTCCATAGCTTGCTTCATAGCAGTTCTCCTATCATGTTCTGTGTTTTTCCTTTCTTAAGTATGTTAGCTTCATCTACCTTTGTATGATCAAATTATGTGGCTAAACTGACCTTTGACCTTAACTAAATTGGTAATGTTAATTTTTCTTCCCAAATACTATTTAGGGATTCTCGCTCCCGCATAAACCCTATAATCTTGTCTAATCTATTTTGTGCTTATAGCAACAACTCATTGTAATAAATGGAATGCTTGGATACTCTATTAATAGCATTATGAGAATTATGTTAATCTGTAAAAGAAATTGTTATCTATGAACTTAACCTTAGAAAAAGCATATTCTTGATCTTCGGCTAACAGTGCATTATTATTGTATTTTTAGTTTCTTCCTAGAAATAGTGGCTGTAGAACTTATAGAAATGGTTATAATAGTGTGCAGGTTAGGGAGCTGCAAAACCCAGATGTGGTTTTTGAAACAATCATCGCTGCTGTTATTCGTTTGGCAGAACACGGGCTTATTCACTGTGATTTTAATGAATTTAACATAATGGTATCTTCTATTCCTTCTTTGATTTATTTAAGGTTATCATTATATTTAACTGCTATATTTTTTTGTTCCTTACGAGCTTGGTTCGCCAGTGTGCAAGTGGAATATGTTCTTCCATTTTTCATTTCTTTGCCCGTTTCAATTGCTCTGAATTTCTTTGTATAGGCTTATATTAGACCTGTTCGTCAGTTTGCTGATAATTCTTATGTACCTTATTGGATTACAGATTGATGATGATGAAAAGGTCACCATAATTGATTTCCCACAAATGGTGTCAGTCTCTCATCCTAACGCTCAGATGTAAGATATTTTCCCATCTTATTCCATCTAAACAGTCTTTCAGTATTCTGTTTTTCTTGTTAGTTCCCTCCCTTCATCTGGACCACTGTGTGCTATAGATTGTGCTCTTAGAAAAATTGCTGTCCCTGATACAAGTTTCTACATGTTAGGTACTTTGATCGTGATGTGGAGTGCATCTATAAGTTCTTTGCAAAGCGGTTAGTGAATTTACTCCTTTCTGTTTATTTGGAGAAGTCCATCTGTTTGACCAAGACGCTACCTGTGAAGACTTCTTCCACTTTATGATGTATTTTTGGGACTCATCTTTTGGAGTCACTTTTTTATCCTGATAACTATTTTGCTGCTACATATGAATTTGAGACGCTGAATTTTCCTTTGAAGCGTGAGCTCATAGTTTATCTCTCTTACCTATCTTTAGGTACAATATGTCCTTTGATGAAAATGAAAATGATTCTGATGGTTTGGAGGTTGACATAAATGAAGTTGGTCGCCCCCAATTTTCTGAAATAAACAAGAACAGCGGTTTCTTGGACAAAGAACTTGCTGCCAGTGGTTTTA</genome_strand>
        <mrna_strand>CCACAATTGGCTGTACTTGTCCCGACTTGCTTTTTTGAAAGAGTTTGCTTTTATGAAG.............................................................................GCACTAAAAGAATTTTTATTTCCTGTTCCTCAGGCTGTGGATTGCAACCGACATTGTGTGATTATGTCACTTGTCCCATGCTATCCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAGGTTAAGGAGCTGCAAAACCCATATGTGGTTTTTGAAACAATCATCTCTGCTGTTATTCGTTTGGCAGAACACGGGCTTATTCACTGTGATTTTAATGAATTTAACATAATG...............................................................................................................................................................................................................................ATTGATGATGATGAAAAGGTCACCATAATTGATTTCCCACTAATGGTGTCAGTCTCTCATCCTAACGCTCAGAT.....................................................................................................................................................GTACTTTGATCGTGATGTGGAGTGCATCTATAAGTTCTTTGCAAAGCG.............................................................................................................................................................................................................................GCACAATATGTCCTTTGATGAAAATGAAAATGATTCTGATGGTTTGGAGGGTGACATACATGAAGTTGGTCGCCCCCAATTTTCTGAAATAAACAAGAACAGCGGGTTCTTGGACAAAAAACTTGCTGCCAGTGGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392698" ref_strand="-" ref_description="SGN-E392698 [TUS-36-L9](-)">
      <seq>gggcccccccctacaattggctgtacttgtcccgacttgctgctttgaaagagtttgcttttatgaaggcactagaagaacatggatttcctgttcctcaggctgtggattgcaaccgacattgtgtgattatgtcacttgtcccaggctatccacttgtgcaggttagggagctgcaaaacccagatgtggtttttgaaacaatcatcgctgctgttattcgtttggcagaacacgggcttattcactgtgattttaatgaatttaacataatgattgatgatgatgaaaaggtcaccataattgatttcccacaaatggtgtcagtctctcatcctaacgctcagatgtactttgatcgtgatgtggattgtttttataagttctttgcaaagcggtacaatatgtcgtttgatgaaaatgaaaatgattctgatggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="34594" stop="37011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34894" g_stop="34951" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="68" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34952" i_stop="35028" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35029" g_stop="35117" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="157" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35118" i_stop="35833" i_length="716">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35834" g_stop="35951" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="275" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35952" i_stop="36174" i_length="223">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36175" g_stop="36248" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="349" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36249" i_stop="36397" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36398" g_stop="36445" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="397" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36446" i_stop="36666" i_length="221">
            <donor d_prob="0.870" d_score="0.92"/>
            <acceptor a_prob="0.866" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36667" g_stop="36711" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="442" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E392698" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392698" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34894" e_stop="34951"/>
          <exon e_start="35029" e_stop="35117"/>
          <exon e_start="35834" e_stop="35951"/>
          <exon e_start="36175" e_stop="36248"/>
          <exon e_start="36398" e_stop="36445"/>
          <exon e_start="36667" e_stop="36711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATTGGCTGTACTTGTCCCGACTTGCTGCTTTGAAAGAGTTTGCTTTTATGAAGGTAAGTGCAGCTCTCTAATTTGCCGTATCGTCTTTGAATTAGGAGATTTGTTTGATATTAAACACTTGTGTAAACAGGCACTAGAAGAACATGGATTTCCTGTTCCTCAGGCTGTGGATTGCAACCGACATTGTGTGATTATGTCACTTGTCCCAGGCTATCCACTGTAAGTATTTCACAAATATAGTAACGATGGAGATTATCTGTTATACTAGAGTTTCCTAATATCTCTGAACTTCTGTAAACTTGGTGTTATTACTTAATTACGTACCAGTACATATGCAACATTTTTAGTCTATACCTAGCTTTATAATATTAGCCATAAGGATGCGAGAAGAGTTGTTTATTTCTAATCACCATCATAACCTGGAAAATATAGTTTTTATGGTATTTGAGGTTTAGTATAACCATAATTTTTCAGTAATTGAGTTTTTGTATAGTAGTAATTGGATTCTCCATAGCTTGCTTCATAGCAGTTCTCCTATCATGTTCTGTGTTTTTCCTTTCTTAAGTATGTTAGCTTCATCTACCTTTGTATGATCAAATTATGTGGCTAAACTGACCTTTGACCTTAACTAAATTGGTAATGTTAATTTTTCTTCCCAAATACTATTTAGGGATTCTCGCTCCCGCATAAACCCTATAATCTTGTCTAATCTATTTTGTGCTTATAGCAACAACTCATTGTAATAAATGGAATGCTTGGATACTCTATTAATAGCATTATGAGAATTATGTTAATCTGTAAAAGAAATTGTTATCTATGAACTTAACCTTAGAAAAAGCATATTCTTGATCTTCGGCTAACAGTGCATTATTATTGTATTTTTAGTTTCTTCCTAGAAATAGTGGCTGTAGAACTTATAGAAATGGTTATAATAGTGTGCAGGTTAGGGAGCTGCAAAACCCAGATGTGGTTTTTGAAACAATCATCGCTGCTGTTATTCGTTTGGCAGAACACGGGCTTATTCACTGTGATTTTAATGAATTTAACATAATGGTATCTTCTATTCCTTCTTTGATTTATTTAAGGTTATCATTATATTTAACTGCTATATTTTTTTGTTCCTTACGAGCTTGGTTCGCCAGTGTGCAAGTGGAATATGTTCTTCCATTTTTCATTTCTTTGCCCGTTTCAATTGCTCTGAATTTCTTTGTATAGGCTTATATTAGACCTGTTCGTCAGTTTGCTGATAATTCTTATGTACCTTATTGGATTACAGATTGATGATGATGAAAAGGTCACCATAATTGATTTCCCACAAATGGTGTCAGTCTCTCATCCTAACGCTCAGATGTAAGATATTTTCCCATCTTATTCCATCTAAACAGTCTTTCAGTATTCTGTTTTTCTTGTTAGTTCCCTCCCTTCATCTGGACCACTGTGTGCTATAGATTGTGCTCTTAGAAAAATTGCTGTCCCTGATACAAGTTTCTACATGTTAGGTACTTTGATCGTGATGTGGAGTGCATCTATAAGTTCTTTGCAAAGCGGTTAGTGAATTTACTCCTTTCTGTTTATTTGGAGAAGTCCATCTGTTTGACCAAGACGCTACCTGTGAAGACTTCTTCCACTTTATGATGTATTTTTGGGACTCATCTTTTGGAGTCACTTTTTTATCCTGATAACTATTTTGCTGCTACATATGAATTTGAGACGCTGAATTTTCCTTTGAAGCGTGAGCTCATAGTTTATCTCTCTTACCTATCTTTAGGTACAATATGTCCTTTGATGAAAATGAAAATGATTCTGATGGTTT</genome_strand>
        <mrna_strand>CTACAATTGGCTGTACTTGTCCCGACTTGCTGCTTTGAAAGAGTTTGCTTTTATGAAG.............................................................................GCACTAGAAGAACATGGATTTCCTGTTCCTCAGGCTGTGGATTGCAACCGACATTGTGTGATTATGTCACTTGTCCCAGGCTATCCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAGGTTAGGGAGCTGCAAAACCCAGATGTGGTTTTTGAAACAATCATCGCTGCTGTTATTCGTTTGGCAGAACACGGGCTTATTCACTGTGATTTTAATGAATTTAACATAATG...............................................................................................................................................................................................................................ATTGATGATGATGAAAAGGTCACCATAATTGATTTCCCACAAATGGTGTCAGTCTCTCATCCTAACGCTCAGAT.....................................................................................................................................................GTACTTTGATCGTGATGTGGATTGTTTTTATAAGTTCTTTGCAAAGCG.............................................................................................................................................................................................................................GTACAATATGTCGTTTGATGAAAATGAAAATGATTCTGATGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732321" ref_strand="+" ref_description="SGN-E732321 [LB01DD11]">
      <seq>cggtcaaagaacttgctgccagtggttttacgagaaaggatcaagatgagcttgaaaagttgattgagggagaacttgaaaatcattcagattctgacgatgaaggaactgctgatgaagaagatgaagaagacattaacaacacaaacgtcaagcagctcgaatccttggacttggcgaaggaagacgttaatcatcaaactggggatgataagcacgacgataaccatcaagttggggatgaaaatgatcccgaggaagaggaagaggccgagtctgaagatgatcctgaactagagaaaagcctgagcaagcaaaggaagaaggctatccaggctgcccatcggggcaagaggaactttgcctcgaggaatacatacaaagacaaaggtgggaaatcctcacagaactcaaaggtccataagcaattgagtggttggtgaagtatacactattaaagaatatgcaatccagtgtctttgaaggccaatccacggaatttcttttgcgcgaaggtgttgaagagaatatcatcatataaactagctatcgataagttactgagtgattcagtttcgactcagatatatacattgtcctaaatgtctgtctggtgtatatttaaaattttggtagcatgtttggcagaacatataggctcaagattgttaaatgtgtatttgttgtttactaatgattataaatcaagaacagctatgtagttgtgaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="36478" stop="38912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36777" g_stop="36835" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36836" i_stop="37580" i_length="745">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37581" g_stop="37703" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="182" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37704" i_stop="38061" i_length="358">
            <donor d_prob="0.506" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38062" g_stop="38612" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="733" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E732321" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36777" e_stop="36835"/>
          <exon e_start="37581" e_stop="37703"/>
          <exon e_start="38062" e_stop="38612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACAAAGAACTTGCTGCCAGTGGTTTTACGAGAAAGGATCAAGATGAGCTTGAAAAGGTACAATCAAATGGCTCAATTGCAACTAAAATTTGTGAACCTTACTAGAAGAAGAAACTTTCTGGATATAGCCTTATTCCAGTAAGAAGGGAAACAAATAAAATAAACTATGTTTAGATTGAATGACTTCTTTTGGAACCCCAATGAAGCTGACTCTCGTATTATTCTGGAAACTTAACTTTGAATATTGCGACTGTGTGACAAATGTGATGGTATTTGTTGCTGAGTAACTTAGATATTCATATTCTATTGCCTTCTCATGAACGAAATAGACTGGCAACAAAAGAGAAGGGGAAAAAAGTTTGTCTTTTAAGCTTGCAGCTTGACTTTTTGGGAATAAGTTTTTTCTTTTCCTTTTATGGTATGTTGTTCCTATGTCATGGTTATTACACAGTCATGGGGATTTCTGATTCTACCTTTCCGTGCAACCCCGCAACTTTACTTATTTTAACCAAAATCTTTGGGGCTAGGACACTTATATTTGAAGGAGGTAAGCTAACTTAAAGGCATGAAGTTGCCGATTTTTGATTCTTCCTTTCAGAAAACCTGGGGGACTGGTTTTGTGGGATGTGCTGCAGTGCTGTGAGGACACTTTTTATGGCCCTGGCACATGATTACCTCGACATTGTCTTTCTTCTTGTGTCAAACATAGAAAAACTTATCGCAGCTTTGTGATATCCTGCCATTTTGAATTTGAATCGCCTGTTGTACTCGACTTTGTAGTTATTCTTTACTTTGTTTGCAGTTGATTGAGGGAGAACTTGAAAATCATTCAGATTCTGACGATGAAGGAACTGCTGATGAAGAAGATGAAGAAGACATTAACAACACAAACGTCAAGCAGCTCGAATCCTTGGACTTGGCGAAGGTAATTCATCTTTCTCCACTAAGAAACAATGAGAGAAGAGGCAAAGACGTAGTGATCTCACTACAGATTAAAGTCATAACATGAAATGTTTCTGGTTCGTTTGGTTGATACGAGAATTTGGGACCCAATTCTCTTACACTATTCTTTATTATTTGAACATAGTAATGTGCTACTTTAATATGAATTTCACCCGAAATATGGAAACATAAGATGAGCCTCAAACAGTTCTCGTATAAATCTAAATAAAAAACGAGATGACAACTGATGAACCATTTTTCTACATACTACGCCTTTGCTGTAAAGCAAAAGAGAACATTTCCTGTGTCTCTTGGCATTTACTAGAGATATTCTCTTGCAGGAAGACGTTAATCATCAAACTGGGGATGATAAGCACGACGATAACCATCAAGTTGGGGATGAAAATGATCCCGAGGAAGAGGAAGAGGCCGAGTCTGAAGATGATCCTGAACTAGAGAAAAGCCTGAGCAAGCAAAGGAAGAAGGCTATCCAGGCTGCCCATCGGGGCAAGAGGAACTTTGCCTCGAGGAATACATACAAAGACAAAGGTGGGAAATCCTCACAGAACTCAAAGGTCCATAAGCAATTGAGTGGTTGGTGAAGTATACACTATTAAAGAATATGCAATCCAGTGTCTTTGAAGGCCAATCCACGGAATTTCTTTTGCGCGAAGGTGTTGAAGAGAATATCATCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGATATATACATTGTCCTAAATGTCTGTCTGGTGTATATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGTATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAAC</genome_strand>
        <mrna_strand>CGGTCAAAGAACTTGCTGCCAGTGGTTTTACGAGAAAGGATCAAGATGAGCTTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGAGGGAGAACTTGAAAATCATTCAGATTCTGACGATGAAGGAACTGCTGATGAAGAAGATGAAGAAGACATTAACAACACAAACGTCAAGCAGCTCGAATCCTTGGACTTGGCGAAG......................................................................................................................................................................................................................................................................................................................................................................GAAGACGTTAATCATCAAACTGGGGATGATAAGCACGACGATAACCATCAAGTTGGGGATGAAAATGATCCCGAGGAAGAGGAAGAGGCCGAGTCTGAAGATGATCCTGAACTAGAGAAAAGCCTGAGCAAGCAAAGGAAGAAGGCTATCCAGGCTGCCCATCGGGGCAAGAGGAACTTTGCCTCGAGGAATACATACAAAGACAAAGGTGGGAAATCCTCACAGAACTCAAAGGTCCATAAGCAATTGAGTGGTTGGTGAAGTATACACTATTAAAGAATATGCAATCCAGTGTCTTTGAAGGCCAATCCACGGAATTTCTTTTGCGCGAAGGTGTTGAAGAGAATATCATCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGATATATACATTGTCCTAAATGTCTGTCTGGTGTATATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGTATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244674" ref_strand="-" ref_description="SGN-E244674 [cLED-38-O19]">
      <seq>aatcatcaaactggggatgataagctcgacgataaccatcaagttggggatgaaaatgatcccgagcaagaggaagaggccgagtctgaagatgatcctgaactagagaaaagcctgagcaagcaaaggaagaaggctatccaggctgcccatcggggcaagaggaactttgcctcgaggaatacatacaaaggcaaaggtgggaaatcctcacagaactcaaaggtccataagcaattgagtggttggtgaagtatacactattaaagaatatgcaatccagtgtctttgaaggccaatccacggaatttcttttgcgcgaaggtgttgaagagaatatcatcatataaactagctatcgataagttactgagtgattcagtttcgactcagatatatacattgtcctaaatgtctgtctggtgtatatttaaaattttggtagcatgtttggcagaacatataggctcaagattgttaaatgtgtatttgttgtttactaatgattataaatcaagaacagctatgtagttgtgaagaactacttcagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="37771" stop="38923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38071" g_stop="38622" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="567"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E244674" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244674" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38071" e_stop="38622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATCAAACTGGGGATGATAAGCACGACGATAACCATCAAGTTGGGGATGAAAATGATCCCGAGGAAGAGGAAGAGGCCGAGTCTGAAGATGATCCTGAACTAGAGAAAAGCCTGAGCAAGCAAAGGAAGAAGGCTATCCAGGCTGCCCATCGGGGCAAGAGGAACTTTGCCTCGAGGAATACATACAAAGACAAAGGTGGGAAATCCTCACAGAACTCAAAGGTCCATAAGCAATTGAGTGGTTGGTGAAGTATACACTATTAAAGAATATGCAATCCAGTGTCTTTGAAGGCCAATCCACGGAATTTCTTTTGCGCGAAGGTGTTGAAGAGAATATCATCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGATATATACATTGTCCTAAATGTCTGTCTGGTGTATATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGTATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAACTACTTCAGAT</genome_strand>
        <mrna_strand>AATCATCAAACTGGGGATGATAAGCTCGACGATAACCATCAAGTTGGGGATGAAAATGATCCCGAGCAAGAGGAAGAGGCCGAGTCTGAAGATGATCCTGAACTAGAGAAAAGCCTGAGCAAGCAAAGGAAGAAGGCTATCCAGGCTGCCCATCGGGGCAAGAGGAACTTTGCCTCGAGGAATACATACAAAGGCAAAGGTGGGAAATCCTCACAGAACTCAAAGGTCCATAAGCAATTGAGTGGTTGGTGAAGTATACACTATTAAAGAATATGCAATCCAGTGTCTTTGAAGGCCAATCCACGGAATTTCTTTTGCGCGAAGGTGTTGAAGAGAATATCATCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGATATATACATTGTCCTAAATGTCTGTCTGGTGTATATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGTATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAACTACTTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392699" ref_strand="-" ref_description="SGN-E392699 [TUS-36-L9]">
      <seq>ccatcaagttggggatgaaaatgatcccgaggaagaggaagaggccgagtctgaagatgatcctgaactagagaaaagcctgagcaagcaaaggaagaaggctatccaggctgcccatcggggcaagaggaactttgcctcgaggaatacatacaaagacaaaggtgggaaatcctcacagaactcaaaggtccataagcaattgagtggttggtgaagtatacactattaaagaatatgcaatccagtgtctttgaaggccaatccacggaatttcttttgcgcgaaggtgttgaagagaatatcatcatataaactagctatcgataagttactgagtgattcagtttcgactcagatatatacattgtcctaaatgtctgtctggtgtatatttaaaattttggtagcatgtttggcagaacatataggctcaagattgttaaatgtgtatttgttgtttactaatgattataaatcaagaacagctatgtagttgtgaagaactacttcagataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="37806" stop="38923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38106" g_stop="38622" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="533"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E392699" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392699" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38106" e_stop="38622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAAGTTGGGGATGAAAATGATCCCGAGGAAGAGGAAGAGGCCGAGTCTGAAGATGATCCTGAACTAGAGAAAAGCCTGAGCAAGCAAAGGAAGAAGGCTATCCAGGCTGCCCATCGGGGCAAGAGGAACTTTGCCTCGAGGAATACATACAAAGACAAAGGTGGGAAATCCTCACAGAACTCAAAGGTCCATAAGCAATTGAGTGGTTGGTGAAGTATACACTATTAAAGAATATGCAATCCAGTGTCTTTGAAGGCCAATCCACGGAATTTCTTTTGCGCGAAGGTGTTGAAGAGAATATCATCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGATATATACATTGTCCTAAATGTCTGTCTGGTGTATATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGTATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAACTACTTCAGAT</genome_strand>
        <mrna_strand>CCATCAAGTTGGGGATGAAAATGATCCCGAGGAAGAGGAAGAGGCCGAGTCTGAAGATGATCCTGAACTAGAGAAAAGCCTGAGCAAGCAAAGGAAGAAGGCTATCCAGGCTGCCCATCGGGGCAAGAGGAACTTTGCCTCGAGGAATACATACAAAGACAAAGGTGGGAAATCCTCACAGAACTCAAAGGTCCATAAGCAATTGAGTGGTTGGTGAAGTATACACTATTAAAGAATATGCAATCCAGTGTCTTTGAAGGCCAATCCACGGAATTTCTTTTGCGCGAAGGTGTTGAAGAGAATATCATCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGATATATACATTGTCCTAAATGTCTGTCTGGTGTATATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGTATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAACTACTTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228206" ref_strand="-" ref_description="SGN-E228206 [cLED-2-E12]">
      <seq>atatcttcatataaactagctatcgataagttactgagtgattcagtttcgactcagaaatatacattgtcctaaatgtctgtctggtgtaaatttaaaattttggtagcatgtttggcagaacatataggctcaagattgttaaatgtgaatttgttgtttactaatgattataaatcaagaacagctatgtagttgtgaagaactacttcagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="38107" stop="38923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38407" g_stop="38622" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="217" polyA_stop="231"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E228206" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228206" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38407" e_stop="38622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCATCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGATATATACATTGTCCTAAATGTCTGTCTGGTGTATATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGTATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAACTACTTCAGAT</genome_strand>
        <mrna_strand>ATATCTTCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGAAATATACATTGTCCTAAATGTCTGTCTGGTGTAAATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGAATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAACTACTTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705650" ref_strand="+" ref_description="SGN-E705650 [FA27DA07]">
      <seq>gagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacgtgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtggtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcggtggaccacttgcagctgttatgtcaacaccactacgtctagtcaccaccaacgtttatgggatggtagcaacagctgttggggtctattgtgccagtcgctatgcagctgatattggtatgcggagggatgtgatgaaagtatctgcagaagatctaacaacaaggctaacaactggcttgctccgggttgttgaacctagtctcgcagttttgccacctacgactagctagtatcatttcttgatatgtaataacgcgctatagagtcggaaagtgagctttctttttaatatacatgggagcttctagctatatgtcttgaggcttctgtatctgttgtactttattatgtgttgttttgcctccaaaagaagttgtaatgtgattgcagatttgtgatgtttaatctcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="39829" stop="38517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39529" g_stop="38817" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E705650" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39529" e_stop="38817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTAATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTTCTGTATCTGTTGTACTTTATTATGTGTTGTTTTGCCTCCAAAAGAAGTCGTAATGTGATTGCAGATTTGTGATGTTTAATCTCAGAT</genome_strand>
        <mrna_strand>GAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACGTGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTAATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTTCTGTATCTGTTGTACTTTATTATGTGTTGTTTTGCCTCCAAAAGAAGTTGTAATGTGATTGCAGATTTGTGATGTTTAATCTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286093" ref_strand="+" ref_description="SGN-E286093 [cLES-13-M2]">
      <seq>ttaaacatcacaaatctgcaatcacattacgacttcttttggaggcaaaacaacacataataaagtacaacagatacagaagcctcaagacatatagctagaagctcccatgtatattaaaaagaaagctcactttccgactctatagcgcgttattacatatcaagaaatgatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="38525" stop="39302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38825" g_stop="39002" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E286093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38825" e_stop="39002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATCACAAATCTGCAATCACATTACGACTTCTTTTGGAGGCAAAACAACACATAATAAAGTACAACAGATACAGAAGCCTCAAGACATATAGCTAGAAGCTCCCATGTATATTAAAAAGAAAGCTCACTTTCCGACTCTATAGCGCGTTATTACATATCAAGAAATGATACTA</genome_strand>
        <mrna_strand>TTAAACATCACAAATCTGCAATCACATTACGACTTCTTTTGGAGGCAAAACAACACATAATAAAGTACAACAGATACAGAAGCCTCAAGACATATAGCTAGAAGCTCCCATGTATATTAAAAAGAAAGCTCACTTTCCGACTCTATAGCGCGTTATTACATATCAAGAAATGATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352674" ref_strand="+" ref_description="SGN-E352674 [cTOS-11-C14]">
      <seq>tcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtggtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcggtggaccacttgcagctgttatgtcaacaccactacgtctagtcaccaccaacgtttatgggatggtagcaacagctgttggggtctattgtgccagtcgctatgcagctgatattggtatgcggagggatgtgatgaaagtatctgcagaagatctaacaacaaggctaacaactggcttgctccgggttgttgaacctagtctcgcagttttgccacctacgactagctagtatcatttcttgatatgtaataacgcgctatagagtcggaaagtgagctttctttttaatatacatgggagcttctagctatatgtcttgaggcttctgtatctgttgtactttattatgtgttgttttgcctccaaaagaagtcgtaatgtgattgcagatttgtgatgtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="39707" stop="38525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39407" g_stop="38826" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="583" polyA_stop="595"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E352674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39407" e_stop="38826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTAATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTTCTGTATCTGTTGTACTTTATTATGTGTTGTTTTGCCTCCAAAAGAAGTCGTAATGTGATTGCAGATTTGTGATGTTTA</genome_strand>
        <mrna_strand>TCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTAATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTTCTGTATCTGTTGTACTTTATTATGTGTTGTTTTGCCTCCAAAAGAAGTCGTAATGTGATTGCAGATTTGTGATGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392624" ref_strand="+" ref_description="SGN-E392624 [TUS-35-J24](-)">
      <seq>tcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaacgtgctcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtggtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcggtggaccacttgcagctgttatgtcaacaccactacgtctagtcaccaccaacgtttatgggatggtagcaacagctgttggggtctattgtgccagtcgctatgcagctgatattggtatgcggagggatgtgatgaaagtatctgcagaagatctaacaacaaggctaacaactggcttgctccgggttgttgaacctagtctcgcagttttgccacctacgactagctagtatcatttcttgatatgtaataacgcgctatagagtcggaaagtgagctttctttttaatatacatgggagcttctagctatatgtcttgaggcttctgtatctgttgtacttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="39748" stop="38585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39448" g_stop="38886" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="581"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E392624" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39448" e_stop="38886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTAATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTTCTGTATCTGTTGTACTTT</genome_strand>
        <mrna_strand>TCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAACGTGCTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTAATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTTCTGTATCTGTTGTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720589" ref_strand="+" ref_description="SGN-E720589 [FC11BA03]">
      <seq>ggatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacgtgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtggtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcggtggaccacttgcagctgttatgtcaacaccactacgtctagtcaccaccaacgtttatgggatggtagcaacagctgttggggtctattgtgccagtcgctatgcagctgatattggtatgcggagggatgtgatgaaagtatctgcagaagatctaacaacaaggctaacaactggcttgctccgggttgttgaacctagtctcgcagttttgccacctacgactagctagtatcatttcttgatatgtaataacgcgctatagagtcggaaagtgagctttcttttttatatacatgggagcttctagctatatgtcttgaggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42349" stop="38604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42050" g_stop="41979" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="146" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="38904" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="925" r_length="779" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E720589" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42050" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="38904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTAATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTT</genome_strand>
        <mrna_strand>GGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACGTGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTTATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702479" ref_strand="+" ref_description="SGN-E702479 [FA18DD04]">
      <seq>cttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacgtgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtggtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcggtggaccacttgcagctgttatgtcaacaccactacgtctagtcaccaccaacgtttatgggatggtagcaacagctgttggggtctattgtgccagtcgctatgcagctgatattggtatgcggagggatgtgatgaaagtatctgcagaagatctaacaacaaggctaacaactggcttgctccgggttgttgaacctagtctcgcagttttgccacctacgactagctagtatcatttcttgatatgtaataacgcgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42325" stop="38669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42025" g_stop="41979" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="121" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="38969" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="835" r_length="714" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E702479" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42025" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="38969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTAT</genome_strand>
        <mrna_strand>CTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACGTGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287760" ref_strand="+" ref_description="SGN-E287760 [cLES-19-C21]">
      <seq>tttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtggtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcggtggaccacttgcagctgttatgtcaacaccactacgtctagtcaccaccaacgtttatgggatggtagcaacagctgttggggtctattgtgccagtcgctatgcagctgatattggtatgcggagggatgtgatgaaagtatctgcagaagatctaacaacaaggctaacaactggcttgctccgggttgttgaacctagtctcgcagttttgccacctacgactagctagtatcatttcttgatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="39856" stop="38682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39556" g_stop="38982" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E287760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39556" e_stop="38982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGT</genome_strand>
        <mrna_strand>TTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262359" ref_strand="+" ref_description="SGN-E262359 [cLEG-56-A23]">
      <seq>tttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtggtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcggtggaccacttgcagctgttatgtcaacaccactacgtctagtcaccaccaacgtttatgggatggtagcaacagctgttggggtctattgtgccagtcgctatgcagctgatattggtatgcggagggatgtgatgaaagtatctgcagaagatctaacaacaaggctaacactggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42341" stop="38753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42041" g_stop="41979" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="137" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39053" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="766" r_length="629" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E262359" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42041" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCT</genome_strand>
        <mrna_strand>TTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAAC-ACTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333789" ref_strand="+" ref_description="SGN-E333789 [cTOD-22-P11]">
      <seq>ttttgttcttgatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtggtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcggtggaccacttgcagctgttatgtcaacaccactacgtctagtcaccaccaacgtttatgggatggtagcaacagctgttggggtctattgtgccagtcgctatgcagctgatattggtatgcggagggatgtgatgaaagtatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42359" stop="38785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42059" g_stop="41979" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="155" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39085" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="753" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E333789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42059" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGC</genome_strand>
        <mrna_strand>TTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704670" ref_strand="+" ref_description="SGN-E704670 [FA24DG06]">
      <seq>catttacttaataggcaaaaacttttgttcttgatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacgtgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtcgtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcggcggaccacttgcagctgttatgtcaacaccactccttctagtcaccaccaacgtttatgggatggtagcaacagctgttggggtctattgtgccagtcgctatgcagctgatattggtatgcggaaggatgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42381" stop="38797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42081" g_stop="41979" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="177" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39097" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="763" r_length="586" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E704670" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42081" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTACTTAATAGGCAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGAT</genome_strand>
        <mrna_strand>CATTTACTTAATAGGCAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACGTGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTCGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGCGGACCACTTGCAGCTGTTATGTCAACACCACTCCTTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAAGGATGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392375" ref_strand="+" ref_description="SGN-E392375 [TUS-35-J24]">
      <seq>cttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgagattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtggtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcggtggaccacttgcagctgttatgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42325" stop="38906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42025" g_stop="41979" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="121" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39206" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="598" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E392375" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42025" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAA</genome_strand>
        <mrna_strand>CTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGAGATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362770" ref_strand="+" ref_description="SGN-E362770 [cLPP-2-I3]">
      <seq>tgtttatccaaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgctcatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcactcccccttcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcggtttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactgtaagacaggactactcgtggtagatgatagtacaatgggacaaagtggacaagcagtgtctataatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42321" stop="38933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42021" g_stop="41979" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="0.95"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="118" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39233" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="568" r_length="450" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E362770" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42021" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATCC-AAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCG</genome_strand>
        <mrna_strand>TGTTTATCCAAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCTCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACTCCCCCTTCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGGTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTGTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256780" ref_strand="+" ref_description="SGN-E256780 [cLEG-40-M17]">
      <seq>gttttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggacttcgccatctactctaagacaggactactcgtggttagatgatagtacaatggggacaaagttggacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42342" stop="38949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42043" g_stop="41979" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="139" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39249" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="576" r_length="437" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E256780" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42043" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGG-TAGATGATAGTACAAT-GGGACAAAG-TGGACAA</genome_strand>
        <mrna_strand>GTTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTTAGATGATAGTACAATGGGGACAAAGTTGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204139" ref_strand="+" ref_description="SGN-E204139 [cLEC-13-A23]">
      <seq>ttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactaccttcttacaaatggctttggactgtacaatgtgttcaagaacaactgtgaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42324" stop="39014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42024" g_stop="41979" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="120" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39314" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="489" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E204139" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42024" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACT</genome_strand>
        <mrna_strand>TTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTTCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240374" ref_strand="+" ref_description="SGN-E240374 [cLED-25-O6]">
      <seq>aaaaacttttgttcttgatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctncttacaaatggctttggactgtacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42365" stop="39039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42065" g_stop="41979" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="161" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39339" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="505" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E240374" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42065" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAAT</genome_strand>
        <mrna_strand>AAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTNCTTACAAATGGCTTTGGACTGTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303118" ref_strand="+" ref_description="SGN-E303118 [cLEX-5-K9]">
      <seq>ctatcatttacttaataggcaaaaacttttgttcttgatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacctccttacaaatggctttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42385" stop="39047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42085" g_stop="41979" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="181" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39347" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="517" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E303118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42085" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCATTTACTTAATAGGCAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGAC</genome_strand>
        <mrna_strand>CTATCATTTACTTAATAGGCAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280448" ref_strand="+" ref_description="SGN-E280448 [cLER-1-L24]">
      <seq>tttgttcttgatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtagtccatcgagcaaactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42358" stop="39068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42058" g_stop="41979" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="154" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39368" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="469" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E280448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42058" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACC</genome_strand>
        <mrna_strand>TTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248245" ref_strand="+" ref_description="SGN-E248245 [cLEF-55-K3]">
      <seq>caaaaacttttgttcttgatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42366" stop="39086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42066" g_stop="41979" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="162" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39386" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="459" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E248245" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42066" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAG</genome_strand>
        <mrna_strand>CAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280442" ref_strand="+" ref_description="SGN-E280442 [cLER-1-J24]">
      <seq>tgagttcttgatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgacattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42355" stop="39087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42058" g_stop="41979" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="154" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39387" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="450" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E280442" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42058" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTA</genome_strand>
        <mrna_strand>TGAGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275234" ref_strand="+" ref_description="SGN-E275234 [cLEN-9-C24]">
      <seq>aaaaacttttgttcttgatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgctgtaactcctgctatcttcctcgcaaaagcacgtggaggaacatgcactcttgcagtctcggatccagatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42365" stop="39092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42065" g_stop="41979" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="161" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39392" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="452" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E275234" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42065" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACA</genome_strand>
        <mrna_strand>AAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341095" ref_strand="+" ref_description="SGN-E341095 [cTOE-22-I14]">
      <seq>caaaaacttttgttcttgatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtttgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggactgctttcttgctggaggtatcctctatcgctttgaatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42366" stop="39165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42066" g_stop="41979" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="162" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39465" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="380" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E341095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42066" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCT</genome_strand>
        <mrna_strand>CAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301712" ref_strand="+" ref_description="SGN-E301712 [cLEX-9-D2]">
      <seq>ctaattaaatggatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtatgaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctactgttccttgtactgtctgcaccccaccatcagatggtcacggagtagtctcgtcatgtttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42174" stop="39206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41873" g_stop="41801" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="81" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39682" g_stop="39506" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="258" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E301712" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41873" e_stop="41801"/>
          <exon e_start="39682" e_stop="39506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACT</genome_strand>
        <mrna_strand>ATGGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTATGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTCTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301718" ref_strand="+" ref_description="SGN-E301718 [cLEX-9-F2]">
      <seq>cgtttctgtgtctatcatttacttaataggcaaaaacttttgttcttgatcaaattttgattcatcatatccttctgtttatccaaaaaaattaagaaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcatattttggtaagttcaattccaaatcgatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42396" stop="39271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42096" g_stop="41979" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="192" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39571" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="304" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E301718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42096" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTCTGTGTCTATCATTTACTTAATAGGCAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTAC</genome_strand>
        <mrna_strand>CGTTTCTGTGTCTATCATTTACTTAATAGGCAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280808" ref_strand="-" ref_description="SGN-E280808 [cLEL-6-N13](-)">
      <seq>gcacgagcaaaaacttttgtttttgatcaaattttgattcatcatatgcttgtgtttatccaaaaaaattaagcaatggggttgctttctaatagaattgatagaagcagcctcaaacctggagatcatatttattcttggcgtactgcttatatttatgcccatcatggtatctatgttggggataataaagtcattcacttcacaagacgtggtcaagaagtaggaactggaaccattctggatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="42367" stop="39302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42073" g_stop="41979" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104">
            <donor d_prob="0.454" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41874" g_stop="41801" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="169" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39682" g_stop="39602" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="250" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E280808" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280808" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42073" e_stop="41979"/>
          <exon e_start="41874" e_stop="41801"/>
          <exon e_start="39682" e_stop="39602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAGGCAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAGGTAATCTGATTTTTTCCAATTTTTTTCAATTTTTTTGGTGGGGTTTTGAAGTTTTTACTGATTTATATCTTTGTTTTGTTCGTTTTTGGTGAAATGATTGACAGAATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATGGTTAGAATCTGAAATTTTCTGGTTTAATTTGATATCTTAATGTTGATGTAGAAAAATAAAAACTTGTTTTTTATGTTAAATAATGTTGATTTGAATACATGAACATTAAAAAAAGGATTTAATCTGATGTTAAATGTTGATGTTAAAAAAAAAAAAAAACTTGTTCTTTATGGTAAATAATGTTTGATTGGATATGTATCCTAGGGTGTAGAACCATGAGGTCTCGGGTTCAAATTTCGATTTTTTCTTATTTGTTAACTTGTTGTTGGTAGATTTATTGATAGCATTTAAGGTCGGTGTAGTAAAAAAACTTGTTTTTTTATGGTAAATAATGTTTAATTGGATATGTACCTATTGGTGTGGAACCATGAGGTGTCTGGTTCAAATTGCAAAGGATCTTTTCCCCTTTCTATTGTTGGTGGGAGGGAGCGGGTATGAGGTATCTTGGTTCATTATGGAAATGAGATAATACATGGTGTTGTTCTAGATTTGTTGATGGCATTTAATGTTGATGCGGAGAACCATGAGGTCTCGGGTTCAGATTCCAAGTGATTTTTTCTTATCTGTTAAGTTGTTGGTGGTGGGAGGCGGCAGGTGTTTCGGAGAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTATTGATAGCATTTAAGGTTGGTGTAGTAAAAAAACTTGTTCTTTATGGTAGATAATGTTTAATTGGATATGTACCTATGGATGCGGAACCATGAGGTGTCTGGTTCAAATCGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTGGTGGCAGGTGCGAGGTATCTCGGTTAATTATGGAAATGAGATAGTACATGGGGTTGTTCTAGATTTATTAATAGCATTTAAGGTCGCTGTAGTTAAAAAAAATTGATCTTTATGGTAAATAATGTCCAAGTGGATATGTACCTATTTGTGTGGAACCATGAGGTGTCTGGTTCAAATCGTAAGTGATTTTTCACCTATTTGTAACTTGGTGGTGGTGGGAGGTGGCAGCTATGAGGTATGTTGGCGAATTATGGAAATGAGATAATACATGGAGTTGTTATAGATTTGTTGATAGCATTTAATGTTGATGCAGAAAAAACGTGTTTTTTATGGTAAATAATGTATAGTTGGATATGTACCTATGGGTGTGGAACCATGAGGTGTCTGGTTCAAACTGCAAGTGATTTTTTCCCCGTTTGTAACTTGTTGGTAGGAGGTGGCAGGTATGAGGTATCTCGGTTAATTATGGAAATGAGATAATACATGGGGTTGTTCTAGATTTGTTGATAGCATTGAATTTTCAAGGCAATTGTGTTTTCTTTTTGAATTGTGTCTGTGAGTATTTAGATTTTGCTAAGTCTCTGTTGTTTCTATGTTTTTAGACTATAACTAGTTAAATTGATAAAAACTTTGTTCAAGTACGAAAACTTGGAATCTGTTCTTTTCATTTTGTCTAAGCCTGGTAGATAGATTTTTGTGGTACATGTGTCGGTGGGAGGTAGTAGGTACCTCTTGTGGAATGCGCGGTTATCATAAGCAATTAGGAACGAAATGCGTTATGTGAGTGATCCATTTCTTTGATCAAGTAATTCTCAGGGGTTACCTTTTTCTTGACTATGTGCTTAGTGATAGACCTTAGAGGGCTTTGCCAATATGGGGTGTAGCTCATTCACTTAATAAAGCAGTTAATTATAGAACGGAAGATGATCCACTGATGTTATTCGTAAAATCCTGTAGTAATTTGCTTGCTACAGTGAAGGGTTATCGGTCTTTCTGTAAGTTCAAGGGAATTGGCTTGTTGCCAGTATTCACATTAGTCTAAAGAAGATTTGAAGTGCATAGATAATGTTATCGAAACGTTTGCGCTTTGGCATGTTATTTAAGTTTGATCTTGTTTATGCTTCTGAATCACTTCGACCATCTATCCTTACCCATGAGGTTCCAACATTTTCTCCTTAATTGACCTAGGAGTTGTTCCCGGGCATCCTCAAAAAAAAGGTTATTATACACCCCAACCCCATCCCTTGTTTCCTGATTACCTTGATTAATAAACTAGAGAAAACAAAGATTATTTTGTAATAATATTGGATATGCCTAAATAACAGGTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATA</genome_strand>
        <mrna_strand>GCACGAGCAAAAACTTTTGTTTTTGATCAAATTTTGATTCATCATATGCTTGTGTTTATCCAAAAAAATTAAGCAATGGGGTTGCTTTCTAATAG........................................................................................................AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281575" ref_strand="+" ref_description="SGN-E281575 [cLEL-1-L12](-)">
      <seq>agttttcgagctccttagctctgtttctgatgagttgtagatctgcgtcggcggaagaacgaacctctttccatcctttagatatcaatgaaaacgctttctccgccgtagacgaatacgacgacgatgggggcgtcgttttagtctccggcggctctcaaattcatcatttttttctagggttttagcaattgctctgttttttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="44127" stop="43318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43827" g_stop="43617" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E281575" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43827" e_stop="43617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCGAGCTCCTTAGCTCTGTTTCTGATGAGTTGTAGATCTGCGTCGGCGGAAGAACGAACCTCTTTCCATCCTTTAGATATCAATGAAAACGCTTTCTCCGCCGTAGACGAATACGACGACGATGACGGCGTCGTTTTAGTCTCCGGCGGCT-TGAAATTCATCATTTTTTTCTAGGGTTTTAGCAATTGCTCTGTTTTTTCTTCTTC</genome_strand>
        <mrna_strand>AGTTTTCGAGCTCCTTAGCTCTGTTTCTGATGAGTTGTAGATCTGCGTCGGCGGAAGAACGAACCTCTTTCCATCCTTTAGATATCAATGAAAACGCTTTCTCCGCCGTAGACGAATACGACGACGATGGGGGCGTCGTTTTAGTCTCCGGCGGCTCTCAAATTCATCATTTTTTTCTAGGGTTTTAGCAATTGCTCTGTTTTTTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737861" ref_strand="+" ref_description="SGN-E737861 [LC11CA06]">
      <seq>ttcggcacgagggatacgcgtaaggtctgtatacactttatcctctacttgtggaattacacgataggagtaaggtctgcgtacactctatccttgcagactctacttgtgggattacatgatacgagtaagatctgcgtacactctattctctacttgtgggattacatgataggagtaaggtctgtgtacactctgtccttcgtagactctacttgtgagattacattgggtatgtcgttgttgttgattgttataaaagagaaaagtggtggctttttgggcaaaagaaccaaaaagttactacctttttcttttgtagaaacagcccgaacaaaaggagttcacgaaacgttttttttttgtcaaaaatttaagttttgaactttttgagcccatgcgacaatgttaatgttatgtttatgtacgaggaagcaaaattacttaaaataaggctaactagttggaggtgatttgcttcacggactagctatggaggaattatagcacgaagattatcttgtgtgaattgtgatctatatatatagtttttacgcagtcaataatttatgtaagtgttagttatacaagttttacactagaagctaaagttgtactagtaatgtagagttgtatgccgaatttttttagaagagagttttatatgaaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="44237" stop="45496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44524" g_stop="45196" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E737861" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44524" e_stop="45196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGGATTATATGATACGCGTAAGGTCTGTATACACTTTATCCTCTACTTGTGGAATTACACGATAGGAGTAAGGTCTGCGTACACTCTATCCTTGCAGACTCTACTTGTGGGATTACATGATACGAGTAAGATCTGCGTACACTCTATTCTCTACTTGTGGGATTACATGATAGGAGTAAGGTCTGTGTACACTCTGTCCTTCGTAGACTCTACTTGTGAGATTACATTGGGTATGTCGTTGTTGTTGATTGTTATAAAAGAGAAAAGTGGTGGCTTTTTGGGCAAAAGAACCAAAAAGTTACTACCTTTTTCTTTTGTAGAAACAGCCCGAACAAAAGGAGTTCATGAAAC-TTTTTTTTTTGTCACAAATTTAAGTTTTGAACTTTTTGAGCCCATGCGACAATGTTAATGTTATGTTTATGTACGAGGAAGCAGAATTACTTAAAATAAGGCTAACTAGTTGGAGGTGATTTGCTTCACGGACTAGCTATGGAGGAATTATAGCACGAAGATTATCTTGTGTGAATTGTGATCTATATATATAGTTTTTACGCAGTCAATAATTTATGTAAGTGTTAGTTATACGAGTTTTACACTAGAAGCTAAAGTTGTACTAGTAATGTAGAGTTGTATGCCGAATTTTTTTAGAAGAGAGTTTTATATGAAACGT</genome_strand>
        <mrna_strand>TTCGGCACGA-GGGATACGCGTAAGGTCTGTATACACTTTATCCTCTACTTGTGGAATTACACGATAGGAGTAAGGTCTGCGTACACTCTATCCTTGCAGACTCTACTTGTGGGATTACATGATACGAGTAAGATCTGCGTACACTCTATTCTCTACTTGTGGGATTACATGATAGGAGTAAGGTCTGTGTACACTCTGTCCTTCGTAGACTCTACTTGTGAGATTACATTGGGTATGTCGTTGTTGTTGATTGTTATAAAAGAGAAAAGTGGTGGCTTTTTGGGCAAAAGAACCAAAAAGTTACTACCTTTTTCTTTTGTAGAAACAGCCCGAACAAAAGGAGTTCACGAAACGTTTTTTTTTTGTCAAAAATTTAAGTTTTGAACTTTTTGAGCCCATGCGACAATGTTAATGTTATGTTTATGTACGAGGAAGCAAAATTACTTAAAATAAGGCTAACTAGTTGGAGGTGATTTGCTTCACGGACTAGCTATGGAGGAATTATAGCACGAAGATTATCTTGTGTGAATTGTGATCTATATATATAGTTTTTACGCAGTCAATAATTTATGTAAGTGTTAGTTATACAAGTTTTACACTAGAAGCTAAAGTTGTACTAGTAATGTAGAGTTGTATGCCGAATTTTTTTAGAAGAGAGTTTTATATGAAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737723" ref_strand="+" ref_description="SGN-E737723 [LC11AA06]">
      <seq>gctgcaggaattcggcacgagggatacgcgtaaggtctgtatacactttatcctctacttgtggaattacacgataggagtaaggtctgcgtacactctatccttgcagactctacttgtgggattacatgatacgagtaagatctgcgtacactctattctctacttgtgggattacatgataggagtaaggtctgtgtacactctgtccttcgtagactctacttgtgagattacattgggtatgtcgttgttgttgattgttataaaagagaaaagtggtggctttttgggcaaaagaaccaaaaagttactacctttttcttttgtagaaacagcccgaacaaaaggagttcacgaaacgttttttttttgtcaaaaatttaagttttgaactttttgagcccatgcgacaatgttaatgttatgtttatgtacgaggaagcaaaattacttaaaataaggctaactagttggaggtgatttgcttcacggactacctatggaggaattatagcacgaagattatcttgtgggaattgtgatctatatatatagtttttacgcagtcaataatttatgtaagtgttagttatacgagttttacactagaagctaaagttgtactagtaatgtagagttgtatgccgaatttttttagaaaagagttttatatgaaacgttgtattaaaattgatccaacttgctacttatcacggctttccttttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="44237" stop="45546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44537" g_stop="45246" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="733" r_length="711" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E737723" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44537" e_stop="45246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACGCGTAAGGTCTGTATACACTTTATCCTCTACTTGTGGAATTACACGATAGGAGTAAGGTCTGCGTACACTCTATCCTTGCAGACTCTACTTGTGGGATTACATGATACGAGTAAGATCTGCGTACACTCTATTCTCTACTTGTGGGATTACATGATAGGAGTAAGGTCTGTGTACACTCTGTCCTTCGTAGACTCTACTTGTGAGATTACATTGGGTATGTCGTTGTTGTTGATTGTTATAAAAGAGAAAAGTGGTGGCTTTTTGGGCAAAAGAACCAAAAAGTTACTACCTTTTTCTTTTGTAGAAACAGCCCGAACAAAAGGAGTTCATGAAAC-TTTTTTTTTTGTCACAAATTTAAGTTTTGAACTTTTTGAGCCCATGCGACAATGTTAATGTTATGTTTATGTACGAGGAAGCAGAATTACTTAAAATAAGGCTAACTAGTTGGAGGTGATTTGCTTCACGGACTAGCTATGGAGGAATTATAGCACGAAGATTATCTTGTGTGAATTGTGATCTATATATATAGTTTTTACGCAGTCAATAATTTATGTAAGTGTTAGTTATACGAGTTTTACACTAGAAGCTAAAGTTGTACTAGTAATGTAGAGTTGTATGCCGAATTTTTTTAGAAGAGAGTTTTATATGAAACGTTGTATTAAAATTGATCCGACTTGCTACTTATCACGGCTTTCCTTTTCACA</genome_strand>
        <mrna_strand>GATACGCGTAAGGTCTGTATACACTTTATCCTCTACTTGTGGAATTACACGATAGGAGTAAGGTCTGCGTACACTCTATCCTTGCAGACTCTACTTGTGGGATTACATGATACGAGTAAGATCTGCGTACACTCTATTCTCTACTTGTGGGATTACATGATAGGAGTAAGGTCTGTGTACACTCTGTCCTTCGTAGACTCTACTTGTGAGATTACATTGGGTATGTCGTTGTTGTTGATTGTTATAAAAGAGAAAAGTGGTGGCTTTTTGGGCAAAAGAACCAAAAAGTTACTACCTTTTTCTTTTGTAGAAACAGCCCGAACAAAAGGAGTTCACGAAACGTTTTTTTTTTGTCAAAAATTTAAGTTTTGAACTTTTTGAGCCCATGCGACAATGTTAATGTTATGTTTATGTACGAGGAAGCAAAATTACTTAAAATAAGGCTAACTAGTTGGAGGTGATTTGCTTCACGGACTACCTATGGAGGAATTATAGCACGAAGATTATCTTGTGGGAATTGTGATCTATATATATAGTTTTTACGCAGTCAATAATTTATGTAAGTGTTAGTTATACGAGTTTTACACTAGAAGCTAAAGTTGTACTAGTAATGTAGAGTTGTATGCCGAATTTTTTTAGAAAAGAGTTTTATATGAAACGTTGTATTAAAATTGATCCAACTTGCTACTTATCACGGCTTTCCTTTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729036" ref_strand="+" ref_description="SGN-E729036 [LA19DB01]">
      <seq>ancaaattggcataagaaaagattctcagacaagatcgttgagagtttatgcagcaaacggcgaaacaagctattacctgaaggagattgttccctgatcgaaggcgataatatgattgatgaactagaactacgaattgccagtgtactacgaagtactggtcatcattatgaaggtgggttttggagcaattcgacaaagcaaaacgtatcagatggtaaaagacatgtagccatagtcacaactgctagccttccgtggatgaccggaacagctgtcaatcctctcttccgagcggcttatttggccaagtctgaaaagcagaacgttacactcttggttccatggctatgtaaatcggaccaagaactagtttatccaaacaatcttacatttagttcaccagaagagcaggaactctacatacggaattggcttgaggaaagagtcggtttcaagactgatttcaagatctcgttttatcctggaaagttctccaaggaaaggcgaagtatactaccagctggagatactactcagtttatcccatcacgggatgctgatattgcaatcttagaggagccagaacatctaaactggtaccaccatggcaaacgttggactgataagtttaaccatgtcgttggtattgttcacacaaattatttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="45406" stop="46863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45706" g_stop="45726" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45727" i_stop="45815" i_length="89">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45816" g_stop="46288" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="493" r_length="472" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46289" i_stop="46383" i_length="95">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46384" g_stop="46563" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="673" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E729036" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45706" e_stop="45726"/>
          <exon e_start="45816" e_stop="46288"/>
          <exon e_start="46384" e_stop="46563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATTGGCATAAGAAAAGGTAATAGTCTGTCAAACGGTTTGTGATTTTTGTAAACTTGTTGATTCGATCTGAGTTTGTGTTTCTCTGGATTGTTCTACTTGCAATAGATATCTCAGACAAGATCGTTGAGAGTTTATGCAGCAAACGGCGAAACAAGCTATTACCTGAAGGAGATTGTTCCCTGATCGAAGGCGATAATATGATTGATGAACTAGAACTACGAATTGCCAGTGTACTACAAAGTACTGGTCATCATTATGAAGGTGGGTTTTGGAGCAATTCGACAAAGCAAAACGTATCAGATGGTAAAAGACATGTAGCCATAGTCACAACTGCTAGCCTTCCGTGGATGACCGGAACAGCTGTCAATCCTCTCTTCCGAGCGGCTTATTTGGCCAAGTCTGAAAAGCAGAACGTTACACTCTTGGTTCCATGGCTATGTAAATCGGACCAAGAACTAGTTTATCCAAACAATCTTACATTTAGTTCACCAGAAGAGCAGGAACTCTACATACGGAATTGGCTTGAGGAAAGAGTCGGTTTCAAGACTGATTTCAAGATCTCGTTTTATCCTGGAAAGGTATTTCACGCGAACTTACTGCATATTATTCAGTAAAACAAAATGATGTTACTGAAAAATGCTGTGATTATTTGACACTTCGTTTTCCTCTCCAGTTCTCCAAGGAAAGGCGAAGTATACTACCAGCTGGAGATACTACTCAGTTTATCCCATCACGGGATGCTGATATTGCAATCTTAGAGGAGCCAGAACATCTAAACTGGTACCACCATGGCAAACGTTGGACTGATAAGTTTAACCATGTCGTTGGTATTGTTCACACAAATTATTTGGAG</genome_strand>
        <mrna_strand>ANCAAATTGGCATAAGAAAAG.........................................................................................AT-TCTCAGACAAGATCGTTGAGAGTTTATGCAGCAAACGGCGAAACAAGCTATTACCTGAAGGAGATTGTTCCCTGATCGAAGGCGATAATATGATTGATGAACTAGAACTACGAATTGCCAGTGTACTACGAAGTACTGGTCATCATTATGAAGGTGGGTTTTGGAGCAATTCGACAAAGCAAAACGTATCAGATGGTAAAAGACATGTAGCCATAGTCACAACTGCTAGCCTTCCGTGGATGACCGGAACAGCTGTCAATCCTCTCTTCCGAGCGGCTTATTTGGCCAAGTCTGAAAAGCAGAACGTTACACTCTTGGTTCCATGGCTATGTAAATCGGACCAAGAACTAGTTTATCCAAACAATCTTACATTTAGTTCACCAGAAGAGCAGGAACTCTACATACGGAATTGGCTTGAGGAAAGAGTCGGTTTCAAGACTGATTTCAAGATCTCGTTTTATCCTGGAAAG...............................................................................................TTCTCCAAGGAAAGGCGAAGTATACTACCAGCTGGAGATACTACTCAGTTTATCCCATCACGGGATGCTGATATTGCAATCTTAGAGGAGCCAGAACATCTAAACTGGTACCACCATGGCAAACGTTGGACTGATAAGTTTAACCATGTCGTTGGTATTGTTCACACAAATTATTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701575" ref_strand="+" ref_description="SGN-E701575 [FA16BE01]">
      <seq>cacattaattatttggagtatatcaaaagagagaagaatggagctcttcaagctttccttgtgaaacacgtaaataattgggtcacaagagcgcattgtgacaaggtgcttcgcctttctgctgctacacaggatttacccaggtctgtggtctgcaacgttcatggtgtaaatccgaagtttttgaaaattggagaaaaaatggctgcagaaagacaaaacggtcagcaagttttctctaaaggtgcatacttcttgggaaaaatggtttgggctaagggttacagggagttaatagaccttttagcgaagcacaaaagtgaccttgatggttttaatatggatttgtttggcaacggggaagacgctcatgaagtgcagacaacggctaggacgttaaatttgaatgtcaacttcatgaaaggcagagaccacgcggatgattctcttcatagttataaagtctttataaatcctagtatcagcgatgtactctgtacagctacagctgaggcactcgctatggggaaatttgtagtttgtgcaaatcatccgtctaatgagttcttccaggcatttcctaactgcttgacgtataagacatcagaagactttgtaacaaaggttaaagaggcaatgaccggtgaacctcagcctctaactccccgagaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="46246" stop="47968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46546" g_stop="46650" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46651" i_stop="46826" i_length="176">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46827" g_stop="47176" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="455" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47177" i_stop="47447" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47448" g_stop="47668" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="676" r_length="221" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E701575" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46546" e_stop="46650"/>
          <exon e_start="46827" e_stop="47176"/>
          <exon e_start="47448" e_stop="47668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAAATTATTTGGAGTATATCAAAAGAGAGAAGAATGGAGCTCTTCAAGCTTTCCTTGTGAAACACGTAAATAATTGGGTCACAAGAGCGCATTGTGACAAGGTAATTTTCTTATATATTGATTGCGTTCTCCAAGATGGGAGTAGGAAAAGTTGTTCGTTAAATTCTTTACAGCTTTACAGACCAAAAGATGCGTTAGCACTTTGAAATGTGTTTATCGTGTCTAATTATTTAATTTATCCCGGTTCTCTGATGGAAATGCTAATTTCGTTGTTTAGGTGCTTCGCCTTTCTGCTGCTACACAGGATTTACCCAGGTCTGTGGTCTGCAACGTTCATGGTGTAAATCCGAAGTTTTTGAAAATTGGAGAAAAAATGGCTGCAGAAAGACAAAACGGTCAGCAAGTTTTCTCTAAAGGTGCATACTTCTTGGGAAAAATGGTTTGGGCTAAGGGTTACAGGGAGTTAATAGACCTTTTAGCGAAGCACAAAAGTGACCTTGATGGTTTTAATATGGATTTGTTTGGCAACGGGGAAGACGCTCATGAAGTGCAGACAACGGCTAGGACGTTAAATTTGAATGTCAACTTCATGAAAGGCAGAGACCACGCGGATGATTCTCTTCATAGGTATGAAATATGAATCCTTTTAATAGAACCCCTTTTAGTTTTTCTGCGAAGATGCTGCTGGTAATATGTTATATCATAAAGCTGCTTTAATACTTCGATCTTTAGATAGAACATAGGCGCTACCTATACTTTACACACGCATACGTAGACTTGAAAGCATATTTTTTGGTTCTTGAATGAATTTGAAAGGCGATTGTTATGATCGTAGTCACTTGCGTAAAAAATGTACTTCATGGTTCATCTTTCCTGATCGATAAATTTTTACTTGCAGTTATAAAGTCTTTATAAATCCTAGTATCAGCGATGTACTCTGTACAGCTACAGCTGAGGCACTCGCTATGGGGAAATTTGTAGTTTGTGCAGATCATCCGTCTAATGAGTTCTTCCAGGCATTTCCTAACTGCTTGACGTATAAGACATCAGAAGACTTTGTAACAAAGGTTAAAGAGGCAATGACCGGTGAACCTCAGCCTCTAACTCCCGAGGAACAAT</genome_strand>
        <mrna_strand>CACATTAATTATTTGGAGTATATCAAAAGAGAGAAGAATGGAGCTCTTCAAGCTTTCCTTGTGAAACACGTAAATAATTGGGTCACAAGAGCGCATTGTGACAAG................................................................................................................................................................................GTGCTTCGCCTTTCTGCTGCTACACAGGATTTACCCAGGTCTGTGGTCTGCAACGTTCATGGTGTAAATCCGAAGTTTTTGAAAATTGGAGAAAAAATGGCTGCAGAAAGACAAAACGGTCAGCAAGTTTTCTCTAAAGGTGCATACTTCTTGGGAAAAATGGTTTGGGCTAAGGGTTACAGGGAGTTAATAGACCTTTTAGCGAAGCACAAAAGTGACCTTGATGGTTTTAATATGGATTTGTTTGGCAACGGGGAAGACGCTCATGAAGTGCAGACAACGGCTAGGACGTTAAATTTGAATGTCAACTTCATGAAAGGCAGAGACCACGCGGATGATTCTCTTCATAG...............................................................................................................................................................................................................................................................................TTATAAAGTCTTTATAAATCCTAGTATCAGCGATGTACTCTGTACAGCTACAGCTGAGGCACTCGCTATGGGGAAATTTGTAGTTTGTGCAAATCATCCGTCTAATGAGTTCTTCCAGGCATTTCCTAACTGCTTGACGTATAAGACATCAGAAGACTTTGTAACAAAGGTTAAAGAGGCAATGACCGGTGAACCTCAGCCTCTAACTCCCCGAGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725696" ref_strand="+" ref_description="SGN-E725696 [LA05BE02]">
      <seq>gctcttcaatctttccttgtgaaacacgtaaataattgggtcacaagagcgcattgtgacaaggtgcttcgcctttctgctgctacacaggatttacccaggtctgtggtctgcaacgttcatggtgtaaatccgaagtttttgaaaattggagaaaaaatggctgcagaaagacaaaacggtcagcaagttttcttcaaaggtgcatactttttgggaaaaatggtttgggctaagggttacagggagttaatagaccttttagcgaagcacaaaagtgaccttgatggttttaatatggatttgtttggcaacggggaagacgctcatgaagtgcagacaacggctaggacgttaaatttgaatgtcaacttcatgaaaggcagagaccacgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="46288" stop="47459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46588" g_stop="46650" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46651" i_stop="46826" i_length="176">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46827" g_stop="47159" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="396" r_length="333" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E725696" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46588" e_stop="46650"/>
          <exon e_start="46827" e_stop="47159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTCAAGCTTTCCTTGTGAAACACGTAAATAATTGGGTCACAAGAGCGCATTGTGACAAGGTAATTTTCTTATATATTGATTGCGTTCTCCAAGATGGGAGTAGGAAAAGTTGTTCGTTAAATTCTTTACAGCTTTACAGACCAAAAGATGCGTTAGCACTTTGAAATGTGTTTATCGTGTCTAATTATTTAATTTATCCCGGTTCTCTGATGGAAATGCTAATTTCGTTGTTTAGGTGCTTCGCCTTTCTGCTGCTACACAGGATTTACCCAGGTCTGTGGTCTGCAACGTTCATGGTGTAAATCCGAAGTTTTTGAAAATTGGAGAAAAAATGGCTGCAGAAAGACAAAACGGTCAGCAAGTTTTCTCTAAAGGTGCATACTTCTTGGGAAAAATGGTTTGGGCTAAGGGTTACAGGGAGTTAATAGACCTTTTAGCGAAGCACAAAAGTGACCTTGATGGTTTTAATATGGATTTGTTTGGCAACGGGGAAGACGCTCATGAAGTGCAGACAACGGCTAGGACGTTAAATTTGAATGTCAACTTCATGAAAGGCAGAGACCACGCG</genome_strand>
        <mrna_strand>GCTCTTCAATCTTTCCTTGTGAAACACGTAAATAATTGGGTCACAAGAGCGCATTGTGACAAG................................................................................................................................................................................GTGCTTCGCCTTTCTGCTGCTACACAGGATTTACCCAGGTCTGTGGTCTGCAACGTTCATGGTGTAAATCCGAAGTTTTTGAAAATTGGAGAAAAAATGGCTGCAGAAAGACAAAACGGTCAGCAAGTTTTCTTCAAAGGTGCATACTTTTTGGGAAAAATGGTTTGGGCTAAGGGTTACAGGGAGTTAATAGACCTTTTAGCGAAGCACAAAAGTGACCTTGATGGTTTTAATATGGATTTGTTTGGCAACGGGGAAGACGCTCATGAAGTGCAGACAACGGCTAGGACGTTAAATTTGAATGTCAACTTCATGAAAGGCAGAGACCACGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281364" ref_strand="-" ref_description="SGN-E281364 [cLEL-1-L12]">
      <seq>gcattgtgaagatctcaatctcttacctccccaggtagaaaacccaatttatggctggtagttatatatatacacatctcatttgacctgtataggtgtgatgtaacttggatacatactcataactccaatcgttacctggtattagtgtcgtaaccaggattttcacgtaaaaagtcattttaatcttatatatagcgtatttttttttgcaaagagattcggatgaaacccttcgtgttccctagctccacctctgcactagtgtttcaggttttattttgatgatttttgtaactagtgatgcagcaagaaaagtaaataggatgtgtaaaatttgtaaaattatgataggtggtctttgtctatctaaaatgtgcccaattaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="47619" stop="48605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47919" g_stop="48304" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="410"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E281364" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281364" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47919" e_stop="48304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTGTGAAGATCTCAATCTCTTACCTCCCCAGGTAGAAAACCCAATTTATGGCTGGTAGTTATATATATACACATCTCATTTGACCTGTATAGGTGTGATGTAACTTGGATACATACTCATAACTCCAATCGTTACCTGGTATTAGTGTCGTAACCAGGATTTTCACGTAAAAAGTCATTTTAATCTTATATATAGCGTATTTTTTTTTGCAAAGAGATTCGGATGAAACCCTTCGTGTTCCCTAGCTCCACCTCTGCACTAGTGTTTCAGGTTTTATTTTGATGATTTTTGTAACTAGTGATGCAGCAAGAAAAGTAAATAGGATGTGTAAAATTTGTAAAATTATGATATATGTTCTTTGTCTATCTAAAATGTGTCAAATT</genome_strand>
        <mrna_strand>GCATTGTGAAGATCTCAATCTCTTACCTCCCCAGGTAGAAAACCCAATTTATGGCTGGTAGTTATATATATACACATCTCATTTGACCTGTATAGGTGTGATGTAACTTGGATACATACTCATAACTCCAATCGTTACCTGGTATTAGTGTCGTAACCAGGATTTTCACGTAAAAAGTCATTTTAATCTTATATATAGCGTATTTTTTTTTGCAAAGAGATTCGGATGAAACCCTTCGTGTTCCCTAGCTCCACCTCTGCACTAGTGTTTCAGGTTTTATTTTGATGATTTTTGTAACTAGTGATGCAGCAAGAAAAGTAAATAGGATGTGTAAAATTTGTAAAATTATGATAGGTGGTCTTTGTCTATCTAAAATGTGCCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740187" ref_strand="+" ref_description="SGN-E740187 [LC20BG03]">
      <seq>gtttacaacttaacaaacagcacactctatacactctctctctggatcttgcagatctgagtatagaccaaattttttgttcctacaaccgaatttctcctctgaagattcaatctgattcaacatttgctggatttgatctggtaaggtgactagaagaaaaaaatggagaagtcatgctcattgttgatacattttgataagggtacgcctgctcttgccaatgagatcaaagaagcacttgaaggaaatgatatccccgccaaggttgaagctatgaagaaagccgtaatgcttttattgaatggagaaaccctacctcagctcttcatcactattattagatatgtcttgccttctgaggatcacacaattcaaaaactgttacttttgtatttggagatcattgagaagacagattctaaggggcgtgtgctgcccgagatgatcctaatctgccagaacttgaggaataatttgcagcatcccaatgagtaccttcgtggagctacgttgagatttctttgcaggctgaatgaggttgatataattgaacctctaattccatcaattatgaacaacttggagcaccgacatccatttgtgaggaggaatgcaattcttgctgtgatgtctgtttacaagctcccacatggtgagcagctcctggtagacgcaccagagaagattgagaatctcctaaccactgagcaggatccatcggctaagaggaatgcatttcttatgctcttccaatgtgctcaggagcgtgccatcaattacctcttgactcatgttgatagagtctcttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="53299" stop="57734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53599" g_stop="53747" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53748" i_stop="56762" i_length="3015">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56763" g_stop="57434" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="816" r_length="673" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E740187" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53599" e_stop="53747"/>
          <exon e_start="56763" e_stop="57434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACAACTTAACAAACAGCACACTCTATACACTCTCTCTCTCTCTCTGGATCTTGCAGATCTGAGTATAGACCAAATTTTTTGTTCCTACAACCGAATTTCTCCTCTGAAGATTCAATCTGATTCAACATTTGCTGGATTTGATCTGGTGAGTGTGTTATTGTTTAATTTCTGCTGCTGTGTAATCAGTTTTATCTTCTGTGCGCCATTGATTTTCGTCCTTAATTGTGTTTGTTGCTCGATTTCTATATCTGGGTCATCGTGTATCTATGCTTTGCGTATTGGGTAGGGTAGGCGTTGAACTTTAGGAATTTGATGGTGTAGGGCTAGATGTCTCGGTTTAGTTATGCTAGTTTGATCGATTTAGATTTTTGTGTATAACTAATTTTCGTTCAAGTTCTGTTCTTTGTTTGATTTCTCTATTTGGGTCATTTTGTATCAGTGATTTGCGAATTGGGTTGGCGTTAAACTTTAGGAATTTGATGGTTTAGGGCTAAATGTCTCGGTTCAGTTATGCTAGTTTGATCGATTTTGATTTTTGTGTATAACTAATTTTCGTTCAAGTTCTGTTCTTTGCTCGATTTCTCTATCTGGGTCAATTTGTGTCAGTGATTTGTGTATTGGGTTGGCTTTAAACTTTAGGAATTTGATGGTGCAGGGCTAAATGTCTTGGTTCAGCTATCGATTTTGATCGATTTCTCTAATATCGTAGTTGTGTTATTTGTTTGATTTCTCTATCTGGGTCATCTTGTATCTGTGCTCTGCCTTTTAGATTAACCTTAAATTTTAAATTTTTTGTTCCAGGACTGTTTTTTTGAACGATTTCTGTATCTGGGTCATCTTGTATCTGTCGTTTGCTTGTTGGGTTAACATCAAACTTCAATTTTGTCCTAGTTCTGTCTGTTGCACGATTTCTCTATTGGGTTGGCATTGAAGTTTAGGAATTTGATGGTGTAGGGTTAAATGTCTACTTCGGTTATGCTAGTTTGATGAATTATATTATGTATACAACTGATTTTCGTCCTTGCTGTGTTGTTTATTCGATTCTCTATATGGGTTCCCTTGTATCTGTGGTTGGCTTGTTGTGTTGACATGAAACTTTAATTTTTGTCCCAGTTCTGTTTGTTGCAGGATTTCTCTATTTGGGTCATCTTGTATCTGTGATTTGCATATTGGGCTGATGATGAACTTCGGGAAGTTGATGGTTTAGGGATAAATGTCTCATTCAGCTATGCTAGTTAGATTGAATTATACTATTGTACAACTGATTTTCGTCCTAGTTGTGTTATTTGTTCGAATTCTCTACATGGGTACCCTTGTATCTGTGGTTTGCTTGTTGGCTTGACATTCAATTATTGTCCTAGTTCTGTTTGTTGTATTATTTCCATATCTGGGTCATCTTGTATATGTGATTTGGATATTGGGTTGGCGTTGAACTTTAGGAATTTGATGGCTTTGGGATAAATGTTTAATTCAGTTATGCTAGTTTGATCGTATTATATTATGTGTACAACTGATTTTCGTCCGTTGTGTTTTTATTCGATTTCTCTATATGGGTACCCTTGTAACTGTGGTTCGCTTGTTGGTTTGACATCAAACTTAATTTTTGTCGTAGTTCTGTTTTTTGTTTTATTTCTATATTTGGGTCATTTTACATCTGTGATTTGCTTATTGGGTTGGCGTTGAACTTTAGGAATGAGATGGCTTAGGGCTAAATGGCTCGTTCAGTCATGCTAGTTTGATCGATTTATAGTATGTGTACAACTGATTTTTAGTCCTAGTTGTGTTATTTGCTCCATTTCTCTGTATGGGTACCCTTTTGTCTGTGGTGTGCTTGTTGGGTTGACGTCGAACTTTAATTTTTGTTCTACTTCTATTCTTTGCTCGATTTTTCTATCTCTGTCATCTTGTATTTATGCTTGCTTACTGGGTTGACCCCAAACATTAACATTTTCATCCTAGTTCTGCTCTTTGCCCTATTTCTCTATCTGGGTCCTCTTGTATCTGTGTTTGCTTATTGGGTTGTCACCACACATTAAAAATTTATTCCTAGTTCTGCTCTTTTCTCGGTTTCTCTACCTGTGTCATCTTGTATCTGTGCTGTGCTTATTGGGTTGGCATCCAACTTGAGATATTTGATGGTTTACGGTTAGATGTCTTGTTCGTTATGCTATTTTGATCAATTTGTAGATCTGACTTTGGTGATTGAATAAGAAAAGCTGTGTGCTTCTTCCAGTTTGTTTGGAAGGTTGTTACCTATGCTGTTATATTATGTTGTTAGTTTAACTATAATGCTTGTTTTGATTTTTACTTAAGTTTTATTAGATTGTATCGTTAACTTTGTCGATAGGTAACAAAGAAAAGTTCCATTTTGTGTAAAAAGTGATTTGGTGTGATTGGTCATTATCTTCTTCTTTTTTTTTTTTAAATTTTGTTTTTACTTGTTATTTAATAATCCTAATTTATCGTTTACCTTACCTTTTTATAGTAGCTCTACCCCGTATTTAAGTGCACCATTACGTAACAACATAAACTCCGTAACAACATAAACTCAGTAATTTTTAAATTTCAATATCACATTTTTGTTGTGTTTACCACTTCAATAATATAATTTAGTATTGACTTGGATTCTGGCTTGTAGTAAGATTGAATCTGGTATTGGGTTGTCTGTTCCTTATATTGCTAAAGAATCAAAGGAGCATCACTAAGGGGTCGTTTGGTTGGGCATAAGTTATCCCATGATTATATATCCCGGGATAAGTTATCCCACCATGTATGTGGGATAAGTTATCCCATCATTATGGTATAAATGGTGGGATAAGTTATCCCAAACTTGGCAACCAAACAAGACACCAAAATTTTATCCCTAGACTATTTATTTTTATCCCTCACACCAAACAACCCCTAAGAGTTTAATTATCTTGCAGTTCATTACTTCATTTCGTGCTTTTTCCCCAGTTTTTAAGACGTATTGTGATTTTTGATCTCCTTGTAAAATAGATGCATTCACAGAGTTGGTAGATAGAACAGCAATTGTAGTAATTTAACTGGCGCAATAGAAGAAAACTAGGACTCCTTTTCTTGAACCTTATGACTATATTCCTTCTTTTGTAACTATAAATATTATCAGGTCGAAATTTATGAGAAGATACATTAATTTCAGGTAAGGTGACTAGAAGAAAAAAATGGAGAAGTCATGCTCATTGTTGATACATTTTGATAAGGGTACGCCTGCTCTTGCCAATGAGATCAAAGAAGCACTTGAAGGAAATGATATCCCCGCCAAGGTTGAAGCTATGAAGAAAGCCGTAATGCTTTTATTGAATGGAGAAACCCTACCTCAGCTCTTCATCACTATTATTAGATATGTCTTGCCTTCTGAGGATCACACAATTCAAAAACTGTTACTTTTGTATTTGGAGATCATTGAGAAGACAGATTCTAAGGGGCGTGTGCTGCCCGAGATGATCCTAATCTGCCAGAACTTGAGGAATAATTTGCAGCATCCCAATGAGTACCTTCGTGGAGCTACGTTGAGATTTCTTTGCAGGCTGAATGAGGTTGATATAATTGAACCTCTAATTCCATCAATTATGAACAACTTGGAGCACCGACATCCATTTGTGAGGAGGAATGCAATTCTTGCTGTGATGTCTGTTTACAAGCTCCCACATGGTGAGCAGCTCCTGGTAGACGCACCAGAGAAGATTGAGAATCTCCTAACCACTGAGCAGGATCCATCGGCTAAGAGGAATGCATTTCTTATGCTCTTCCAATGTGCTCAGGAGCGTGCCATCAATTACCTCTTGACTCATGTTGATAGAGTCTC-TGATTG</genome_strand>
        <mrna_strand>GTTTACAACTTAACAAACAGCACACTCTATACACTCT------CTCTCTGGATCTTGCAGATCTGAGTATAGACCAAATTTTTTGTTCCTACAACCGAATTTCTCCTCTGAAGATTCAATCTGATTCAACATTTGCTGGATTTGATCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGTGACTAGAAGAAAAAAATGGAGAAGTCATGCTCATTGTTGATACATTTTGATAAGGGTACGCCTGCTCTTGCCAATGAGATCAAAGAAGCACTTGAAGGAAATGATATCCCCGCCAAGGTTGAAGCTATGAAGAAAGCCGTAATGCTTTTATTGAATGGAGAAACCCTACCTCAGCTCTTCATCACTATTATTAGATATGTCTTGCCTTCTGAGGATCACACAATTCAAAAACTGTTACTTTTGTATTTGGAGATCATTGAGAAGACAGATTCTAAGGGGCGTGTGCTGCCCGAGATGATCCTAATCTGCCAGAACTTGAGGAATAATTTGCAGCATCCCAATGAGTACCTTCGTGGAGCTACGTTGAGATTTCTTTGCAGGCTGAATGAGGTTGATATAATTGAACCTCTAATTCCATCAATTATGAACAACTTGGAGCACCGACATCCATTTGTGAGGAGGAATGCAATTCTTGCTGTGATGTCTGTTTACAAGCTCCCACATGGTGAGCAGCTCCTGGTAGACGCACCAGAGAAGATTGAGAATCTCCTAACCACTGAGCAGGATCCATCGGCTAAGAGGAATGCATTTCTTATGCTCTTCCAATGTGCTCAGGAGCGTGCCATCAATTACCTCTTGACTCATGTTGATAGAGTCTCTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318413" ref_strand="+" ref_description="SGN-E318413 [cTOB-10-G21]">
      <seq>agtttctgaggaaagtgaagctgctgattcttcaaaaaagactcagcaagcaaactccattactactttgtcatctagaagaccagctgtacttgctgatgggacatatgctactcaaagtgctgcatctgaaactgctttctctcccccgacagttgttcaaggatctttaaccactggaaacttgagatccctccttctcactggtgatttcttcttgggagcagttgttgcttgtacactgactaagctcattctgaggctggaagaagttcagccatcaaaacttgaattgaacaaagctacaacaaatgcattactgatcatggtctcaatgatacagctagggcagtctcatgctcttcctcacccaattgacaatgattctcatgacagaatagttctttgcataagattgctctgtaatacgggcaatgaggttaggaagatctggttgagctcttgtcgcgagagttttgttaatatgctttctgataaacaactacgagagacagaggagatcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="57939" stop="59066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58239" g_stop="58764" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E318413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58239" e_stop="58764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCTGAGGAAAGTGAAGCTGCTGATTCTTCAAAAAAGACTCAGCAAGCAAACTCCATTACTACTTTGTCATCTAGAAGACCAGCTGTACTTGCTGATGGGACATATGCTACTCAAAGTGCTGCATCTGAAACTGCTTTCTCTCCCCCGACAGTTGTTCAAGGATCTTTAACCACTGGAAACTTGAGATCCCTCCTTCTCACTGGTGATTTCTTCTTGGGAGCAGTTGTTGCTTGTACACTGACTAAGCTCATTCTGAGGCTGGAAGAAGTTCAGCCATCAAAACTTGAATTGAACAAAGCTACAACAAATGCATTACTGATCATGGTCTCAATGATACAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAA</genome_strand>
        <mrna_strand>AGTTTCTGAGGAAAGTGAAGCTGCTGATTCTTCAAAAAAGACTCAGCAAGCAAACTCCATTACTACTTTGTCATCTAGAAGACCAGCTGTACTTGCTGATGGGACATATGCTACTCAAAGTGCTGCATCTGAAACTGCTTTCTCTCCCCCGACAGTTGTTCAAGGATCTTTAACCACTGGAAACTTGAGATCCCTCCTTCTCACTGGTGATTTCTTCTTGGGAGCAGTTGTTGCTTGTACACTGACTAAGCTCATTCTGAGGCTGGAAGAAGTTCAGCCATCAAAACTTGAATTGAACAAAGCTACAACAAATGCATTACTGATCATGGTCTCAATGATACAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321145" ref_strand="+" ref_description="SGN-E321145 [cTOB-13-D13]">
      <seq>aagaagttcagccatcaaaacttgaattgaacaaagctacaacaaatgcattactgatcatggtctcaatgataccagctagggcagtctcatgctcttcctcacccaattgacaatgattctcatgacagaatagttctttgcataagattgctctgtaatacgggcaatgaggttaggaagatctggttgagctcttgtcgcgagagttttgttaatatgctttctgataaacaactacgagagacagaggagatcaaagcaaaggcacaaatttctcgctcccagccagatgacctcattgatttctaccatttgaagagtaggaagggaatgagccaactggagttggaagatgaagtccaggatgatttgaaacgtgccactggagaattcgtcaaggatgagaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="58205" stop="61041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58505" g_stop="58833" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60658" g_stop="60741" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="414" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E321145" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58505" e_stop="58833"/>
          <exon e_start="60658" e_stop="60741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTTCAGCCATCAAAACTTGAATTGAACAAAGCTACAACAAATGCATTACTGATCATGGTCTCAATGATA-CAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAGGTTAGAAACTTCTATCTGAAACATGGCGTGTTTGGACGATGCAATAGGTTCTCTTTTCTAATTCCTGCTTATACTTCACTTGCTATCTACTGAAGATGTTAATTAGTAAACCTTTTGTTAACTGACCAGCATAACAGACAGTCTGATCTTGTATCCATACTCCTTAATCTGTCTTCGTTCAGGCCCTACATGGGTCATTCTCATCTTGTCTTATTTTTCCACCTTGCCGAACCACATACTCATCTGGGATTTTGGGTGTTTATTTCTGCCCGTTGAGGAAAAGAAAAGTAGTTTATTTCTGGTGTACCTCTGTGTTTTCATGGCTTAGTTTTTGTCTTTTATCTCCATGATAGTATTTCAATCAAATAATTAGAGTTATACATGTGTTTTGGTGAGTTTCTTTAAGCATGGGGAGTAAAAAATTGATGAAGTTTCCTTTAAAAAAGAATGTATTAGTTGTGATGCGTCTTTGTAATTTACCAGTAGAGTAAATTGGAAATCTTTCCCTAATTTATATGTGGTGCAAAAAATTGGACTTTCTAATACTGGCGGCACTTTCTGGAGTAAAACTTAACTTGCCTTGCACCTGACCTGTCTATACAAAGTAAGAAAAATTGAGCAATTACGTGAACTCTAATTTTGAGATTTTTGTTTTAGATTATGCTAACCGACTACATTTGGCATTTCTTTTAAAATTATTCTGGAAAACAGTTTTCTTGAGTCAAGGGTCTATCAGAAACAACCTCTTTACCCCTCAAAGACCGGGTTAAGGGTTGTGTAAACCCTCCCTCCCCCAGACCCTACTTGTAGCACTATACTGTGTATGTTGTTGTATTTGACTACATTTCACTTTAAATACACAACTGTAAGATCTCATTGGCAATTGATACTGTATCTTTTTCTTTCTTTCTAGCACCATTAAAATGGAGAAAAGTTTCACAGCGAAACAGATTCCTTTTGTTGTTTCTTGAGTCTTATTCAATTTAAAATGAATAGTTTTCTTTTCCAGCTAATTAAATAATATTTTCATTCTATATAACAAATAGAATAGGAAATAAATGTCACAAATATGGTTGTGTAGACAAATAACTCCAACTTCAAAAAATATGGTTGTAGAGACAAATAACTCTTCTTACTATATTACAGACTTAAATCTGTCCACGTATTAGAGGTTTGGGGTGTTTTTGGTGCCAATTGCGTTTTGAATCTCCAAAAATTGTGAATGAATGAAAGTGGACTTTGAGCCCCAAAAAGGTTGATAATTAGGTCATGTGGATCGTGGAAAGCACAAGCTTTTCCATCAACAACGTTGGTATTAAGACTTGAAGAGAAGGTCGTATGGTTGCACATGTTCCTAAGGTTATTGTATTATATGTGCAGCTAAAACGTGTAGGTCAAAATTACTTTTTGTTGCTATAGAGAAGGGGTAGAATACAATATGTAGGCTCTTTATCTATTAATATAACGAAGACATAATTTGCTCTGGTCCCCACTATGCAACCCCTTTCACCTTCTCTATTTGTCCTCCCTCTAAAGAATATTTGAGTTGTAACTAATTACACCTTATTCCTCTATCCCAAACAAGTTACAGTTGGCTATATATGAATCTTCACTATCCATGTCCTGCCTTAATTGAAATGAACCTATGTTACTTTAAGGCTCAAGTTTTTTTTTTTTTTCGTTCTCCTTATTTAACTAATCTGTGCAGTAATTTCTAAATCATGCGAGGGTTTGTCTAGTTAATTCATTTTTTTCTCCCTTGGTGCTTAGAATCAAAATGCAATAGTTGCTTCTCCATGTCCTAACTAAATATATGTATGCCAGGGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGAT</genome_strand>
        <mrna_strand>AAGAAGTTCAGCCATCAAAACTTGAATTGAACAAAGCTACAACAAATGCATTACTGATCATGGTCTCAATGATACCAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250588" ref_strand="+" ref_description="SGN-E250588 [cLEG-7-I13]">
      <seq>ggtctcaatgatacagcttgggcagtctcatgctcttcctcacccaattgacaatgattctcatgacagaatagttctttgcataagattgctctgtaatacgggcaatgaggttaggaagatctggttgagctcttgtcgcgagagttttgttaatatgctttctgataaacaactacgagagacagaggagatcaaagcaaaggcacaaatttctcgctcccagccagatgacctcattgatttctaccatttgaagagtaggaagggaatgagccaactggagttggaagatgaagtccaggatgatttgaaacgtgccactggagaattcgtcaaggatgagaatgatgctaataagctaagcagggtactgcagcttacaggatttagtgatcctgtttatgctgaagcatatgtaacagttcatcattatgacattgtcctagatgttaccgtgataaatcgaaccaaagagacacttcagaatttgtgtttggaactggcaaccatgggtgatcttaagctcgttgagcgtccacagaattatactatagctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="58266" stop="61251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58566" g_stop="58833" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60658" g_stop="60951" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="562" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E250588" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58566" e_stop="58833"/>
          <exon e_start="60658" e_stop="60951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTCAATGATACAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAGGTTAGAAACTTCTATCTGAAACATGGCGTGTTTGGACGATGCAATAGGTTCTCTTTTCTAATTCCTGCTTATACTTCACTTGCTATCTACTGAAGATGTTAATTAGTAAACCTTTTGTTAACTGACCAGCATAACAGACAGTCTGATCTTGTATCCATACTCCTTAATCTGTCTTCGTTCAGGCCCTACATGGGTCATTCTCATCTTGTCTTATTTTTCCACCTTGCCGAACCACATACTCATCTGGGATTTTGGGTGTTTATTTCTGCCCGTTGAGGAAAAGAAAAGTAGTTTATTTCTGGTGTACCTCTGTGTTTTCATGGCTTAGTTTTTGTCTTTTATCTCCATGATAGTATTTCAATCAAATAATTAGAGTTATACATGTGTTTTGGTGAGTTTCTTTAAGCATGGGGAGTAAAAAATTGATGAAGTTTCCTTTAAAAAAGAATGTATTAGTTGTGATGCGTCTTTGTAATTTACCAGTAGAGTAAATTGGAAATCTTTCCCTAATTTATATGTGGTGCAAAAAATTGGACTTTCTAATACTGGCGGCACTTTCTGGAGTAAAACTTAACTTGCCTTGCACCTGACCTGTCTATACAAAGTAAGAAAAATTGAGCAATTACGTGAACTCTAATTTTGAGATTTTTGTTTTAGATTATGCTAACCGACTACATTTGGCATTTCTTTTAAAATTATTCTGGAAAACAGTTTTCTTGAGTCAAGGGTCTATCAGAAACAACCTCTTTACCCCTCAAAGACCGGGTTAAGGGTTGTGTAAACCCTCCCTCCCCCAGACCCTACTTGTAGCACTATACTGTGTATGTTGTTGTATTTGACTACATTTCACTTTAAATACACAACTGTAAGATCTCATTGGCAATTGATACTGTATCTTTTTCTTTCTTTCTAGCACCATTAAAATGGAGAAAAGTTTCACAGCGAAACAGATTCCTTTTGTTGTTTCTTGAGTCTTATTCAATTTAAAATGAATAGTTTTCTTTTCCAGCTAATTAAATAATATTTTCATTCTATATAACAAATAGAATAGGAAATAAATGTCACAAATATGGTTGTGTAGACAAATAACTCCAACTTCAAAAAATATGGTTGTAGAGACAAATAACTCTTCTTACTATATTACAGACTTAAATCTGTCCACGTATTAGAGGTTTGGGGTGTTTTTGGTGCCAATTGCGTTTTGAATCTCCAAAAATTGTGAATGAATGAAAGTGGACTTTGAGCCCCAAAAAGGTTGATAATTAGGTCATGTGGATCGTGGAAAGCACAAGCTTTTCCATCAACAACGTTGGTATTAAGACTTGAAGAGAAGGTCGTATGGTTGCACATGTTCCTAAGGTTATTGTATTATATGTGCAGCTAAAACGTGTAGGTCAAAATTACTTTTTGTTGCTATAGAGAAGGGGTAGAATACAATATGTAGGCTCTTTATCTATTAATATAACGAAGACATAATTTGCTCTGGTCCCCACTATGCAACCCCTTTCACCTTCTCTATTTGTCCTCCCTCTAAAGAATATTTGAGTTGTAACTAATTACACCTTATTCCTCTATCCCAAACAAGTTACAGTTGGCTATATATGAATCTTCACTATCCATGTCCTGCCTTAATTGAAATGAACCTATGTTACTTTAAGGCTCAAGTTTTTTTTTTTTTTCGTTCTCCTTATTTAACTAATCTGTGCAGTAATTTCTAAATCATGCGAGGGTTTGTCTAGTTAATTCATTTTTTTCTCCCTTGGTGCTTAGAATCAAAATGCAATAGTTGCTTCTCCATGTCCTAACTAAATATATGTATGCCAGGGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCT</genome_strand>
        <mrna_strand>GGTCTCAATGATACAGCTTGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549135" ref_strand="+" ref_description="SGN-E549135 [TUS-67-J24]">
      <seq>tgattctcatgacagaatagttctttgcataagattgctctgtaatacgggcaatgaggttaggaagatctggttgagctcttgtcgcgagagttttgttaatatgctttctgataaacaactacgagagacagaggagatcaaagcaaaggcacaaatttctcgctcccagccagatgacctcattgatttctaccatttgaagagtaggaagggaatgagccaactggagttggaagatgaagtccaggatgatttgaaacgtgccactggagaattcgtcaaggatgagaatgatgctaataagctaagcagggtactgcagcttacaggatttagtgatcctgtttatgctgaagcatatgtaacagttcatcattatgacattgtcctagatgttaccgtgataaatcgaaccaaagagacacttcagaatttgtgtttggaactggcaaccatgggtgatcttaagctcgttgagcgtccacagaattatactatagctcctgagtcaagcaagcagataaaagctaatatcaaggtgtcttccaccgagactggagtgatttttggtaacattgtctatgagtcttcaaatgtgctcgagcgaactgttgttgtgctcaatgatatccatattgacatcatggattacatctctcctgctgtttgcagtgaggctgcttttagaactatgtgggctgaatttgagtgggaaaacaggttgctgtcaacactgtcattcaagatgaaaaaggatttcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="58320" stop="62005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58620" g_stop="58833" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60658" g_stop="61167" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="723" r_length="509" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61168" i_stop="61660" i_length="493">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61661" g_stop="61705" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="768" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E549135" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58620" e_stop="58833"/>
          <exon e_start="60658" e_stop="61167"/>
          <exon e_start="61661" e_stop="61705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAGGTTAGAAACTTCTATCTGAAACATGGCGTGTTTGGACGATGCAATAGGTTCTCTTTTCTAATTCCTGCTTATACTTCACTTGCTATCTACTGAAGATGTTAATTAGTAAACCTTTTGTTAACTGACCAGCATAACAGACAGTCTGATCTTGTATCCATACTCCTTAATCTGTCTTCGTTCAGGCCCTACATGGGTCATTCTCATCTTGTCTTATTTTTCCACCTTGCCGAACCACATACTCATCTGGGATTTTGGGTGTTTATTTCTGCCCGTTGAGGAAAAGAAAAGTAGTTTATTTCTGGTGTACCTCTGTGTTTTCATGGCTTAGTTTTTGTCTTTTATCTCCATGATAGTATTTCAATCAAATAATTAGAGTTATACATGTGTTTTGGTGAGTTTCTTTAAGCATGGGGAGTAAAAAATTGATGAAGTTTCCTTTAAAAAAGAATGTATTAGTTGTGATGCGTCTTTGTAATTTACCAGTAGAGTAAATTGGAAATCTTTCCCTAATTTATATGTGGTGCAAAAAATTGGACTTTCTAATACTGGCGGCACTTTCTGGAGTAAAACTTAACTTGCCTTGCACCTGACCTGTCTATACAAAGTAAGAAAAATTGAGCAATTACGTGAACTCTAATTTTGAGATTTTTGTTTTAGATTATGCTAACCGACTACATTTGGCATTTCTTTTAAAATTATTCTGGAAAACAGTTTTCTTGAGTCAAGGGTCTATCAGAAACAACCTCTTTACCCCTCAAAGACCGGGTTAAGGGTTGTGTAAACCCTCCCTCCCCCAGACCCTACTTGTAGCACTATACTGTGTATGTTGTTGTATTTGACTACATTTCACTTTAAATACACAACTGTAAGATCTCATTGGCAATTGATACTGTATCTTTTTCTTTCTTTCTAGCACCATTAAAATGGAGAAAAGTTTCACAGCGAAACAGATTCCTTTTGTTGTTTCTTGAGTCTTATTCAATTTAAAATGAATAGTTTTCTTTTCCAGCTAATTAAATAATATTTTCATTCTATATAACAAATAGAATAGGAAATAAATGTCACAAATATGGTTGTGTAGACAAATAACTCCAACTTCAAAAAATATGGTTGTAGAGACAAATAACTCTTCTTACTATATTACAGACTTAAATCTGTCCACGTATTAGAGGTTTGGGGTGTTTTTGGTGCCAATTGCGTTTTGAATCTCCAAAAATTGTGAATGAATGAAAGTGGACTTTGAGCCCCAAAAAGGTTGATAATTAGGTCATGTGGATCGTGGAAAGCACAAGCTTTTCCATCAACAACGTTGGTATTAAGACTTGAAGAGAAGGTCGTATGGTTGCACATGTTCCTAAGGTTATTGTATTATATGTGCAGCTAAAACGTGTAGGTCAAAATTACTTTTTGTTGCTATAGAGAAGGGGTAGAATACAATATGTAGGCTCTTTATCTATTAATATAACGAAGACATAATTTGCTCTGGTCCCCACTATGCAACCCCTTTCACCTTCTCTATTTGTCCTCCCTCTAAAGAATATTTGAGTTGTAACTAATTACACCTTATTCCTCTATCCCAAACAAGTTACAGTTGGCTATATATGAATCTTCACTATCCATGTCCTGCCTTAATTGAAATGAACCTATGTTACTTTAAGGCTCAAGTTTTTTTTTTTTTTCGTTCTCCTTATTTAACTAATCTGTGCAGTAATTTCTAAATCATGCGAGGGTTTGTCTAGTTAATTCATTTTTTTCTCCCTTGGTGCTTAGAATCAAAATGCAATAGTTGCTTCTCCATGTCCTAACTAAATATATGTATGCCAGGGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAGGTAGAATGCCATGCTTTATTATTTCACAATCATTTGATAGTTCTTTTTTTGCTGCTTCTAATTCTCTATGCCTTTTGATGTCATAAAAGATCCGTTCCTTTGAGTTGGAGAATTGAGACAAAGTCGTTCTCTTATGTTTTGATGAATCATGTCATATGATTTCTGGGTTTTTTTGGGTGCCTTCAAAATGGGTTACGAGTGGGTTTACCAATTCTTTTTCGGAAATTAGTGGTCCGAAGGTGATAGTTCTCTTGCTAGTATGTTTCTTTGATGTGTGTTCTTGAATCTTGATCTTTTAATGGAGTTGTTTGATTTAACAGGTACATTTGTGATTTGATGCTATTAGACTCTCGTGTGGACTTTTCTTTGTCCTACTGTGAAAATAACAGAGCAACAGACACATGAATTATAAATTTATGCACTGATGAATAGTCCAGACTGAAGTGGTCTGATCAAAACCATGAGCTCCTCAGGCTAATATTTTACTTTGCAGGTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGAC</genome_strand>
        <mrna_strand>TGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAAC-AG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309350" ref_strand="+" ref_description="SGN-E309350 [cLEY-22-O13]">
      <seq>gattctcatgacagaatagttctttgcataagattgctctgtggtacgggcaatgaggttaggaagatctggttgagctcttgtcgcgagagttttgttaatatgctttctgataaacaactacgagagacagaggagatcaaagcaaaggcacaaatttctcgctcccagccagatgacctcattgatttctaccatttgaagagtaggaagggaatgagccaactggagttggaagatgaagtccaggatgatttgaaacgtgccactggagaattcgtcaaggatgagaatgatgctaataagctaagcagggtactgcagcttacaggatttagtgatcctgtttatgctgaagcatatgtaacagttcatcattatgacattgtcctagatgttaccgtgataaatcgaaccaaagagacacttcagaatttgtgtttggaactggcaaccatgggtgatcttaagctcgttgagcgtccacagaattatactatagctcctgagtcaagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="58321" stop="61263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58621" g_stop="58833" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60658" g_stop="60963" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="519" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E309350" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58621" e_stop="58833"/>
          <exon e_start="60658" e_stop="60963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAGGTTAGAAACTTCTATCTGAAACATGGCGTGTTTGGACGATGCAATAGGTTCTCTTTTCTAATTCCTGCTTATACTTCACTTGCTATCTACTGAAGATGTTAATTAGTAAACCTTTTGTTAACTGACCAGCATAACAGACAGTCTGATCTTGTATCCATACTCCTTAATCTGTCTTCGTTCAGGCCCTACATGGGTCATTCTCATCTTGTCTTATTTTTCCACCTTGCCGAACCACATACTCATCTGGGATTTTGGGTGTTTATTTCTGCCCGTTGAGGAAAAGAAAAGTAGTTTATTTCTGGTGTACCTCTGTGTTTTCATGGCTTAGTTTTTGTCTTTTATCTCCATGATAGTATTTCAATCAAATAATTAGAGTTATACATGTGTTTTGGTGAGTTTCTTTAAGCATGGGGAGTAAAAAATTGATGAAGTTTCCTTTAAAAAAGAATGTATTAGTTGTGATGCGTCTTTGTAATTTACCAGTAGAGTAAATTGGAAATCTTTCCCTAATTTATATGTGGTGCAAAAAATTGGACTTTCTAATACTGGCGGCACTTTCTGGAGTAAAACTTAACTTGCCTTGCACCTGACCTGTCTATACAAAGTAAGAAAAATTGAGCAATTACGTGAACTCTAATTTTGAGATTTTTGTTTTAGATTATGCTAACCGACTACATTTGGCATTTCTTTTAAAATTATTCTGGAAAACAGTTTTCTTGAGTCAAGGGTCTATCAGAAACAACCTCTTTACCCCTCAAAGACCGGGTTAAGGGTTGTGTAAACCCTCCCTCCCCCAGACCCTACTTGTAGCACTATACTGTGTATGTTGTTGTATTTGACTACATTTCACTTTAAATACACAACTGTAAGATCTCATTGGCAATTGATACTGTATCTTTTTCTTTCTTTCTAGCACCATTAAAATGGAGAAAAGTTTCACAGCGAAACAGATTCCTTTTGTTGTTTCTTGAGTCTTATTCAATTTAAAATGAATAGTTTTCTTTTCCAGCTAATTAAATAATATTTTCATTCTATATAACAAATAGAATAGGAAATAAATGTCACAAATATGGTTGTGTAGACAAATAACTCCAACTTCAAAAAATATGGTTGTAGAGACAAATAACTCTTCTTACTATATTACAGACTTAAATCTGTCCACGTATTAGAGGTTTGGGGTGTTTTTGGTGCCAATTGCGTTTTGAATCTCCAAAAATTGTGAATGAATGAAAGTGGACTTTGAGCCCCAAAAAGGTTGATAATTAGGTCATGTGGATCGTGGAAAGCACAAGCTTTTCCATCAACAACGTTGGTATTAAGACTTGAAGAGAAGGTCGTATGGTTGCACATGTTCCTAAGGTTATTGTATTATATGTGCAGCTAAAACGTGTAGGTCAAAATTACTTTTTGTTGCTATAGAGAAGGGGTAGAATACAATATGTAGGCTCTTTATCTATTAATATAACGAAGACATAATTTGCTCTGGTCCCCACTATGCAACCCCTTTCACCTTCTCTATTTGTCCTCCCTCTAAAGAATATTTGAGTTGTAACTAATTACACCTTATTCCTCTATCCCAAACAAGTTACAGTTGGCTATATATGAATCTTCACTATCCATGTCCTGCCTTAATTGAAATGAACCTATGTTACTTTAAGGCTCAAGTTTTTTTTTTTTTTCGTTCTCCTTATTTAACTAATCTGTGCAGTAATTTCTAAATCATGCGAGGGTTTGTCTAGTTAATTCATTTTTTTCTCCCTTGGTGCTTAGAATCAAAATGCAATAGTTGCTTCTCCATGTCCTAACTAAATATATGTATGCCAGGGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAG</genome_strand>
        <mrna_strand>GATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTGGTACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324475" ref_strand="+" ref_description="SGN-E324475 [cTOC-6-N21]">
      <seq>ctcgtgccgaatctgcacgagggacagaatagttctttgcatgggattgctctgtaatacgggcgatgaggttaggaagatctggttgagctcttgtcgcgagagttttgttaatatgctttctgataaacaactacgagagacagaggagatcaaagcaaaggcgcaaatttctcgctcccagccagatgacctcattgatttctaccatttgaagagtaggaagggaatgagccaactggagttggaagatgaagtccaggatgatttgaaacgtgccactggagaattcgtcaaggatgagaatgatgctaataagctaagcagggtactgcagcttacaggatttagtgatcctgtttatgctgaagcatatgtaacagttcatcattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="58330" stop="61127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58633" g_stop="58833" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="226" r_length="201" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60658" g_stop="60827" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="396" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E324475" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58633" e_stop="58833"/>
          <exon e_start="60658" e_stop="60827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAGGTTAGAAACTTCTATCTGAAACATGGCGTGTTTGGACGATGCAATAGGTTCTCTTTTCTAATTCCTGCTTATACTTCACTTGCTATCTACTGAAGATGTTAATTAGTAAACCTTTTGTTAACTGACCAGCATAACAGACAGTCTGATCTTGTATCCATACTCCTTAATCTGTCTTCGTTCAGGCCCTACATGGGTCATTCTCATCTTGTCTTATTTTTCCACCTTGCCGAACCACATACTCATCTGGGATTTTGGGTGTTTATTTCTGCCCGTTGAGGAAAAGAAAAGTAGTTTATTTCTGGTGTACCTCTGTGTTTTCATGGCTTAGTTTTTGTCTTTTATCTCCATGATAGTATTTCAATCAAATAATTAGAGTTATACATGTGTTTTGGTGAGTTTCTTTAAGCATGGGGAGTAAAAAATTGATGAAGTTTCCTTTAAAAAAGAATGTATTAGTTGTGATGCGTCTTTGTAATTTACCAGTAGAGTAAATTGGAAATCTTTCCCTAATTTATATGTGGTGCAAAAAATTGGACTTTCTAATACTGGCGGCACTTTCTGGAGTAAAACTTAACTTGCCTTGCACCTGACCTGTCTATACAAAGTAAGAAAAATTGAGCAATTACGTGAACTCTAATTTTGAGATTTTTGTTTTAGATTATGCTAACCGACTACATTTGGCATTTCTTTTAAAATTATTCTGGAAAACAGTTTTCTTGAGTCAAGGGTCTATCAGAAACAACCTCTTTACCCCTCAAAGACCGGGTTAAGGGTTGTGTAAACCCTCCCTCCCCCAGACCCTACTTGTAGCACTATACTGTGTATGTTGTTGTATTTGACTACATTTCACTTTAAATACACAACTGTAAGATCTCATTGGCAATTGATACTGTATCTTTTTCTTTCTTTCTAGCACCATTAAAATGGAGAAAAGTTTCACAGCGAAACAGATTCCTTTTGTTGTTTCTTGAGTCTTATTCAATTTAAAATGAATAGTTTTCTTTTCCAGCTAATTAAATAATATTTTCATTCTATATAACAAATAGAATAGGAAATAAATGTCACAAATATGGTTGTGTAGACAAATAACTCCAACTTCAAAAAATATGGTTGTAGAGACAAATAACTCTTCTTACTATATTACAGACTTAAATCTGTCCACGTATTAGAGGTTTGGGGTGTTTTTGGTGCCAATTGCGTTTTGAATCTCCAAAAATTGTGAATGAATGAAAGTGGACTTTGAGCCCCAAAAAGGTTGATAATTAGGTCATGTGGATCGTGGAAAGCACAAGCTTTTCCATCAACAACGTTGGTATTAAGACTTGAAGAGAAGGTCGTATGGTTGCACATGTTCCTAAGGTTATTGTATTATATGTGCAGCTAAAACGTGTAGGTCAAAATTACTTTTTGTTGCTATAGAGAAGGGGTAGAATACAATATGTAGGCTCTTTATCTATTAATATAACGAAGACATAATTTGCTCTGGTCCCCACTATGCAACCCCTTTCACCTTCTCTATTTGTCCTCCCTCTAAAGAATATTTGAGTTGTAACTAATTACACCTTATTCCTCTATCCCAAACAAGTTACAGTTGGCTATATATGAATCTTCACTATCCATGTCCTGCCTTAATTGAAATGAACCTATGTTACTTTAAGGCTCAAGTTTTTTTTTTTTTTCGTTCTCCTTATTTAACTAATCTGTGCAGTAATTTCTAAATCATGCGAGGGTTTGTCTAGTTAATTCATTTTTTTCTCCCTTGGTGCTTAGAATCAAAATGCAATAGTTGCTTCTCCATGTCCTAACTAAATATATGTATGCCAGGGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGA</genome_strand>
        <mrna_strand>AGAATAGTTCTTTGCATGGGATTGCTCTGTAATACGGGCGATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCGCAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257777" ref_strand="+" ref_description="SGN-E257777 [cLEG-39-N20]">
      <seq>ggcaatgaggttatgaagatctggttgagctcttgtcgcgagagttttgttaatatgctttctgataaacaactacgagagacagaggagatcaaagcaaaggcacaaatttctcgctcccagccagatgacctcattgatgtctaccatttgaagagtatgaagggaatgagccaactggagttggaagatgaagtccacgatgatttgaaacgtgccactggagaattcgtcaaggatgagaatgatgctaataagctaagcaaggtactgcagcttacaggattgagtgatcctgtttatgctgaagcatatgtgacaggtcatcattatgacattgtcctagatgttaccgtgatgaatcgaaccacagagacacttcagaatttgcgttcggaactggcaaccatgggtgatcttaagctcgttgagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="58369" stop="61227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58669" g_stop="58833" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824">
            <donor d_prob="0.872" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60658" g_stop="60927" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="435" r_length="270" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E257777" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58669" e_stop="58833"/>
          <exon e_start="60658" e_stop="60927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAGGTTAGAAACTTCTATCTGAAACATGGCGTGTTTGGACGATGCAATAGGTTCTCTTTTCTAATTCCTGCTTATACTTCACTTGCTATCTACTGAAGATGTTAATTAGTAAACCTTTTGTTAACTGACCAGCATAACAGACAGTCTGATCTTGTATCCATACTCCTTAATCTGTCTTCGTTCAGGCCCTACATGGGTCATTCTCATCTTGTCTTATTTTTCCACCTTGCCGAACCACATACTCATCTGGGATTTTGGGTGTTTATTTCTGCCCGTTGAGGAAAAGAAAAGTAGTTTATTTCTGGTGTACCTCTGTGTTTTCATGGCTTAGTTTTTGTCTTTTATCTCCATGATAGTATTTCAATCAAATAATTAGAGTTATACATGTGTTTTGGTGAGTTTCTTTAAGCATGGGGAGTAAAAAATTGATGAAGTTTCCTTTAAAAAAGAATGTATTAGTTGTGATGCGTCTTTGTAATTTACCAGTAGAGTAAATTGGAAATCTTTCCCTAATTTATATGTGGTGCAAAAAATTGGACTTTCTAATACTGGCGGCACTTTCTGGAGTAAAACTTAACTTGCCTTGCACCTGACCTGTCTATACAAAGTAAGAAAAATTGAGCAATTACGTGAACTCTAATTTTGAGATTTTTGTTTTAGATTATGCTAACCGACTACATTTGGCATTTCTTTTAAAATTATTCTGGAAAACAGTTTTCTTGAGTCAAGGGTCTATCAGAAACAACCTCTTTACCCCTCAAAGACCGGGTTAAGGGTTGTGTAAACCCTCCCTCCCCCAGACCCTACTTGTAGCACTATACTGTGTATGTTGTTGTATTTGACTACATTTCACTTTAAATACACAACTGTAAGATCTCATTGGCAATTGATACTGTATCTTTTTCTTTCTTTCTAGCACCATTAAAATGGAGAAAAGTTTCACAGCGAAACAGATTCCTTTTGTTGTTTCTTGAGTCTTATTCAATTTAAAATGAATAGTTTTCTTTTCCAGCTAATTAAATAATATTTTCATTCTATATAACAAATAGAATAGGAAATAAATGTCACAAATATGGTTGTGTAGACAAATAACTCCAACTTCAAAAAATATGGTTGTAGAGACAAATAACTCTTCTTACTATATTACAGACTTAAATCTGTCCACGTATTAGAGGTTTGGGGTGTTTTTGGTGCCAATTGCGTTTTGAATCTCCAAAAATTGTGAATGAATGAAAGTGGACTTTGAGCCCCAAAAAGGTTGATAATTAGGTCATGTGGATCGTGGAAAGCACAAGCTTTTCCATCAACAACGTTGGTATTAAGACTTGAAGAGAAGGTCGTATGGTTGCACATGTTCCTAAGGTTATTGTATTATATGTGCAGCTAAAACGTGTAGGTCAAAATTACTTTTTGTTGCTATAGAGAAGGGGTAGAATACAATATGTAGGCTCTTTATCTATTAATATAACGAAGACATAATTTGCTCTGGTCCCCACTATGCAACCCCTTTCACCTTCTCTATTTGTCCTCCCTCTAAAGAATATTTGAGTTGTAACTAATTACACCTTATTCCTCTATCCCAAACAAGTTACAGTTGGCTATATATGAATCTTCACTATCCATGTCCTGCCTTAATTGAAATGAACCTATGTTACTTTAAGGCTCAAGTTTTTTTTTTTTTTCGTTCTCCTTATTTAACTAATCTGTGCAGTAATTTCTAAATCATGCGAGGGTTTGTCTAGTTAATTCATTTTTTTCTCCCTTGGTGCTTAGAATCAAAATGCAATAGTTGCTTCTCCATGTCCTAACTAAATATATGTATGCCAGGGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGT</genome_strand>
        <mrna_strand>GGCAATGAGGTTATGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATGTCTACCATTTGAAGAGTATGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCACGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAAGGTACTGCAGCTTACAGGATTGAGTGATCCTGTTTATGCTGAAGCATATGTGACAGGTCATCATTATGACATTGTCCTAGATGTTACCGTGATGAATCGAACCACAGAGACACTTCAGAATTTGCGTTCGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313161" ref_strand="+" ref_description="SGN-E313161 [cTOA-18-B3]">
      <seq>gagaggagatcaaagcaaaggcacaaatttctcgctcccagccagatgacctcattgatttctaccatttgaagagtaggaagggaatgagccaactggagttggaagatgaagtccaggatgatttgaaacgtgccactggagaattcgtcaaggatgagaatgatgctaataagctaagcagggtactgcagcttacaggatttagtgatcctgtttatgctgaagcatatgtaacagttcatcattatgacattgtcctagatgttaccgtgataaatcgaaccaaagagacacttcagaatttgtgtttggaactggcaaccatgggtgatcttaagctcgttgagcgtccacagaattatactatagctcctgagtcaagcaagcagataaaagctaatatcaaggtgtcttccaccgagactggagtgatttttggtaacattgtctatgagtcttcaaatgtgctcgagcgaactgttgttgtgctcaatgatatccatattgacatcatggattacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="58452" stop="61402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58751" g_stop="58833" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60658" g_stop="61102" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="528" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E313161" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58751" e_stop="58833"/>
          <exon e_start="60658" e_stop="61102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAGGTTAGAAACTTCTATCTGAAACATGGCGTGTTTGGACGATGCAATAGGTTCTCTTTTCTAATTCCTGCTTATACTTCACTTGCTATCTACTGAAGATGTTAATTAGTAAACCTTTTGTTAACTGACCAGCATAACAGACAGTCTGATCTTGTATCCATACTCCTTAATCTGTCTTCGTTCAGGCCCTACATGGGTCATTCTCATCTTGTCTTATTTTTCCACCTTGCCGAACCACATACTCATCTGGGATTTTGGGTGTTTATTTCTGCCCGTTGAGGAAAAGAAAAGTAGTTTATTTCTGGTGTACCTCTGTGTTTTCATGGCTTAGTTTTTGTCTTTTATCTCCATGATAGTATTTCAATCAAATAATTAGAGTTATACATGTGTTTTGGTGAGTTTCTTTAAGCATGGGGAGTAAAAAATTGATGAAGTTTCCTTTAAAAAAGAATGTATTAGTTGTGATGCGTCTTTGTAATTTACCAGTAGAGTAAATTGGAAATCTTTCCCTAATTTATATGTGGTGCAAAAAATTGGACTTTCTAATACTGGCGGCACTTTCTGGAGTAAAACTTAACTTGCCTTGCACCTGACCTGTCTATACAAAGTAAGAAAAATTGAGCAATTACGTGAACTCTAATTTTGAGATTTTTGTTTTAGATTATGCTAACCGACTACATTTGGCATTTCTTTTAAAATTATTCTGGAAAACAGTTTTCTTGAGTCAAGGGTCTATCAGAAACAACCTCTTTACCCCTCAAAGACCGGGTTAAGGGTTGTGTAAACCCTCCCTCCCCCAGACCCTACTTGTAGCACTATACTGTGTATGTTGTTGTATTTGACTACATTTCACTTTAAATACACAACTGTAAGATCTCATTGGCAATTGATACTGTATCTTTTTCTTTCTTTCTAGCACCATTAAAATGGAGAAAAGTTTCACAGCGAAACAGATTCCTTTTGTTGTTTCTTGAGTCTTATTCAATTTAAAATGAATAGTTTTCTTTTCCAGCTAATTAAATAATATTTTCATTCTATATAACAAATAGAATAGGAAATAAATGTCACAAATATGGTTGTGTAGACAAATAACTCCAACTTCAAAAAATATGGTTGTAGAGACAAATAACTCTTCTTACTATATTACAGACTTAAATCTGTCCACGTATTAGAGGTTTGGGGTGTTTTTGGTGCCAATTGCGTTTTGAATCTCCAAAAATTGTGAATGAATGAAAGTGGACTTTGAGCCCCAAAAAGGTTGATAATTAGGTCATGTGGATCGTGGAAAGCACAAGCTTTTCCATCAACAACGTTGGTATTAAGACTTGAAGAGAAGGTCGTATGGTTGCACATGTTCCTAAGGTTATTGTATTATATGTGCAGCTAAAACGTGTAGGTCAAAATTACTTTTTGTTGCTATAGAGAAGGGGTAGAATACAATATGTAGGCTCTTTATCTATTAATATAACGAAGACATAATTTGCTCTGGTCCCCACTATGCAACCCCTTTCACCTTCTCTATTTGTCCTCCCTCTAAAGAATATTTGAGTTGTAACTAATTACACCTTATTCCTCTATCCCAAACAAGTTACAGTTGGCTATATATGAATCTTCACTATCCATGTCCTGCCTTAATTGAAATGAACCTATGTTACTTTAAGGCTCAAGTTTTTTTTTTTTTTCGTTCTCCTTATTTAACTAATCTGTGCAGTAATTTCTAAATCATGCGAGGGTTTGTCTAGTTAATTCATTTTTTTCTCCCTTGGTGCTTAGAATCAAAATGCAATAGTTGCTTCTCCATGTCCTAACTAAATATATGTATGCCAGGGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCT</genome_strand>
        <mrna_strand>GAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248463" ref_strand="+" ref_description="SGN-E248463 [cLEF-59-B12]">
      <seq>aaaggcacaaatttctcgctcccagccagatgacctcattgatttctaccatttgaagagtaggaagggaatgagccaactggagttggaagatgaagtccaggatgatttgaaacgtgccactggagaattcgtcaaggatgagaatgatgctaataagctaagcagggtactgcagcttacaggatttagtgatcctgtttatgctgaagcatatgtaacagttcatcattatgacattgtcctagatgttaccgtgataaatcgaaccaaagagacacttcagaatttgtgtttggaactggcaaccatgggtgatcttaagctcgttgagcgtccacagaattatactatagctcctgagtcaagcaagcagataaaagctaatatcaaggtgtcttccaccgagactggagtgatttttggtaacattgtctatgagtcttcaaatgtgctcgagcgaactgttgttgtgctcaatgatatccatattgacatcatggattacatctctcctgctgtttgcagtgaggctgcttttagaactatgtgggctgaatttgagtgggaaaacaaggttgctgtcaacactgtcattcaagatgaaaaaggatttcttgaccatattatcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="58467" stop="62019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58767" g_stop="58833" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60658" g_stop="61167" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="577" r_length="510" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61168" i_stop="61660" i_length="493">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61661" g_stop="61719" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="636" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E248463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58767" e_stop="58833"/>
          <exon e_start="60658" e_stop="61167"/>
          <exon e_start="61661" e_stop="61719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAGGTTAGAAACTTCTATCTGAAACATGGCGTGTTTGGACGATGCAATAGGTTCTCTTTTCTAATTCCTGCTTATACTTCACTTGCTATCTACTGAAGATGTTAATTAGTAAACCTTTTGTTAACTGACCAGCATAACAGACAGTCTGATCTTGTATCCATACTCCTTAATCTGTCTTCGTTCAGGCCCTACATGGGTCATTCTCATCTTGTCTTATTTTTCCACCTTGCCGAACCACATACTCATCTGGGATTTTGGGTGTTTATTTCTGCCCGTTGAGGAAAAGAAAAGTAGTTTATTTCTGGTGTACCTCTGTGTTTTCATGGCTTAGTTTTTGTCTTTTATCTCCATGATAGTATTTCAATCAAATAATTAGAGTTATACATGTGTTTTGGTGAGTTTCTTTAAGCATGGGGAGTAAAAAATTGATGAAGTTTCCTTTAAAAAAGAATGTATTAGTTGTGATGCGTCTTTGTAATTTACCAGTAGAGTAAATTGGAAATCTTTCCCTAATTTATATGTGGTGCAAAAAATTGGACTTTCTAATACTGGCGGCACTTTCTGGAGTAAAACTTAACTTGCCTTGCACCTGACCTGTCTATACAAAGTAAGAAAAATTGAGCAATTACGTGAACTCTAATTTTGAGATTTTTGTTTTAGATTATGCTAACCGACTACATTTGGCATTTCTTTTAAAATTATTCTGGAAAACAGTTTTCTTGAGTCAAGGGTCTATCAGAAACAACCTCTTTACCCCTCAAAGACCGGGTTAAGGGTTGTGTAAACCCTCCCTCCCCCAGACCCTACTTGTAGCACTATACTGTGTATGTTGTTGTATTTGACTACATTTCACTTTAAATACACAACTGTAAGATCTCATTGGCAATTGATACTGTATCTTTTTCTTTCTTTCTAGCACCATTAAAATGGAGAAAAGTTTCACAGCGAAACAGATTCCTTTTGTTGTTTCTTGAGTCTTATTCAATTTAAAATGAATAGTTTTCTTTTCCAGCTAATTAAATAATATTTTCATTCTATATAACAAATAGAATAGGAAATAAATGTCACAAATATGGTTGTGTAGACAAATAACTCCAACTTCAAAAAATATGGTTGTAGAGACAAATAACTCTTCTTACTATATTACAGACTTAAATCTGTCCACGTATTAGAGGTTTGGGGTGTTTTTGGTGCCAATTGCGTTTTGAATCTCCAAAAATTGTGAATGAATGAAAGTGGACTTTGAGCCCCAAAAAGGTTGATAATTAGGTCATGTGGATCGTGGAAAGCACAAGCTTTTCCATCAACAACGTTGGTATTAAGACTTGAAGAGAAGGTCGTATGGTTGCACATGTTCCTAAGGTTATTGTATTATATGTGCAGCTAAAACGTGTAGGTCAAAATTACTTTTTGTTGCTATAGAGAAGGGGTAGAATACAATATGTAGGCTCTTTATCTATTAATATAACGAAGACATAATTTGCTCTGGTCCCCACTATGCAACCCCTTTCACCTTCTCTATTTGTCCTCCCTCTAAAGAATATTTGAGTTGTAACTAATTACACCTTATTCCTCTATCCCAAACAAGTTACAGTTGGCTATATATGAATCTTCACTATCCATGTCCTGCCTTAATTGAAATGAACCTATGTTACTTTAAGGCTCAAGTTTTTTTTTTTTTTCGTTCTCCTTATTTAACTAATCTGTGCAGTAATTTCTAAATCATGCGAGGGTTTGTCTAGTTAATTCATTTTTTTCTCCCTTGGTGCTTAGAATCAAAATGCAATAGTTGCTTCTCCATGTCCTAACTAAATATATGTATGCCAGGGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAGGTAGAATGCCATGCTTTATTATTTCACAATCATTTGATAGTTCTTTTTTTGCTGCTTCTAATTCTCTATGCCTTTTGATGTCATAAAAGATCCGTTCCTTTGAGTTGGAGAATTGAGACAAAGTCGTTCTCTTATGTTTTGATGAATCATGTCATATGATTTCTGGGTTTTTTTGGGTGCCTTCAAAATGGGTTACGAGTGGGTTTACCAATTCTTTTTCGGAAATTAGTGGTCCGAAGGTGATAGTTCTCTTGCTAGTATGTTTCTTTGATGTGTGTTCTTGAATCTTGATCTTTTAATGGAGTTGTTTGATTTAACAGGTACATTTGTGATTTGATGCTATTAGACTCTCGTGTGGACTTTTCTTTGTCCTACTGTGAAAATAACAGAGCAACAGACACATGAATTATAAATTTATGCACTGATGAATAGTCCAGACTGAAGTGGTCTGATCAAAACCATGAGCTCCTCAGGCTAATATTTTACTTTGCAGGTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATC</genome_strand>
        <mrna_strand>AAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207581" ref_strand="+" ref_description="SGN-E207581 [cLEC-32-K1]">
      <seq>aaggcgcaaatttctcgctccgagccagatgaccttattgatttctaccatttgaagagtatgaagggaatgagccaactggagttggaagatgaagtccaggatgatttgaaacgtgccactggagaattcgtcaaggatgagaatgatgctcataagctaagcagggtactgcagcttacaggatatagtgatcctgtttatgctgaagcatatgtaacagttcatcattatgacattggcctagatgtttccgcgataaatcgtaccagagagacacttcagaatttgtgtttggaactggcaaccatgggtgatcttaagctcggtgagcgtccacagaattatactatatctcctgagtgaagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="58468" stop="61263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58768" g_stop="58833" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824">
            <donor d_prob="0.872" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60658" g_stop="60963" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="372" r_length="306" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E207581" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58768" e_stop="58833"/>
          <exon e_start="60658" e_stop="60963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAGGTTAGAAACTTCTATCTGAAACATGGCGTGTTTGGACGATGCAATAGGTTCTCTTTTCTAATTCCTGCTTATACTTCACTTGCTATCTACTGAAGATGTTAATTAGTAAACCTTTTGTTAACTGACCAGCATAACAGACAGTCTGATCTTGTATCCATACTCCTTAATCTGTCTTCGTTCAGGCCCTACATGGGTCATTCTCATCTTGTCTTATTTTTCCACCTTGCCGAACCACATACTCATCTGGGATTTTGGGTGTTTATTTCTGCCCGTTGAGGAAAAGAAAAGTAGTTTATTTCTGGTGTACCTCTGTGTTTTCATGGCTTAGTTTTTGTCTTTTATCTCCATGATAGTATTTCAATCAAATAATTAGAGTTATACATGTGTTTTGGTGAGTTTCTTTAAGCATGGGGAGTAAAAAATTGATGAAGTTTCCTTTAAAAAAGAATGTATTAGTTGTGATGCGTCTTTGTAATTTACCAGTAGAGTAAATTGGAAATCTTTCCCTAATTTATATGTGGTGCAAAAAATTGGACTTTCTAATACTGGCGGCACTTTCTGGAGTAAAACTTAACTTGCCTTGCACCTGACCTGTCTATACAAAGTAAGAAAAATTGAGCAATTACGTGAACTCTAATTTTGAGATTTTTGTTTTAGATTATGCTAACCGACTACATTTGGCATTTCTTTTAAAATTATTCTGGAAAACAGTTTTCTTGAGTCAAGGGTCTATCAGAAACAACCTCTTTACCCCTCAAAGACCGGGTTAAGGGTTGTGTAAACCCTCCCTCCCCCAGACCCTACTTGTAGCACTATACTGTGTATGTTGTTGTATTTGACTACATTTCACTTTAAATACACAACTGTAAGATCTCATTGGCAATTGATACTGTATCTTTTTCTTTCTTTCTAGCACCATTAAAATGGAGAAAAGTTTCACAGCGAAACAGATTCCTTTTGTTGTTTCTTGAGTCTTATTCAATTTAAAATGAATAGTTTTCTTTTCCAGCTAATTAAATAATATTTTCATTCTATATAACAAATAGAATAGGAAATAAATGTCACAAATATGGTTGTGTAGACAAATAACTCCAACTTCAAAAAATATGGTTGTAGAGACAAATAACTCTTCTTACTATATTACAGACTTAAATCTGTCCACGTATTAGAGGTTTGGGGTGTTTTTGGTGCCAATTGCGTTTTGAATCTCCAAAAATTGTGAATGAATGAAAGTGGACTTTGAGCCCCAAAAAGGTTGATAATTAGGTCATGTGGATCGTGGAAAGCACAAGCTTTTCCATCAACAACGTTGGTATTAAGACTTGAAGAGAAGGTCGTATGGTTGCACATGTTCCTAAGGTTATTGTATTATATGTGCAGCTAAAACGTGTAGGTCAAAATTACTTTTTGTTGCTATAGAGAAGGGGTAGAATACAATATGTAGGCTCTTTATCTATTAATATAACGAAGACATAATTTGCTCTGGTCCCCACTATGCAACCCCTTTCACCTTCTCTATTTGTCCTCCCTCTAAAGAATATTTGAGTTGTAACTAATTACACCTTATTCCTCTATCCCAAACAAGTTACAGTTGGCTATATATGAATCTTCACTATCCATGTCCTGCCTTAATTGAAATGAACCTATGTTACTTTAAGGCTCAAGTTTTTTTTTTTTTTCGTTCTCCTTATTTAACTAATCTGTGCAGTAATTTCTAAATCATGCGAGGGTTTGTCTAGTTAATTCATTTTTTTCTCCCTTGGTGCTTAGAATCAAAATGCAATAGTTGCTTCTCCATGTCCTAACTAAATATATGTATGCCAGGGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAG</genome_strand>
        <mrna_strand>AAGGCGCAAATTTCTCGCTCCGAGCCAGATGACCTTATTGATTTCTACCATTTGAAGAGTATGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTCATAAGCTAAGCAGGGTACTGCAGCTTACAGGATATAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGGCCTAGATGTTTCCGCGATAAATCGTACCAGAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGGTGAGCGTCCACAGAATTATACTATATCTCCTGAGTGAAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710974" ref_strand="+" ref_description="SGN-E710974 [FA57CC07]">
      <seq>caaatttctcgctcccagccagatgacctcattgatttctaccatttgaagagtaggaagggaatgagccaactggagttggaagatgaagtccaggatgatttgaaacgtgccactggagaattcgtcaaggatgagaatgatgctaataagctaagcagggtactgcagcttacaggatttagtgatcctgtttatgctgaagcatatgtaacagttcatcattatgacattgtcctagatgttaccgtgataaatcgaaccaaagagacacttcagaatttgtgtttggaactggcaaccatgggtgatcttaagctcgttgagtgtccacagaattatactatagctcctgagtcaagcaagcagataaaagctaatatcaaggtgtcttccaccgagactggagtgatttttggtaacattgtctatgagtcttcaaatgtgctcgagcgaactgttgttgtgctcaatgatatccatattgacatcatggattacatctctcctgctgtttgcagtgaggctgcttttagaactatgtgggctgaatttgagtgggaaaacaaggttgctgtcaacactgtcattcaagatgaaaaaggatttcttgaccatattatcaaatcaaccaacatgaagtgtctgactgcaccatctgctctggaagatgaatgtggattccttgctgctaatctttatgcaaagagtgtgtttggagaggatgctttggtgaatttgagcattgaaaagcaatcagatggtaagctgagtggttatattagaataagaagccaaacacaaggaattgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="58474" stop="62904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58774" g_stop="58833" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60658" g_stop="61167" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="570" r_length="510" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61168" i_stop="61660" i_length="493">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61661" g_stop="61746" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="656" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61747" i_stop="62445" i_length="699">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62446" g_stop="62604" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="815" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E710974" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58774" e_stop="58833"/>
          <exon e_start="60658" e_stop="61167"/>
          <exon e_start="61661" e_stop="61746"/>
          <exon e_start="62446" e_stop="62604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAGGTTAGAAACTTCTATCTGAAACATGGCGTGTTTGGACGATGCAATAGGTTCTCTTTTCTAATTCCTGCTTATACTTCACTTGCTATCTACTGAAGATGTTAATTAGTAAACCTTTTGTTAACTGACCAGCATAACAGACAGTCTGATCTTGTATCCATACTCCTTAATCTGTCTTCGTTCAGGCCCTACATGGGTCATTCTCATCTTGTCTTATTTTTCCACCTTGCCGAACCACATACTCATCTGGGATTTTGGGTGTTTATTTCTGCCCGTTGAGGAAAAGAAAAGTAGTTTATTTCTGGTGTACCTCTGTGTTTTCATGGCTTAGTTTTTGTCTTTTATCTCCATGATAGTATTTCAATCAAATAATTAGAGTTATACATGTGTTTTGGTGAGTTTCTTTAAGCATGGGGAGTAAAAAATTGATGAAGTTTCCTTTAAAAAAGAATGTATTAGTTGTGATGCGTCTTTGTAATTTACCAGTAGAGTAAATTGGAAATCTTTCCCTAATTTATATGTGGTGCAAAAAATTGGACTTTCTAATACTGGCGGCACTTTCTGGAGTAAAACTTAACTTGCCTTGCACCTGACCTGTCTATACAAAGTAAGAAAAATTGAGCAATTACGTGAACTCTAATTTTGAGATTTTTGTTTTAGATTATGCTAACCGACTACATTTGGCATTTCTTTTAAAATTATTCTGGAAAACAGTTTTCTTGAGTCAAGGGTCTATCAGAAACAACCTCTTTACCCCTCAAAGACCGGGTTAAGGGTTGTGTAAACCCTCCCTCCCCCAGACCCTACTTGTAGCACTATACTGTGTATGTTGTTGTATTTGACTACATTTCACTTTAAATACACAACTGTAAGATCTCATTGGCAATTGATACTGTATCTTTTTCTTTCTTTCTAGCACCATTAAAATGGAGAAAAGTTTCACAGCGAAACAGATTCCTTTTGTTGTTTCTTGAGTCTTATTCAATTTAAAATGAATAGTTTTCTTTTCCAGCTAATTAAATAATATTTTCATTCTATATAACAAATAGAATAGGAAATAAATGTCACAAATATGGTTGTGTAGACAAATAACTCCAACTTCAAAAAATATGGTTGTAGAGACAAATAACTCTTCTTACTATATTACAGACTTAAATCTGTCCACGTATTAGAGGTTTGGGGTGTTTTTGGTGCCAATTGCGTTTTGAATCTCCAAAAATTGTGAATGAATGAAAGTGGACTTTGAGCCCCAAAAAGGTTGATAATTAGGTCATGTGGATCGTGGAAAGCACAAGCTTTTCCATCAACAACGTTGGTATTAAGACTTGAAGAGAAGGTCGTATGGTTGCACATGTTCCTAAGGTTATTGTATTATATGTGCAGCTAAAACGTGTAGGTCAAAATTACTTTTTGTTGCTATAGAGAAGGGGTAGAATACAATATGTAGGCTCTTTATCTATTAATATAACGAAGACATAATTTGCTCTGGTCCCCACTATGCAACCCCTTTCACCTTCTCTATTTGTCCTCCCTCTAAAGAATATTTGAGTTGTAACTAATTACACCTTATTCCTCTATCCCAAACAAGTTACAGTTGGCTATATATGAATCTTCACTATCCATGTCCTGCCTTAATTGAAATGAACCTATGTTACTTTAAGGCTCAAGTTTTTTTTTTTTTTCGTTCTCCTTATTTAACTAATCTGTGCAGTAATTTCTAAATCATGCGAGGGTTTGTCTAGTTAATTCATTTTTTTCTCCCTTGGTGCTTAGAATCAAAATGCAATAGTTGCTTCTCCATGTCCTAACTAAATATATGTATGCCAGGGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAGGTAGAATGCCATGCTTTATTATTTCACAATCATTTGATAGTTCTTTTTTTGCTGCTTCTAATTCTCTATGCCTTTTGATGTCATAAAAGATCCGTTCCTTTGAGTTGGAGAATTGAGACAAAGTCGTTCTCTTATGTTTTGATGAATCATGTCATATGATTTCTGGGTTTTTTTGGGTGCCTTCAAAATGGGTTACGAGTGGGTTTACCAATTCTTTTTCGGAAATTAGTGGTCCGAAGGTGATAGTTCTCTTGCTAGTATGTTTCTTTGATGTGTGTTCTTGAATCTTGATCTTTTAATGGAGTTGTTTGATTTAACAGGTACATTTGTGATTTGATGCTATTAGACTCTCGTGTGGACTTTTCTTTGTCCTACTGTGAAAATAACAGAGCAACAGACACATGAATTATAAATTTATGCACTGATGAATAGTCCAGACTGAAGTGGTCTGATCAAAACCATGAGCTCCTCAGGCTAATATTTTACTTTGCAGGTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACCGTGAGTTCTCTGGTCACTCGCTACGTGCTATATTATGGTTATTGCTGTTTGATCATTTCTTTTTAATTTGCATTTTCTTATTTCTTATTTTGTTTTTATTGATATCAAATATAATTTACATTGTAGAGTGTGTATATTCTCCATAGACAGCATTTGTTTAACTGTATGCAATGCTGCGAACTGTTGGAACAAGCCTCATTTTTTTACTCCCGTAGAGTTTTTAACTTCATCTACCAGAATCATATTGTGCTGACCAAGAAATGAGATTCTTTTTTCCAAATTAGATTTGTCTAGTACTCTTCTAATTGAGGGTTACTACTTAGTTTCTTTTCTATCATCTCGAGATCAGTTTCTTTATTGTAACAGTTTTTCATCTACACTTGTTGAGTGTATTTTAATTGCACCAAATGTAGAAGATATATCAAGTAGATGTTTTGTTTTTCACTTGCTGCATATGTGAGGCCGTATTCAGTATACATCTCTGGATGTGTGTGTGCACTTGTGTAAATGTGTGTCGAAATATATATATTCAAGTTCCTTGTAGAACGTAGAAGTTACCTGTGAGTTGATTTATCAAGAGAAAGAAGTACCGTGTTACTTGTTTGTTGCTTTAAGTCATTTAAGTCCTGTTTCCTTATGGTACATGGCTGCTGATCAATGTATAACTTTTACGGTATTTGCTTTCGTACATAATTCCAGATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCT</genome_strand>
        <mrna_strand>CAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGTGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCCAAACACAAGGAATTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702755" ref_strand="+" ref_description="SGN-E702755 [FA19CD10]">
      <seq>gagaatgatgctaataagctaagcagggtactgcagcttacaggatttagtgatcctgtttatgctgaagcatatgtaacagttcatcattatgacattgtcctagatgttaccgtgataaatcgaaccaaagagacacttcagaatttgtgtttggaactggcaaccatgggtgatcttaagctcgttgagcgtccacagaattatactatagctcctgagtcaagcaagcagataaaagctaatatcaaggtgtcttccaccgagactggagtgatttttggtaacattgtctatgagtcttcaaatgtgctcgagcgaactgttgttgtgctcaatgatatccatattgacatcatggattacatctctcctgctgtttgcagtgaggctgcttttagaactatgtgggctgaatttgagtgggaaaacaaggttgctgtcaacactgtcattcaagatgaaaaaggatttcttgaccatattatcaaatcaaccaacatgaagtgtctgactgcaccatctgctctggaagatgaatgtggattccttgctgctaatctttatgcaaagagtgtgtttggagaggatgctttggtgaatttgagcattgaaaagcaatcagatggtaagctgagtggttatattagaataagaagcaaaacacaaggaattgctcttagcttgggagacaaaataacactcaagcagaagggaggcaattgatcttattgtgttgttatggtcctctcctagacagcaaaggtcattaaaacatgaaactgagactccttcacatctcccatttgtagcttggaggagtgctggggttattgagttaaaaacctgtagaaattgtattactgcacttacttttagattcggatccgcgaaattcgagcattttactctttcttgaggacatttttttgtagagaaattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="60433" stop="63578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60733" g_stop="61167" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61660" i_length="493">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61661" g_stop="61746" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="521" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61747" i_stop="62445" i_length="699">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62446" g_stop="62689" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="765" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62690" i_stop="63096" i_length="407">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63097" g_stop="63278" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="946" r_length="181" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E702755" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>947</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60733" e_stop="61167"/>
          <exon e_start="61661" e_stop="61746"/>
          <exon e_start="62446" e_stop="62689"/>
          <exon e_start="63097" e_stop="63278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAGGTAGAATGCCATGCTTTATTATTTCACAATCATTTGATAGTTCTTTTTTTGCTGCTTCTAATTCTCTATGCCTTTTGATGTCATAAAAGATCCGTTCCTTTGAGTTGGAGAATTGAGACAAAGTCGTTCTCTTATGTTTTGATGAATCATGTCATATGATTTCTGGGTTTTTTTGGGTGCCTTCAAAATGGGTTACGAGTGGGTTTACCAATTCTTTTTCGGAAATTAGTGGTCCGAAGGTGATAGTTCTCTTGCTAGTATGTTTCTTTGATGTGTGTTCTTGAATCTTGATCTTTTAATGGAGTTGTTTGATTTAACAGGTACATTTGTGATTTGATGCTATTAGACTCTCGTGTGGACTTTTCTTTGTCCTACTGTGAAAATAACAGAGCAACAGACACATGAATTATAAATTTATGCACTGATGAATAGTCCAGACTGAAGTGGTCTGATCAAAACCATGAGCTCCTCAGGCTAATATTTTACTTTGCAGGTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACCGTGAGTTCTCTGGTCACTCGCTACGTGCTATATTATGGTTATTGCTGTTTGATCATTTCTTTTTAATTTGCATTTTCTTATTTCTTATTTTGTTTTTATTGATATCAAATATAATTTACATTGTAGAGTGTGTATATTCTCCATAGACAGCATTTGTTTAACTGTATGCAATGCTGCGAACTGTTGGAACAAGCCTCATTTTTTTACTCCCGTAGAGTTTTTAACTTCATCTACCAGAATCATATTGTGCTGACCAAGAAATGAGATTCTTTTTTCCAAATTAGATTTGTCTAGTACTCTTCTAATTGAGGGTTACTACTTAGTTTCTTTTCTATCATCTCGAGATCAGTTTCTTTATTGTAACAGTTTTTCATCTACACTTGTTGAGTGTATTTTAATTGCACCAAATGTAGAAGATATATCAAGTAGATGTTTTGTTTTTCACTTGCTGCATATGTGAGGCCGTATTCAGTATACATCTCTGGATGTGTGTGTGCACTTGTGTAAATGTGTGTCGAAATATATATATTCAAGTTCCTTGTAGAACGTAGAAGTTACCTGTGAGTTGATTTATCAAGAGAAAGAAGTACCGTGTTACTTGTTTGTTGCTTTAAGTCATTTAAGTCCTGTTTCCTTATGGTACATGGCTGCTGATCAATGTATAACTTTTACGGTATTTGCTTTCGTACATAATTCCAGATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAGGTACCCTACTTCATCTATAAAGACATTTTACAACTTCCTTGTCTTTGCCTCATATGTTTCCATTGAATCGTTAGTTTAGGTGGGCTTTTCTTTTCTGCAGTTTCTGGAAAACCACACGGAAACGTATACAAAATACCTATATATTAGAAGTGTGTTTTAGATATCACTCCCTGGGTACCCTTTTCTTTTAACTTCTGAACGTAGTAACTTTACTCCCTGGTACCATTTTAATGTGACACAGATAAGAGTTGTTAATTGTATCAGTCTCAGTTGAAGTAATTGGTTAACGATATGCTGAACAAGTTTGTTCGACTAGGAACTCATCGCATTGTTTACTAACATAGGTGTCGTTCTCTAGATGGATAGCATCTTTGAGTTACCCTCTAATCGGTTTTCACTATTTGCAGGTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAA</genome_strand>
        <mrna_strand>GAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTTCTTGAGGACATTTTTTTGTAGAG-AAATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253734" ref_strand="+" ref_description="SGN-E253734 [cLEG-32-O5]">
      <seq>cattatgacattgggctagatgttaccgtgataaatcgaaccaaatagacacttcaaaatttgtgtttggaactggcaaccatgggtgatcttaagctcgttgagcgttcacagaattatactatacctcctgagtcaagctagcggataaaagctaatatcaaggtgtcttccaccgagactggagtgatttttggtaacattgtctatgagtcttcaaatgtgctcgagcgaactgttgttgtgctcaatgatatccatattgacatcatggattacatctctcctgctgtttgcagtgaggctgcttttagaactatgtgggctgaatttgagtgggaaaacaaggttgctgtcaacactgtcattcaagatgaaaaaggatttcttgaccatattatcaaatcaaccaacatgaagtgtctgactgcaccatctgctctggaagatgaatgtggattccttgctgctaatctttatgcaaagagtgtgtttggagaggatgctttggtgaatttgagcattgaaaagcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="60520" stop="62847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60820" g_stop="61167" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61660" i_length="493">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61661" g_stop="61746" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="434" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61747" i_stop="62445" i_length="699">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62446" g_stop="62547" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="536" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E253734" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60820" e_stop="61167"/>
          <exon e_start="61661" e_stop="61746"/>
          <exon e_start="62446" e_stop="62547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAGGTAGAATGCCATGCTTTATTATTTCACAATCATTTGATAGTTCTTTTTTTGCTGCTTCTAATTCTCTATGCCTTTTGATGTCATAAAAGATCCGTTCCTTTGAGTTGGAGAATTGAGACAAAGTCGTTCTCTTATGTTTTGATGAATCATGTCATATGATTTCTGGGTTTTTTTGGGTGCCTTCAAAATGGGTTACGAGTGGGTTTACCAATTCTTTTTCGGAAATTAGTGGTCCGAAGGTGATAGTTCTCTTGCTAGTATGTTTCTTTGATGTGTGTTCTTGAATCTTGATCTTTTAATGGAGTTGTTTGATTTAACAGGTACATTTGTGATTTGATGCTATTAGACTCTCGTGTGGACTTTTCTTTGTCCTACTGTGAAAATAACAGAGCAACAGACACATGAATTATAAATTTATGCACTGATGAATAGTCCAGACTGAAGTGGTCTGATCAAAACCATGAGCTCCTCAGGCTAATATTTTACTTTGCAGGTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACCGTGAGTTCTCTGGTCACTCGCTACGTGCTATATTATGGTTATTGCTGTTTGATCATTTCTTTTTAATTTGCATTTTCTTATTTCTTATTTTGTTTTTATTGATATCAAATATAATTTACATTGTAGAGTGTGTATATTCTCCATAGACAGCATTTGTTTAACTGTATGCAATGCTGCGAACTGTTGGAACAAGCCTCATTTTTTTACTCCCGTAGAGTTTTTAACTTCATCTACCAGAATCATATTGTGCTGACCAAGAAATGAGATTCTTTTTTCCAAATTAGATTTGTCTAGTACTCTTCTAATTGAGGGTTACTACTTAGTTTCTTTTCTATCATCTCGAGATCAGTTTCTTTATTGTAACAGTTTTTCATCTACACTTGTTGAGTGTATTTTAATTGCACCAAATGTAGAAGATATATCAAGTAGATGTTTTGTTTTTCACTTGCTGCATATGTGAGGCCGTATTCAGTATACATCTCTGGATGTGTGTGTGCACTTGTGTAAATGTGTGTCGAAATATATATATTCAAGTTCCTTGTAGAACGTAGAAGTTACCTGTGAGTTGATTTATCAAGAGAAAGAAGTACCGTGTTACTTGTTTGTTGCTTTAAGTCATTTAAGTCCTGTTTCCTTATGGTACATGGCTGCTGATCAATGTATAACTTTTACGGTATTTGCTTTCGTACATAATTCCAGATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATC</genome_strand>
        <mrna_strand>CATTATGACATTGGGCTAGATGTTACCGTGATAAATCGAACCAAATAGACACTTCAAAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTTCACAGAATTATACTATACCTCCTGAGTCAAGCTAGCGGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253930" ref_strand="+" ref_description="SGN-E253930 [cLEG-28-D21]">
      <seq>tctcctgctgtttgcagtgaggctgcttttagaactatgtgggctgaatttgagtgggaaaacaagggggctgtcaacactgtcattcaagatgaaaaaggatttcttgaccatattatcaaatcaaccaacatgaagtgtctgactgcaccatctgctctggaagatgaatgtggattccttgctgctaatctttatgcaaagagtgtgtttggagaggatgctttggtgaatttgagcattgaaaagcaatcagatggtaagctgagtggttatattagaataagaagcaaaacacaaggaattgctcttagcttgggagacaaaataacactcaagcagaagggaggcaattgatcttattgtgttgttatggtcctctcctagacagcaaaggtcattaaaacatgaaactgagactccttcacatctcccatttgtagcttggaggagtgctggggttattgagttaaaaacctgtagaaattgtattactgcacttactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="60802" stop="63509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61102" g_stop="61167" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61660" i_length="493">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61661" g_stop="61746" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="152" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61747" i_stop="62445" i_length="699">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62446" g_stop="62689" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="396" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62690" i_stop="63096" i_length="407">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63097" g_stop="63209" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="509" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E253930" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61102" e_stop="61167"/>
          <exon e_start="61661" e_stop="61746"/>
          <exon e_start="62446" e_stop="62689"/>
          <exon e_start="63097" e_stop="63209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAGGTAGAATGCCATGCTTTATTATTTCACAATCATTTGATAGTTCTTTTTTTGCTGCTTCTAATTCTCTATGCCTTTTGATGTCATAAAAGATCCGTTCCTTTGAGTTGGAGAATTGAGACAAAGTCGTTCTCTTATGTTTTGATGAATCATGTCATATGATTTCTGGGTTTTTTTGGGTGCCTTCAAAATGGGTTACGAGTGGGTTTACCAATTCTTTTTCGGAAATTAGTGGTCCGAAGGTGATAGTTCTCTTGCTAGTATGTTTCTTTGATGTGTGTTCTTGAATCTTGATCTTTTAATGGAGTTGTTTGATTTAACAGGTACATTTGTGATTTGATGCTATTAGACTCTCGTGTGGACTTTTCTTTGTCCTACTGTGAAAATAACAGAGCAACAGACACATGAATTATAAATTTATGCACTGATGAATAGTCCAGACTGAAGTGGTCTGATCAAAACCATGAGCTCCTCAGGCTAATATTTTACTTTGCAGGTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACCGTGAGTTCTCTGGTCACTCGCTACGTGCTATATTATGGTTATTGCTGTTTGATCATTTCTTTTTAATTTGCATTTTCTTATTTCTTATTTTGTTTTTATTGATATCAAATATAATTTACATTGTAGAGTGTGTATATTCTCCATAGACAGCATTTGTTTAACTGTATGCAATGCTGCGAACTGTTGGAACAAGCCTCATTTTTTTACTCCCGTAGAGTTTTTAACTTCATCTACCAGAATCATATTGTGCTGACCAAGAAATGAGATTCTTTTTTCCAAATTAGATTTGTCTAGTACTCTTCTAATTGAGGGTTACTACTTAGTTTCTTTTCTATCATCTCGAGATCAGTTTCTTTATTGTAACAGTTTTTCATCTACACTTGTTGAGTGTATTTTAATTGCACCAAATGTAGAAGATATATCAAGTAGATGTTTTGTTTTTCACTTGCTGCATATGTGAGGCCGTATTCAGTATACATCTCTGGATGTGTGTGTGCACTTGTGTAAATGTGTGTCGAAATATATATATTCAAGTTCCTTGTAGAACGTAGAAGTTACCTGTGAGTTGATTTATCAAGAGAAAGAAGTACCGTGTTACTTGTTTGTTGCTTTAAGTCATTTAAGTCCTGTTTCCTTATGGTACATGGCTGCTGATCAATGTATAACTTTTACGGTATTTGCTTTCGTACATAATTCCAGATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAGGTACCCTACTTCATCTATAAAGACATTTTACAACTTCCTTGTCTTTGCCTCATATGTTTCCATTGAATCGTTAGTTTAGGTGGGCTTTTCTTTTCTGCAGTTTCTGGAAAACCACACGGAAACGTATACAAAATACCTATATATTAGAAGTGTGTTTTAGATATCACTCCCTGGGTACCCTTTTCTTTTAACTTCTGAACGTAGTAACTTTACTCCCTGGTACCATTTTAATGTGACACAGATAAGAGTTGTTAATTGTATCAGTCTCAGTTGAAGTAATTGGTTAACGATATGCTGAACAAGTTTGTTCGACTAGGAACTCATCGCATTGTTTACTAACATAGGTGTCGTTCTCTAGATGGATAGCATCTTTGAGTTACCCTCTAATCGGTTTTCACTATTTGCAGGTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTA</genome_strand>
        <mrna_strand>TCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258989" ref_strand="+" ref_description="SGN-E258989 [cLEG-41-L18]">
      <seq>tctcctgctgtttgcagtgaggctgcttttagaactatgtgggctgaatttgagtgggaaaacaaggttgctgtcaacactgtcattcaagatgaaaaaggatttcttgaccatattatcaaatcaaccaacatgaagtgtctgactgcaccatctgctctggaagatgaatgtggattccttgctgctaatctttatgcaaagagtgtgtttggagaggatgctttggtgaatttgagcattgaaaagcaatcagatggtaagctgagtggttatattagaataagaagcaaaacacaaggaattgctcttagcttgggagacaaaataacactcaagcagaagggaggcaattgatcttattgtgttgttatggtcctctcctagacagcaaaggtcattaaaacatgaaactgagactccttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="60802" stop="63429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61102" g_stop="61167" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61660" i_length="493">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61661" g_stop="61746" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="152" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61747" i_stop="62445" i_length="699">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62446" g_stop="62689" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="396" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62690" i_stop="63096" i_length="407">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63097" g_stop="63129" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="429" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E258989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61102" e_stop="61167"/>
          <exon e_start="61661" e_stop="61746"/>
          <exon e_start="62446" e_stop="62689"/>
          <exon e_start="63097" e_stop="63129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAGGTAGAATGCCATGCTTTATTATTTCACAATCATTTGATAGTTCTTTTTTTGCTGCTTCTAATTCTCTATGCCTTTTGATGTCATAAAAGATCCGTTCCTTTGAGTTGGAGAATTGAGACAAAGTCGTTCTCTTATGTTTTGATGAATCATGTCATATGATTTCTGGGTTTTTTTGGGTGCCTTCAAAATGGGTTACGAGTGGGTTTACCAATTCTTTTTCGGAAATTAGTGGTCCGAAGGTGATAGTTCTCTTGCTAGTATGTTTCTTTGATGTGTGTTCTTGAATCTTGATCTTTTAATGGAGTTGTTTGATTTAACAGGTACATTTGTGATTTGATGCTATTAGACTCTCGTGTGGACTTTTCTTTGTCCTACTGTGAAAATAACAGAGCAACAGACACATGAATTATAAATTTATGCACTGATGAATAGTCCAGACTGAAGTGGTCTGATCAAAACCATGAGCTCCTCAGGCTAATATTTTACTTTGCAGGTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACCGTGAGTTCTCTGGTCACTCGCTACGTGCTATATTATGGTTATTGCTGTTTGATCATTTCTTTTTAATTTGCATTTTCTTATTTCTTATTTTGTTTTTATTGATATCAAATATAATTTACATTGTAGAGTGTGTATATTCTCCATAGACAGCATTTGTTTAACTGTATGCAATGCTGCGAACTGTTGGAACAAGCCTCATTTTTTTACTCCCGTAGAGTTTTTAACTTCATCTACCAGAATCATATTGTGCTGACCAAGAAATGAGATTCTTTTTTCCAAATTAGATTTGTCTAGTACTCTTCTAATTGAGGGTTACTACTTAGTTTCTTTTCTATCATCTCGAGATCAGTTTCTTTATTGTAACAGTTTTTCATCTACACTTGTTGAGTGTATTTTAATTGCACCAAATGTAGAAGATATATCAAGTAGATGTTTTGTTTTTCACTTGCTGCATATGTGAGGCCGTATTCAGTATACATCTCTGGATGTGTGTGTGCACTTGTGTAAATGTGTGTCGAAATATATATATTCAAGTTCCTTGTAGAACGTAGAAGTTACCTGTGAGTTGATTTATCAAGAGAAAGAAGTACCGTGTTACTTGTTTGTTGCTTTAAGTCATTTAAGTCCTGTTTCCTTATGGTACATGGCTGCTGATCAATGTATAACTTTTACGGTATTTGCTTTCGTACATAATTCCAGATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAGGTACCCTACTTCATCTATAAAGACATTTTACAACTTCCTTGTCTTTGCCTCATATGTTTCCATTGAATCGTTAGTTTAGGTGGGCTTTTCTTTTCTGCAGTTTCTGGAAAACCACACGGAAACGTATACAAAATACCTATATATTAGAAGTGTGTTTTAGATATCACTCCCTGGGTACCCTTTTCTTTTAACTTCTGAACGTAGTAACTTTACTCCCTGGTACCATTTTAATGTGACACAGATAAGAGTTGTTAATTGTATCAGTCTCAGTTGAAGTAATTGGTTAACGATATGCTGAACAAGTTTGTTCGACTAGGAACTCATCGCATTGTTTACTAACATAGGTGTCGTTCTCTAGATGGATAGCATCTTTGAGTTACCCTCTAATCGGTTTTCACTATTTGCAGGTCATTAAAACATGAAACTGAGACTCCTTCACA</genome_strand>
        <mrna_strand>TCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTAAAACATGAAACTGAGACTCCTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545000" ref_strand="+" ref_description="SGN-E545000 [TUS-67-J24](-)">
      <seq>aaagagtgtgtttggagaggatgctttggtgaatttgagcattgaaaagcaatcagatggtaagctgaggggttatattggaataggaggcaaaccccagggaattgtttttagcttgggagacaaaataacactcaagcagagggggggcaatggatcttatggggttgttagggtcctctccaagacagcaagggtctttaaaacatgaaagtgggactccttcacatttcccatttgtagcttgggggagtgcgggggttattgagttaaaaccctgtagaaattgtattactgcacttacttttagattgggatccgcgaaattcgagcattttatttttttttggggacattttttggtagagaaaattggaaagagagtagggctgctttatctctgggttgaaagttaactgaatttggtacaagccactctttgcttgttactttctgttaacttccaattcctgatttccattttttttttttgtaaacaaaggtcaactcagtttccattgccatattatatattgaaattttgggctttcttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="62194" stop="63755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62494" g_stop="62689" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62690" i_stop="63096" i_length="407">
            <donor d_prob="0.962" d_score="0.86"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63097" g_stop="63448" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="549" r_length="353" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="604"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E545000" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62494" e_stop="62689"/>
          <exon e_start="63097" e_stop="63448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAGGTACCCTACTTCATCTATAAAGACATTTTACAACTTCCTTGTCTTTGCCTCATATGTTTCCATTGAATCGTTAGTTTAGGTGGGCTTTTCTTTTCTGCAGTTTCTGGAAAACCACACGGAAACGTATACAAAATACCTATATATTAGAAGTGTGTTTTAGATATCACTCCCTGGGTACCCTTTTCTTTTAACTTCTGAACGTAGTAACTTTACTCCCTGGTACCATTTTAATGTGACACAGATAAGAGTTGTTAATTGTATCAGTCTCAGTTGAAGTAATTGGTTAACGATATGCTGAACAAGTTTGTTCGACTAGGAACTCATCGCATTGTTTACTAACATAGGTGTCGTTCTCTAGATGGATAGCATCTTTGAGTTACCCTCTAATCGGTTTTCACTATTTGCAGGTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAAAGAGAGTAGTGCTGCTTTATCTCTGTGTTGTAAGTTAACTGAATTTGGTACAAGTCACTCTTTGCTTGTTACTTTCTGTTAACTTCCAATTCCTGATTTCCA-TTTTTTTTTTTGTAAACAAAGGTCAACTCAGTTTCCATTGCCATATTATATATTGAAATTTTAGGCTT</genome_strand>
        <mrna_strand>AAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGGGGTTATATTGGAATAGGAGGCAAACCCCAGGGAATTGTTTTTAGCTTGGGAGACAAAATAACACTCAAGCAGAGGGGGGGCAATGGATCTTATGGGGTTGTTAGGGTCCTCTCCAAGACAGCAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTAAAACATGAAAGTGGGACTCCTTCACATTTCCCATTTGTAGCTTGGGGGAGTGCGGGGGTTATTGAGTTAAAACCCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTGGGATCCGCGAAATTCGAGCATTTTATTTTTTTTTGGGGACATTTTTTGGTAGAGAAAATTGGAAAGAGAGTAGGGCTGCTTTATCTCTGGGTTGAAAGTTAACTGAATTTGGTACAAGCCACTCTTTGCTTGTTACTTTCTGTTAACTTCCAATTCCTGATTTCCATTTTTTTTTTTTGTAAACAAAGGTCAACTCAGTTTCCATTGCCATATTATATATTGAAATTTTGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222014" ref_strand="+" ref_description="SGN-E222014 [cLEL-10-F24](-)">
      <seq>aatcagatggtaagctgagtggttatattagaataaaaagcaaaacccaaggaattgctcttagcttgggagacaaaataacactcaagcagaagggaggcaattgatcttattgtgttgttatggtcctctcctagacagcaaaggtcattaaaacatgaaactgagactccttcacatctcccatttgtagcttggaggagtgctggggttattcagttaaaaacctgtagaaattgtattactgcacttacttttagattcggatccgcgaaattcgagcattttactcttctttgaggacattttttggtagagaaaattggaaaaagagtagtgctgctttatctctgtgttgtaagttaactgaatttggtacaagtcactctttgcttgttactttctgttaacttcccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="62244" stop="63667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62544" g_stop="62689" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62690" i_stop="63096" i_length="407">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63097" g_stop="63366" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="416" r_length="270" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="435"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E222014" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62544" e_stop="62689"/>
          <exon e_start="63097" e_stop="63366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAGGTACCCTACTTCATCTATAAAGACATTTTACAACTTCCTTGTCTTTGCCTCATATGTTTCCATTGAATCGTTAGTTTAGGTGGGCTTTTCTTTTCTGCAGTTTCTGGAAAACCACACGGAAACGTATACAAAATACCTATATATTAGAAGTGTGTTTTAGATATCACTCCCTGGGTACCCTTTTCTTTTAACTTCTGAACGTAGTAACTTTACTCCCTGGTACCATTTTAATGTGACACAGATAAGAGTTGTTAATTGTATCAGTCTCAGTTGAAGTAATTGGTTAACGATATGCTGAACAAGTTTGTTCGACTAGGAACTCATCGCATTGTTTACTAACATAGGTGTCGTTCTCTAGATGGATAGCATCTTTGAGTTACCCTCTAATCGGTTTTCACTATTTGCAGGTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAAAGAGAGTAGTGCTGCTTTATCTCTGTGTTGTAAGTTAACTGAATTTGGTACAAGTCACTCTTTGCTTGTTACTTTCTGTTAACTTCCA</genome_strand>
        <mrna_strand>AATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAAAAGCAAAACCCAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTCAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAAAAAGAGTAGTGCTGCTTTATCTCTGTGTTGTAAGTTAACTGAATTTGGTACAAGTCACTCTTTGCTTGTTACTTTCTGTTAACTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221439" ref_strand="+" ref_description="SGN-E221439 [cLEL-10-F24](-)">
      <seq>ctcttagcttgggagacaaaataacactcaacagaagggaggcaattgatcttattgtgttgttatggtcctctcctagacagcaaaggtcattaaaacatgaaactgagactccttcacatctcccatttgtagcttggaggagtgctggggttattgagttaaaaacctgtagaaattgtattactgcacttacttttagattcggatccgcgaaattcgagcattttactcttctttgaggacattttttggtagagaaaattggaaagagagtagtgctgctttatctctgtgttgtaagttaactgaatttggtacaagtcactctttgcttgttactttctgttaacttccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="62301" stop="63667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62601" g_stop="62689" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62690" i_stop="63096" i_length="407">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63097" g_stop="63366" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="358" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="377"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E221439" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62601" e_stop="62689"/>
          <exon e_start="63097" e_stop="63366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAGGTACCCTACTTCATCTATAAAGACATTTTACAACTTCCTTGTCTTTGCCTCATATGTTTCCATTGAATCGTTAGTTTAGGTGGGCTTTTCTTTTCTGCAGTTTCTGGAAAACCACACGGAAACGTATACAAAATACCTATATATTAGAAGTGTGTTTTAGATATCACTCCCTGGGTACCCTTTTCTTTTAACTTCTGAACGTAGTAACTTTACTCCCTGGTACCATTTTAATGTGACACAGATAAGAGTTGTTAATTGTATCAGTCTCAGTTGAAGTAATTGGTTAACGATATGCTGAACAAGTTTGTTCGACTAGGAACTCATCGCATTGTTTACTAACATAGGTGTCGTTCTCTAGATGGATAGCATCTTTGAGTTACCCTCTAATCGGTTTTCACTATTTGCAGGTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAAAGAGAGTAGTGCTGCTTTATCTCTGTGTTGTAAGTTAACTGAATTTGGTACAAGTCACTCTTTGCTTGTTACTTTCTGTTAACTTCCA</genome_strand>
        <mrna_strand>CTCTTAGCTTGGGAGACAAAATAACACTCAA-CAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAAAGAGAGTAGTGCTGCTTTATCTCTGTGTTGTAAGTTAACTGAATTTGGTACAAGTCACTCTTTGCTTGTTACTTTCTGTTAACTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550240" ref_strand="+" ref_description="SGN-E550240 [TUS-5-N18](-)">
      <seq>aaatatattctctctcatatttatcttttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatcttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtatttataggattttttagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="65670" stop="64489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65371" g_stop="64773" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E550240" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65371" e_stop="64773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGTTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTCCCTCCAACCTTCAAGTTGCAAATATTTTTTTGTCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAGTCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</genome_strand>
        <mrna_strand>AAATATATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAG-GATTTTTTAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18](-)">
      <seq>tttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatgttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="65645" stop="64492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65345" g_stop="64792" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65345" e_stop="64792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTCCCTCCAACCTTCAAGTTGCAAATATTTTTTTGTCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAGTCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</genome_strand>
        <mrna_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATGTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260634" ref_strand="-" ref_description="SGN-E260634 [cLEG-54-I7]">
      <seq>tagatgttgtgaataacattccagaggaagatgacgagtctactaaatctttgattcgacagacaagggtttattacctccttccttgttttttcctatttgataggagcaacatgctgttaaatcagatattggaagtgatgggatcatttatcaggggaaatgtgcctcattcgaaaggtgccttggcaaaggatcattcaagcagaattctttctgtagtctctgttctcttacttgtgcttggagatattaaaatgcagaaactttttttatcatgcaagacacagattagaaatatactagaaagcatgcacagactcgagttttttgaggatattacaatgacaattgaagaaagacataaaatccgaagtgcttatgacatactgactgcagccgttagcacattggaatacgactaacctggaatagtgtatttgagactcaatgtagttcgtggtaaagaaagaggatcgagaatgcaatcgtcatctaattatctttgatgacaccagttgagcgggtaagtaggacttttgttgagcctcatcgatcacagtaacaaaaacgtagagtttttgctcaacctcctcgatcagtgcgatggttacattcaattatgaccattgaattgaaattgtaatggcctatggttaaaacattcagttacaaccattgaaatgacattataattattgtttgaaaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="73709" stop="60195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73395" g_stop="73084" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="326" r_length="312" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72698" g_stop="72580" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="445" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72579" i_stop="72348" i_length="232">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72347" g_stop="72086" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="707" r_length="262" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72085" i_stop="71880" i_length="206">
            <donor d_prob="0.765" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71879" g_stop="71851" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="736" r_length="29" r_score="0.655"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E260634" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260634" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73395" e_stop="73084"/>
          <exon e_start="72698" e_stop="72580"/>
          <exon e_start="72347" e_stop="72086"/>
          <exon e_start="71879" e_stop="71851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATTCGACAGACAAGGGTTTATTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAGGTATGACATCAAACTCTGACCTCAACCTTCCGATTTCTCAAGTTACCTTGCATATAATACGATGTTCTAATTTGTCAAGAGTCGTGAAATTATAAATATTTGTTGGCATGCGTAGTAATTTCAAGTGCTGCTACCTTGTCCCTTCTGAACCGTATAATTTGATAAATGAGTGAGTTTTAGAAAGGAAGTCATTTATTATGAACTTTCAAGCTTTCAAGAGTAAGAAGTCTCTCTTTCAGGTCTAATATGAAGAAAGGATCATTTACTTTATGTATTTGTGCAATGAAACTTTCTAAGAACAAGTTCCATTAAGATTGTTGAACGAAACTGTGTATTGGGCTTCATTTCGACGTGCATTTACATGTAATCGATTTTGTGTTTGCAGTCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAGGTAAGTCTGCTTATCTGCTACGTAGCGTGTGTGCTTGTACAGTCTGTTTTGTTCTTGAGAAGGCCGTTAACAGCATAGATTACGCGAGTCTTAAGCATGTTTGGTGCAATCGTTATAATGCTTTTCCACGTCTGACTTATAATTTTGGGATGTTTGTGCTTTATGAAGTGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGACATGGGAAACCTTATATTTGACTCTGGTTGTAAGTTGGACTCTTATACTTACAACTTTGTCAATGAAACACAATATACTAAACTAGTTCCTCATCCTACACATGTGCATGTGGTACACTCATATTCATGTAGATCCACATCATTTTTAATGACAAATAAGAAATTAAATATAAACGGAGTCG</genome_strand>
        <mrna_strand>AACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATTCGACAGACAAGGGTTTATTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTTTTTTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG.................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATTTGAG........................................................................................................................................................................................................................................ACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTTTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTTTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTTTGAA..............................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260215" ref_strand="-" ref_description="SGN-E260215 [cLEG-53-K9]">
      <seq>tggtaaagaaagaggatcgagaatgcaatcgtcatctaattatttttgatgacaccagttgagcgggtaagtaggacttctgttgagcctcatcgatcacagtaacaaaaacgtagagtttttgctcaacctcctcgatcagtgcgatggttacattcaattatgaccattgaattgaaattgtaatggcctatggttaaaacattcagttacaaccattgaaatgacattataattattgtttgaaaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="72632" stop="60195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72332" g_stop="72086" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72085" i_stop="71880" i_length="206">
            <donor d_prob="0.765" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71879" g_stop="71851" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="276" r_length="29" r_score="0.655"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E260215" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260215" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72332" e_stop="72086"/>
          <exon e_start="71879" e_stop="71851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGACATGGGAAACCTTATATTTGACTCTGGTTGTAAGTTGGACTCTTATACTTACAACTTTGTCAATGAAACACAATATACTAAACTAGTTCCTCATCCTACACATGTGCATGTGGTACACTCATATTCATGTAGATCCACATCATTTTTAATGACAAATAAGAAATTAAATATAAACGGAGTCG</genome_strand>
        <mrna_strand>TGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATTTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTTTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTTTGAA..............................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724749" ref_strand="+" ref_description="SGN-E724749 [FC25AC04]">
      <seq>gggcgattggcggccaatcggccgaatttacctccttccttgttttttcctatttgataggagcaacatgctgttaaatcagatattggaagtgatgggatcatttatcaggggaaatgtgcctcattcgaaaggtgccttggcaaaggatcattcaagcagaattctttctgtagtctctgttctcttacttgtgcttggagatattaaaatgcagaaacttcttctatcatgcaagacaccgattagaaatatattagaaagcatgcacagactcgagtcttctgaggatattacaatgacaattgaagaaagacataaaatccgcagtgcttatgacatactgactgcagccgttagcacattggaatacgactaacctggaatagtgtatctgagtgatacaatttgctgtacaagatgaatgtttcaatcccaatgatcattcattgacattctgcagactcgatgtagttcgtggtaaagaaagaggatcgagaatgcaatcgtcatctattatctttgatgacaccagttgagcgggtaagtaggacttttgttgagcctcatcgatcacagtaacaaaaacgtagagtttctgctcaacctcctcgatcagtgcgatggttacattcaattatgaccattgaattgaaattgtaatggcctatggttaaaacattcaattacaaccattgaaatcacattataattattgtctgaggtatatatattcttattgcatatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="73636" stop="55708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73336" g_stop="73084" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="280" r_length="253" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385">
            <donor d_prob="0.799" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72698" g_stop="72580" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="399" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72579" i_stop="72412" i_length="168">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.466" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72411" g_stop="72058" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="752" r_length="353" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72057" i_stop="71873" i_length="185">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71872" g_stop="71859" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="766" r_length="14" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E724749" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73336" e_stop="73084"/>
          <exon e_start="72698" e_stop="72580"/>
          <exon e_start="72411" e_stop="72058"/>
          <exon e_start="71872" e_stop="71859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAGGTATGACATCAAACTCTGACCTCAACCTTCCGATTTCTCAAGTTACCTTGCATATAATACGATGTTCTAATTTGTCAAGAGTCGTGAAATTATAAATATTTGTTGGCATGCGTAGTAATTTCAAGTGCTGCTACCTTGTCCCTTCTGAACCGTATAATTTGATAAATGAGTGAGTTTTAGAAAGGAAGTCATTTATTATGAACTTTCAAGCTTTCAAGAGTAAGAAGTCTCTCTTTCAGGTCTAATATGAAGAAAGGATCATTTACTTTATGTATTTGTGCAATGAAACTTTCTAAGAACAAGTTCCATTAAGATTGTTGAACGAAACTGTGTATTGGGCTTCATTTCGACGTGCATTTACATGTAATCGATTTTGTGTTTGCAGTCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAGGTAAGTCTGCTTATCTGCTACGTAGCGTGTGTGCTTGTACAGTCTGTTTTGTTCTTGAGAAGGCCGTTAACAGCATAGATTACGCGAGTCTTAAGCATGTTTGGTGCAATCGTTATAATGCTTTTCCACGTCTGACTTATAATTTTGGGATGTTTGTGCTTTATGAAGTGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGACATGGGAAACCTTATATTTGACTCTGGTTGTAAGTTGGACTCTTATACTTACAACTTTGTCAATGAAACACAATATACTAAACTAGTTCCTCATCCTACACATGTGCATGTGGTACACTCATATTCATGTAGATCCACATCATTTTTAATGACAAATAAGAAATTAAATATAAA</genome_strand>
        <mrna_strand>TTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACCGATTAGAAATATATTAGAAAGCATGCACAGACTCGAG.................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGCAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAG........................................................................................................................................................................TGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCGATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCT-ATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTTTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAATTACAACCATTGAAATCACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAAA.........................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543042" ref_strand="+" ref_description="SGN-E543042 [TUS-64-K12](-)">
      <seq>tgtttttcctattgataggagcaacatgctgttaaatcagatattggaagtgatgggatcatttatcaggggaaatgtgcctcattcgaaaggtgctttggcaaaggatcattcaagcagaattctttctgtagtctctgttctcttacttgtgcttggagatattaaaatgcagaaacttcttctatcatgcaagacacagattagaaatatactagaaagcatgcacagactcgagtcttctgaggatattacaatgacaattgaagaaagacataaaatccgaagtgcttatgacatactgactgcagccgttagcacattggaatacgactaacctggaatagtgtatctgagtgatacaatttgctgtacaagatgaatgtttcaatcccaatgatcattcattgacattctgcagactcaatgtagttcgtggtaaagaaagaggatcgagaatgcaatcgtcatctaattatctttgatgacaccagttgagcgggtaagtaggacttctgttgagcctcatcgatcacagtaacaaaaacgtagagtttctgctcaacctcctcgatcagtgcgatggttacattcaattatgaccattgaattgaaattgtaatggcctatggttaaaacattcagttacaaccattgaaatgacattataattattgtctgaggtatatatattcttattgcatatttaatgtatctttatatgaatttagaatgacatgggaaaccttatatttgactctggttgtaagttggactcttatacttacaactttgtcaatgaaacacaatatactaaactaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="73623" stop="71648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73323" g_stop="73084" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72698" g_stop="72580" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="357" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72579" i_stop="72412" i_length="168">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.466" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72411" g_stop="71948" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="821" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="835"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E543042" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73323" e_stop="73084"/>
          <exon e_start="72698" e_stop="72580"/>
          <exon e_start="72411" e_stop="71948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAGGTATGACATCAAACTCTGACCTCAACCTTCCGATTTCTCAAGTTACCTTGCATATAATACGATGTTCTAATTTGTCAAGAGTCGTGAAATTATAAATATTTGTTGGCATGCGTAGTAATTTCAAGTGCTGCTACCTTGTCCCTTCTGAACCGTATAATTTGATAAATGAGTGAGTTTTAGAAAGGAAGTCATTTATTATGAACTTTCAAGCTTTCAAGAGTAAGAAGTCTCTCTTTCAGGTCTAATATGAAGAAAGGATCATTTACTTTATGTATTTGTGCAATGAAACTTTCTAAGAACAAGTTCCATTAAGATTGTTGAACGAAACTGTGTATTGGGCTTCATTTCGACGTGCATTTACATGTAATCGATTTTGTGTTTGCAGTCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAGGTAAGTCTGCTTATCTGCTACGTAGCGTGTGTGCTTGTACAGTCTGTTTTGTTCTTGAGAAGGCCGTTAACAGCATAGATTACGCGAGTCTTAAGCATGTTTGGTGCAATCGTTATAATGCTTTTCCACGTCTGACTTATAATTTTGGGATGTTTGTGCTTTATGAAGTGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGACATGGGAAACCTTATATTTGACTCTGGTTGTAAGTTGGACTCTTATACTTACAACTTTGTCAATGAAACACAATATACTAAACTA</genome_strand>
        <mrna_strand>TGTT-TTTCCTA-TTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCTTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG.................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAG........................................................................................................................................................................TGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGACATGGGAAACCTTATATTTGACTCTGGTTGTAAGTTGGACTCTTATACTTACAACTTTGTCAATGAAACACAATATACTAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542789" ref_strand="+" ref_description="SGN-E542789 [TUS-64-E9](-)">
      <seq>atcattcaagcagaattctttctgtagtctctgttctcttacttgtgctgggagatattaaaatgcagaaacttcttctatcatgcaagacacagattagaaatatactagaaagcatgcacagactcgagtcttctgaggatattacaatgacaattgaagaaagacataaaatccgaagtgcttatgacatactgactgcagccgttagcacattggaatacgactaacctggaatagtgtatctgagtgatacaatttgctgtacaagatgaatgtttcaatcccaatgatcattcattgacattctgcagactcaatgtagttcgtggtaaagaaagaggatcgagaatgcaatcgtcatctaattatctttgatgacaccagttgagcgggtaagtaggacttctgttgagcctcatcgatcacagtaacaaaaacgtagagtttctgctcaacctcctcgatcagtgcgatggttacattcaattatgaccattgaattgaaattgtaatggcctatggttaaaacattcagttacaaccattgaaatgacattataattattgtctgaggtatatatattcttattgcatatttaatgtatctttatatgaatttagaatgacatgggaaaccttatatttgactctggttgtaagttggactcttatacttacaactttgtcaatgaaacaccaatatactaaactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="73514" stop="71648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73214" g_stop="73084" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72698" g_stop="72580" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="250" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72579" i_stop="72412" i_length="168">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.466" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72411" g_stop="71948" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="715" r_length="465" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="716" polyA_stop="729"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E542789" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73214" e_stop="73084"/>
          <exon e_start="72698" e_stop="72580"/>
          <exon e_start="72411" e_stop="71948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAGGTATGACATCAAACTCTGACCTCAACCTTCCGATTTCTCAAGTTACCTTGCATATAATACGATGTTCTAATTTGTCAAGAGTCGTGAAATTATAAATATTTGTTGGCATGCGTAGTAATTTCAAGTGCTGCTACCTTGTCCCTTCTGAACCGTATAATTTGATAAATGAGTGAGTTTTAGAAAGGAAGTCATTTATTATGAACTTTCAAGCTTTCAAGAGTAAGAAGTCTCTCTTTCAGGTCTAATATGAAGAAAGGATCATTTACTTTATGTATTTGTGCAATGAAACTTTCTAAGAACAAGTTCCATTAAGATTGTTGAACGAAACTGTGTATTGGGCTTCATTTCGACGTGCATTTACATGTAATCGATTTTGTGTTTGCAGTCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAGGTAAGTCTGCTTATCTGCTACGTAGCGTGTGTGCTTGTACAGTCTGTTTTGTTCTTGAGAAGGCCGTTAACAGCATAGATTACGCGAGTCTTAAGCATGTTTGGTGCAATCGTTATAATGCTTTTCCACGTCTGACTTATAATTTTGGGATGTTTGTGCTTTATGAAGTGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGACATGGGAAACCTTATATTTGACTCTGGTTGTAAGTTGGACTCTTATACTTACAACTTTGTCAATGAAACA-CAATATACTAAACTA</genome_strand>
        <mrna_strand>ATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTGGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG.................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAG........................................................................................................................................................................TGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGACATGGGAAACCTTATATTTGACTCTGGTTGTAAGTTGGACTCTTATACTTACAACTTTGTCAATGAAACACCAATATACTAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352035" ref_strand="+" ref_description="SGN-E352035 [cTOS-13-O18]">
      <seq>aacttcttctatcatgcaagacacagattagaaatatactagaaagcatgcacagactcgagtcttctgaggatattacaatgacaattgaagaaagacataaaatccgaagtgcttatgacatactgactgcagccgttagcacattggaatacgactaacctggaatagtgtatctgagactcaatgtagttcgtggtaaagaaagaggatcgagaatgcaatcgtcatctaattatctttgatgacaccagttgagcgggtaagtaggacttctgttgagcctcatcgatcacagtaacaaaaacgtagagtttctgctcaacctcctcgatcagtgcgatggttacattcaattatgaccattgaattgaaattgtaatggcctatggttaaaacattcagttacaaccattgaaatgacattataattattgtctgaggtatatatattcttattgcatatttaatgtatctttatatgaatttagaatgaaannnaanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="73445" stop="71731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73145" g_stop="73084" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72698" g_stop="72580" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="181" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72579" i_stop="72348" i_length="232">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72347" g_stop="72032" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="497" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="520"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E352035" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73145" e_stop="73084"/>
          <exon e_start="72698" e_stop="72580"/>
          <exon e_start="72347" e_stop="72032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAGGTATGACATCAAACTCTGACCTCAACCTTCCGATTTCTCAAGTTACCTTGCATATAATACGATGTTCTAATTTGTCAAGAGTCGTGAAATTATAAATATTTGTTGGCATGCGTAGTAATTTCAAGTGCTGCTACCTTGTCCCTTCTGAACCGTATAATTTGATAAATGAGTGAGTTTTAGAAAGGAAGTCATTTATTATGAACTTTCAAGCTTTCAAGAGTAAGAAGTCTCTCTTTCAGGTCTAATATGAAGAAAGGATCATTTACTTTATGTATTTGTGCAATGAAACTTTCTAAGAACAAGTTCCATTAAGATTGTTGAACGAAACTGTGTATTGGGCTTCATTTCGACGTGCATTTACATGTAATCGATTTTGTGTTTGCAGTCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAGGTAAGTCTGCTTATCTGCTACGTAGCGTGTGTGCTTGTACAGTCTGTTTTGTTCTTGAGAAGGCCGTTAACAGCATAGATTACGCGAGTCTTAAGCATGTTTGGTGCAATCGTTATAATGCTTTTCCACGTCTGACTTATAATTTTGGGATGTTTGTGCTTTATGAAGTGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGAC</genome_strand>
        <mrna_strand>AACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG.................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAG........................................................................................................................................................................................................................................ACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278207" ref_strand="+" ref_description="SGN-E278207 [cLER-9-A19]">
      <seq>tcaaattgtggaaccttcaaagcagttgttagggctgtttgttcttggttgtcgcagataggagatgatgtgctcgttttgcagatgctggagaaaattgttcttgatgagatatctcagaaacaactagtagacaacatttatggttttataagattgcttatcacactagactcaaaacctactcgactttctgaagaaactatcaatagactaagcgaggtccttccggagtacttcttagatgttgtgaataacattccagaggaagatgacgagtctactaaatctttgattcgacagacaagggtttattacctccttccttgttttttcctatttgataggagcaacatgctgttaaatcagatattggaagtgatgggatcatttatcaggggaaatgtgcctcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="74380" stop="72935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74080" g_stop="73967" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73966" i_stop="73862" i_length="105">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73861" g_stop="73721" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="255" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73720" i_stop="73396" i_length="325">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73395" g_stop="73235" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="416" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E278207" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74080" e_stop="73967"/>
          <exon e_start="73861" e_stop="73721"/>
          <exon e_start="73395" e_stop="73235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATAGTGAGTTAAACAGTAGATGCTGTATTGATAAGGTGTTTTTGTTTTGGGATAGATGATCATGATATTTCTCCAGCCACTTAACTCTTGATTTTATATGTTCTGCAGTCTCAGAAACAACCAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCCGGAGTACTTCTTAGATGTTGTGAATGTAAGTATTTTTCAAGTCTCCTTTGTTTATGACCGGTTAATTTCCTGTAACCTTGTGTACAATTTCTTTATAGATATGTCCAAAGTTTTGTTGATTACTTGTTGCTTAATCTTTCATGATGTTAAGATTATGTCTCTGCCACTAACTTGTATTTAGAAGAACGCCATCTTGTAACTCGAATATATAGAAGCCCATAAAGCATAAAAAACGAAAGCCCATCTTCTCAGAGCTTTGATTTGCATGGTTGGTGCAATTTTGTTCTGAATGTCATTTGCTTGTAATACCTTCAACTCATGTCTTTTCAATTGTTTTAACTTTGATGTAGAACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATTCGACAGACAAGGGTTTATTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTC</genome_strand>
        <mrna_strand>TCAAATTGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATA.........................................................................................................TCTCAGAAACAACTAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCCGGAGTACTTCTTAGATGTTGTGAAT.....................................................................................................................................................................................................................................................................................................................................AACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATTCGACAGACAAGGGTTTATTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542790" ref_strand="+" ref_description="SGN-E542790 [TUS-64-E9]">
      <seq>aggtgataaacacccattacattcaaaggctgtgttacgtcttcagcttcgtgttggacaaactgctaatttaagcatgacaccggcaaaagaatatgaaaatatgcagtactttataagagctttttactgcacctactccaatgaaactgtaagctatggtccattcatgaggcttcctagagatattcaggagctctctgtatgctgtctgtattacttccctttcttggacaaggtgatactcgagtctttagcctcatgctgcatatgtcacgagttggaaccatttatccttttccgagtcatggaagttctacactcagcctacaaggctggccatatccagattgcagattacattagcttcttcatcacattgctttcacgctttcaagtttatcctgagaaaattgatcctatggagaagcacgaagggaagtcaaatcgtggaaccttcaaagcagttgttagggctgtttgttcttggttgtcgcagataggagatggtgtgctcgttttgcagatgctggagaaaattgttcttgatgagatatctcagaaacaaccagtagacaacatttatggttttataagattgcttatcacactagactcaaaacctactcgactttctgaagaaactatcaatagactaagcgaggtccttccggagtacttcttagatgttgtgaaatacattccagaggaagatgacgagtctactaaatctttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="78874" stop="73054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78574" g_stop="78547" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78546" i_stop="78413" i_length="134">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78412" g_stop="78295" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="146" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78189" g_stop="78064" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="272" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78063" i_stop="75189" i_length="2875">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75188" g_stop="75054" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="407" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75053" i_stop="74116" i_length="938">
            <donor d_prob="0.532" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74115" g_stop="73967" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="556" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73966" i_stop="73862" i_length="105">
            <donor d_prob="0.086" d_score="0.98"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73861" g_stop="73721" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="697" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73720" i_stop="73396" i_length="325">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73395" g_stop="73354" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="739" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E542790" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78574" e_stop="78547"/>
          <exon e_start="78412" e_stop="78295"/>
          <exon e_start="78189" e_stop="78064"/>
          <exon e_start="75188" e_stop="75054"/>
          <exon e_start="74115" e_stop="73967"/>
          <exon e_start="73861" e_stop="73721"/>
          <exon e_start="73395" e_stop="73354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGATAAACACCCATTACATTCAAAGGTACCTACTTAGCTACCACCAGTACTGGTCTTTCTTAGGCTGAAATTTATGCTATATGCATATCCATTTGTTCTTCAAGTTTTCACATTGAGCTGAAATTCATCTTGTGCTTCTACAATAATTGCCTCTTGTAGGCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATGGTACTTAAGATTCATCTTCATTTAGTTCCAACTTTTATTTGTTTCATAATTCTGAATCTCACATTATTAATTCCTCACATGTTTTCCCTTTTTCTTGCACTGTAGAAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATATGTAAGTACAACTCCTTGCCATGAATGATTTTTATCTCCTTAACTAGATGGCGATATCAATGTCCTTTACAAAACTAATTGGTGTTCAAATTGTTAAATTGCTTGATGTGTGTGATCATTTGATCTAAAAGTTTGAGTTGTTAGGGAGAGCACACTTCCATTGCATTTTATAACTGTCTAATTGTATGCCCTTGCAGCTTCTTTCTCACTGTCAAATAGTCCTAGATAGATATACTTCCTGCCCCATACATGCTACCCATCATTTGTGCAGAGTGACCCCCCGACACTTGGGTCCTCTCCAAAAATTCTTCTTTGGTGAAATTCTACTTCATCACTGATGTTAAAATCCTTCAACAGCATATAACTAAACAATTTCGAGAACTCTGAAACTTGGGTCCTCTCCTACTCTTCCTCTGTTGTTATCTCTGCTACCGAGACATAGCAATTCTCTGCTCATTTGAAGCATCGTAGTTGGCTAAAAGATCCAACCACCACTGCTGCGGCAACTCAGCCTCTGCAATTACCAATAGAAATAACTCACCAAATCTTCATATTCCTAAACTCTTCGTAGTCATCCCCTTCTCCATGTGTTTTCAGTATATCAAATGCATAACCATTGCAGCGAATATCTGGACATGATACTAATCATCACTGACAGTACTAGATATTTCAATGTAAACAATGGAGGAATTGGAGGTCTAGAATTCTTCATTTAGGTGACAGTTCGTTGAGCTTTTTCCGGTGCTATTTGCCCTTGTATGGAAACGGATTCAACTGGAATATCTCGAAAACTAAGATTAAGATCAAACATCTCAAATTCCCACTACAATATGTCCAAAGTTGCACTAAAAATTTTAAATAATCAAATGGGAATTCAAATTCGATAATCAAAAAATCAAGAATGCAAGAGAACAATCAAATTATGGAGATTGAGTTAAGTATCAGGGATATAAGAAAATGGTAAGTGGGTTGGGGGTGGGAATAAAAAGAAATGTGGTAATATATACACTACACAAATACATTCCTTGTGTATGACACTTTCAAATGTATTATATATAGAGAAGGGACAATGATTAAATGGTAACTACATTGGTTTTGGGCAAAAAAGGATGGGTGGAAGGGGGAGACAGTTACAAACGTTAGAGCAAACAAAGAAAACATTGGGCCGATACTACCTGCCGGTAGGAGAATCTATTGGATCTCTACCAAGACCGTAGAGGCTTTGATACTATCTTGAACTGTTTGCGTGTCTGATCATTTCATCTAAAAGTTTTAATTGATTAGAGAGATCCCATTTATATACTTTATTATGTCTTTATACAAATGTTGCATGATTTGCCTAGTTATTCAGGGATTGGCGGGAATATTGTAATTTAAGAGGTCACCATCTTATATAAAAGTTTGTTGGAGGAATACACTTTAATTTATTCTTTTATATATTCAACATGCTCCCTTGACTGCGAACTTGGTTTTTTTATCGGCCAAGCACGTGGACTGAGGACCATCTTAAGAGGCCGCTTTGAGGTAATATTGAAGTGTGTGACTATCTCATCCAAAAGTTCATGTTGTTAAGAGAACATACTTCTATTTTTTAAAATATATCTTCAATAAGTGTTATAGCTGTTTTGCGAGTGAATCCCATTGATTAAACAAGAAAATAGAAAAGAGGCTAGGAAAATTGAAGGCGCAAAGCTAGGAGTAGCAAAATGGAGAGAAATTGATAGAGCAGAAGAAGGGCTGAATTACTGGTTGAGTAAAAATGTTTGCATGATTCTACCTGAAATATCTTTGAAACTCATATAAAGTTAACCACATGACTTGGATTTTAAGGGTACTTGCCAAATGAGTTACTTGACACTCACATGTCCTCCAATTCCATGGGGGTAAGGTGGGCCTATAGGTCTGGTTTCAACAATGTCACTAACAACTTGAATAAAACCATCTCTAGCATCAGTAAGGTTTTTGCTCCTAGACCAGTTGGACTACCATGAATGCATGACCTATTCTTTTTGAGTCACAGAGTGCAAGTGTGTCATAACATCAATTTTCATCACATTCCTGGAATGCTCAGAGCATGTTGGATTGAAATCATCAGGTCGCGATTCTTTTATCGTGAATAATTCTTTACCGTTTTTTCCACCCCTCTCAAATGGATTCTCAAGCAATTCCTTATTACTCTAACTAATTCGTCACAAATTAAAATATTTCCAATAAATTGTTGTCCCCAGTCAATGTTCTCATCACAAGTGTTGATAATATTATATTATATCATCATAACTATCATCTTCTTCCTCCAGCATATGCCCACTAATTTGTAGCTTTTATGGAGCATGTTTACTGCATTGAACCGGAGGATTATTGTCTCTCAGGTTTTCATTGATGTTCTCTTAAATATTATATTTGATGTTCATGGATCATGAGTGTCACCAATACGTCAGTGTTCCCTAAAAGTTCTTTTTTTGGGTGTGTATTTGTGTTTTTTTTTGTGTTTACAGTAAAATTGGACGAGATTTTGATAGAAGTTTGGCGTATGTTCTTTCAGGCCATGACGGTTCCAGTGAATGACCTTATTGTTTGAATTGGTTCTAAAATATTTTACATAAACGTTCTTCTCTTGTCTCAGGAGAAATGATATGACTTTATAGGTTCAGACATATTTTAAATAAATGTTCCTTCTCTTGTATCGGGAAGAAATGTTATATACTTAAATAAAGGGAAATTCTCTTTGGTTAGCATCTACATGTATTGTTACAAAAAATGATTCAGTCAAAATATATTAGAAGAAGCACAAATATATATCTTTGGTGCTTCTATCTTGTATGAGTATGAGCAGTCATTCTCACGATATTATTTCATCTATGGTTGTTTTAATGTAGGTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTGGTACCTTCTGAATCAGGCTTTTTGGTGTTCCTCAGTCCTTTTAAGAATTTGAAAACTATAGAAGTGTTATCAAAGGCGCGCTTTAAGCGCGCTTAAGCCATGAAGCGAGGCTCAAAACGTGTTGAGAGCTTCGCCTCGCTTTATGTGAGCTTCAGGGTCGTCATCAAGGTTTTAAGGCAAACGTTTCCTTGCCAATGAGCTTCGTATGAAGAAGTGACACTAAATAATTGATATTTCACTTTCTCATAATTTTTTCAATTTCTTTGGTCATATATTTGGCATTCATGTTTATAATTAATAGTCTTGGACTAAACATATATATTTGTATTCTTTTCTCCCTTTGTGCCTTTTTCATTAAAGTCCACACTTTATTTGCGCTCTACGCTCAAAGCCCTCATGGACCTTAGAGTTTTTTTGTGCTTTTCGCCTTTGATAACACTATACAGAACCCAAATGTGTAACCTAACAATCAACAAATTGGCATTTAATAGAGACCAGGATTTAAATCCCAGAGGTGATTTTTCTCGTTGGTTGACAAAGTTACATGTACTTGTGTTGGTGCTAGGTAGCAAGTATCCAGCGAAATAGTCAAGGTGTGCACAAGTTGACCCAAATGTTATGGTCAGTGTGTTGCCTCAGAAATATTGGACTAAAAGACATAATTATTCCTTAGTGTATTGATTAGCCATTAAACAATCAATAAAGAAGAGAAACCGATAGAAAGATTACCACAAAAAAATTTGGCAGGTATTGAGATTTGAGTCTGACTAAGAAATAAGAGTCCTTTGCAAGGAACTCGTCCTTAAATATTCTGCATTTATTTTTTAAATCCTTTTTTGCTGTAAAAATACTCTCTTTCAGACACCTTTTTAGTTGTTCTTTTGCTGTGATCTATTGTTTATAAATATTAAATCTGGAACCTGGATGCTTTTCTGCAGAGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATAGTGAGTTAAACAGTAGATGCTGTATTGATAAGGTGTTTTTGTTTTGGGATAGATGATCATGATATTTCTCCAGCCACTTAACTCTTGATTTTATATGTTCTGCAGTCTCAGAAACAACCAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCCGGAGTACTTCTTAGATGTTGTGAATGTAAGTATTTTTCAAGTCTCCTTTGTTTATGACCGGTTAATTTCCTGTAACCTTGTGTACAATTTCTTTATAGATATGTCCAAAGTTTTGTTGATTACTTGTTGCTTAATCTTTCATGATGTTAAGATTATGTCTCTGCCACTAACTTGTATTTAGAAGAACGCCATCTTGTAACTCGAATATATAGAAGCCCATAAAGCATAAAAAACGAAAGCCCATCTTCTCAGAGCTTTGATTTGCATGGTTGGTGCAATTTTGTTCTGAATGTCATTTGCTTGTAATACCTTCAACTCATGTCTTTTCAATTGTTTTAACTTTGATGTAGAACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATT</genome_strand>
        <mrna_strand>AGGTGATAAACACCCATTACATTCAAAG......................................................................................................................................GCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATG.........................................................................................................AAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGGTGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATA.........................................................................................................TCTCAGAAACAACCAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCCGGAGTACTTCTTAGATGTTGTGAAA.....................................................................................................................................................................................................................................................................................................................................TACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548813" ref_strand="+" ref_description="SGN-E548813 [TUS-64-K12]">
      <seq>aggtgataaacacccattacattcaaaggctgtgttacgtcttcagcttcgtgttggacaaactgctaatttaagcatgacaccggcaaaagaatatgaaaatatgcagtactttataagagctttttactgcacctactccaatgaaactgtaagctatggtccattcatgaggcttcctagagatattcaggagctctctgtatgctgtctgtattacttccctttcttggacaaggtgatactcgagtctttagcctcatgctgcatatgtcacgagttggaaccatttatccttttccgagtcatggaagttctacactcagcctacaaggctggccatatccagattgcagattacattagcttcttcatcacattgctttcacgctttcaagtttatcctgagaaaattgatcctatggagaagcacgaagggaagtcaaatcgtggaaccttcaaagcagttgttagggctgtttgttcttggttgtcgcagataggagatggtgtgctcgttttgcagatgctggagaaaattgttcttgatgagatatctcagaaacaaccagtagacaacatttatggttttataagattgcttatcacactagactcaaaacctactcgactttctgaagaaactatcaatagactaagcgaggtccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="78874" stop="73446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78574" g_stop="78547" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78546" i_stop="78413" i_length="134">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78412" g_stop="78295" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="146" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78189" g_stop="78064" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="272" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78063" i_stop="75189" i_length="2875">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75188" g_stop="75054" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="407" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75053" i_stop="74116" i_length="938">
            <donor d_prob="0.532" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74115" g_stop="73967" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="556" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73966" i_stop="73862" i_length="105">
            <donor d_prob="0.086" d_score="0.98"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73861" g_stop="73746" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="672" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E548813" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78574" e_stop="78547"/>
          <exon e_start="78412" e_stop="78295"/>
          <exon e_start="78189" e_stop="78064"/>
          <exon e_start="75188" e_stop="75054"/>
          <exon e_start="74115" e_stop="73967"/>
          <exon e_start="73861" e_stop="73746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGATAAACACCCATTACATTCAAAGGTACCTACTTAGCTACCACCAGTACTGGTCTTTCTTAGGCTGAAATTTATGCTATATGCATATCCATTTGTTCTTCAAGTTTTCACATTGAGCTGAAATTCATCTTGTGCTTCTACAATAATTGCCTCTTGTAGGCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATGGTACTTAAGATTCATCTTCATTTAGTTCCAACTTTTATTTGTTTCATAATTCTGAATCTCACATTATTAATTCCTCACATGTTTTCCCTTTTTCTTGCACTGTAGAAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATATGTAAGTACAACTCCTTGCCATGAATGATTTTTATCTCCTTAACTAGATGGCGATATCAATGTCCTTTACAAAACTAATTGGTGTTCAAATTGTTAAATTGCTTGATGTGTGTGATCATTTGATCTAAAAGTTTGAGTTGTTAGGGAGAGCACACTTCCATTGCATTTTATAACTGTCTAATTGTATGCCCTTGCAGCTTCTTTCTCACTGTCAAATAGTCCTAGATAGATATACTTCCTGCCCCATACATGCTACCCATCATTTGTGCAGAGTGACCCCCCGACACTTGGGTCCTCTCCAAAAATTCTTCTTTGGTGAAATTCTACTTCATCACTGATGTTAAAATCCTTCAACAGCATATAACTAAACAATTTCGAGAACTCTGAAACTTGGGTCCTCTCCTACTCTTCCTCTGTTGTTATCTCTGCTACCGAGACATAGCAATTCTCTGCTCATTTGAAGCATCGTAGTTGGCTAAAAGATCCAACCACCACTGCTGCGGCAACTCAGCCTCTGCAATTACCAATAGAAATAACTCACCAAATCTTCATATTCCTAAACTCTTCGTAGTCATCCCCTTCTCCATGTGTTTTCAGTATATCAAATGCATAACCATTGCAGCGAATATCTGGACATGATACTAATCATCACTGACAGTACTAGATATTTCAATGTAAACAATGGAGGAATTGGAGGTCTAGAATTCTTCATTTAGGTGACAGTTCGTTGAGCTTTTTCCGGTGCTATTTGCCCTTGTATGGAAACGGATTCAACTGGAATATCTCGAAAACTAAGATTAAGATCAAACATCTCAAATTCCCACTACAATATGTCCAAAGTTGCACTAAAAATTTTAAATAATCAAATGGGAATTCAAATTCGATAATCAAAAAATCAAGAATGCAAGAGAACAATCAAATTATGGAGATTGAGTTAAGTATCAGGGATATAAGAAAATGGTAAGTGGGTTGGGGGTGGGAATAAAAAGAAATGTGGTAATATATACACTACACAAATACATTCCTTGTGTATGACACTTTCAAATGTATTATATATAGAGAAGGGACAATGATTAAATGGTAACTACATTGGTTTTGGGCAAAAAAGGATGGGTGGAAGGGGGAGACAGTTACAAACGTTAGAGCAAACAAAGAAAACATTGGGCCGATACTACCTGCCGGTAGGAGAATCTATTGGATCTCTACCAAGACCGTAGAGGCTTTGATACTATCTTGAACTGTTTGCGTGTCTGATCATTTCATCTAAAAGTTTTAATTGATTAGAGAGATCCCATTTATATACTTTATTATGTCTTTATACAAATGTTGCATGATTTGCCTAGTTATTCAGGGATTGGCGGGAATATTGTAATTTAAGAGGTCACCATCTTATATAAAAGTTTGTTGGAGGAATACACTTTAATTTATTCTTTTATATATTCAACATGCTCCCTTGACTGCGAACTTGGTTTTTTTATCGGCCAAGCACGTGGACTGAGGACCATCTTAAGAGGCCGCTTTGAGGTAATATTGAAGTGTGTGACTATCTCATCCAAAAGTTCATGTTGTTAAGAGAACATACTTCTATTTTTTAAAATATATCTTCAATAAGTGTTATAGCTGTTTTGCGAGTGAATCCCATTGATTAAACAAGAAAATAGAAAAGAGGCTAGGAAAATTGAAGGCGCAAAGCTAGGAGTAGCAAAATGGAGAGAAATTGATAGAGCAGAAGAAGGGCTGAATTACTGGTTGAGTAAAAATGTTTGCATGATTCTACCTGAAATATCTTTGAAACTCATATAAAGTTAACCACATGACTTGGATTTTAAGGGTACTTGCCAAATGAGTTACTTGACACTCACATGTCCTCCAATTCCATGGGGGTAAGGTGGGCCTATAGGTCTGGTTTCAACAATGTCACTAACAACTTGAATAAAACCATCTCTAGCATCAGTAAGGTTTTTGCTCCTAGACCAGTTGGACTACCATGAATGCATGACCTATTCTTTTTGAGTCACAGAGTGCAAGTGTGTCATAACATCAATTTTCATCACATTCCTGGAATGCTCAGAGCATGTTGGATTGAAATCATCAGGTCGCGATTCTTTTATCGTGAATAATTCTTTACCGTTTTTTCCACCCCTCTCAAATGGATTCTCAAGCAATTCCTTATTACTCTAACTAATTCGTCACAAATTAAAATATTTCCAATAAATTGTTGTCCCCAGTCAATGTTCTCATCACAAGTGTTGATAATATTATATTATATCATCATAACTATCATCTTCTTCCTCCAGCATATGCCCACTAATTTGTAGCTTTTATGGAGCATGTTTACTGCATTGAACCGGAGGATTATTGTCTCTCAGGTTTTCATTGATGTTCTCTTAAATATTATATTTGATGTTCATGGATCATGAGTGTCACCAATACGTCAGTGTTCCCTAAAAGTTCTTTTTTTGGGTGTGTATTTGTGTTTTTTTTTGTGTTTACAGTAAAATTGGACGAGATTTTGATAGAAGTTTGGCGTATGTTCTTTCAGGCCATGACGGTTCCAGTGAATGACCTTATTGTTTGAATTGGTTCTAAAATATTTTACATAAACGTTCTTCTCTTGTCTCAGGAGAAATGATATGACTTTATAGGTTCAGACATATTTTAAATAAATGTTCCTTCTCTTGTATCGGGAAGAAATGTTATATACTTAAATAAAGGGAAATTCTCTTTGGTTAGCATCTACATGTATTGTTACAAAAAATGATTCAGTCAAAATATATTAGAAGAAGCACAAATATATATCTTTGGTGCTTCTATCTTGTATGAGTATGAGCAGTCATTCTCACGATATTATTTCATCTATGGTTGTTTTAATGTAGGTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTGGTACCTTCTGAATCAGGCTTTTTGGTGTTCCTCAGTCCTTTTAAGAATTTGAAAACTATAGAAGTGTTATCAAAGGCGCGCTTTAAGCGCGCTTAAGCCATGAAGCGAGGCTCAAAACGTGTTGAGAGCTTCGCCTCGCTTTATGTGAGCTTCAGGGTCGTCATCAAGGTTTTAAGGCAAACGTTTCCTTGCCAATGAGCTTCGTATGAAGAAGTGACACTAAATAATTGATATTTCACTTTCTCATAATTTTTTCAATTTCTTTGGTCATATATTTGGCATTCATGTTTATAATTAATAGTCTTGGACTAAACATATATATTTGTATTCTTTTCTCCCTTTGTGCCTTTTTCATTAAAGTCCACACTTTATTTGCGCTCTACGCTCAAAGCCCTCATGGACCTTAGAGTTTTTTTGTGCTTTTCGCCTTTGATAACACTATACAGAACCCAAATGTGTAACCTAACAATCAACAAATTGGCATTTAATAGAGACCAGGATTTAAATCCCAGAGGTGATTTTTCTCGTTGGTTGACAAAGTTACATGTACTTGTGTTGGTGCTAGGTAGCAAGTATCCAGCGAAATAGTCAAGGTGTGCACAAGTTGACCCAAATGTTATGGTCAGTGTGTTGCCTCAGAAATATTGGACTAAAAGACATAATTATTCCTTAGTGTATTGATTAGCCATTAAACAATCAATAAAGAAGAGAAACCGATAGAAAGATTACCACAAAAAAATTTGGCAGGTATTGAGATTTGAGTCTGACTAAGAAATAAGAGTCCTTTGCAAGGAACTCGTCCTTAAATATTCTGCATTTATTTTTTAAATCCTTTTTTGCTGTAAAAATACTCTCTTTCAGACACCTTTTTAGTTGTTCTTTTGCTGTGATCTATTGTTTATAAATATTAAATCTGGAACCTGGATGCTTTTCTGCAGAGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATAGTGAGTTAAACAGTAGATGCTGTATTGATAAGGTGTTTTTGTTTTGGGATAGATGATCATGATATTTCTCCAGCCACTTAACTCTTGATTTTATATGTTCTGCAGTCTCAGAAACAACCAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCC</genome_strand>
        <mrna_strand>AGGTGATAAACACCCATTACATTCAAAG......................................................................................................................................GCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATG.........................................................................................................AAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGGTGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATA.........................................................................................................TCTCAGAAACAACCAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301198" ref_strand="+" ref_description="SGN-E301198 [cLEW-22-B18]">
      <seq>aaatatgcagtactttataagagctttttactgcacctgctccaatgaaactgtaagctatggtccattcatgaggcttcctagagatattcaggagctctctgtatgctgtctgtattacttccctttcttggacaaggtgatactcgagtctttagcctcatgctgcatatgtcacgagttggaaccatttatccttttccgagtcatggaagttctacactcagcctacaaggctggccatatccagattgcagattacattagcttcttcatcacattgctttcacgctttcaagtttatcctgagaaaattgatcctatggagaagcacgaagggaagtcaaatcgtggaaccttcaaagcagttgttagggctgtttgttcttggttgtcgcagataggagatgatgtgctcgttttgcagatgctggagaaaattgttcttgatgagatatctcagaaacaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="78641" stop="73667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78341" g_stop="78295" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78189" g_stop="78064" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="173" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78063" i_stop="75189" i_length="2875">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75188" g_stop="75054" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="308" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75053" i_stop="74116" i_length="938">
            <donor d_prob="0.532" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74115" g_stop="73967" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="457" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73966" i_stop="73862" i_length="105">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73861" g_stop="73847" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="472" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E301198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78341" e_stop="78295"/>
          <exon e_start="78189" e_stop="78064"/>
          <exon e_start="75188" e_stop="75054"/>
          <exon e_start="74115" e_stop="73967"/>
          <exon e_start="73861" e_stop="73847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATGGTACTTAAGATTCATCTTCATTTAGTTCCAACTTTTATTTGTTTCATAATTCTGAATCTCACATTATTAATTCCTCACATGTTTTCCCTTTTTCTTGCACTGTAGAAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATATGTAAGTACAACTCCTTGCCATGAATGATTTTTATCTCCTTAACTAGATGGCGATATCAATGTCCTTTACAAAACTAATTGGTGTTCAAATTGTTAAATTGCTTGATGTGTGTGATCATTTGATCTAAAAGTTTGAGTTGTTAGGGAGAGCACACTTCCATTGCATTTTATAACTGTCTAATTGTATGCCCTTGCAGCTTCTTTCTCACTGTCAAATAGTCCTAGATAGATATACTTCCTGCCCCATACATGCTACCCATCATTTGTGCAGAGTGACCCCCCGACACTTGGGTCCTCTCCAAAAATTCTTCTTTGGTGAAATTCTACTTCATCACTGATGTTAAAATCCTTCAACAGCATATAACTAAACAATTTCGAGAACTCTGAAACTTGGGTCCTCTCCTACTCTTCCTCTGTTGTTATCTCTGCTACCGAGACATAGCAATTCTCTGCTCATTTGAAGCATCGTAGTTGGCTAAAAGATCCAACCACCACTGCTGCGGCAACTCAGCCTCTGCAATTACCAATAGAAATAACTCACCAAATCTTCATATTCCTAAACTCTTCGTAGTCATCCCCTTCTCCATGTGTTTTCAGTATATCAAATGCATAACCATTGCAGCGAATATCTGGACATGATACTAATCATCACTGACAGTACTAGATATTTCAATGTAAACAATGGAGGAATTGGAGGTCTAGAATTCTTCATTTAGGTGACAGTTCGTTGAGCTTTTTCCGGTGCTATTTGCCCTTGTATGGAAACGGATTCAACTGGAATATCTCGAAAACTAAGATTAAGATCAAACATCTCAAATTCCCACTACAATATGTCCAAAGTTGCACTAAAAATTTTAAATAATCAAATGGGAATTCAAATTCGATAATCAAAAAATCAAGAATGCAAGAGAACAATCAAATTATGGAGATTGAGTTAAGTATCAGGGATATAAGAAAATGGTAAGTGGGTTGGGGGTGGGAATAAAAAGAAATGTGGTAATATATACACTACACAAATACATTCCTTGTGTATGACACTTTCAAATGTATTATATATAGAGAAGGGACAATGATTAAATGGTAACTACATTGGTTTTGGGCAAAAAAGGATGGGTGGAAGGGGGAGACAGTTACAAACGTTAGAGCAAACAAAGAAAACATTGGGCCGATACTACCTGCCGGTAGGAGAATCTATTGGATCTCTACCAAGACCGTAGAGGCTTTGATACTATCTTGAACTGTTTGCGTGTCTGATCATTTCATCTAAAAGTTTTAATTGATTAGAGAGATCCCATTTATATACTTTATTATGTCTTTATACAAATGTTGCATGATTTGCCTAGTTATTCAGGGATTGGCGGGAATATTGTAATTTAAGAGGTCACCATCTTATATAAAAGTTTGTTGGAGGAATACACTTTAATTTATTCTTTTATATATTCAACATGCTCCCTTGACTGCGAACTTGGTTTTTTTATCGGCCAAGCACGTGGACTGAGGACCATCTTAAGAGGCCGCTTTGAGGTAATATTGAAGTGTGTGACTATCTCATCCAAAAGTTCATGTTGTTAAGAGAACATACTTCTATTTTTTAAAATATATCTTCAATAAGTGTTATAGCTGTTTTGCGAGTGAATCCCATTGATTAAACAAGAAAATAGAAAAGAGGCTAGGAAAATTGAAGGCGCAAAGCTAGGAGTAGCAAAATGGAGAGAAATTGATAGAGCAGAAGAAGGGCTGAATTACTGGTTGAGTAAAAATGTTTGCATGATTCTACCTGAAATATCTTTGAAACTCATATAAAGTTAACCACATGACTTGGATTTTAAGGGTACTTGCCAAATGAGTTACTTGACACTCACATGTCCTCCAATTCCATGGGGGTAAGGTGGGCCTATAGGTCTGGTTTCAACAATGTCACTAACAACTTGAATAAAACCATCTCTAGCATCAGTAAGGTTTTTGCTCCTAGACCAGTTGGACTACCATGAATGCATGACCTATTCTTTTTGAGTCACAGAGTGCAAGTGTGTCATAACATCAATTTTCATCACATTCCTGGAATGCTCAGAGCATGTTGGATTGAAATCATCAGGTCGCGATTCTTTTATCGTGAATAATTCTTTACCGTTTTTTCCACCCCTCTCAAATGGATTCTCAAGCAATTCCTTATTACTCTAACTAATTCGTCACAAATTAAAATATTTCCAATAAATTGTTGTCCCCAGTCAATGTTCTCATCACAAGTGTTGATAATATTATATTATATCATCATAACTATCATCTTCTTCCTCCAGCATATGCCCACTAATTTGTAGCTTTTATGGAGCATGTTTACTGCATTGAACCGGAGGATTATTGTCTCTCAGGTTTTCATTGATGTTCTCTTAAATATTATATTTGATGTTCATGGATCATGAGTGTCACCAATACGTCAGTGTTCCCTAAAAGTTCTTTTTTTGGGTGTGTATTTGTGTTTTTTTTTGTGTTTACAGTAAAATTGGACGAGATTTTGATAGAAGTTTGGCGTATGTTCTTTCAGGCCATGACGGTTCCAGTGAATGACCTTATTGTTTGAATTGGTTCTAAAATATTTTACATAAACGTTCTTCTCTTGTCTCAGGAGAAATGATATGACTTTATAGGTTCAGACATATTTTAAATAAATGTTCCTTCTCTTGTATCGGGAAGAAATGTTATATACTTAAATAAAGGGAAATTCTCTTTGGTTAGCATCTACATGTATTGTTACAAAAAATGATTCAGTCAAAATATATTAGAAGAAGCACAAATATATATCTTTGGTGCTTCTATCTTGTATGAGTATGAGCAGTCATTCTCACGATATTATTTCATCTATGGTTGTTTTAATGTAGGTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTGGTACCTTCTGAATCAGGCTTTTTGGTGTTCCTCAGTCCTTTTAAGAATTTGAAAACTATAGAAGTGTTATCAAAGGCGCGCTTTAAGCGCGCTTAAGCCATGAAGCGAGGCTCAAAACGTGTTGAGAGCTTCGCCTCGCTTTATGTGAGCTTCAGGGTCGTCATCAAGGTTTTAAGGCAAACGTTTCCTTGCCAATGAGCTTCGTATGAAGAAGTGACACTAAATAATTGATATTTCACTTTCTCATAATTTTTTCAATTTCTTTGGTCATATATTTGGCATTCATGTTTATAATTAATAGTCTTGGACTAAACATATATATTTGTATTCTTTTCTCCCTTTGTGCCTTTTTCATTAAAGTCCACACTTTATTTGCGCTCTACGCTCAAAGCCCTCATGGACCTTAGAGTTTTTTTGTGCTTTTCGCCTTTGATAACACTATACAGAACCCAAATGTGTAACCTAACAATCAACAAATTGGCATTTAATAGAGACCAGGATTTAAATCCCAGAGGTGATTTTTCTCGTTGGTTGACAAAGTTACATGTACTTGTGTTGGTGCTAGGTAGCAAGTATCCAGCGAAATAGTCAAGGTGTGCACAAGTTGACCCAAATGTTATGGTCAGTGTGTTGCCTCAGAAATATTGGACTAAAAGACATAATTATTCCTTAGTGTATTGATTAGCCATTAAACAATCAATAAAGAAGAGAAACCGATAGAAAGATTACCACAAAAAAATTTGGCAGGTATTGAGATTTGAGTCTGACTAAGAAATAAGAGTCCTTTGCAAGGAACTCGTCCTTAAATATTCTGCATTTATTTTTTAAATCCTTTTTTGCTGTAAAAATACTCTCTTTCAGACACCTTTTTAGTTGTTCTTTTGCTGTGATCTATTGTTTATAAATATTAAATCTGGAACCTGGATGCTTTTCTGCAGAGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATAGTGAGTTAAACAGTAGATGCTGTATTGATAAGGTGTTTTTGTTTTGGGATAGATGATCATGATATTTCTCCAGCCACTTAACTCTTGATTTTATATGTTCTGCAGTCTCAGAAACAACCA</genome_strand>
        <mrna_strand>AAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTGCTCCAATG.........................................................................................................AAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATA.........................................................................................................TCTCAGAAACAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302581" ref_strand="+" ref_description="SGN-E302581 [cLEX-1-I10]">
      <seq>gtgatctacacccattacattaataggctgtgttacgtcttcagctcctggttggacaaactgctaatttaaacatgacaccggcaaaacaatatgaaactatgcagtactttataagagcttcttactgcacctactccaatgaaactggcagctatggtccatccatgaggcttcctagagatattcaggagctctctgtatgctgtctgtattacttgcctttcttggacaaggtgatactcgagtctttagcctcatgctgcatatgtcacgagttggaaccatttatccttctccgagtcatggaagttatacactcagcctacaaggctggccatatacagattgcagatcacattagctggttcatcacatcgctcccacgctttcaagtggatcctgagaaaattgatcctatggagaagcacgacaggaagtcaaatcgagggaccttcacagcagcagttacggctgtttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="78726" stop="73737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78572" g_stop="78547" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78546" i_stop="78413" i_length="134">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78412" g_stop="78295" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="144" r_length="118" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105">
            <donor d_prob="0.948" d_score="0.96"/>
            <acceptor a_prob="0.823" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78189" g_stop="78064" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="270" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78063" i_stop="75189" i_length="2875">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75188" g_stop="75054" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="405" r_length="135" r_score="0.919"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75053" i_stop="74116" i_length="938">
            <donor d_prob="0.532" d_score="0.84"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74115" g_stop="74037" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="484" r_length="79" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E302581" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78572" e_stop="78547"/>
          <exon e_start="78412" e_stop="78295"/>
          <exon e_start="78189" e_stop="78064"/>
          <exon e_start="75188" e_stop="75054"/>
          <exon e_start="74115" e_stop="74037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATAAACACCCATTACATTCAAAGGTACCTACTTAGCTACCACCAGTACTGGTCTTTCTTAGGCTGAAATTTATGCTATATGCATATCCATTTGTTCTTCAAGTTTTCACATTGAGCTGAAATTCATCTTGTGCTTCTACAATAATTGCCTCTTGTAGGCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATGGTACTTAAGATTCATCTTCATTTAGTTCCAACTTTTATTTGTTTCATAATTCTGAATCTCACATTATTAATTCCTCACATGTTTTCCCTTTTTCTTGCACTGTAGAAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATATGTAAGTACAACTCCTTGCCATGAATGATTTTTATCTCCTTAACTAGATGGCGATATCAATGTCCTTTACAAAACTAATTGGTGTTCAAATTGTTAAATTGCTTGATGTGTGTGATCATTTGATCTAAAAGTTTGAGTTGTTAGGGAGAGCACACTTCCATTGCATTTTATAACTGTCTAATTGTATGCCCTTGCAGCTTCTTTCTCACTGTCAAATAGTCCTAGATAGATATACTTCCTGCCCCATACATGCTACCCATCATTTGTGCAGAGTGACCCCCCGACACTTGGGTCCTCTCCAAAAATTCTTCTTTGGTGAAATTCTACTTCATCACTGATGTTAAAATCCTTCAACAGCATATAACTAAACAATTTCGAGAACTCTGAAACTTGGGTCCTCTCCTACTCTTCCTCTGTTGTTATCTCTGCTACCGAGACATAGCAATTCTCTGCTCATTTGAAGCATCGTAGTTGGCTAAAAGATCCAACCACCACTGCTGCGGCAACTCAGCCTCTGCAATTACCAATAGAAATAACTCACCAAATCTTCATATTCCTAAACTCTTCGTAGTCATCCCCTTCTCCATGTGTTTTCAGTATATCAAATGCATAACCATTGCAGCGAATATCTGGACATGATACTAATCATCACTGACAGTACTAGATATTTCAATGTAAACAATGGAGGAATTGGAGGTCTAGAATTCTTCATTTAGGTGACAGTTCGTTGAGCTTTTTCCGGTGCTATTTGCCCTTGTATGGAAACGGATTCAACTGGAATATCTCGAAAACTAAGATTAAGATCAAACATCTCAAATTCCCACTACAATATGTCCAAAGTTGCACTAAAAATTTTAAATAATCAAATGGGAATTCAAATTCGATAATCAAAAAATCAAGAATGCAAGAGAACAATCAAATTATGGAGATTGAGTTAAGTATCAGGGATATAAGAAAATGGTAAGTGGGTTGGGGGTGGGAATAAAAAGAAATGTGGTAATATATACACTACACAAATACATTCCTTGTGTATGACACTTTCAAATGTATTATATATAGAGAAGGGACAATGATTAAATGGTAACTACATTGGTTTTGGGCAAAAAAGGATGGGTGGAAGGGGGAGACAGTTACAAACGTTAGAGCAAACAAAGAAAACATTGGGCCGATACTACCTGCCGGTAGGAGAATCTATTGGATCTCTACCAAGACCGTAGAGGCTTTGATACTATCTTGAACTGTTTGCGTGTCTGATCATTTCATCTAAAAGTTTTAATTGATTAGAGAGATCCCATTTATATACTTTATTATGTCTTTATACAAATGTTGCATGATTTGCCTAGTTATTCAGGGATTGGCGGGAATATTGTAATTTAAGAGGTCACCATCTTATATAAAAGTTTGTTGGAGGAATACACTTTAATTTATTCTTTTATATATTCAACATGCTCCCTTGACTGCGAACTTGGTTTTTTTATCGGCCAAGCACGTGGACTGAGGACCATCTTAAGAGGCCGCTTTGAGGTAATATTGAAGTGTGTGACTATCTCATCCAAAAGTTCATGTTGTTAAGAGAACATACTTCTATTTTTTAAAATATATCTTCAATAAGTGTTATAGCTGTTTTGCGAGTGAATCCCATTGATTAAACAAGAAAATAGAAAAGAGGCTAGGAAAATTGAAGGCGCAAAGCTAGGAGTAGCAAAATGGAGAGAAATTGATAGAGCAGAAGAAGGGCTGAATTACTGGTTGAGTAAAAATGTTTGCATGATTCTACCTGAAATATCTTTGAAACTCATATAAAGTTAACCACATGACTTGGATTTTAAGGGTACTTGCCAAATGAGTTACTTGACACTCACATGTCCTCCAATTCCATGGGGGTAAGGTGGGCCTATAGGTCTGGTTTCAACAATGTCACTAACAACTTGAATAAAACCATCTCTAGCATCAGTAAGGTTTTTGCTCCTAGACCAGTTGGACTACCATGAATGCATGACCTATTCTTTTTGAGTCACAGAGTGCAAGTGTGTCATAACATCAATTTTCATCACATTCCTGGAATGCTCAGAGCATGTTGGATTGAAATCATCAGGTCGCGATTCTTTTATCGTGAATAATTCTTTACCGTTTTTTCCACCCCTCTCAAATGGATTCTCAAGCAATTCCTTATTACTCTAACTAATTCGTCACAAATTAAAATATTTCCAATAAATTGTTGTCCCCAGTCAATGTTCTCATCACAAGTGTTGATAATATTATATTATATCATCATAACTATCATCTTCTTCCTCCAGCATATGCCCACTAATTTGTAGCTTTTATGGAGCATGTTTACTGCATTGAACCGGAGGATTATTGTCTCTCAGGTTTTCATTGATGTTCTCTTAAATATTATATTTGATGTTCATGGATCATGAGTGTCACCAATACGTCAGTGTTCCCTAAAAGTTCTTTTTTTGGGTGTGTATTTGTGTTTTTTTTTGTGTTTACAGTAAAATTGGACGAGATTTTGATAGAAGTTTGGCGTATGTTCTTTCAGGCCATGACGGTTCCAGTGAATGACCTTATTGTTTGAATTGGTTCTAAAATATTTTACATAAACGTTCTTCTCTTGTCTCAGGAGAAATGATATGACTTTATAGGTTCAGACATATTTTAAATAAATGTTCCTTCTCTTGTATCGGGAAGAAATGTTATATACTTAAATAAAGGGAAATTCTCTTTGGTTAGCATCTACATGTATTGTTACAAAAAATGATTCAGTCAAAATATATTAGAAGAAGCACAAATATATATCTTTGGTGCTTCTATCTTGTATGAGTATGAGCAGTCATTCTCACGATATTATTTCATCTATGGTTGTTTTAATGTAGGTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTGGTACCTTCTGAATCAGGCTTTTTGGTGTTCCTCAGTCCTTTTAAGAATTTGAAAACTATAGAAGTGTTATCAAAGGCGCGCTTTAAGCGCGCTTAAGCCATGAAGCGAGGCTCAAAACGTGTTGAGAGCTTCGCCTCGCTTTATGTGAGCTTCAGGGTCGTCATCAAGGTTTTAAGGCAAACGTTTCCTTGCCAATGAGCTTCGTATGAAGAAGTGACACTAAATAATTGATATTTCACTTTCTCATAATTTTTTCAATTTCTTTGGTCATATATTTGGCATTCATGTTTATAATTAATAGTCTTGGACTAAACATATATATTTGTATTCTTTTCTCCCTTTGTGCCTTTTTCATTAAAGTCCACACTTTATTTGCGCTCTACGCTCAAAGCCCTCATGGACCTTAGAGTTTTTTTGTGCTTTTCGCCTTTGATAACACTATACAGAACCCAAATGTGTAACCTAACAATCAACAAATTGGCATTTAATAGAGACCAGGATTTAAATCCCAGAGGTGATTTTTCTCGTTGGTTGACAAAGTTACATGTACTTGTGTTGGTGCTAGGTAGCAAGTATCCAGCGAAATAGTCAAGGTGTGCACAAGTTGACCCAAATGTTATGGTCAGTGTGTTGCCTCAGAAATATTGGACTAAAAGACATAATTATTCCTTAGTGTATTGATTAGCCATTAAACAATCAATAAAGAAGAGAAACCGATAGAAAGATTACCACAAAAAAATTTGGCAGGTATTGAGATTTGAGTCTGACTAAGAAATAAGAGTCCTTTGCAAGGAACTCGTCCTTAAATATTCTGCATTTATTTTTTAAATCCTTTTTTGCTGTAAAAATACTCTCTTTCAGACACCTTTTTAGTTGTTCTTTTGCTGTGATCTATTGTTTATAAATATTAAATCTGGAACCTGGATGCTTTTCTGCAGAGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTC</genome_strand>
        <mrna_strand>GTGATCTACACCCATTACATTAATAG......................................................................................................................................GCTGTGTTACGTCTTCAGCTCCTGGTTGGACAAACTGCTAATTTAAACATGACACCGGCAAAACAATATGAAACTATGCAGTACTTTATAAGAGCTTCTTACTGCACCTACTCCAATG.........................................................................................................AAACTGGCAGCTATGGTCCATCCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTGCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGTTGGAACCATTTATCCTTCTCCGAGTCATGGAAGTTATACACTCAGCCTACAAGGCTGGCCATATACAGATTGCAGATCACATTAGCTGGTTCATCACATCGCTCCCACGCTTTCAAGTGGATCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATTGATCCTATGGAGAAGCACGACAGGAAGTCAAATCGAGGGACCTTCACAGCAGCAGTTACGGCTGTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265031" ref_strand="+" ref_description="SGN-E265031 [cLEI-2-M1]">
      <seq>tttttgagaattgcagtgcagagtcctcaatgaaattggcttgcctttctgttgttgaagaaatgctacttcctgagcagaattgcctttatctggatcccaaagatcttgaaatattaaatcatagtacatggataggggagcttccaaagctgttagtcctcttaggtgataaacacccattacattcaaaggctgtgttacgtcttcagcttcgtgttggacaaactgctaatttaagcatgacaccggcaaaagaatatgaaaatatgcagtactttataagagctgtttactgcacctactccaatgaaactgtaagctatggtccattcatgaggcttcctagagatattcaggagcgctctgtatgctgtctgtattacttccctttcttggacaaggtgatactcgagtctttagcctcatgctgcatatgtcacgagttggaaccatttatccttttccgagtcatggaagttctacactcagcctacaaggctggccatatccagattgcagattacattagcttcttcatcacattgctttcacgctttcaagtttatcctgagaaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="79317" stop="74747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79017" g_stop="78944" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78943" i_stop="78667" i_length="277">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78666" g_stop="78547" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="194" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78546" i_stop="78413" i_length="134">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78412" g_stop="78295" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="312" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78189" g_stop="78064" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="438" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78063" i_stop="75189" i_length="2875">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75188" g_stop="75054" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="573" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E265031" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79017" e_stop="78944"/>
          <exon e_start="78666" e_stop="78547"/>
          <exon e_start="78412" e_stop="78295"/>
          <exon e_start="78189" e_stop="78064"/>
          <exon e_start="75188" e_stop="75054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAGAATTGCAGTGCAGAGTCCTCAATGAAATTGGCTTGCCTTTCTGTTGTTGAAGAAATGCTACTTCCTGTAAGATTATCTATCAAAAGAACACATTTTTGATATTCCTAGCATATCTTTGGAGTGTTCACATTTTTAATTTTGTGATAACTCCCTTGTCTTAATCGAAGGGAAAACTCCTTTTGTCTGGTTGCTGTTATCTGTTTAATTGAAGAAAAAGTCTTGTATTAGCAGCCAGCTGGATGAGTAACTTGGATTATCTCTTGTTGCTAGACAATCAGCACAAGGTTGATGTCCCTATATGCTTTCTTCGTTTTATCTAATATCAAACTTTGGGTGATTGTAGGAGCAGAATTGCCTTTATCTGGATCCCAAAGATCTTGAAATATTAAATCATAGTACATGGATAGGGGAGCTTCCAAAGCTGTTAGTCCTCTTAGGTGATAAACACCCATTACATTCAAAGGTACCTACTTAGCTACCACCAGTACTGGTCTTTCTTAGGCTGAAATTTATGCTATATGCATATCCATTTGTTCTTCAAGTTTTCACATTGAGCTGAAATTCATCTTGTGCTTCTACAATAATTGCCTCTTGTAGGCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATGGTACTTAAGATTCATCTTCATTTAGTTCCAACTTTTATTTGTTTCATAATTCTGAATCTCACATTATTAATTCCTCACATGTTTTCCCTTTTTCTTGCACTGTAGAAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATATGTAAGTACAACTCCTTGCCATGAATGATTTTTATCTCCTTAACTAGATGGCGATATCAATGTCCTTTACAAAACTAATTGGTGTTCAAATTGTTAAATTGCTTGATGTGTGTGATCATTTGATCTAAAAGTTTGAGTTGTTAGGGAGAGCACACTTCCATTGCATTTTATAACTGTCTAATTGTATGCCCTTGCAGCTTCTTTCTCACTGTCAAATAGTCCTAGATAGATATACTTCCTGCCCCATACATGCTACCCATCATTTGTGCAGAGTGACCCCCCGACACTTGGGTCCTCTCCAAAAATTCTTCTTTGGTGAAATTCTACTTCATCACTGATGTTAAAATCCTTCAACAGCATATAACTAAACAATTTCGAGAACTCTGAAACTTGGGTCCTCTCCTACTCTTCCTCTGTTGTTATCTCTGCTACCGAGACATAGCAATTCTCTGCTCATTTGAAGCATCGTAGTTGGCTAAAAGATCCAACCACCACTGCTGCGGCAACTCAGCCTCTGCAATTACCAATAGAAATAACTCACCAAATCTTCATATTCCTAAACTCTTCGTAGTCATCCCCTTCTCCATGTGTTTTCAGTATATCAAATGCATAACCATTGCAGCGAATATCTGGACATGATACTAATCATCACTGACAGTACTAGATATTTCAATGTAAACAATGGAGGAATTGGAGGTCTAGAATTCTTCATTTAGGTGACAGTTCGTTGAGCTTTTTCCGGTGCTATTTGCCCTTGTATGGAAACGGATTCAACTGGAATATCTCGAAAACTAAGATTAAGATCAAACATCTCAAATTCCCACTACAATATGTCCAAAGTTGCACTAAAAATTTTAAATAATCAAATGGGAATTCAAATTCGATAATCAAAAAATCAAGAATGCAAGAGAACAATCAAATTATGGAGATTGAGTTAAGTATCAGGGATATAAGAAAATGGTAAGTGGGTTGGGGGTGGGAATAAAAAGAAATGTGGTAATATATACACTACACAAATACATTCCTTGTGTATGACACTTTCAAATGTATTATATATAGAGAAGGGACAATGATTAAATGGTAACTACATTGGTTTTGGGCAAAAAAGGATGGGTGGAAGGGGGAGACAGTTACAAACGTTAGAGCAAACAAAGAAAACATTGGGCCGATACTACCTGCCGGTAGGAGAATCTATTGGATCTCTACCAAGACCGTAGAGGCTTTGATACTATCTTGAACTGTTTGCGTGTCTGATCATTTCATCTAAAAGTTTTAATTGATTAGAGAGATCCCATTTATATACTTTATTATGTCTTTATACAAATGTTGCATGATTTGCCTAGTTATTCAGGGATTGGCGGGAATATTGTAATTTAAGAGGTCACCATCTTATATAAAAGTTTGTTGGAGGAATACACTTTAATTTATTCTTTTATATATTCAACATGCTCCCTTGACTGCGAACTTGGTTTTTTTATCGGCCAAGCACGTGGACTGAGGACCATCTTAAGAGGCCGCTTTGAGGTAATATTGAAGTGTGTGACTATCTCATCCAAAAGTTCATGTTGTTAAGAGAACATACTTCTATTTTTTAAAATATATCTTCAATAAGTGTTATAGCTGTTTTGCGAGTGAATCCCATTGATTAAACAAGAAAATAGAAAAGAGGCTAGGAAAATTGAAGGCGCAAAGCTAGGAGTAGCAAAATGGAGAGAAATTGATAGAGCAGAAGAAGGGCTGAATTACTGGTTGAGTAAAAATGTTTGCATGATTCTACCTGAAATATCTTTGAAACTCATATAAAGTTAACCACATGACTTGGATTTTAAGGGTACTTGCCAAATGAGTTACTTGACACTCACATGTCCTCCAATTCCATGGGGGTAAGGTGGGCCTATAGGTCTGGTTTCAACAATGTCACTAACAACTTGAATAAAACCATCTCTAGCATCAGTAAGGTTTTTGCTCCTAGACCAGTTGGACTACCATGAATGCATGACCTATTCTTTTTGAGTCACAGAGTGCAAGTGTGTCATAACATCAATTTTCATCACATTCCTGGAATGCTCAGAGCATGTTGGATTGAAATCATCAGGTCGCGATTCTTTTATCGTGAATAATTCTTTACCGTTTTTTCCACCCCTCTCAAATGGATTCTCAAGCAATTCCTTATTACTCTAACTAATTCGTCACAAATTAAAATATTTCCAATAAATTGTTGTCCCCAGTCAATGTTCTCATCACAAGTGTTGATAATATTATATTATATCATCATAACTATCATCTTCTTCCTCCAGCATATGCCCACTAATTTGTAGCTTTTATGGAGCATGTTTACTGCATTGAACCGGAGGATTATTGTCTCTCAGGTTTTCATTGATGTTCTCTTAAATATTATATTTGATGTTCATGGATCATGAGTGTCACCAATACGTCAGTGTTCCCTAAAAGTTCTTTTTTTGGGTGTGTATTTGTGTTTTTTTTTGTGTTTACAGTAAAATTGGACGAGATTTTGATAGAAGTTTGGCGTATGTTCTTTCAGGCCATGACGGTTCCAGTGAATGACCTTATTGTTTGAATTGGTTCTAAAATATTTTACATAAACGTTCTTCTCTTGTCTCAGGAGAAATGATATGACTTTATAGGTTCAGACATATTTTAAATAAATGTTCCTTCTCTTGTATCGGGAAGAAATGTTATATACTTAAATAAAGGGAAATTCTCTTTGGTTAGCATCTACATGTATTGTTACAAAAAATGATTCAGTCAAAATATATTAGAAGAAGCACAAATATATATCTTTGGTGCTTCTATCTTGTATGAGTATGAGCAGTCATTCTCACGATATTATTTCATCTATGGTTGTTTTAATGTAGGTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTG</genome_strand>
        <mrna_strand>TTTTTGAGAATTGCAGTGCAGAGTCCTCAATGAAATTGGCTTGCCTTTCTGTTGTTGAAGAAATGCTACTTCCT.....................................................................................................................................................................................................................................................................................GAGCAGAATTGCCTTTATCTGGATCCCAAAGATCTTGAAATATTAAATCATAGTACATGGATAGGGGAGCTTCCAAAGCTGTTAGTCCTCTTAGGTGATAAACACCCATTACATTCAAAG......................................................................................................................................GCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTGTTTACTGCACCTACTCCAATG.........................................................................................................AAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCGCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315427" ref_strand="+" ref_description="SGN-E315427 [cTOA-22-I16]">
      <seq>tggcacctgcttacaagaaaaagaaccttagtatatcggaccaaagtatatcagcagtgactttaaaaaagatatgggatgagtttcctttaagttcgaatcattgcttgtcagagaaggacggtgaccgatatttcatgctgaatattgtaattacagaaatatttttgcatctaagttatgggtccaaattatcacctgggttgctggaaagatttctggagttcattgagagttctctatctgaaaagattcacgatggcagagaggctggtaaagtacatcatgagaagcatttaatttcactggttgcttttatcccaaaactcattatgcaagtgtctgttgcttggaagtcacgtatccttcaggcttttacgaaagtttttgagaattgcagtgcagagtcctcaatgaaattggcttgcctttctgttgttgaagaaatgctacttcctgagcagaattgcctttatctggatcccaaagatcttgaaatattaaatcatagtacatggataggggagcttccaaagctgttagtcctcttaggtgataaacacccattacattcaaaggctgtgttacgtcttcagcttcgtgttggacaaactgctaatttaagcatgacaccggcaaaagaatatgaaaatatgcagtactttataagagctttttactgcacctactccaatgaaactgtaagctatggtccattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="84107" stop="77979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83807" g_stop="83689" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83688" i_stop="82944" i_length="745">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82943" g_stop="82812" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="251" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82811" i_stop="79467" i_length="3345">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79466" g_stop="79347" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="371" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79346" i_stop="79031" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79030" g_stop="78944" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="458" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78943" i_stop="78667" i_length="277">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78666" g_stop="78547" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="578" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78546" i_stop="78413" i_length="134">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78412" g_stop="78295" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="696" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78189" g_stop="78166" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="720" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E315427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83807" e_stop="83689"/>
          <exon e_start="82943" e_stop="82812"/>
          <exon e_start="79466" e_stop="79347"/>
          <exon e_start="79030" e_stop="78944"/>
          <exon e_start="78666" e_stop="78547"/>
          <exon e_start="78412" e_stop="78295"/>
          <exon e_start="78189" e_stop="78166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACCTGCTTACAAGAAAAAGAACCTTAGTATATCGGACCAAAGTATATCAGCAGTGACTTTAAAAAAGATATGGGATGAGTTTCCTTTAAGTTCGAATCATTGCTTGTCAGAGAAGGTACAGTTTCCTTATTGATATTATTTTTCTTCATCCATGTCACTCTCTATTTATTTTTGGAGTTTGTTTTCTTGTTTCCTTAGCTTAACTTTTCTTCCTCCCCACCTCCCCGCTTCCCCTAACTTGGAAACCAGGGAAGAGAAGACACGGGTAGGGAAATGTACTCTTTTCTTTCAGTTGTTAGTTTCCAAGAGAAAGACGAAAGAAAGAGGAAAGTAATGGTTTTCTTGTGGGACCACCTATATTTTAATATTGACGTCTTTAAATATAGGTCTTGAATGCTTGAACTTGTTAAACACTCCAGTCTAAGTTAACTGGATATCTCTGTTCAAACTGTTACTACACTTGGTAATTAGCATGTTAATTTCATGCCACATGCATTTAAAGTTTGAGCTGTGGTTCAAACATTCTTAAACTAGTTTTAGTCTTCAAAGAAACAATACTGTTTTATCAGTGAATAAAGGTTTGGAACAAGAATGCTAGTCCTTCCTATCTCGCATCTCAAAAATATTGTCTTCAATCTTGACAATCATTCCAAACAAGACATCTTTGCTAGAGTAAAGTAGACCATGATTTACCTTGTTGACATCCTTACAAATTTATTGTTAAAATGCTCATACGTTATTGGGTCATGGATGGAATAACTTCTCTTTTTCTTTCTGTTTTCCTTTTCCTTTTGTCCTTTTTCATTGAAAGTAATTTTTCTCTAAATTTTTCTATCTTATTTTTTTTAAAAATATTGCAGGACGGTGACCGATATTTCATGCTGAATATTGTAATTACAGAAATATTTTTGCATCTAAGTTATGGGTCCAAATTATCACCTGGGTTGCTGGAAAGATTTCTGGAGTTCATTGAGAGTTCTCTATCTGAAAAGGTTTGTGATGCTGATTTTAATTTTTATGCCTATGAATGAGAAGTAAGCCCTTCATTTACTTAGTGTAGAGAAAAATAAACTTGGGAGTTAAATTATAGAGCTAAAGGACAATACTGTTGGTGTGGGGTTAATGTTTGATATATTCTGATCGATAATGGTGTTCTGGGATTCGTTTTGGATAGCTCATAGAATCCAGAGTCAGGGAATATGAGCAGGGATAAGAGAATCAAGACCGATATGTTACATAGCAAGAAGCCTACAATCTCCAGGAATCAATATGAATTTAGCATTAAAAGAACATTGGAAGCAAATAGACAATGAGAAAGTGACCAACTAGTGGGGATTACGATTTAGTTGTTGCTGTTGCACTTAAAATTAGGTTCAGGTAGGTCACGTGTGCGATTATTAATGGAACTGTAAATAGCAATTGAAAGCTCTGAACCTGTAAAAGTTTAAGAATGTTGCCGGTGAGAAGTGAAAAAGTAACTCTTTTTGATGACAAGAAGTGAAAAAGTAACTCAGGAATGAGAATGTCATTGCTGAACTTGCCAGCTAGTGTATGTTTCACCATGCCCCAAATATTTGGTCATCCTGTTTTAGGATGGTATTTAATCCACTTTGAAAGTGCGTGTTGGGGGGTTGGGGGGCAGGGGGGGGGGCAAGTCTGAGGGGATACTTATACCTTTTACGGCTTTACCGTAAGAAAAATCATCAGAGCAGCGAAGCCTTTTATCTTGTTGAGCATGGTGGCTCTTTTAATCCTCAATCTGTCATGACCCAAAAATGGACGTGATGGCACTCGTCTTATCCCACCAAGACAGGTAAGCCTAAAACTCAACTATTACAATAAAAATGCGGAAAATTTACTATCAACTTACATTATACCCCAAAACCTGGTTGTCACGTGTACAAGCGTCTAAAGTATTACAATCGGATCAAAAGAAAATATAAGTCTCATATGATATTGTTTCTAGAGTAGAACAAAATCATAAACAAGAGTAAGGAGGGATGCTGAGATGACCAACAACTACCTCACAAAATCTCCAGGAAGCCTCGGAAAAGAAGAGAATATATCATAAAGTCCGGGCTAGTAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCATACGGTACTCAGCAAGTAAACCTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCCAACCGAACCTCCACAACTACAACCTACATAAACATCAGCCCAACCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCCACAACAACACTTTACAAATTATATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTACATATCCTCAATAACACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAAAGGCAATCACTAGATCAGCAAAACACAATATCAAGTTCACTAATGATAAGTATGTGCAATGTAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCGCACAGTTCACAACAACCACAAAAACATGAAGTTACATAAACAATGATTCAACAAGCCTTCAACCCTTTCTCAACACAACACACATAAACAATTAATCACAATGCCTTTTGTTATCCCCATTCTTTTCATCATTAGAATTAATCAATGTGGACAAGTCAACCCATCACCAATCCCGTTACTCCCAACATATACCACAAGGACATACACACATTTCATACACTTAACAAGAGTTTAGAAATCCACTTGCCTCAAATAGTCGAACAATGACTCCAAAACTTGAGCCTTCCTTTTTTTTTTCTCCCTTTCTTTTCTTTTCTTACCTGCATATTTTTTTTTTTCCAGATCGTTCTCTTTCTGTTTCTTTAAGCCATGCGGCTTTTTAATAGCCTAGGGCACTTTGCCCCCTTTTTTTATTATTATTTTATGAATTTATTTAATTAATTCCTTTTCCATTTTTTTAAATTATATATGTATTAAAAGTAACACTTTCTAATAACCTATTTAAATATTTCAAACTTGGCCTATTATTATTAAAAATAAATAAATTACCCGACATTAATTAATTTAGTTAAATGACAATTAAAAATTATCAAAAATGATCTTTTCGGATCCGGGTCATTACACAATCTGAGGTGGCTCTTTGGTTCCTAAAAACTAATAGGAGTTGTTACACGTTTTAGTAAAGCTCTTTTTCTATATGCAGAGAACCATAAATAGAAATCTTGCTTCAAAGTTAACAAGTATAATTTTAGAGGTCTTTCAGGAAAAAACGCTACAAGCTTAGAAGCAATATCTATTAAGAACATGTTATATGGAACTAACTAAAGAATAAAATGTCCTCCAGTAGTCTTCAGTTAATGTCATTGTTTTCTCAATGTTCACTAGGTCTCTTCAGCATACCTGCCTGACTGGTGAAAAATTTTCTGCTCTCTATCTCCTTCGTTGCTTAAATCAGTGAGTTGGTTTTACTTGCCTTTCTCTCTCAAAAAAGGAAAAAGTAAAATGTTCACATTAAAGAATGATATTTTAGTCATAATTTTCTATCATTTTTGTAATGTAATCCTGGAAAATCCTGTCTGTAACCTTTCACAAAAGAAAAGAATAAGTAAATTAGCTTTGACAATATGCACAACACGCAGAGCTTGGGATAAAAATCTAAATGTTAGGCATCATTACTGCTTATTTATTCAGCTCAAAGCTAGATTCTTCGTAGTTGCTTGTTTTCCCCATAAATTTGCGGACCTTCTGAAAATTTCTTGCCTTGCCTTTTTCCCTGTTTCATCTCTCTAATTGTGTTTAAGTTGCCTCTCAAGATGAGTATCTGTGTCTTAGTCCTGATGGTATGCTATAATAGAATACCTATATCCTGCAGATTCACGATGGCAGAGAGGCTGGTAAAGTACATCATGAGAAGCATTTAATTTCACTGGTTGCTTTTATCCCAAAACTCATTATGCAAGTGTCTGTTGCTTGGAAGTCACGTATCCTTCAGGTTTGCACATCAAACTGAAAAACATTTACTTTTTAAGTCAAGTGTCTCTCTAGCAACTTCACCATTTTGTTTTCTTGATTTATGGTTCAGTCTTGTCAAGCAGTTCGAAGAACTATAGTTTTCAGTTTTAGTATCACATATTGGAGGAATTGATAAAAAAAGTTTGACGTTGATTATGTTGTTATTCCTTAATCTTTAGCATGCCCTCAAATTTTCAACTGTATTTAGACCCTAGGATTATGATCCCCTTTTGATTTGTTTTTCATGTGCTGTGTGCTGCCAGTGTTAAAAAGTAAAAATTTTCAATCGATTGCAGGCTTTTACGAAAGTTTTTGAGAATTGCAGTGCAGAGTCCTCAATGAAATTGGCTTGCCTTTCTGTTGTTGAAGAAATGCTACTTCCTGTAAGATTATCTATCAAAAGAACACATTTTTGATATTCCTAGCATATCTTTGGAGTGTTCACATTTTTAATTTTGTGATAACTCCCTTGTCTTAATCGAAGGGAAAACTCCTTTTGTCTGGTTGCTGTTATCTGTTTAATTGAAGAAAAAGTCTTGTATTAGCAGCCAGCTGGATGAGTAACTTGGATTATCTCTTGTTGCTAGACAATCAGCACAAGGTTGATGTCCCTATATGCTTTCTTCGTTTTATCTAATATCAAACTTTGGGTGATTGTAGGAGCAGAATTGCCTTTATCTGGATCCCAAAGATCTTGAAATATTAAATCATAGTACATGGATAGGGGAGCTTCCAAAGCTGTTAGTCCTCTTAGGTGATAAACACCCATTACATTCAAAGGTACCTACTTAGCTACCACCAGTACTGGTCTTTCTTAGGCTGAAATTTATGCTATATGCATATCCATTTGTTCTTCAAGTTTTCACATTGAGCTGAAATTCATCTTGTGCTTCTACAATAATTGCCTCTTGTAGGCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATGGTACTTAAGATTCATCTTCATTTAGTTCCAACTTTTATTTGTTTCATAATTCTGAATCTCACATTATTAATTCCTCACATGTTTTCCCTTTTTCTTGCACTGTAGAAACTGTAAGCTATGGTCCATTCA</genome_strand>
        <mrna_strand>TGGCACCTGCTTACAAGAAAAAGAACCTTAGTATATCGGACCAAAGTATATCAGCAGTGACTTTAAAAAAGATATGGGATGAGTTTCCTTTAAGTTCGAATCATTGCTTGTCAGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTGACCGATATTTCATGCTGAATATTGTAATTACAGAAATATTTTTGCATCTAAGTTATGGGTCCAAATTATCACCTGGGTTGCTGGAAAGATTTCTGGAGTTCATTGAGAGTTCTCTATCTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACGATGGCAGAGAGGCTGGTAAAGTACATCATGAGAAGCATTTAATTTCACTGGTTGCTTTTATCCCAAAACTCATTATGCAAGTGTCTGTTGCTTGGAAGTCACGTATCCTTCAG............................................................................................................................................................................................................................................................................................................................GCTTTTACGAAAGTTTTTGAGAATTGCAGTGCAGAGTCCTCAATGAAATTGGCTTGCCTTTCTGTTGTTGAAGAAATGCTACTTCCT.....................................................................................................................................................................................................................................................................................GAGCAGAATTGCCTTTATCTGGATCCCAAAGATCTTGAAATATTAAATCATAGTACATGGATAGGGGAGCTTCCAAAGCTGTTAGTCCTCTTAGGTGATAAACACCCATTACATTCAAAG......................................................................................................................................GCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATG.........................................................................................................AAACTGTAAGCTATGGTCCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243101" ref_strand="+" ref_description="SGN-E243101 [cLEE-2-C1]">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="81654" stop="80511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81354" g_stop="80793" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E243101" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81354" e_stop="80793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCACATATCCTCAACAACAACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAAAGGCAATCACTAGATCAGCAAAACACAATATCAAGTTCACTAATGATAAGTATGTGCAATGTAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCGCACAGTTCACAACAACCACAAAAACATGAAGTTACATAAACAATGA</genome_strand>
        <mrna_strand>CAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTT--C-ACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577986" ref_strand="+" ref_description="SGN-E577986 [LE08CD09]">
      <seq>taccaccccaaccgaacctccacaactacaacctacataaacatcagcacaacctaacaactcacagtttacatagaacgtaactctacaaaaacatttagacaaattacatatcctccacaacaacactttaacaaattacatatcctcaacatcaacacttaaacaaattagatatcctcaatagcaacacttccaaaaatttacatatcctcaataacacacttcaacaaatcacatatcctcaacaacaacacttcaacaaattatatatcctcaataacaagctcagtattcaacaatcacaagttccgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="81916" stop="80934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81616" g_stop="81411" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81410" i_stop="81348" i_length="63">
            <donor d_prob="0.900" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81347" g_stop="81234" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="319" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E577986" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81616" e_stop="81411"/>
          <exon e_start="81347" e_stop="81234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCACCCCCAACCGAACCTCCACAACTACAACCTACATAAACATCAGCCCAACCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCCACAACAACACTT-TACAAATTATATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTACATATCCTCAATAACACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</genome_strand>
        <mrna_strand>TACCA-CCCCAACCGAACCTCCACAACTACAACCTACATAAACATCAGCACAACCTAACAACTCACAGTTTACATAGAACGTAACTCTACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTA...............................................................CATATCCTCAATAAC-ACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552292" ref_strand="+" ref_description="SGN-E552292 [cTSB-3-H15]">
      <seq>ttacgccaccctcggttccgcgacgacatgccatccgtccccgtcaactttttccggcgactaccgccactttccgatcaaattctctaaagattgttcagtggtgttgttattgtttttttcattattttagccttttagactagtttttcatggttgctctctgtttactttgtgtaaaacatggcaattggcataaaattatttatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="106933" stop="55708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106633" g_stop="106421" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106420" i_stop="105357" i_length="1064">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105356" g_stop="105341" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="229" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E552292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106633" e_stop="106421"/>
          <exon e_start="105356" e_stop="105341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGCCACCCTCGGTTCCGCGACGACATGCCATCCGTCCCCGTCAACTTTTTCCGGCGACTACCGCCACTTTCCGATCAAATTCTCTAAAGATTGTTCAGTGGTGTTGTTATTGTTTTTTTCATTATTTTAGCCTTTTAGACTAGTTTTTCATGGTTGCTCTCTGTTTACTTTGTGTAAAACATGGCAATTGGCATAAAATTATTTATTTAAATTCATTGTTTTGTTTTCTTAATATTGTATGTATATATTTTTGACCGTTGGTGTATTGGGACCAAAAAAATGATAATTGTATACTTTTAAGTTTGGGTTGGTGGGGTGTGTCAAAAAGTGGACCAAATGTTGGATTTTAATGTGAAGTGACCGTTATGTTACTTGCATCTGAAAAAGAACAGAACAGGCATATTGTTTTTAGAGTTAATTGTAAAAAGAACAACTTATAGTTAGAGACATGAAACTCGTAAAACGAAATTATATTTATCGAGACCAATAAAGGACATTAGAGTAGTATATAAAGGTCGAAGGTGAAAAAATGGTATTGAGAAGTTGAGGTTGTGGTTAAATATGGATTTCCACTTCTTATCGAGGAGTTAGAGTTGATTCATGCAAGTCAGAGTAAGGAATTATCCACTTTATCGCCCCGAAGAGCAGCCTACAAAGAAAGACTCCAAAAAGTACCAAATGCTTAATCTTCAGTGTGTAAACATCATAACCAAAAAGTTCCAATCTTTAAATTCCTATGATTTTGCATAAATATATAGCAAAAAGACATCTAATTTCTTATATATGCTAATGTAGCCAAAGGTTGAAGGAGAATACTGCACAAGCAAGAAGGGCATACTATTAAGGTCATCAGTCCCAGTATTTCTACTTCCTGTTTCCGCGAGGCAGAGAAGAAACACGTTGCTCTTATGGCTGTCGTTGATGCTTTGTATTCTGCGAAAAAAAGCAACAGAAGAAAGCTTCTATTGCTGCCAAAGGATACGCCTTTACATCAATCTTTATTGCAGAGTTGTTGTTCCTTCTTGGAGACTAGTTCGCGGGAGGATCCCTCACTTGCTACAAATCAGATGTCGTATAAACCAAGAACGAGTTGCTCCTTGTATAACTCGAGATGAAGGCTTTTCCAGCTGAGGTTGGCTGAGAATAGGCTAACTCGGACTGTTTAAGAACTAAATCCTTGCAAAAACTTTCCCTGCATTAGAAAATGAGAAGCAAGTTCAGACTAAACTTAAATCATAAGCAATCCATATATACGTGGAACTTTGGCGTTCCAGACAGCAAAATATAACA</genome_strand>
        <mrna_strand>TTACGCCACCCTCGGTTCCGCGACGACATGCCATCCGTCCCCGTCAACTTTTTCCGGCGACTACCGCCACTTTCCGATCAAATTCTCTAAAGATTGTTCAGTGGTGTTGTTATTGTTTTTTTCATTATTTTAGCCTTTTAGACTAGTTTTTCATGGTTGCTCTCTGTTTACTTTGTGTAAAACATGGCAATTGGCATAAAATTATTTATTTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228898" ref_strand="+" ref_description="SGN-E228898 [cLEL-29-M10](-)">
      <seq>gtctttagctaacaagtttgatttgaagacccttcgagccctcagtttcgttttgatggagaatcttaaaggaaaacttagagatctctncggtacacctgatacagccgagttctcatcaactttagatgcatgtaatttgttgaattatgttcgagacaagacttttgcaaatatgggggttgaacagctgagctcctacatttgcaacgacaagaggaagagaattttggagatgttttctgaagacatggctccaaatagaaagcagaggagttaacagtgacaacagtagatccatgtagcaatataatttaattcctaaaatgtaatattcaaattttgatgttagggaatattattttccatttttgctttcattttttgaactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="117352" stop="114353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117052" g_stop="117009" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117008" i_stop="115687" i_length="1322">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115686" g_stop="115494" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="237" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115493" i_stop="114815" i_length="679">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114814" g_stop="114661" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="391" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="408"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E228898" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117052" e_stop="117009"/>
          <exon e_start="115686" e_stop="115494"/>
          <exon e_start="114814" e_stop="114661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTAGCTAACAAGTTTGATTTGAAGACCCTTCGAGCCCTCAGTGAGTTTTTTCTTGCTCCTCTCCATAAGTTTGTAACATTTATTCATTACTTGAATGGTGCATCATCTATAAACTGCTGTTTGCTGTAAAAATTGGTGAATTCTTTGTCTGTTTTTACGTTCTTTCAGATGGATAGTAACTTCTGTTGTAAAAAATATTGTTACACTTGAGCTCGATAACGAAAAAATTGCACATTTATAGCTAGTAAAGAACAAGGGAGAAGGAAAGAATGAAATCAGAAGATAAGAAGAGGGGTTATGAGAGGAGAGAACTCAGGTTTTCAGTCATTACATCTTTATAATACTTCCAAATATAATTTAAAGAAAGATAGGTAAAATGGGCAAACAAGTCGGAGATGACATATTAGAGGGTTCTAGAAGGCTTAGTATGTACTAGGAGCGTCTTGAAAGAGCGTTTATCTATGAAGAGTGTTAATGGAATCATAAGCATCCATGAGGGTGACAGGGTTGGCTATCCTCACTAGAGACTTGATTCTCTTGTTTCTATACATTGACAAATCAAGTTACAAAGTGTAATTCTGCAAGATAAAGGTTAATCATCATCATTTTGGTTGCTCCTTATAACTGTCCACATTTCCACATCGCTGAAGTTTATTGAACTTATATATAAAATCGCTAAACCTCCCGAACATTAGCCAAGATAGAACATCCACTGGGAATCCTTTAAGTGCTCATTAAATCAGTAATTAACTCGATTCATTACTTGTTAAACATAATTCAGCTTCATCTATCTAAGAATTTGATTGGTTTCAAAATATTTTCCTTTCCTTCTAATCCAGCCCTCGGATTGATGCCACCAAATTCAGGAAAATAAAGCTTCATTTTCGGAGCTTCTGTGCTGAATAGGGGATGTGATTTGGTACTGGTTCAATCACAGAAGCGAGAAGCGGGGTGAAGTAGTAAGCACAGAGCAATTACTGCTTCTTCTTATAAGAAGATAAGAAGAAGAATCATAGCTTATACATAACTTGGTATTTAGAAACACAATATATTTTTTCACATTTCTTAAAAGTTGCTTCTTCTTGTGTTGTGTTGTTTGTCCTGCATGAATATCTTGCACTACTCTAACTTCAAAAAACTTTACCATATATGCCTTAATGCGATCAGGTTTACTCCCCTGGATATTTTGCAAAACAATTCACATAATCACACCTGTTTTTCGGCTGCCAAGGCTTTAACCTTACCAAAGTCTTTTTCAGTGTAACTATTACTCTTAGTTATAACTTGCAAAAAGAATCCATGTAGTTGACATGTATCACACGTTGGTTTAACTGAAGTTTTGATCACTTCACTATCTGGCAGGTTTCGTTTTGATGGAGAATCTTAAAGGAAAACTTAGAGATCTCTCCGGTACACCTGATACAGCCGAGTTCTCATCAACTTTAGATGCATGTAATTTGTTGAATTATGTTCGAGACAAGACTTTTGCAAATATGGGGGTTGAACAGCTGAGCTCCTACATTTGCAACGACAAGAGGAAGAGAATTTTGGAGATGTAAGTTCTCTAGAACTCATTTAATCATTACCCGTAAGTTGATTTATGGATCATATTGGATATTATTCTGAAGTCATTCTTCCGGTCCATCCTCGCCTATGATTCCCCAACTTGTAGATATCTCAGTTGAGACAAAGATCACTAGGTGATTTCTTCTCGTTTGTCTAAGTTTTGGTGGACAAAGTTACGTGGTACCTGTTGGTGGTGGGAGGTAGTAGGTATACCGTTGAATAACCGAGGTGCACGCAAGCTGGCTCCAGATACCACGATTATAAGACAAAAAGCATAACTTCACGATTCATGCATTTTTTGAGCAATCTCATTTTCTGAAATTTAATCAGATACGCATAAAACTTTTGGTTTCCTCGATACGTTAAGTCACATTATATTCTATAGTTTATAGGTCTGGTAAAAAAAAAATTATCTCCCCTGGTGTCTGGTTATCCTCAGGGCCGCGACTAATTCAGATTCATGTTGTGTAAGGCCCATTCCAGAGGGAAGCACTCCTTTTCATGGTTTTTTCTATTCTCAGGGCTTGAGCCTAAAACCTTTGGTTATACGTCTTGTAATTGTACTCTAGATATCGGGCATTTCGATATTATTTTTCGTCTTTTCGAAGATACATGATTTCAGACCTACACTGCTTGTGTAATTTTGAACTATATTATGTGTGCTGTAGGTTTTCTGAAGACATGGCTCCAAATAGAAAGCAGAGGAGTTAACAGTGACAACAGTAGATCCATGTAGCAATATAATTTAATTCCTAAAATGTAATATTCAAATTTTGATGTTAGGGAATATTATTTTCCATTTTTGCTTTCATTTTTTGAACT</genome_strand>
        <mrna_strand>GTCTTTAGCTAACAAGTTTGATTTGAAGACCCTTCGAGCCCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTTTGATGGAGAATCTTAAAGGAAAACTTAGAGATCTCTNCGGTACACCTGATACAGCCGAGTTCTCATCAACTTTAGATGCATGTAATTTGTTGAATTATGTTCGAGACAAGACTTTTGCAAATATGGGGGTTGAACAGCTGAGCTCCTACATTTGCAACGACAAGAGGAAGAGAATTTTGGAGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTGAAGACATGGCTCCAAATAGAAAGCAGAGGAGTTAACAGTGACAACAGTAGATCCATGTAGCAATATAATTTAATTCCTAAAATGTAATATTCAAATTTTGATGTTAGGGAATATTATTTTCCATTTTTGCTTTCATTTTTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228994" ref_strand="+" ref_description="SGN-E228994 [cLEL-29-M10](-)">
      <seq>gaattgaagatgtcggtggctttgttccttaaccgaatctgagcttgatttattgataggtttgaaagttctgatacaacaacgtgccaaaaagattggtcacaagtctttagctaacaagtttgatttgaagacccttcgagccctcagtttcgttttgatggagaatcttaaaggaaaacttagagatctctccggtacacctgatacagccgagttctcatcaactttagatgcatgtaatttgttgaattatgttcgagacaagacttttgcaaatatgggggttgaacagctgagctcctacatttgcaacgacaagaggaagagaattttggagatgttttctgaagacatggctccaaatagaaagcagaggagttaacagtgacaacagtagatccatgtagcaatataatttaattcctaaaatgtaatattcaaattttgatgttagggaatattattttccatttttgctttcattttttgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="-" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="117539" stop="114353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117239" g_stop="117193" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117192" i_stop="117112" i_length="81">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117111" g_stop="117009" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="149" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117008" i_stop="115687" i_length="1322">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115686" g_stop="115494" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="342" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115493" i_stop="114815" i_length="679">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114814" g_stop="114663" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="494" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="513"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="-" ref_id="SGN-E228994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117239" e_stop="117193"/>
          <exon e_start="117111" e_stop="117009"/>
          <exon e_start="115686" e_stop="115494"/>
          <exon e_start="114814" e_stop="114663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGAAGATGTTCGGTGGCTTTGTTCCTTAACCGAATCTGAGCTTGTAAGTTATCTCTGCTCATTTTTTCCTTTTTCTTTTGGGTGATGACCAATATCTTATGCGTGATCTGGTTGAATTTTTTAGGATTTATTGATAGGTTTGAAAGTTCTGATACAACAACGTGCCAAAAAGATTGGTCACAAGTCTTTAGCTAACAAGTTTGATTTGAAGACCCTTCGAGCCCTCAGTGAGTTTTTTCTTGCTCCTCTCCATAAGTTTGTAACATTTATTCATTACTTGAATGGTGCATCATCTATAAACTGCTGTTTGCTGTAAAAATTGGTGAATTCTTTGTCTGTTTTTACGTTCTTTCAGATGGATAGTAACTTCTGTTGTAAAAAATATTGTTACACTTGAGCTCGATAACGAAAAAATTGCACATTTATAGCTAGTAAAGAACAAGGGAGAAGGAAAGAATGAAATCAGAAGATAAGAAGAGGGGTTATGAGAGGAGAGAACTCAGGTTTTCAGTCATTACATCTTTATAATACTTCCAAATATAATTTAAAGAAAGATAGGTAAAATGGGCAAACAAGTCGGAGATGACATATTAGAGGGTTCTAGAAGGCTTAGTATGTACTAGGAGCGTCTTGAAAGAGCGTTTATCTATGAAGAGTGTTAATGGAATCATAAGCATCCATGAGGGTGACAGGGTTGGCTATCCTCACTAGAGACTTGATTCTCTTGTTTCTATACATTGACAAATCAAGTTACAAAGTGTAATTCTGCAAGATAAAGGTTAATCATCATCATTTTGGTTGCTCCTTATAACTGTCCACATTTCCACATCGCTGAAGTTTATTGAACTTATATATAAAATCGCTAAACCTCCCGAACATTAGCCAAGATAGAACATCCACTGGGAATCCTTTAAGTGCTCATTAAATCAGTAATTAACTCGATTCATTACTTGTTAAACATAATTCAGCTTCATCTATCTAAGAATTTGATTGGTTTCAAAATATTTTCCTTTCCTTCTAATCCAGCCCTCGGATTGATGCCACCAAATTCAGGAAAATAAAGCTTCATTTTCGGAGCTTCTGTGCTGAATAGGGGATGTGATTTGGTACTGGTTCAATCACAGAAGCGAGAAGCGGGGTGAAGTAGTAAGCACAGAGCAATTACTGCTTCTTCTTATAAGAAGATAAGAAGAAGAATCATAGCTTATACATAACTTGGTATTTAGAAACACAATATATTTTTTCACATTTCTTAAAAGTTGCTTCTTCTTGTGTTGTGTTGTTTGTCCTGCATGAATATCTTGCACTACTCTAACTTCAAAAAACTTTACCATATATGCCTTAATGCGATCAGGTTTACTCCCCTGGATATTTTGCAAAACAATTCACATAATCACACCTGTTTTTCGGCTGCCAAGGCTTTAACCTTACCAAAGTCTTTTTCAGTGTAACTATTACTCTTAGTTATAACTTGCAAAAAGAATCCATGTAGTTGACATGTATCACACGTTGGTTTAACTGAAGTTTTGATCACTTCACTATCTGGCAGGTTTCGTTTTGATGGAGAATCTTAAAGGAAAACTTAGAGATCTCTCCGGTACACCTGATACAGCCGAGTTCTCATCAACTTTAGATGCATGTAATTTGTTGAATTATGTTCGAGACAAGACTTTTGCAAATATGGGGGTTGAACAGCTGAGCTCCTACATTTGCAACGACAAGAGGAAGAGAATTTTGGAGATGTAAGTTCTCTAGAACTCATTTAATCATTACCCGTAAGTTGATTTATGGATCATATTGGATATTATTCTGAAGTCATTCTTCCGGTCCATCCTCGCCTATGATTCCCCAACTTGTAGATATCTCAGTTGAGACAAAGATCACTAGGTGATTTCTTCTCGTTTGTCTAAGTTTTGGTGGACAAAGTTACGTGGTACCTGTTGGTGGTGGGAGGTAGTAGGTATACCGTTGAATAACCGAGGTGCACGCAAGCTGGCTCCAGATACCACGATTATAAGACAAAAAGCATAACTTCACGATTCATGCATTTTTTGAGCAATCTCATTTTCTGAAATTTAATCAGATACGCATAAAACTTTTGGTTTCCTCGATACGTTAAGTCACATTATATTCTATAGTTTATAGGTCTGGTAAAAAAAAAATTATCTCCCCTGGTGTCTGGTTATCCTCAGGGCCGCGACTAATTCAGATTCATGTTGTGTAAGGCCCATTCCAGAGGGAAGCACTCCTTTTCATGGTTTTTTCTATTCTCAGGGCTTGAGCCTAAAACCTTTGGTTATACGTCTTGTAATTGTACTCTAGATATCGGGCATTTCGATATTATTTTTCGTCTTTTCGAAGATACATGATTTCAGACCTACACTGCTTGTGTAATTTTGAACTATATTATGTGTGCTGTAGGTTTTCTGAAGACATGGCTCCAAATAGAAAGCAGAGGAGTTAACAGTGACAACAGTAGATCCATGTAGCAATATAATTTAATTCCTAAAATGTAATATTCAAATTTTGATGTTAGGGAATATTATTTTCCATTTTTGCTTTCATTTTTTGAA</genome_strand>
        <mrna_strand>GAATTGAAGATG-TCGGTGGCTTTGTTCCTTAACCGAATCTGAGCTT.................................................................................GATTTATTGATAGGTTTGAAAGTTCTGATACAACAACGTGCCAAAAAGATTGGTCACAAGTCTTTAGCTAACAAGTTTGATTTGAAGACCCTTCGAGCCCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTTTGATGGAGAATCTTAAAGGAAAACTTAGAGATCTCTCCGGTACACCTGATACAGCCGAGTTCTCATCAACTTTAGATGCATGTAATTTGTTGAATTATGTTCGAGACAAGACTTTTGCAAATATGGGGGTTGAACAGCTGAGCTCCTACATTTGCAACGACAAGAGGAAGAGAATTTTGGAGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTGAAGACATGGCTCCAAATAGAAAGCAGAGGAGTTAACAGTGACAACAGTAGATCCATGTAGCAATATAATTTAATTCCTAAAATGTAATATTCAAATTTTGATGTTAGGGAATATTATTTTCCATTTTTGCTTTCATTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720991" ref_strand="+" ref_description="SGN-E720991 [FC12BH01]">
      <seq>tcggccgaaatggctctgtttttttcccttttttttcatttttcatgtgtttggtatgccggaaattgatgtattagttgccggagtttgagaaaagaagtcccttttcccctttttgtgtaatttcatgtattgggtttgttgggtgttgacggatttgttgccggagtttgagagaagaaaactcccttatcccctgttttttttttattttttacttgttggatttgccgggaattgacgtattggttgccggaaattgaaaaaaaaactcccttttccccttttgtaatttcatgtgttgggttagctgggcgttgacgtattatttgccggagtttgaaaaaaaaaaactcatttatcccctgtttttccatttttttacttggggggttcgccgggaattgacgtattggttgccggatttcgaggaaaagcaccccttttttttatctgattcatttattgggtttgcagggaattgcgtgttatttgccggatttcaaaaaaaaaaaacaccctttttcacctgattcagttattggttttgccgggaattgcacgttattacccggatttcaaaaaaaaactccctttttcagctgattcagttattgggtttggaaggaattgtgtgttatttgccggatttcaaaaaaaaactccctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="141398" stop="142657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141699" g_stop="142357" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="673" r_length="660" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E720991" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141699" e_stop="142357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTTTTTTCCATTTTTTTTCATTTTTCATGTGTTTGGTATGCCGGAAATTGATGTATTAGTTGCCGGAGTTTGAGAAAAGAAGTCCCTTTTCCCCTTTTTGTGTAATTTCATGTATTGGGTTTGTTGGGTGTTGACGGATTTGTTGCCGGAGTTTGAGAGAAGAAAACTCCCTTATCCCCT-TTTTTTTTTT-TTTTTTACTTGTTGGGTTTGCCGGGAATTGACGTATTGGTTGCCGGAGATTGAGAAAAGAACTCCCTTTTCCCCTTTTGTAATTTCATTTGTTGGGTTAGCTGGGCGTTGACGTATTAGTTGCCGGAGTTTGAGAGAAGAAAACTCATTTATCCCCTGTTTTTCCATTTTTTTACTTGTGGGGTTCGCCGGGAATTGACGTATTGGTTGCCGGAGTTCGAGGAAAAGCACCCCTTTTTTTTTATCTGATTCAGTTATTGGGTTTGCAGGGGATTGCGTGTTAGTTGCCGGAGTTCGAGAAAAAAAAACACCCTTTTTCAGCTGATTCAGTTATTGGTTTTGCCGGGGATTGCACGTTAGTAGCCGGAGTTCGAGAAAAAACTCCCTTTTTCAGCTGATTCAGTTATTGGGTTTGGAAGGGATTGTGTGTTAGTTGCCGGAGTTCGAGAAAAAACTCCCTTTTTC</genome_strand>
        <mrna_strand>CTCTGTTTTTTTCCCTTTTTTTTCATTTTTCATGTGTTTGGTATGCCGGAAATTGATGTATTAGTTGCCGGAGTTTGAGAAAAGAAGTCCCTTTTCCCCTTTTTGTGTAATTTCATGTATTGGGTTTGTTGGGTGTTGACGGATTTGTTGCCGGAGTTTGAGAGAAGAAAACTCCCTTATCCCCTGTTTTTTTTTTATTTTTTACTTGTTGGATTTGCCGGGAATTGACGTATTGGTTGCCGGAAATTGAAAAAAAAACTCCCTTTTCCCCTTTTGTAATTTCATGTGTTGGGTTAGCTGGGCGTTGACGTATTATTTGCCGGAGTTTGAAAAAAAAAAACTCATTTATCCCCTGTTTTTCCATTTTTTTACTTGGGGGGTTCGCCGGGAATTGACGTATTGGTTGCCGGATTTCGAGGAAAAGCACCCC-TTTTTTTTATCTGATTCATTTATTGGGTTTGCAGGGAATTGCGTGTTATTTGCCGGATTTCAAAAAAAAAAAACACCCTTTTTCACCTGATTCAGTTATTGGTTTTGCCGGGAATTGCACGTTATTACCCGGATTTCAAAAAAAAACTCCCTTTTTCAGCTGATTCAGTTATTGGGTTTGGAAGGAATTGTGTGTTATTTGCCGGATTTCAAAAAAAAACTCCCTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344439" ref_strand="+" ref_description="SGN-E344439 [cTOF-14-E24]">
      <seq>atggagaattcttcttcggaaaatcttgacgatggagagttatggctaccttctgatatttttccagtagaagaaactgtttcttctgctaataataagctcaaaaacaacaaccccattgcttcttctctttgctgttgttactcttgtgttcttcttcttcgtcatcctcataactccattttcatggctgaacaacaagttctacagagtgttccaaagccatttcccataactgagcggcggttcagaccggctgagaggtgttgcacctgtacagattgttcaatttcagactattttgaacggagtagaagagaaacaaccggtccaccaccggtttatccaccggttcaacttcaccaccaggttgagagtttgatggaagttagagctccatttttacagaaggaagaacagagccggttcatcgggattcagagaagaaacctcggcctgaaccggttcgccggtaactgggtttcgccgtttgtgggtttcggtggcaatggctgtggttttaatggtgaaagtagttctgtgagagattatggtggaactggtgtcttcctccctagaatacctagcaacatcaacaacaatggtggaaagaaaacaggtggtagaaataggcaagatgttcaacanactgatcaaagatatccatgcatatgagaaatggcaaaaacctaaagaattggacctaatggatatatagtaatttggtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="146461" stop="150378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146761" g_stop="147000" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147001" i_stop="147451" i_length="451">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="147452" g_stop="147580" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="369" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="147581" i_stop="147660" i_length="80">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147661" g_stop="147910" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="619" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="147911" i_stop="149966" i_length="2056">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149967" g_stop="150078" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="731" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E344439" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146761" e_stop="147000"/>
          <exon e_start="147452" e_stop="147580"/>
          <exon e_start="147661" e_stop="147910"/>
          <exon e_start="149967" e_stop="150078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGAATTCTTCTTCGGAAAATCTTGACGATGGAGAGTTATGGCTACCTTCTGATATTTTTCCAGTAGAAGAAACTGTTTCTTCTGCTAATAATAAGCTCAAAAACAACAACCCCATTGCTTCTTCTCTTTGCTGTTGTTACTCTTGTGTTCTTCTTCTTCGTCATCCTCATAACTCCATTTTCATGGCTGAACAACAAGTTCTACAGAGTGTTCCAAAGCCATTTCCCATAACTGAGGTAAAAGGGGTTTTCCCATTAAATCTCTAATTATTTGTTACATTAGTAGTTTAGTACTGGCATTTTGCTCTGTTTTTGTTTTTGTTTTTTTTTCGAATTTCGCCATTGTTGTAGATGTTCAAAGCTTCTTCTTCATTTCTACTTACTGTTTTTCCATAAGCTAAAAAACAACCCCATCGGTTCTTCTCTTTGCTGTTGTTACGCTTGTGTTCTTCTTCTTCTTCATCATCATCATAGCTCCATTTTCATGGCTGAACAAGTTCTTCACAGTTTTCCCAAGCCATTTCCCGTTGCTGAGGTAAAAGGGGTTCTCCATAGAATCTCTAGGTTTTCGTTACATTAGTACAGCGTTTTTGCTCTGTTTTGTTTTTTTTCTTCGAATTTCGCCATTGTTGCAGAGGTTCAGACCTCCTTCTTCATTTTTACTTACTGTTTTTTCTCGATATTGCAGCGGCGGTTCAGACCGGCTGAGAGGTGTTGCACCTGTACAGATTGTTCAATTTCAGACTATTTTGAACGGAGTAGAAGAGAAACAACCGGTCCACCACCGGTTTATCCACCGGTTCAACTTCACCACCAGGTAGAAATCAAAATCTAAACAAAATGGGTTTGATTTTCATCGAGTTATTTCTCGATTTTTCAATTTTTGTTTCTGTATAGGTTGAGAGTTTGATGGAAGTTAGAGCTCCATTTTTACAGAAGGAAGAACAGAGCCGGTTCATCGGGATTCAGAGAAGAAACCTCGGCCTGAACCGGTTCGCCGGTAACTGGGTTTCGCCGTTTGTGGGTTTCGGTGGCAATGGCTGTGGTTTTAATGGTGAAAGTAGTTCTGTGAGAGATTATGGTGGAACTGGTGTCTTCCTCCCTAGAATACCTAGCAACATCAACAACAATGGTGGAAAGAAACAAGGCAAGTCAATCATATCCTCGAGTTACGTTGCTCGGATTCTTCAAAAACGTTGACGGATGCTTGTCGAATTCAATAACGATAAGGATGTGTTGACATTTTTGAAGAGCGTGAGTAACATAATTGTTTTGAGTTACTAATCTCTTATTTTTTTGAATATTATCCATTAATTGTGGGTTATCTCGATTAATGAGCCGAGAGGTCGATCATATCTTCTTCAAACCTCACTTATGAAAATATATATGTTGCTACATTACACTACATTCAATGTAGAGATAACAATGAGACGGATTTCGACATGCTTTGCCTCGTTTTGCATAACATTATCTCCTGGTCTCTATCTGTCTCGCCTCGTTGCCATCCCTAGTTCAATGTGAATACACATGCCCTAGTCTTAGTTTAAAAGCTCAACAAGTTGAAAAACATTGTCATCACATGCTAAACGCTACTCTTTTCGTTATTCTTTCCGTTTCAATTTGTATGAATGATTTTAGTTTGACTAAGATTAGTAATCAAAAAGAACAAAAGAATAAAGCTTTTGTCATGTAAGTTTGTATAATAGGGTATGACATTTGGCAAGAGGGGGTTTTGCTCATAAAGTAAGTGTTTTCTACTTTTTGATCTTAAAGTTGTGGGCTTGAATCTTAAAGTGAACGAAAAGGTGAGTGGTGAAATTATTTAAAATGAAATTCTAAGTTAAACTTACACTTATCTTGACTAATTTCACGATAGGTATTGTATAATTCTATCTATCAAATCTAGGATAGATTGTGTGGTATACTAGTATGAACAAGTGTAACATGAATAGATTGTTGTAGTCCGATCCTCTTTCGAACTTTGTTCATAGTGAAAGCTTAGTGCATCGAACTATTCTTTGAAGAATATGATGTTCTTAGGGATGGTAGAATTCTCCATTTTCTTTATTTGGTTTTGACAAGAAGTAGAGGAAGGGAGAAACAAGTTTTATGACTTAATCTTAGGTGAGTTAGTCGAGGAATTATTGGAAATAACCTCTGTATCTCTCAATTAAGAGTAAGATCTACGTATCTCCTATCCTCTTTTAGTATCTCTCTATTAAGAGTAAGATCTACGTATCTCCTATCCACTCTTAGTCAGACCCCATTTTGTATGTCTCTATTAAGAGTAAGATCTACGTATATCCTATACTATCCTCTCCTAGCCAGATTCCATTGTGTGAAACTACATTGGATATGTCGTTGTTCTTAGTTTAGGTAAGTTATAATTATATCACTCTATGAACTTTTATCAATTTTTCACGACTTGTTCTTAGTTGAGTGAAATATTTTCTTTGTTTCCTTTTTCACCCTTTTTTTCTGATAGGGCACACATGAAAAAAGTGGTTTTTTGGGGAAAAGCAACTGACATCTGACCCTCTCTTGTATCTTTTGGTTATATATGGCAGATCATTCTGAAATTTCATTTTCTCATAGTATAGTTAGGTTGTTTACCTCTTGAATGCTAACCCCCACCCCCCTAAACACCCTCCGAACAAAATTAGCTCATGAAAACATAACGTGTTCAAGCATGAGTTGTTTGTGAACCCACTTACTAGCCCATTTAAGAACAAATGGAGCTTTTGGGCGGCTCGATAGTCTGCATGTTCAGTTTTAACTCAATCCGTCCATTTGACACCTCTTCTAGTAGCTACTAAGATGTGAACAAGATTATGAACTTTTAGGTTATGAGAATTAATGATTGTGTATTCACAAAAACGGTTGTCTCGGTGCATGAATCATCCCACTTTCACTTAGGGTCCAGAGAAGAAGGGTCATTGACCAAAGTAGTGTAATGTAGACACGCTATCTCGAGACAAAAATAATAACCAATTCCACTGTTCGAGCTCGTAACCTATTGAAAACAACCTCTATCCTTACAACGTACACCACTCCTCTCAGAGGATTATATTGAATATCTTATTATTGTTGTGAACCCTAACCTATTGATTATACCGAGATAACTTTATTATAGCTCAGATTTTTCATGTGTATGTAGTGTGTTTTTGTAGGGTCAAATTCTGATTCATTTTTCTGTATGACAGGTGGTAGAAATAGGCAAGATGTTCAACAAACTGATCAAAGATATCCATGCATATGAGAAATGGCAAAAACCTAAAGAATTGGACCTAATGGATATATAGTAATTTGGTCATT</genome_strand>
        <mrna_strand>ATGGAGAATTCTTCTTCGGAAAATCTTGACGATGGAGAGTTATGGCTACCTTCTGATATTTTTCCAGTAGAAGAAACTGTTTCTTCTGCTAATAATAAGCTCAAAAACAACAACCCCATTGCTTCTTCTCTTTGCTGTTGTTACTCTTGTGTTCTTCTTCTTCGTCATCCTCATAACTCCATTTTCATGGCTGAACAACAAGTTCTACAGAGTGTTCCAAAGCCATTTCCCATAACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGGTTCAGACCGGCTGAGAGGTGTTGCACCTGTACAGATTGTTCAATTTCAGACTATTTTGAACGGAGTAGAAGAGAAACAACCGGTCCACCACCGGTTTATCCACCGGTTCAACTTCACCACCAG................................................................................GTTGAGAGTTTGATGGAAGTTAGAGCTCCATTTTTACAGAAGGAAGAACAGAGCCGGTTCATCGGGATTCAGAGAAGAAACCTCGGCCTGAACCGGTTCGCCGGTAACTGGGTTTCGCCGTTTGTGGGTTTCGGTGGCAATGGCTGTGGTTTTAATGGTGAAAGTAGTTCTGTGAGAGATTATGGTGGAACTGGTGTCTTCCTCCCTAGAATACCTAGCAACATCAACAACAATGGTGGAAAGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGAAATAGGCAAGATGTTCAACANACTGATCAAAGATATCCATGCATATGAGAAATGGCAAAAACCTAAAGAATTGGACCTAATGGATATATAGTAATTTGGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362187" ref_strand="+" ref_description="SGN-E362187 [cLPP-11-P3]">
      <seq>atatattgctcatcaacaaacaattccttcatcatataacaattctagttttatcatgcctattacttacaataattaccctaacaataatcataataataattcatatagtgtgaattattcccaaaaatatttaccattgcaagatcaaattggtaacaacatcaacaataattcaacgtagttcggtctgttatttaacaaccatgatgttaattctagttatgtctatgatcaagtttagagtaaacatatggatgttatccggaaaagaaaaacctcaattgcaaataatgtcattgcaagtgccatcaggactcatgatcacaagttcatcaatgttacgtaattggcaagttaatatatcaatgaacaatccaaataatgagctagctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="151374" stop="152373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151674" g_stop="152073" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E362187" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151674" e_stop="152073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATTTCTCATCAACAAACAATTCCTTCATCATATGACAATTCTAGTTTTATCATGCCTAGTACTTACTATAATTACCCTAACAATAACAATCATAATAATAATTCATATAGTGTGAATTATTCCCAAAAATATTTACCATTGCAAGATCAAATTGGTACCAACATCAACAATAATTCAACGTCGTTCGGTC-GTTATTTAACGACCATGATGTTAATTCTAGTCATGTCTATGATCATGTTCAGTGTAATCATATGGATGTTATTTGGAAAAGAAAGGCCTCAGTTTCAAATCATGTCATTACAAGTCCCAACAGGACTCATGATCACAAGTACATCAATGTTAGGTAATTGGCAAGTTAATGTATCAATGAAGAATCCAAATAATGAGCTAGCTATA</genome_strand>
        <mrna_strand>ATATATTGCTCATCAACAAACAATTCCTTCATCATATAACAATTCTAGTTTTATCATGCCTATTACTTACAATAATTACCCTAACAAT---AATCATAATAATAATTCATATAGTGTGAATTATTCCCAAAAATATTTACCATTGCAAGATCAAATTGGTAACAACATCAACAATAATTCAACGTAGTTCGGTCTGTTATTTAACAACCATGATGTTAATTCTAGTTATGTCTATGATCAAGTTTAGAGTAAACATATGGATGTTATCCGGAAAAGAAAAACCTCAATTGCAAATAATGTCATTGCAAGTGCCATCAGGACTCATGATCACAAGTTCATCAATGTTACGTAATTGGCAAGTTAATATATCAATGAACAATCCAAATAATGAGCTAGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547745" ref_strand="+" ref_description="SGN-E547745 [TUS-71-M14]">
      <seq>tattcttctataatttttcttaataaaatagattagaagaattcataggggatttagtaaaaaaaaataattaaattaatgggaaaggaagaagaaaaaccagttttgggatatcaaaaatcagaatattcttatcaaacaaatcctcaattttaccaatcagaccctcaattttatcaatattatgaatataattaccctgcaaggcccctaccttatgtctcccctgatgtagatcaagggttttcatttggcagagtcatggtctgcctaatggtatttttatttttatttgcaatgattataagtatgtttactatgatgatatttatgacaatgaaacctatatttaatttggaatcgttcgaggtccgcgcattcaatttatcaggaaatggcggacctggaacaacgttgaaggctagttgggagacgaaagtatcggttaaaaatataaatactaggtcgtcagtgcttttgaatcaagttgaaacgtcgttggtgtataggtatgttgaactagacgtgtctaacgtggaccatatcgagattcagaaggatagtaacgttcagatactggacgcgttctcttttcctagctcgaaacgaacctttaacacggattctgtggtgaaagaaatggttaatgatagacaaagagggcaaattatgtttgatttgaaacttgaggtactacttatggttaagtctaatgtttttcataaatcagagaaaatgcgtttgttttgtgaaagagtacattagattttaagatagtacttctaatattccacatggaatggtaataaacatgaatgtgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="153555" stop="154979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="153855" g_stop="154679" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="824" r_length="824" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E547745" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="153855" e_stop="154679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTTCTATAATTTTTCTTAATAGAATAGATTAGAAGAATTCATAGGGGATTTAGT-AAGAAAAA-AATTAAATTAATGGAAAAGGAAGAAGATAAACCAGTTTTGGGATATCAAAAATCAGAATATTCTTATCAAACAAATCCTCAATTTTACCAATCAGACCCTCAATTTTATCAATATTACGAATATAATTACCCTGCAAGGCCACTACCTTATGTCTCCCCTGATGTAGATCAGGGGTTCTCATTTGGTAGAGTCATGCTTTGCCTAGTGGTATTTTTATTTTTATTTGCGATGATTATAAGTATGTTAACTATGATGATATTTATGACAATGAAACCTACATTTAATTTGGAATCGTTCGAGGTCCGCGCATTCAACTTATCAGGAAATGGCGGACCTGGAACGACGTTGAAAGCTAGTTGGGAGACGAAAGTATCGGTTAAAAATACAAACACTAGGTCATCAATACTTTTGAATCAAGTTGAAACATCGTTGGTGTATAGATATGTTGAACTAGACGTGTCTAACGTGGACCATATCGAGATTCAGAAGGATAGTAACGTTCAGATACTGGATGTGTTCTCTTTTCCTAGCTCGAAACGAACCTTTAACACGGAATCTGTGGTGAAAGAAATGGTTAATGATAGACAAAGAGGGCAAATTATGTTTGATTTGAAACTTGAGGTACTACTTATGGTTAAGTCTAATGTTTTTCATAAATCAGAGAAAATGCGTTTGTTTTGCGAAAGAATTACATTAGATTTTAAGAATAGTACTTCTAATATTCCAACATGGAATGGTAATAAACAAGAATGTGCATC</genome_strand>
        <mrna_strand>TATTCTTCTATAATTTTTCTTAATAAAATAGATTAGAAGAATTCATAGGGGATTTAGTAAAAAAAAATAATTAAATTAATGGGAAAGGAAGAAGAAAAACCAGTTTTGGGATATCAAAAATCAGAATATTCTTATCAAACAAATCCTCAATTTTACCAATCAGACCCTCAATTTTATCAATATTATGAATATAATTACCCTGCAAGGCCCCTACCTTATGTCTCCCCTGATGTAGATCAAGGGTTTTCATTTGGCAGAGTCATGGTCTGCCTAATGGTATTTTTATTTTTATTTGCAATGATTATAAGTATGTTTACTATGATGATATTTATGACAATGAAACCTATATTTAATTTGGAATCGTTCGAGGTCCGCGCATTCAATTTATCAGGAAATGGCGGACCTGGAACAACGTTGAAGGCTAGTTGGGAGACGAAAGTATCGGTTAAAAATATAAATACTAGGTCGTCAGTGCTTTTGAATCAAGTTGAAACGTCGTTGGTGTATAGGTATGTTGAACTAGACGTGTCTAACGTGGACCATATCGAGATTCAGAAGGATAGTAACGTTCAGATACTGGACGCGTTCTCTTTTCCTAGCTCGAAACGAACCTTTAACACGGATTCTGTGGTGAAAGAAATGGTTAATGATAGACAAAGAGGGCAAATTATGTTTGATTTGAAACTTGAGGTACTACTTATGGTTAAGTCTAATGTTTTTCATAAATCAGAGAAAATGCGTTTGTTTTGTGAAAG-AGTACATTAGATTTTAAG-ATAGTACTTCTAATATTCC-ACATGGAATGGTAATAAACATGAATGTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364691" ref_strand="+" ref_description="SGN-E364691 [cLPP-18-F8]">
      <seq>attcttctataatttttcttaataaaatagattagaagaattcataggggatttagtaaaaaaaaataattaaattaatgggaaaggaagaagaaaaaccagttttgggatatcaaaaatcagaatattcttatcaaacaaatcctcaattttaccaatcagaccctcaattttatcaatattatgaatataattaccctgcaaggcccctaccttatgtctcccctgatgtagatcaagggttttcatttggcagagtcatggtctgcctaatggtatttttatttttatttgcaatgattataagtatgtttactatgatgatatttatgacaatgaaacctatatttaatttggaatcgttcgaggtccgcgcattcaatttatcaggaaatggcggacctggaacaacgttgaaggctagttgggagacgaaagtatcggttaaaaatataaatactaggtcgtcagtgcttttgaatcaagttgaaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="153557" stop="154648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="153856" g_stop="154348" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E364691" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="153856" e_stop="154348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCTATAATTTTTCTTAATAGAATAGATTAGAAGAATTCATAGGGGATTTAGT-AAGAAAAA-AATTAAATTAATGGAAAAGGAAGAAGATAAACCAGTTTTGGGATATCAAAAATCAGAATATTCTTATCAAACAAATCCTCAATTTTACCAATCAGACCCTCAATTTTATCAATATTACGAATATAATTACCCTGCAAGGCCACTACCTTATGTCTCCCCTGATGTAGATCAGGGGTTCTCATTTGGTAGAGTCATGCTTTGCCTAGTGGTATTTTTATTTTTATTTGCGATGATTATAAGTATGTTAACTATGATGATATTTATGACAATGAAACCTACATTTAATTTGGAATCGTTCGAGGTCCGCGCATTCAACTTATCAGGAAATGGCGGACCTGGAACGACGTTGAAAGCTAGTTGGGAGACGAAAGTATCGGTTAAAAATACAAACACTAGGTCATCAATACTTTTGAATCAAGTTGAAACAT</genome_strand>
        <mrna_strand>ATTCTTCTATAATTTTTCTTAATAAAATAGATTAGAAGAATTCATAGGGGATTTAGTAAAAAAAAATAATTAAATTAATGGGAAAGGAAGAAGAAAAACCAGTTTTGGGATATCAAAAATCAGAATATTCTTATCAAACAAATCCTCAATTTTACCAATCAGACCCTCAATTTTATCAATATTATGAATATAATTACCCTGCAAGGCCCCTACCTTATGTCTCCCCTGATGTAGATCAAGGGTTTTCATTTGGCAGAGTCATGGTCTGCCTAATGGTATTTTTATTTTTATTTGCAATGATTATAAGTATGTTTACTATGATGATATTTATGACAATGAAACCTATATTTAATTTGGAATCGTTCGAGGTCCGCGCATTCAATTTATCAGGAAATGGCGGACCTGGAACAACGTTGAAGGCTAGTTGGGAGACGAAAGTATCGGTTAAAAATATAAATACTAGGTCGTCAGTGCTTTTGAATCAAGTTGAAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549586" ref_strand="+" ref_description="SGN-E549586 [TUS-71-M14](-)">
      <seq>tttatcaatattatgaatataatacccctgcaaggcccctaccttatgtctcccctgatgtagatcaagggttttcatttggcagagtcatggtctgcctaatggtatttttatttttatttgcaatgattataagtatgtttactatgatgatatttatgacaatgaaacctatatttaatttggaatcgttcgaggtccgcgcattcaatttatcaggaaatggcggacctggaacaacgttgaaggctagttgggagacgaaagtatcggttaaaaatataaatactaggtcgtcagtgcttttgaatcaagttgaaacgtcgttggtgtataggtatgttgaactagacgtgtctaacgtggaccatatcgagattcagaaggatagtaacgttcagatactggacgcgttctcttttcctagctcgaaacgaacctttaacacggattctgtggtgaaagaaatggttaatgatagacaaagagggcaaattatgtttgatttgaaacttgaggtactacttatggttaagtctaatgtttttcataaatcagagaaaatgcgtttgttttgtgaaagaattacattagattttaagaatagtacttctaatattccaacatggaatggtaataaacatgaatgtgcatcaagtttttgatttttttgatgtaattatactgtaagaaaataaattttattgcataggtaagaaattaagttgaagttagaatgttttattatgttatgttttcttgtacaaacccaattaactcatgataaaatgttgtgtttgtgttatcttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="153725" stop="155137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154025" g_stop="154833" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="813" polyA_stop="824"/>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="SGN-E549586" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154025" e_stop="154833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCAATATTACGAATATAATTACCCTGCAAGGCCACTACCTTATGTCTCCCCTGATGTAGATCAGGGGTTCTCATTTGGTAGAGTCATGCTTTGCCTAGTGGTATTTTTATTTTTATTTGCGATGATTATAAGTATGTTAACTATGATGATATTTATGACAATGAAACCTACATTTAATTTGGAATCGTTCGAGGTCCGCGCATTCAACTTATCAGGAAATGGCGGACCTGGAACGACGTTGAAAGCTAGTTGGGAGACGAAAGTATCGGTTAAAAATACAAACACTAGGTCATCAATACTTTTGAATCAAGTTGAAACATCGTTGGTGTATAGATATGTTGAACTAGACGTGTCTAACGTGGACCATATCGAGATTCAGAAGGATAGTAACGTTCAGATACTGGATGTGTTCTCTTTTCCTAGCTCGAAACGAACCTTTAACACGGAATCTGTGGTGAAAGAAATGGTTAATGATAGACAAAGAGGGCAAATTATGTTTGATTTGAAACTTGAGGTACTACTTATGGTTAAGTCTAATGTTTTTCATAAATCAGAGAAAATGCGTTTGTTTTGCGAAAGAATTACATTAGATTTTAAGAATAGTACTTCTAATATTCCAACATGGAATGGTAATAAACAAGAATGTGCATCAAGTTTTTGA-TTTTTTGATGTAATTATACTGTAAGAAAATAAATTTTATTATGTAGGTAAGAAATTAAGTTGAAGTTCGAATGTTTTATTATGTTATGTTTTCTTGTGCAAA-CC-ATTAACTCATGATAAAATGTCGTGTTTGTGTTATCTTTTT</genome_strand>
        <mrna_strand>TTTATCAATATTATGAATATAATACCCCTGCAAGGCCCCTACCTTATGTCTCCCCTGATGTAGATCAAGGGTTTTCATTTGGCAGAGTCATGGTCTGCCTAATGGTATTTTTATTTTTATTTGCAATGATTATAAGTATGTTTACTATGATGATATTTATGACAATGAAACCTATATTTAATTTGGAATCGTTCGAGGTCCGCGCATTCAATTTATCAGGAAATGGCGGACCTGGAACAACGTTGAAGGCTAGTTGGGAGACGAAAGTATCGGTTAAAAATATAAATACTAGGTCGTCAGTGCTTTTGAATCAAGTTGAAACGTCGTTGGTGTATAGGTATGTTGAACTAGACGTGTCTAACGTGGACCATATCGAGATTCAGAAGGATAGTAACGTTCAGATACTGGACGCGTTCTCTTTTCCTAGCTCGAAACGAACCTTTAACACGGATTCTGTGGTGAAAGAAATGGTTAATGATAGACAAAGAGGGCAAATTATGTTTGATTTGAAACTTGAGGTACTACTTATGGTTAAGTCTAATGTTTTTCATAAATCAGAGAAAATGCGTTTGTTTTGTGAAAGAATTACATTAGATTTTAAGAATAGTACTTCTAATATTCCAACATGGAATGGTAATAAACATGAATGTGCATCAAGTTTTTGATTTTTTTGATGTAATTATACTGTAAGAAAATAAATTTTATTGCATAGGTAAGAAATTAAGTTGAAGTTAGAATGTTTTATTATGTTATGTTTTCTTGTACAAACCCAATTAACTCATGATAAAATGTTGTGTTTGTGTTATCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>141</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9269" PGL_stop="8273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9269" e_stop="8273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="9269" e_stop="8273" e_length="997"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9269" stop="8653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9266" stop="8458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9263" stop="8395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9263" stop="8425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9263" stop="8438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9263" stop="8468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9263" stop="8521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9245" stop="8623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9231" stop="8641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9231" stop="8647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9231" stop="8806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9172" stop="8617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8900" stop="8273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACACAAACAACTTTTTTTTCTCTCCTCCCTCGACCATCACAACTATCACCACCACCATCACCGACATGTCGGATAAAAAGTGTAGCCACCACAAGAGCAAGAAGAAAAAGCTAATTCGACGTATTTGTGCTGGAGTTCTTATCTTCCTCTTCTTAGCTCTTCTCACTATCCTCATAGTATGGGCCGTACTTCACCCCAAAAAACCTCGTTTCATTCTCCAAGACACAACTATCTTTACCTTCAACGTATCCGCCCCAAACATCTTCTCGACCTCTATCCAAACCACAATATACGCTCGAAACCCTAATAGCAAAATCGGAATTTATTATGATAGCATGCATGTATACGCTACGTATCATAATCAACAAATCACGTATTACACGCAAATACCCCAGGTGTATCAAGGCCATAAGGATGTTAACATATGGTCCCCGTTTGTTTATGGGAATAACATCCCGATCGCTCCGTATAACGGGCCGGGCCTGTCAGAGGATCAACAAAACGGTGGCGTTTGGTTGGATTTTAAGATTGATGGACGGGTAAAATGGAAAGTGGGGTCCATAACAACGGGCCATTACCATCTGCATGTCACGTGCTCTGCTTACGTGCCACTTGGTGATCGGCCCGGTTACGGAGGGGTTATGGTTGGAAATAACGCCGTTAAGTATCAACTAGCCCGGGATTGCTCCGTCAGTGTTTGAAATAACGACCGTCAAGTTTGTCTTGATCAATTCTCTTTTCTTATTTAAAATAAATGTTTTGTTCCTTTATAGTTGATGAAATTGTATATTTTTCTTATAAAAAAATATTTAAAATTGGGAAGGGAAAAAAATGGGGAATTCATAATCTTGTTATTACAGGTTATAATTTATTATATATCATTATATTATTGTTTTTTTTTTATAACAATAATATATTTAATGCGATCTCAGTAGTATGTTAATCTTATTTCTATATTTTTATAGAATAATAAAACTGTTTTTTATAGATACTCA</gDNA_template>
            <first_frame> L  H  K  Q  L  F  F  L  S  S  L  D  H  H  N  Y  H  H  H  H  H  R  H  V  G  *  K  V  *  P  P  Q  E  Q  E  E  K  A  N  S  T  Y  L  C  W  S  S  Y  L  P  L  L  S  S  S  H  Y  P  H  S  M  G  R  T  S  P  Q  K  T  S  F  H  S  P  R  H  N  Y  L  Y  L  Q  R  I  R  P  K  H  L  L  D  L  Y  P  N  H  N  I  R  S  K  P  *  *  Q  N  R  N  L  L  *  *  H  A  C  I  R  Y  V  S  *  S  T  N  H  V  L  H  A  N  T  P  G  V  S  R  P  *  G  C  *  H  M  V  P  V  C  L  W  E  *  H  P  D  R  S  V  *  R  A  G  P  V  R  G  S  T  K  R  W  R  L  V  G  F  *  D  *  W  T  G  K  M  E  S  G  V  H  N  N  G  P  L  P  S  A  C  H  V  L  C  L  R  A  T  W  *  S  A  R  L  R  R  G  Y  G  W  K  *  R  R  *  V  S  T  S  P  G  L  L  R  Q  C  L  K  *  R  P  S  S  L  S  *  S  I  L  F  S  Y  L  K  *  M  F  C  S  F  I  V  D  E  I  V  Y  F  S  Y  K  K  I  F  K  I  G  K  G  K  K  W  G  I  H  N  L  V  I  T  G  Y  N  L  L  Y  I  I  I  L  L  F  F  F  Y  N  N  N  I  F  N  A  I  S  V  V  C  *  S  Y  F  Y  I  F  I  E  *  *  N  C  F  L  *  I  L  </first_frame>
            <second_frame>  Y  T  N  N  F  F  F  S  P  P  S  T  I  T  T  I  T  T  T  I  T  D  M  S  D  K  K  C  S  H  H  K  S  K  K  K  K  L  I  R  R  I  C  A  G  V  L  I  F  L  F  L  A  L  L  T  I  L  I  V  W  A  V  L  H  P  K  K  P  R  F  I  L  Q  D  T  T  I  F  T  F  N  V  S  A  P  N  I  F  S  T  S  I  Q  T  T  I  Y  A  R  N  P  N  S  K  I  G  I  Y  Y  D  S  M  H  V  Y  A  T  Y  H  N  Q  Q  I  T  Y  Y  T  Q  I  P  Q  V  Y  Q  G  H  K  D  V  N  I  W  S  P  F  V  Y  G  N  N  I  P  I  A  P  Y  N  G  P  G  L  S  E  D  Q  Q  N  G  G  V  W  L  D  F  K  I  D  G  R  V  K  W  K  V  G  S  I  T  T  G  H  Y  H  L  H  V  T  C  S  A  Y  V  P  L  G  D  R  P  G  Y  G  G  V  M  V  G  N  N  A  V  K  Y  Q  L  A  R  D  C  S  V  S  V  *  N  N  D  R  Q  V  C  L  D  Q  F  S  F  L  I  *  N  K  C  F  V  P  L  *  L  M  K  L  Y  I  F  L  I  K  K  Y  L  K  L  G  R  E  K  N  G  E  F  I  I  L  L  L  Q  V  I  I  Y  Y  I  S  L  Y  Y  C  F  F  F  I  T  I  I  Y  L  M  R  S  Q  *  Y  V  N  L  I  S  I  F  L  *  N  N  K  T  V  F  Y  R  Y  S </second_frame>
            <third_frame>   T  Q  T  T  F  F  S  L  L  P  R  P  S  Q  L  S  P  P  P  S  P  T  C  R  I  K  S  V  A  T  T  R  A  R  R  K  S  *  F  D  V  F  V  L  E  F  L  S  S  S  S  *  L  F  S  L  S  S  *  Y  G  P  Y  F  T  P  K  N  L  V  S  F  S  K  T  Q  L  S  L  P  S  T  Y  P  P  Q  T  S  S  R  P  L  S  K  P  Q  Y  T  L  E  T  L  I  A  K  S  E  F  I  M  I  A  C  M  Y  T  L  R  I  I  I  N  K  S  R  I  T  R  K  Y  P  R  C  I  K  A  I  R  M  L  T  Y  G  P  R  L  F  M  G  I  T  S  R  S  L  R  I  T  G  R  A  C  Q  R  I  N  K  T  V  A  F  G  W  I  L  R  L  M  D  G  *  N  G  K  W  G  P  *  Q  R  A  I  T  I  C  M  S  R  A  L  L  T  C  H  L  V  I  G  P  V  T  E  G  L  W  L  E  I  T  P  L  S  I  N  *  P  G  I  A  P  S  V  F  E  I  T  T  V  K  F  V  L  I  N  S  L  F  L  F  K  I  N  V  L  F  L  Y  S  *  *  N  C  I  F  F  L  *  K  N  I  *  N  W  E  G  K  K  M  G  N  S  *  S  C  Y  Y  R  L  *  F  I  I  Y  H  Y  I  I  V  F  F  L  *  Q  *  Y  I  *  C  D  L  S  S  M  L  I  L  F  L  Y  F  Y  R  I  I  K  L  F  F  I  D  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9268" stop="8567"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTNNFFFSPPSTITTITTTITDMSDKKCSHHKSKKKKLIRRICAGVLIFLFLALLTILIVWAVLHPKKPRFILQDTTIFTFNVSAPNIFSTSIQTTIYARNPNSKIGIYYDSMHVYATYHNQQITYYTQIPQVYQGHKDVNIWSPFVYGNNIPIAPYNGPGLSEDQQNGGVWLDFKIDGRVKWKVGSITTGHYHLHVTCSAYVPLGDRPGYGGVMVGNNAVKYQLARDCSVSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8458" PGL_stop="9326"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8458" e_stop="9326"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="8458" e_stop="9326" e_length="869"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8458" stop="9157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8557" stop="9326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATTTTTTTATAAGAAAAATATACAATTTCATCAACTATAAAGGAACAAAACATTTATTTTAAATAAGAAAAGAGAATTGATCAAGACAAACTTGACGGTCGTTATTTCAAACACTGACGGAGCAATCCCGGGCTAGTTGATACTTAACGGCGTTATTTCCAACCATAACCCCTCCGTAACCGGGCCGATCACCAAGTGGCACGTAAGCAGAGCACGTGACATGCAGATGGTAATGGCCCGTTGTTATGGACCCCACTTTCCATTTTACCCGTCCATCAATCTTAAAATCCAACCAAACGCCACCGTTTTGTTGATCCTCTGACAGGCCCGGCCCGTTATACGGAGCGATCGGGATGTTATTCCCATAAACAAACGGGGACCATATGTTAACATCCTTATGGCCTTGATACACCTGGGGTATTTGCGTGTAATACGTGATTTGTTGATTATGATACGTAGCGTATACATGCATGCTATCATAATAAATTCCGATTTTGCTATTAGGGTTTCGAGCGTATATTGTGGTTTGGATAGAGGTCGAGAAGATGTTTGGGGCGGATACGTTGAAGGTAAAGATAGTTGTGTCTTGGAGAATGAAACGAGGTTTTTTGGGGTGAAGTACGGCCCATACTATGAGGATAGTGAGAAGAGCTAAGAAGAGGAAGATAAGAACTCCAGCACAAATACGTCGAATTAGCTTTTTCTTCTTGCTCTTGTGGTGGCTACACTTTTTATCCGACATGTCGGTGATGGTGGTGGTGATAGTTGTGATGGTCGAGGGAGGAGAGAAAAAAAAGTTGTTTGTGTAGGAGAAATGAGAAGGGAGGGGAGATGGGAAATGATTGACTATATATATATAGAGAGAG</gDNA_template>
            <first_frame> N  I  F  L  *  E  K  Y  T  I  S  S  T  I  K  E  Q  N  I  Y  F  K  *  E  K  R  I  D  Q  D  K  L  D  G  R  Y  F  K  H  *  R  S  N  P  G  L  V  D  T  *  R  R  Y  F  Q  P  *  P  L  R  N  R  A  D  H  Q  V  A  R  K  Q  S  T  *  H  A  D  G  N  G  P  L  L  W  T  P  L  S  I  L  P  V  H  Q  S  *  N  P  T  K  R  H  R  F  V  D  P  L  T  G  P  A  R  Y  T  E  R  S  G  C  Y  S  H  K  Q  T  G  T  I  C  *  H  P  Y  G  L  D  T  P  G  V  F  A  C  N  T  *  F  V  D  Y  D  T  *  R  I  H  A  C  Y  H  N  K  F  R  F  C  Y  *  G  F  E  R  I  L  W  F  G  *  R  S  R  R  C  L  G  R  I  R  *  R  *  R  *  L  C  L  G  E  *  N  E  V  F  W  G  E  V  R  P  I  L  *  G  *  *  E  E  L  R  R  G  R  *  E  L  Q  H  K  Y  V  E  L  A  F  S  S  C  S  C  G  G  Y  T  F  Y  P  T  C  R  *  W  W  W  *  *  L  *  W  S  R  E  E  R  K  K  S  C  L  C  R  R  N  E  K  G  G  E  M  G  N  D  *  L  Y  I  Y  R  E   </first_frame>
            <second_frame>  I  F  F  Y  K  K  N  I  Q  F  H  Q  L  *  R  N  K  T  F  I  L  N  K  K  R  E  L  I  K  T  N  L  T  V  V  I  S  N  T  D  G  A  I  P  G  *  L  I  L  N  G  V  I  S  N  H  N  P  S  V  T  G  P  I  T  K  W  H  V  S  R  A  R  D  M  Q  M  V  M  A  R  C  Y  G  P  H  F  P  F  Y  P  S  I  N  L  K  I  Q  P  N  A  T  V  L  L  I  L  *  Q  A  R  P  V  I  R  S  D  R  D  V  I  P  I  N  K  R  G  P  Y  V  N  I  L  M  A  L  I  H  L  G  Y  L  R  V  I  R  D  L  L  I  M  I  R  S  V  Y  M  H  A  I  I  I  N  S  D  F  A  I  R  V  S  S  V  Y  C  G  L  D  R  G  R  E  D  V  W  G  G  Y  V  E  G  K  D  S  C  V  L  E  N  E  T  R  F  F  G  V  K  Y  G  P  Y  Y  E  D  S  E  K  S  *  E  E  E  D  K  N  S  S  T  N  T  S  N  *  L  F  L  L  A  L  V  V  A  T  L  F  I  R  H  V  G  D  G  G  G  D  S  C  D  G  R  G  R  R  E  K  K  V  V  C  V  G  E  M  R  R  E  G  R  W  E  M  I  D  Y  I  Y  I  E  R  </second_frame>
            <third_frame>   Y  F  F  I  R  K  I  Y  N  F  I  N  Y  K  G  T  K  H  L  F  *  I  R  K  E  N  *  S  R  Q  T  *  R  S  L  F  Q  T  L  T  E  Q  S  R  A  S  *  Y  L  T  A  L  F  P  T  I  T  P  P  *  P  G  R  S  P  S  G  T  *  A  E  H  V  T  C  R  W  *  W  P  V  V  M  D  P  T  F  H  F  T  R  P  S  I  L  K  S  N  Q  T  P  P  F  C  *  S  S  D  R  P  G  P  L  Y  G  A  I  G  M  L  F  P  *  T  N  G  D  H  M  L  T  S  L  W  P  *  Y  T  W  G  I  C  V  *  Y  V  I  C  *  L  *  Y  V  A  Y  T  C  M  L  S  *  *  I  P  I  L  L  L  G  F  R  A  Y  I  V  V  W  I  E  V  E  K  M  F  G  A  D  T  L  K  V  K  I  V  V  S  W  R  M  K  R  G  F  L  G  *  S  T  A  H  T  M  R  I  V  R  R  A  K  K  R  K  I  R  T  P  A  Q  I  R  R  I  S  F  F  F  L  L  L  W  W  L  H  F  L  S  D  M  S  V  M  V  V  V  I  V  V  M  V  E  G  G  E  K  K  K  L  F  V  *  E  K  *  E  G  R  G  D  G  K  *  L  T  I  Y  I  *  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8783" stop="9115"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QARPVIRSDRDVIPINKRGPYVNILMALIHLGYLRVIRDLLIMIRSVYMHAIIINSDFAIRVSSVYCGLDRGREDVWGGYVEGKDSCVLENETRFFGVKYGPYYEDSEKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18575" PGL_stop="17459"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18575" e_stop="18097"/>
            <exon e_start="18027" e_stop="17459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="18575" e_stop="18097" e_length="479"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18096" i_stop="18028" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="18027" e_stop="17459" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18575" stop="18097"/>
              <exon start="18027" stop="17783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17940" stop="17701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17939" stop="17459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCTTCAGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAACGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTTATAATGAGGCCTTGGTATAAAAGAAGGTGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAAAGGGAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGATCGGGTGTCACGAACCGACACGTAGA : TATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGAATCGGGTGTCACGAACCGACACGTAGATTTAGGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGAGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATAATATCTACTAAGTACCCGTGTTTTGTATTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCACTACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  T  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  I  L  I  S  L  F  I  M  R  P  W  Y  K  R  R  C  D  E  L  K  *  W  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  R  E  N  *  W  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  Q  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  R  F  R  R  S  G  V  T  N  R  H  V  D :   I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  R  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  I  I  S  T  K  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  I  G  S  S  G  *  A  N  A  S  S  L  D  </first_frame>
            <second_frame>  N  L  Q  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  R  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  L  C  L  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  G  I  D  D  A  L  V  R  K  K  A  *  *  I  D  K  G  R  I  S  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  K  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *   : I  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  E  S  G  V  T  N  R  H  V  D  L  G  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  T  T  S  D  L  Q  G  E  L  M  L  L  A  W  T </second_frame>
            <third_frame>   I  F  S  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  Y  N  E  A  L  V  *  K  K  V  *  *  T  K  I  M  G  L  M  M  P  W  *  E  R  R  L  D  E  L  I  K  G  E  L  V  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  I  *  E  I  G  C  H  E  P  T  R  R  :  Y  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  N  R  V  S  R  T  D  T  *  I  *  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  E  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  N  I  Y  *  V  P  V  F  C  I  D  P  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  H  R  I  F  R  V  S  *  C  F  *  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17675" stop="17481"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPIISTKYPCFVLTPTFMFSSCLIVECSKRAVIFDSTVTLASLHYIGSSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19851" PGL_stop="20027"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19851" e_stop="20027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="19851" e_stop="20027" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19851" stop="20027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGTTATCCCAATGTCCTCCAAATTCTATCACACATGCACGAAGCATATCCTCCAATACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  C  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  V  L  Q  I  L  S  H  M  H  E  A  Y  P  P  I  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  F  R  *  G  *  E  V  I  P  M  S  S  K  F  Y  H  T  C  T  K  H  I  L  Q  Y  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21332" PGL_stop="23971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21332" e_stop="23971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="21332" e_stop="23971" e_length="2640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21332" stop="22044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21332" stop="21927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21332" stop="21857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21403" stop="22082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21403" stop="21761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21852" stop="22510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21921" stop="22682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21921" stop="22581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22148" stop="22690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22324" stop="22654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22531" stop="23089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22615" stop="23404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22617" stop="23150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22691" stop="23388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23252" stop="23971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23255" stop="23918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAAGCGGCGATAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAAAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGTAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTAGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACACTCGGAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGCACTGGTTTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTGAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCCATCACCCCGGTCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAATCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTAGTTGCCATGGTGAAGTCATCTGGCTTTACTCCTTCTACCTCTATCACGAAGTCTACCACTTCTTGAAAAGATTTCGTTGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCCTATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACTGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTTATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCGGAGTCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGCCTAACCTTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATTTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGCTCATATTCCCCATCCTCCCCTTCTCTTATTACTTCCTTAGTCGGTGGAGGAGTCACCGTCCTAGCATCAGATGGGCT</gDNA_template>
            <first_frame> E  S  L  D  K  A  A  I  V  T  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  *  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  V  I  N  E  Y  D  H  K  K  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  C  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  S  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  *  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  A  H  S  E  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  K  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  *  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  I  P  F  T  N  H  F  L  S  T  K  K  R  D  D  T  H  W  F  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  S  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  L  R  S  P  R  E  S  I  T  M  G  P  F  V  C  L  S  V  A  P  T  M  L  *  C  S  G  S  N  F  P  I  T  P  V  I  L  V  T  T  I  T  S  T  T  M  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  R  I  K  H  R  P  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  K  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  S  C  H  G  E  V  I  W  L  Y  S  F  Y  L  Y  H  E  V  Y  H  F  L  K  R  F  R  C  S  C  Y  L  *  G  *  N  P  Q  L  *  S  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  L  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  L  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  R  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  F  W  G  R  L  G  W  Q  S  L  I  L  H  L  L  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  R  P  S  I  R  W  A </first_frame>
            <second_frame>  N  P  L  T  K  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  M  S  S  M  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  V  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  M  H  T  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  R  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  Y  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  E  I  T  K  S  T  *  V  F  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  V  S  A  S  D  L  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  I  F  P  S  P  R  S  F  W  *  P  P  L  P  R  P  P  C  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  N  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  V  A  M  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  *  K  D  F  V  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  C  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  L  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  A  V  A  A  C  C  T  S  G  V  *  G  A  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  Y  S  P  S  S  P  S  L  I  T  S  L  V  G  G  G  V  T  V  L  A  S  D  G   </second_frame>
            <third_frame>   I  P  *  Q  S  G  D  S  N  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  L  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  C  H  Q  *  I  R  S  Q  K  D  P  N  M  A  *  K  S  R  S  S  N  S  *  M  *  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  *  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  L  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  C  T  L  G  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  P  P  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  K  R  *  Y  A  L  V  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  F  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  S  P  P  P  I  S  Q  G  K  H  N  N  G  P  F  R  L  F  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  S  H  H  P  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  V  W  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  N  Q  A  *  A  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  *  L  P  W  *  S  H  L  A  L  L  L  L  P  L  S  R  S  L  P  L  L  E  K  I  S  L  *  L  L  P  V  R  L  K  S  A  T  L  I  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  P  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  Y  V  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  Q  *  P  H  V  V  P  P  E  S  E  V  L  V  Q  K  T  L  E  V  P  N  L  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  F  L  G  *  V  G  V  A  I  P  H  S  A  L  A  H  I  P  H  P  P  L  L  L  L  L  P  *  S  V  E  E  S  P  S  *  H  Q  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23564" stop="23971"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDWRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSRSSRMLYLRSLRCWCRKHWRCLTLIRQPTKISENLIDHFWGRLGWQSLILHLLIFPILPFSYYFLSRWRSHRPSIRWA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23181" stop="23462"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFVVAATCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDSARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22763" stop="23017"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSNFPITPVILVTTITSTTMSSRITASTMTTSTSSYWGSITLFGTIPPNMSSLPTSITLSRIKHRPLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22059" stop="22304"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSARNTSRNSRTTETDSIEGTWVVSSLRCAKKAKYPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21596" stop="21802"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYVINEYDHKKIQIWLKNPVHQTHECSRGIRKTKRHHYKFVMPIPSSKSSLWHIRCPYFQLMITGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="23348" PGL_stop="21904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23348" e_stop="23176"/>
            <exon e_start="22431" e_stop="21904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.174" e_score="0.925"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="23348" e_stop="23176" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.174">
            <gDNA_intron_boundary i_start="23175" i_stop="22432" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="22431" e_stop="21904" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23348" stop="23176"/>
              <exon start="22431" stop="21904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATAGGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACAACGAAATCTTTTCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAAACCAGTGCGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTTCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTCCGAGTGTGCATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  G  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  S  Y  N  E  I  F  S  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  T  S  A  Y  H  L  F  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  G  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  P  S  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  *  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  T  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  K  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  Y  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  L  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  V  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  R  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  Q  L  Q  R  N  L  F  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  N  Q  C  V  S  S  L  F  F  V  L  R  K  W  L  V  K  G  I  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  Q  L  S  R  F  R  W  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  S  E  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23290" stop="23176"/>
                    <exon start="22431" stop="21905"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATQLCFSPQERIRRFVKGLRSELRISALQVAATTKSFQEMVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSKPVRIISFLRAKKMVSKGYLAFLAHLKDDTTQVPSIESVSVVREFLDVFLADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRVCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="23975" PGL_stop="23422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23975" e_stop="23422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="23975" e_stop="23422" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23975" stop="23422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATGCTAGGACGGTGACTCCTCCACCGACTAAGGAAGTAATAAGAGAAGGGGAGGATGGGGAATATGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAAGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  C  *  D  G  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  I  *  A  S  A  E  *  G  I  A  T  P  T  Y  P  R  N  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  R  L  G  T  S  S  V  F  C  T  S  T  S  D  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  T  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  A  R  T  V  T  P  P  P  T  K  E  V  I  R  E  G  E  D  G  E  Y  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  *  A  P  P  V  F  S  A  P  A  P  Q  T  P  E  V  Q  H  A  A  T  A  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  K  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  Q  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  M  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  N  M  S  K  C  R  M  R  D  C  H  P  N  L  P  Q  K  *  S  I  R  F  S  L  I  L  V  G  C  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  R  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  N  I  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  S  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23800" stop="23423"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APPVFSAPAPQTPEVQHAATAAPRMDVPLEIGTFPRLTTGPIMTNDQHKLFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEQFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="24801" PGL_stop="25139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24801" e_stop="25139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="24801" e_stop="25139" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24801" stop="25139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCTCTCAATATTCATTAATCCTCTTGTGTCGATATATGACACTCCGATCCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  S  Q  Y  S  L  I  L  L  C  R  Y  M  T  L  R  S  P  *  I  Y  V  S  V  R  D  T  R  S </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  D  I  *  H  S  D  P  P  K  S  T  C  R  F  V  T  P  D   </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  L  S  I  F  I  N  P  L  V  S  I  Y  D  T  P  I  P  L  N  L  R  V  G  S  *  H  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="26233" PGL_stop="25255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26233" e_stop="25255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="26233" e_stop="25255" e_length="979"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26233" stop="25575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25659" stop="25255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACAGGCTGGGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGTGATGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCTGTCACAGACTGCGTAATCCTAGTCTGGATCGGATTTCCTTATGCGTTTTAAGGGGCGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAACACAAAGCTTGGGAAATTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAACGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTTATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAGGGAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGAATCGGGTGTCACGAACCGATACG</gDNA_template>
            <first_frame> E  K  Q  A  G  T  T  E  P  T  T  D  R  H  E  H  D  G  P  S  R  G  L  V  S  K  H  L  E  I  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T  G  V  T  D  R  H  R  L  F  G  G  N  *  V  S  E  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  A  V  T  D  C  V  I  L  V  W  I  G  F  P  Y  A  F  *  G  A  F  L  T  I  P  A  L  I  I  K  L  V  G  *  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  A  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  V  *  I  K  K  I  E  R  T  R  E  R  E  R  K  S  N  E  K  E  D  R  T  R  G  K  N  T  K  L  G  K  L  L  A  *  S  L  I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  Y  N  E  A  L  V  *  K  K  A  *  *  T  K  I  M  G  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  E  L  V  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  I  R  E  S  G  V  T  N  R  Y  </first_frame>
            <second_frame>  K  N  R  L  G  R  R  N  P  R  R  T  V  M  S  T  T  D  R  R  G  V  S  F  Q  N  T  *  K  F  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  R  A  *  R  T  V  T  D  S  L  V  E  I  E  S  L  N  L  V  M  T  C  R  T  D  R  R  R  H  D  G  L  S  Q  T  A  *  S  *  S  G  S  D  F  L  M  R  F  K  G  R  F  *  L  F  L  L  *  L  *  S  *  W  V  N  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  K  L  I  S  G  L  L  L  P  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G  F  E  *  R  K  *  K  E  Q  E  K  E  R  E  S  R  T  R  K  R  I  E  R  E  E  K  T  Q  S  L  G  N  C  L  L  D  H  *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  T  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  I  L  I  S  L  F  I  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  W  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  R  E  N  *  W  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  E  L  G  N  R  V  S  R  T  D  T </second_frame>
            <third_frame>   K  T  G  W  D  D  G  T  H  D  G  P  S  *  A  R  R  T  V  E  G  S  R  F  K  T  L  R  N  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  G  R  D  G  P  S  Q  T  L  W  W  K  L  S  L  *  T  L  *  *  P  A  G  R  T  V  A  G  T  T  G  C  H  R  L  R  N  P  S  L  D  R  I  S  L  C  V  L  R  G  V  F  D  Y  S  C  F  N  Y  K  V  S  G  L  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E  G  L  N  K  E  N  R  K  N  K  R  K  R  E  K  V  E  R  E  R  G  S  N  E  R  K  K  H  K  A  W  E  I  A  C  L  I  T  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  R  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  L  C  L  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  G  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  G  R  I  S  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26233" stop="26039"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQAGTTEPTTDRHEHDGPSRGLVSKHLEILKLGTENRLSELRNGMAGRTVTGVTDRHRLFGGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="25722" PGL_stop="27245"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25722" e_stop="26281"/>
            <exon e_start="26570" e_stop="26594"/>
            <exon e_start="27128" e_stop="27235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.835" acc_prob="0.804" e_score="0.925"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.560"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="25722" e_stop="26281" e_length="560"/>
          </exon>
          <intron i_serial="1" don_prob="0.835" acc_prob="0.804">
            <gDNA_intron_boundary i_start="26282" i_stop="26569" i_length="288"/>
          </intron>
          <exon e_serial="2" e_score="0.560">
            <gDNA_exon_boundary e_start="26570" e_stop="26594" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26595" i_stop="27127" i_length="533"/>
          </intron>
          <exon e_serial="3" e_score="0.700">
            <gDNA_exon_boundary e_start="27128" e_stop="27235" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25722" stop="26281"/>
              <exon start="26570" stop="26594"/>
              <exon start="27128" stop="27224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25722" stop="26281"/>
              <exon start="26570" stop="26594"/>
              <exon start="27128" stop="27223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25722" stop="26281"/>
              <exon start="26570" stop="26594"/>
              <exon start="27128" stop="27217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26281"/>
              <exon start="26570" stop="26594"/>
              <exon start="27128" stop="27235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAA : ATTTTTTTTTTTTAAAAATAAATAG : TATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> F  D  F  L  S  L  S  L  V  L  S  I  F  F  I  Q  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  T  N  F  I  I  K  A  G  I  V  K  N  A  P  *  N  A  *  G  N  P  I  Q  T  R  I  T  Q  S  V  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  L  D  G  P  S  C  S  *  R  S  V  V  G  S  V  V  P  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L  H  K :   F  F  F  F  K  N  K  *  :  Y  K  L  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  S  T  F  S  L  F  L  L  F  F  L  F  S  L  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  Q  E  *  S  K  T  P  L  K  T  H  K  E  I  R  S  R  L  G  L  R  S  L  *  Q  P  V  V  P  A  T  V  R  P  A  G  H  H  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  P  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  E  F  L  S  V  L  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  G  R  Y  T   : N  F  F  F  L  K  I  N  S :   I  N  *  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   R  L  S  L  S  F  S  C  S  F  Y  F  L  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  H  *  L  Y  N  *  S  R  N  S  Q  K  R  P  L  K  R  I  R  K  S  D  P  D  *  D  Y  A  V  C  D  S  P  S  C  L  R  R  S  V  L  Q  V  I  T  R  F  R  D  S  I  S  T  K  E  S  V  T  V  R  H  A  R  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  P  R  R  S  V  V  L  M  T  V  R  R  G  F  R  R  P  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q  V  V  T  Q  :  I  F  F  F  *  K  *  I   : V  *  I  N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25723" e_stop="26277"/>
            <exon e_start="26570" e_stop="26594"/>
            <exon e_start="27087" e_stop="27225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.804" e_score="0.938"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.640"/>
          <exon-only e_score="0.588"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="25723" e_stop="26277" e_length="555"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.804">
            <gDNA_intron_boundary i_start="26278" i_stop="26569" i_length="292"/>
          </intron>
          <exon e_serial="2" e_score="0.640">
            <gDNA_exon_boundary e_start="26570" e_stop="26594" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26595" i_stop="27086" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="0.588">
            <gDNA_exon_boundary e_start="27087" e_stop="27225" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25728" stop="26277"/>
              <exon start="26570" stop="26594"/>
              <exon start="27087" stop="27225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25758" stop="26277"/>
              <exon start="26570" stop="26594"/>
              <exon start="27087" stop="27218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25773" stop="26277"/>
              <exon start="26570" stop="26594"/>
              <exon start="27087" stop="27217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25792" stop="26277"/>
              <exon start="26570" stop="26594"/>
              <exon start="27087" stop="27218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25802" stop="26277"/>
              <exon start="26570" stop="26594"/>
              <exon start="27087" stop="27218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTAC : ATTTTTTTTTTTTAAAAATAAATAG : TAAAATATATTATAAAATATAAAAAATTGAAAAAAAAAAAATATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> S  T  F  S  L  F  L  L  F  F  L  F  S  L  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  Q  E  *  S  K  T  P  L  K  T  H  K  E  I  R  S  R  L  G  L  R  S  L  *  Q  P  V  V  P  A  T  V  R  P  A  G  H  H  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  P  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  E  F  L  S  V  L  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  G  R  Y  :  I  F  F  F  *  K  *  I   : V  K  Y  I  I  K  Y  K  K  L  K  K  K  K  Y  K  L  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  R  L  S  L  S  F  S  C  S  F  Y  F  L  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  H  *  L  Y  N  *  S  R  N  S  Q  K  R  P  L  K  R  I  R  K  S  D  P  D  *  D  Y  A  V  C  D  S  P  S  C  L  R  R  S  V  L  Q  V  I  T  R  F  R  D  S  I  S  T  K  E  S  V  T  V  R  H  A  R  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  P  R  R  S  V  V  L  M  T  V  R  R  G  F  R  R  P  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q  V  V  T :   F  F  F  F  K  N  K  *  :  *  N  I  L  *  N  I  K  N  *  K  K  K  N  I  N  *  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   D  F  L  S  L  S  L  V  L  S  I  F  F  I  Q  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  T  N  F  I  I  K  A  G  I  V  K  N  A  P  *  N  A  *  G  N  P  I  Q  T  R  I  T  Q  S  V  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  L  D  G  P  S  C  S  *  R  S  V  V  G  S  V  V  P  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L   : H  F  F  F  L  K  I  N  S :   K  I  Y  Y  K  I  *  K  I  E  K  K  K  I  *  I  N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="25723" e_stop="26281"/>
            <exon e_start="27155" e_stop="27245"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.835" acc_prob="0.000" e_score="0.925"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="25723" e_stop="26281" e_length="559"/>
          </exon>
          <intron i_serial="1" don_prob="0.835" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26282" i_stop="27154" i_length="873"/>
          </intron>
          <exon e_serial="2" e_score="0.875">
            <gDNA_exon_boundary e_start="27155" e_stop="27245" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26281"/>
              <exon start="27155" stop="27245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAA : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAT</gDNA_template>
            <first_frame> S  T  F  S  L  F  L  L  F  F  L  F  S  L  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  Q  E  *  S  K  T  P  L  K  T  H  K  E  I  R  S  R  L  G  L  R  S  L  *  Q  P  V  V  P  A  T  V  R  P  A  G  H  H  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  P  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  E  F  L  S  V  L  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  G  R  Y  T   : I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K  K   </first_frame>
            <second_frame>  R  L  S  L  S  F  S  C  S  F  Y  F  L  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  H  *  L  Y  N  *  S  R  N  S  Q  K  R  P  L  K  R  I  R  K  S  D  P  D  *  D  Y  A  V  C  D  S  P  S  C  L  R  R  S  V  L  Q  V  I  T  R  F  R  D  S  I  S  T  K  E  S  V  T  V  R  H  A  R  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  P  R  R  S  V  V  L  M  T  V  R  R  G  F  R  R  P  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q  V  V  T  Q  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  K  K  </second_frame>
            <third_frame>   D  F  L  S  L  S  L  V  L  S  I  F  F  I  Q  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  T  N  F  I  I  K  A  G  I  V  K  N  A  P  *  N  A  *  G  N  P  I  Q  T  R  I  T  Q  S  V  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  L  D  G  P  S  C  S  *  R  S  V  V  G  S  V  V  P  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L  H  N :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="25722" e_stop="26281"/>
            <exon e_start="27137" e_stop="27187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.835" acc_prob="0.000" e_score="0.925"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="25722" e_stop="26281" e_length="560"/>
          </exon>
          <intron i_serial="1" don_prob="0.835" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26282" i_stop="27136" i_length="855"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27137" e_stop="27187" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25722" stop="26281"/>
              <exon start="27137" stop="27187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAA : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> F  D  F  L  S  L  S  L  V  L  S  I  F  F  I  Q  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  T  N  F  I  I  K  A  G  I  V  K  N  A  P  *  N  A  *  G  N  P  I  Q  T  R  I  T  Q  S  V  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  L  D  G  P  S  C  S  *  R  S  V  V  G  S  V  V  P  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L  H  K :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  S  T  F  S  L  F  L  L  F  F  L  F  S  L  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  Q  E  *  S  K  T  P  L  K  T  H  K  E  I  R  S  R  L  G  L  R  S  L  *  Q  P  V  V  P  A  T  V  R  P  A  G  H  H  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  P  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  E  F  L  S  V  L  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  G  R  Y  T   : N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   R  L  S  L  S  F  S  C  S  F  Y  F  L  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  H  *  L  Y  N  *  S  R  N  S  Q  K  R  P  L  K  R  I  R  K  S  D  P  D  *  D  Y  A  V  C  D  S  P  S  C  L  R  R  S  V  L  Q  V  I  T  R  F  R  D  S  I  S  T  K  E  S  V  T  V  R  H  A  R  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  P  R  R  S  V  V  L  M  T  V  R  R  G  F  R  R  P  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q  V  V  T  Q  :  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="25722" e_stop="26281"/>
            <exon e_start="27185" e_stop="27243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.835" acc_prob="0.000" e_score="0.925"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="25722" e_stop="26281" e_length="560"/>
          </exon>
          <intron i_serial="1" don_prob="0.835" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26282" i_stop="27184" i_length="903"/>
          </intron>
          <exon e_serial="2" e_score="0.833">
            <gDNA_exon_boundary e_start="27185" e_stop="27243" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25722" stop="26281"/>
              <exon start="27185" stop="27243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25723" stop="26195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGCCCCTTAAAACGCATAAGGAAATCCGATCCAGACTAGGATTACGCAGTCTGTGACAGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCATCACAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACACAA : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAA</gDNA_template>
            <first_frame> F  D  F  L  S  L  S  L  V  L  S  I  F  F  I  Q  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  T  N  F  I  I  K  A  G  I  V  K  N  A  P  *  N  A  *  G  N  P  I  Q  T  R  I  T  Q  S  V  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  L  D  G  P  S  C  S  *  R  S  V  V  G  S  V  V  P  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L  H  N :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  K  </first_frame>
            <second_frame>  S  T  F  S  L  F  L  L  F  F  L  F  S  L  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  Q  E  *  S  K  T  P  L  K  T  H  K  E  I  R  S  R  L  G  L  R  S  L  *  Q  P  V  V  P  A  T  V  R  P  A  G  H  H  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  P  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  E  F  L  S  V  L  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  G  R  Y  T   : I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K  K </second_frame>
            <third_frame>   R  L  S  L  S  F  S  C  S  F  Y  F  L  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  H  *  L  Y  N  *  S  R  N  S  Q  K  R  P  L  K  R  I  R  K  S  D  P  D  *  D  Y  A  V  C  D  S  P  S  C  L  R  R  S  V  L  Q  V  I  T  R  F  R  D  S  I  S  T  K  E  S  V  T  V  R  H  A  R  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  P  R  R  S  V  V  L  M  T  V  R  R  G  F  R  R  P  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q  V  V  T  Q  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="33589" PGL_stop="38622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33589" e_stop="33689"/>
            <exon e_start="34063" e_stop="34183"/>
            <exon e_start="34266" e_stop="34312"/>
            <exon e_start="34416" e_stop="34486"/>
            <exon e_start="34579" e_stop="34692"/>
            <exon e_start="34776" e_stop="34951"/>
            <exon e_start="35029" e_stop="35117"/>
            <exon e_start="35834" e_stop="35951"/>
            <exon e_start="36175" e_stop="36248"/>
            <exon e_start="36398" e_stop="36445"/>
            <exon e_start="36667" e_stop="36835"/>
            <exon e_start="37581" e_stop="37703"/>
            <exon e_start="38062" e_stop="38622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.733" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.967" acc_prob="0.521" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.870" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="0.964"/>
          <exon-intron don_prob="0.506" acc_prob="0.703" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33589" e_stop="33689" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33690" i_stop="34062" i_length="373"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34063" e_stop="34183" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34184" i_stop="34265" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34266" e_stop="34312" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34313" i_stop="34415" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34416" e_stop="34486" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.733">
            <gDNA_intron_boundary i_start="34487" i_stop="34578" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34579" e_stop="34692" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34693" i_stop="34775" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="34776" e_stop="34951" e_length="176"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="34952" i_stop="35028" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="35029" e_stop="35117" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="0.521">
            <gDNA_intron_boundary i_start="35118" i_stop="35833" i_length="716"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="35834" e_stop="35951" e_length="118"/>
          </exon>
          <intron i_serial="8" don_prob="0.980" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35952" i_stop="36174" i_length="223"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="36175" e_stop="36248" e_length="74"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.772">
            <gDNA_intron_boundary i_start="36249" i_stop="36397" i_length="149"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="36398" e_stop="36445" e_length="48"/>
          </exon>
          <intron i_serial="10" don_prob="0.870" acc_prob="0.866">
            <gDNA_intron_boundary i_start="36446" i_stop="36666" i_length="221"/>
          </intron>
          <exon e_serial="11" e_score="0.964">
            <gDNA_exon_boundary e_start="36667" e_stop="36835" e_length="169"/>
          </exon>
          <intron i_serial="11" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36836" i_stop="37580" i_length="745"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="37581" e_stop="37703" e_length="123"/>
          </exon>
          <intron i_serial="12" don_prob="0.506" acc_prob="0.703">
            <gDNA_intron_boundary i_start="37704" i_stop="38061" i_length="358"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="38062" e_stop="38622" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33589" stop="33689"/>
              <exon start="34063" stop="34183"/>
              <exon start="34266" stop="34312"/>
              <exon start="34416" stop="34486"/>
              <exon start="34579" stop="34692"/>
              <exon start="34776" stop="34783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33606" stop="33689"/>
              <exon start="34063" stop="34183"/>
              <exon start="34266" stop="34312"/>
              <exon start="34416" stop="34486"/>
              <exon start="34579" stop="34692"/>
              <exon start="34776" stop="34784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33629" stop="33689"/>
              <exon start="34063" stop="34183"/>
              <exon start="34266" stop="34312"/>
              <exon start="34416" stop="34486"/>
              <exon start="34579" stop="34692"/>
              <exon start="34776" stop="34896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34894" stop="34951"/>
              <exon start="35029" stop="35117"/>
              <exon start="35834" stop="35951"/>
              <exon start="36175" stop="36248"/>
              <exon start="36398" stop="36445"/>
              <exon start="36667" stop="36806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392700" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34894" stop="34951"/>
              <exon start="35029" stop="35117"/>
              <exon start="35834" stop="35951"/>
              <exon start="36175" stop="36248"/>
              <exon start="36398" stop="36445"/>
              <exon start="36667" stop="36711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392698" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36777" stop="36835"/>
              <exon start="37581" stop="37703"/>
              <exon start="38062" stop="38612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38071" stop="38622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244674" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38106" stop="38622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392699" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38407" stop="38622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228206" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTTCACTAGCTCAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAA : GTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAAT : CATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAA : GCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAAT : ATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTG : ATATTTTTGAGGTTGTAAAGGAAGATGGCACAGTTCTTGCAATGAAGTTGCACAGACTTGGTAGGGTTTCTTTTAGGGCAGTCAAATCGAAACGTGACTATTTGAGGCATCGTAGTAGCTACAATTGGCTGTACTTGTCCCGACTTGCTGCTTTGAAAGAGTTTGCTTTTATGAAG : GCACTAGAAGAACATGGATTTCCTGTTCCTCAGGCTGTGGATTGCAACCGACATTGTGTGATTATGTCACTTGTCCCAGGCTATCCACT : TGTGCAGGTTAGGGAGCTGCAAAACCCAGATGTGGTTTTTGAAACAATCATCGCTGCTGTTATTCGTTTGGCAGAACACGGGCTTATTCACTGTGATTTTAATGAATTTAACATAATG : ATTGATGATGATGAAAAGGTCACCATAATTGATTTCCCACAAATGGTGTCAGTCTCTCATCCTAACGCTCAGAT : GTACTTTGATCGTGATGTGGAGTGCATCTATAAGTTCTTTGCAAAGCG : GTACAATATGTCCTTTGATGAAAATGAAAATGATTCTGATGGTTTGGAGGTTGACATAAATGAAGTTGGTCGCCCCCAATTTTCTGAAATAAACAAGAACAGCGGTTTCTTGGACAAAGAACTTGCTGCCAGTGGTTTTACGAGAAAGGATCAAGATGAGCTTGAAAAG : TTGATTGAGGGAGAACTTGAAAATCATTCAGATTCTGACGATGAAGGAACTGCTGATGAAGAAGATGAAGAAGACATTAACAACACAAACGTCAAGCAGCTCGAATCCTTGGACTTGGCGAAG : GAAGACGTTAATCATCAAACTGGGGATGATAAGCACGACGATAACCATCAAGTTGGGGATGAAAATGATCCCGAGGAAGAGGAAGAGGCCGAGTCTGAAGATGATCCTGAACTAGAGAAAAGCCTGAGCAAGCAAAGGAAGAAGGCTATCCAGGCTGCCCATCGGGGCAAGAGGAACTTTGCCTCGAGGAATACATACAAAGACAAAGGTGGGAAATCCTCACAGAACTCAAAGGTCCATAAGCAATTGAGTGGTTGGTGAAGTATACACTATTAAAGAATATGCAATCCAGTGTCTTTGAAGGCCAATCCACGGAATTTCTTTTGCGCGAAGGTGTTGAAGAGAATATCATCATATAAACTAGCTATCGATAAGTTACTGAGTGATTCAGTTTCGACTCAGATATATACATTGTCCTAAATGTCTGTCTGGTGTATATTTAAAATTTTGGTAGCATGTTTGGCAGAACATATAGGCTCAAGATTGTTAAATGTGTATTTGTTGTTTACTAATGATTATAAATCAAGAACAGCTATGTAGTTGTGAAGAACTACTTCAGAT</gDNA_template>
            <first_frame> F  F  F  S  L  A  Q  K  P  S  I  F  R  V  I  F  F  S  N  S  V  F  L  F  L  K  F  Q  *  S  S  I  N  K :   C  *  Q  S  L  T  A  A  K  E  D  K  M  K  L  D  V  N  V  L  R  Y  L  S  K  D  D  F  R  V  L  T  A  V  E  M  G  M  R  N  :  H  E  I  V  P  C  E  L  I  D  R  I  A  R  L  K :   H  G  G  T  Y  K  V  L  K  N  L  L  K  H  K  L  V  H  H  D  S  S  K   : Y  D  G  F  R  L  T  Y  L  G  Y  D  F  L  A  I  K  T  L  V  N  R  G  M  F  N  G  V  G  R  Q  I  G  V  G  K  E  S   : D  I  F  E  V  V  K  E  D  G  T  V  L  A  M  K  L  H  R  L  G  R  V  S  F  R  A  V  K  S  K  R  D  Y  L  R  H  R  S  S  Y  N  W  L  Y  L  S  R  L  A  A  L  K  E  F  A  F  M  K  :  A  L  E  E  H  G  F  P  V  P  Q  A  V  D  C  N  R  H  C  V  I  M  S  L  V  P  G  Y  P  L :   V  Q  V  R  E  L  Q  N  P  D  V  V  F  E  T  I  I  A  A  V  I  R  L  A  E  H  G  L  I  H  C  D  F  N  E  F  N  I  M  :  I  D  D  D  E  K  V  T  I  I  D  F  P  Q  M  V  S  V  S  H  P  N  A  Q  M :   Y  F  D  R  D  V  E  C  I  Y  K  F  F  A  K  R :   Y  N  M  S  F  D  E  N  E  N  D  S  D  G  L  E  V  D  I  N  E  V  G  R  P  Q  F  S  E  I  N  K  N  S  G  F  L  D  K  E  L  A  A  S  G  F  T  R  K  D  Q  D  E  L  E  K  :  L  I  E  G  E  L  E  N  H  S  D  S  D  D  E  G  T  A  D  E  E  D  E  E  D  I  N  N  T  N  V  K  Q  L  E  S  L  D  L  A  K  :  E  D  V  N  H  Q  T  G  D  D  K  H  D  D  N  H  Q  V  G  D  E  N  D  P  E  E  E  E  E  A  E  S  E  D  D  P  E  L  E  K  S  L  S  K  Q  R  K  K  A  I  Q  A  A  H  R  G  K  R  N  F  A  S  R  N  T  Y  K  D  K  G  G  K  S  S  Q  N  S  K  V  H  K  Q  L  S  G  W  *  S  I  H  Y  *  R  I  C  N  P  V  S  L  K  A  N  P  R  N  F  F  C  A  K  V  L  K  R  I  S  S  Y  K  L  A  I  D  K  L  L  S  D  S  V  S  T  Q  I  Y  T  L  S  *  M  S  V  W  C  I  F  K  I  L  V  A  C  L  A  E  H  I  G  S  R  L  L  N  V  Y  L  L  F  T  N  D  Y  K  S  R  T  A  M  *  L  *  R  T  T  S  D </first_frame>
            <second_frame>  F  F  F  H  *  L  K  S  L  Q  F  F  E  *  F  S  S  A  T  Q  F  F  S  S  *  S  F  N  N  L  P  L  T   : S  V  S  N  H  *  Q  Q  Q  K  R  I  R  *  S  W  M  L  T  F  *  D  T  F  R  K  M  I  S  G  S  L  L  P  L  R  W  E  C  A  I :   M  R  L  C  L  V  S  S  L  T  G  L  L  A  S   : S  M  E  A  H  I  K  C  *  R  I  C  *  S  T  N  *  C  I  M  T  L  L  N  :  M  M  D  F  D  S  P  T  L  V  M  I  S  L  R  *  R  L  W  L  I  V  G  C  L  M  E  W  V  V  K  L  V  L  E  K  S  L  :  I  F  L  R  L  *  R  K  M  A  Q  F  L  Q  *  S  C  T  D  L  V  G  F  L  L  G  Q  S  N  R  N  V  T  I  *  G  I  V  V  A  T  I  G  C  T  C  P  D  L  L  L  *  K  S  L  L  L  *  R :   H  *  K  N  M  D  F  L  F  L  R  L  W  I  A  T  D  I  V  *  L  C  H  L  S  Q  A  I  H   : L  C  R  L  G  S  C  K  T  Q  M  W  F  L  K  Q  S  S  L  L  L  F  V  W  Q  N  T  G  L  F  T  V  I  L  M  N  L  T  *  * :   L  M  M  M  K  R  S  P  *  L  I  S  H  K  W  C  Q  S  L  I  L  T  L  R   : C  T  L  I  V  M  W  S  A  S  I  S  S  L  Q  S   : G  T  I  C  P  L  M  K  M  K  M  I  L  M  V  W  R  L  T  *  M  K  L  V  A  P  N  F  L  K  *  T  R  T  A  V  S  W  T  K  N  L  L  P  V  V  L  R  E  R  I  K  M  S  L  K  S :   *  L  R  E  N  L  K  I  I  Q  I  L  T  M  K  E  L  L  M  K  K  M  K  K  T  L  T  T  Q  T  S  S  S  S  N  P  W  T  W  R  R :   K  T  L  I  I  K  L  G  M  I  S  T  T  I  T  I  K  L  G  M  K  M  I  P  R  K  R  K  R  P  S  L  K  M  I  L  N  *  R  K  A  *  A  S  K  G  R  R  L  S  R  L  P  I  G  A  R  G  T  L  P  R  G  I  H  T  K  T  K  V  G  N  P  H  R  T  Q  R  S  I  S  N  *  V  V  G  E  V  Y  T  I  K  E  Y  A  I  Q  C  L  *  R  P  I  H  G  I  S  F  A  R  R  C  *  R  E  Y  H  H  I  N  *  L  S  I  S  Y  *  V  I  Q  F  R  L  R  Y  I  H  C  P  K  C  L  S  G  V  Y  L  K  F  W  *  H  V  W  Q  N  I  *  A  Q  D  C  *  M  C  I  C  C  L  L  M  I  I  N  Q  E  Q  L  C  S  C  E  E  L  L  Q   </second_frame>
            <third_frame>   F  F  F  T  S  S  K  A  F  N  F  S  S  N  F  L  Q  Q  L  S  F  S  L  L  E  V  S  I  I  F  H  *  Q  :  V  L  A  I  I  N  S  S  K  R  G  *  D  E  V  G  C  *  R  F  E  I  P  F  E  R  *  F  Q  G  P  Y  C  R  *  D  G  N  A  Q   : S  *  D  C  A  L  *  A  H  *  P  D  C  S  P  Q  :  A  W  R  H  I  *  S  V  E  E  F  A  K  A  Q  I  S  A  S  *  L  F  *  I :   *  W  I  S  T  H  L  P  W  L  *  F  P  C  D  K  D  F  G  *  S  W  D  V  *  W  S  G  S  S  N  W  C  W  K  R  V  * :   Y  F  *  G  C  K  G  R  W  H  S  S  C  N  E  V  A  Q  T  W  *  G  F  F  *  G  S  Q  I  E  T  *  L  F  E  A  S  *  *  L  Q  L  A  V  L  V  P  T  C  C  F  E  R  V  C  F  Y  E   : G  T  R  R  T  W  I  S  C  S  S  G  C  G  L  Q  P  T  L  C  D  Y  V  T  C  P  R  L  S  T  :  C  A  G  *  G  A  A  K  P  R  C  G  F  *  N  N  H  R  C  C  Y  S  F  G  R  T  R  A  Y  S  L  *  F  *  *  I  *  H  N   : D  *  *  *  *  K  G  H  H  N  *  F  P  T  N  G  V  S  L  S  S  *  R  S  D  :  V  L  *  S  *  C  G  V  H  L  *  V  L  C  K  A  :  V  Q  Y  V  L  *  *  K  *  K  *  F  *  W  F  G  G  *  H  K  *  S  W  S  P  P  I  F  *  N  K  Q  E  Q  R  F  L  G  Q  R  T  C  C  Q  W  F  Y  E  K  G  S  R  *  A  *  K   : V  D  *  G  R  T  *  K  S  F  R  F  *  R  *  R  N  C  *  *  R  R  *  R  R  H  *  Q  H  K  R  Q  A  A  R  I  L  G  L  G  E   : G  R  R  *  S  S  N  W  G  *  *  A  R  R  *  P  S  S  W  G  *  K  *  S  R  G  R  G  R  G  R  V  *  R  *  S  *  T  R  E  K  P  E  Q  A  K  E  E  G  Y  P  G  C  P  S  G  Q  E  E  L  C  L  E  E  Y  I  Q  R  Q  R  W  E  I  L  T  E  L  K  G  P  *  A  I  E  W  L  V  K  Y  T  L  L  K  N  M  Q  S  S  V  F  E  G  Q  S  T  E  F  L  L  R  E  G  V  E  E  N  I  I  I  *  T  S  Y  R  *  V  T  E  *  F  S  F  D  S  D  I  Y  I  V  L  N  V  C  L  V  Y  I  *  N  F  G  S  M  F  G  R  T  Y  R  L  K  I  V  K  C  V  F  V  V  Y  *  *  L  *  I  K  N  S  Y  V  V  V  K  N  Y  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34070" stop="34183"/>
                    <exon start="34266" stop="34312"/>
                    <exon start="34416" stop="34486"/>
                    <exon start="34579" stop="34692"/>
                    <exon start="34776" stop="34951"/>
                    <exon start="35029" stop="35117"/>
                    <exon start="35834" stop="35951"/>
                    <exon start="36175" stop="36248"/>
                    <exon start="36398" stop="36445"/>
                    <exon start="36667" stop="36835"/>
                    <exon start="37581" stop="37703"/>
                    <exon start="38062" stop="38322"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1401</number_coding_nucleotides>
                  <number_encoded_amino_acids>467</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLTAAKEDKMKLDVNVLRYLSKDDFRVLTAVEMGMRNHEIVPCELIDRIARLKHGGTYKVLKNLLKHKLVHHDSSKYDGFRLTYLGYDFLAIKTLVNRGMFNGVGRQIGVGKESDIFEVVKEDGTVLAMKLHRLGRVSFRAVKSKRDYLRHRSSYNWLYLSRLAALKEFAFMKALEEHGFPVPQAVDCNRHCVIMSLVPGYPLVQVRELQNPDVVFETIIAAVIRLAEHGLIHCDFNEFNIMIDDDEKVTIIDFPQMVSVSHPNAQMYFDRDVECIYKFFAKRYNMSFDENENDSDGLEVDINEVGRPQFSEINKNSGFLDKELAASGFTRKDQDELEKLIEGELENHSDSDDEGTADEEDEEDINNTNVKQLESLDLAKEDVNHQTGDDKHDDNHQVGDENDPEEEEEAESEDDPELEKSLSKQRKKAIQAAHRGKRNFASRNTYKDKGGKSSQNSKVHKQLSGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33589" e_stop="33689"/>
            <exon e_start="34063" e_stop="34183"/>
            <exon e_start="34266" e_stop="34312"/>
            <exon e_start="34416" e_stop="34491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33589" e_stop="33689" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33690" i_stop="34062" i_length="373"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34063" e_stop="34183" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34184" i_stop="34265" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34266" e_stop="34312" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34313" i_stop="34415" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="34416" e_stop="34491" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33589" stop="33689"/>
              <exon start="34063" stop="34183"/>
              <exon start="34266" stop="34312"/>
              <exon start="34416" stop="34491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337441" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTTCACTAGCTCAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAA : GTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAAT : CATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAA : GCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAATGTGAG</gDNA_template>
            <first_frame> F  F  F  S  L  A  Q  K  P  S  I  F  R  V  I  F  F  S  N  S  V  F  L  F  L  K  F  Q  *  S  S  I  N  K :   C  *  Q  S  L  T  A  A  K  E  D  K  M  K  L  D  V  N  V  L  R  Y  L  S  K  D  D  F  R  V  L  T  A  V  E  M  G  M  R  N  :  H  E  I  V  P  C  E  L  I  D  R  I  A  R  L  K :   H  G  G  T  Y  K  V  L  K  N  L  L  K  H  K  L  V  H  H  D  S  S  K  C  E </first_frame>
            <second_frame>  F  F  F  H  *  L  K  S  L  Q  F  F  E  *  F  S  S  A  T  Q  F  F  S  S  *  S  F  N  N  L  P  L  T   : S  V  S  N  H  *  Q  Q  Q  K  R  I  R  *  S  W  M  L  T  F  *  D  T  F  R  K  M  I  S  G  S  L  L  P  L  R  W  E  C  A  I :   M  R  L  C  L  V  S  S  L  T  G  L  L  A  S   : S  M  E  A  H  I  K  C  *  R  I  C  *  S  T  N  *  C  I  M  T  L  L  N  V   </second_frame>
            <third_frame>   F  F  F  T  S  S  K  A  F  N  F  S  S  N  F  L  Q  Q  L  S  F  S  L  L  E  V  S  I  I  F  H  *  Q  :  V  L  A  I  I  N  S  S  K  R  G  *  D  E  V  G  C  *  R  F  E  I  P  F  E  R  *  F  Q  G  P  Y  C  R  *  D  G  N  A  Q   : S  *  D  C  A  L  *  A  H  *  P  D  C  S  P  Q  :  A  W  R  H  I  *  S  V  E  E  F  A  K  A  Q  I  S  A  S  *  L  F  *  M  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34070" stop="34183"/>
                    <exon start="34266" stop="34312"/>
                    <exon start="34416" stop="34491"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLTAAKEDKMKLDVNVLRYLSKDDFRVLTAVEMGMRNHEIVPCELIDRIARLKHGGTYKVLKNLLKHKLVHHDSSKCE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="42096" PGL_stop="38817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42096" e_stop="41979"/>
            <exon e_start="41874" e_stop="41801"/>
            <exon e_start="39682" e_stop="38817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.454" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42096" e_stop="41979" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.454" acc_prob="0.987">
            <gDNA_intron_boundary i_start="41978" i_stop="41875" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41874" e_stop="41801" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.922" acc_prob="0.980">
            <gDNA_intron_boundary i_start="41800" i_stop="39683" i_length="2118"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="39682" e_stop="38817" e_length="866"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42096" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42085" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42081" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42073" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280808" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42066" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42066" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42065" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42065" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42059" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42058" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42058" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42050" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="38904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42043" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42041" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42025" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="38969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42025" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42024" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42021" stop="41979"/>
              <exon start="41874" stop="41801"/>
              <exon start="39682" stop="39233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41873" stop="41801"/>
              <exon start="39682" stop="39506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39556" stop="38982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39529" stop="38817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39448" stop="38886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39407" stop="38826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTTTCTGTGTCTATCATTTACTTAATAGGCAAAAACTTTTGTTCTTGATCAAATTTTGATTCATCATATCCTTCTGTTTATCCAAAAAAATTAAGAAATGGGGTTGCTTTCTAATAG : AATTGATAGAAGCAGCCTCAAACCTGGAGATCATATTTATTCTTGGCGTACTGCTTATATTTATGCCCATCATG : GTATCTATGTTGGGGATAATAAAGTCATTCACTTCACAAGACGTGGTCAAGAAGTAGGAACTGGAACCATTCTGGATCATATTTTGGTAAGTTCAATTCCAAATCGATCTACTGTTCCTTGTACTGTTTGCACCCCACCATCAGATGGTCACGGAGTAGTCTCGTCATGTTTGGACTGCTTTCTTGCTGGAGGTATCCTCTATCGCTTTGAATATGCTGTAACTCCTGCTATCTTCCTCGCAAAAGCACGTGGAGGAACATGCACTCTTGCAGTCTCGGATCCAGATGACATTGTAGTCCATCGAGCAAACTACCTCCTTACAAATGGCTTTGGACTGTACAATGTGTTCAAGAACAACTGTGAGGACTTCGCCATCTACTCTAAGACAGGACTACTCGTGGTAGATGATAGTACAATGGGACAAAGTGGACAAGCAGTGTCTATAATCGGTGGACCACTTGCAGCTGTTATGTCAACACCACTACGTCTAGTCACCACCAACGTTTATGGGATGGTAGCAACAGCTGTTGGGGTCTATTGTGCCAGTCGCTATGCAGCTGATATTGGTATGCGGAGGGATGTGATGAAAGTATCTGCAGAAGATCTAACAACAAGGCTAACAACTGGCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGATATGTAATAACGCGCTATAGAGTCGGAAAGTGAGCTTTCTTTTTAATATACATGGGAGCTTCTAGCTATATGTCTTGAGGCTTCTGTATCTGTTGTACTTTATTATGTGTTGTTTTGCCTCCAAAAGAAGTCGTAATGTGATTGCAGATTTGTGATGTTTAATCTCAGAT</gDNA_template>
            <first_frame> R  F  C  V  Y  H  L  L  N  R  Q  K  L  L  F  L  I  K  F  *  F  I  I  S  F  C  L  S  K  K  I  K  K  W  G  C  F  L  I   : E  L  I  E  A  A  S  N  L  E  I  I  F  I  L  G  V  L  L  I  F  M  P  I  M  :  V  S  M  L  G  I  I  K  S  F  T  S  Q  D  V  V  K  K  *  E  L  E  P  F  W  I  I  F  W  *  V  Q  F  Q  I  D  L  L  F  L  V  L  F  A  P  H  H  Q  M  V  T  E  *  S  R  H  V  W  T  A  F  L  L  E  V  S  S  I  A  L  N  M  L  *  L  L  L  S  S  S  Q  K  H  V  E  E  H  A  L  L  Q  S  R  I  Q  M  T  L  *  S  I  E  Q  T  T  S  L  Q  M  A  L  D  C  T  M  C  S  R  T  T  V  R  T  S  P  S  T  L  R  Q  D  Y  S  W  *  M  I  V  Q  W  D  K  V  D  K  Q  C  L  *  S  V  D  H  L  Q  L  L  C  Q  H  H  Y  V  *  S  P  P  T  F  M  G  W  *  Q  Q  L  L  G  S  I  V  P  V  A  M  Q  L  I  L  V  C  G  G  M  *  *  K  Y  L  Q  K  I  *  Q  Q  G  *  Q  L  A  C  S  G  L  L  N  L  V  S  Q  F  C  H  L  R  L  A  S  I  I  S  *  Y  V  I  T  R  Y  R  V  G  K  *  A  F  F  L  I  Y  M  G  A  S  S  Y  M  S  *  G  F  C  I  C  C  T  L  L  C  V  V  L  P  P  K  E  V  V  M  *  L  Q  I  C  D  V  *  S  Q   </first_frame>
            <second_frame>  V  S  V  S  I  I  Y  L  I  G  K  N  F  C  S  *  S  N  F  D  S  S  Y  P  S  V  Y  P  K  K  L  R  N  G  V  A  F  *  *  :  N  *  *  K  Q  P  Q  T  W  R  S  Y  L  F  L  A  Y  C  L  Y  L  C  P  S  W :   Y  L  C  W  G  *  *  S  H  S  L  H  K  T  W  S  R  S  R  N  W  N  H  S  G  S  Y  F  G  K  F  N  S  K  S  I  Y  C  S  L  Y  C  L  H  P  T  I  R  W  S  R  S  S  L  V  M  F  G  L  L  S  C  W  R  Y  P  L  S  L  *  I  C  C  N  S  C  Y  L  P  R  K  S  T  W  R  N  M  H  S  C  S  L  G  S  R  *  H  C  S  P  S  S  K  L  P  P  Y  K  W  L  W  T  V  Q  C  V  Q  E  Q  L  *  G  L  R  H  L  L  *  D  R  T  T  R  G  R  *  *  Y  N  G  T  K  W  T  S  S  V  Y  N  R  W  T  T  C  S  C  Y  V  N  T  T  T  S  S  H  H  Q  R  L  W  D  G  S  N  S  C  W  G  L  L  C  Q  S  L  C  S  *  Y  W  Y  A  E  G  C  D  E  S  I  C  R  R  S  N  N  K  A  N  N  W  L  A  P  G  C  *  T  *  S  R  S  F  A  T  Y  D  *  L  V  S  F  L  D  M  *  *  R  A  I  E  S  E  S  E  L  S  F  *  Y  T  W  E  L  L  A  I  C  L  E  A  S  V  S  V  V  L  Y  Y  V  L  F  C  L  Q  K  K  S  *  C  D  C  R  F  V  M  F  N  L  R  </second_frame>
            <third_frame>   F  L  C  L  S  F  T  *  *  A  K  T  F  V  L  D  Q  I  L  I  H  H  I  L  L  F  I  Q  K  N  *  E  M  G  L  L  S  N  R :   I  D  R  S  S  L  K  P  G  D  H  I  Y  S  W  R  T  A  Y  I  Y  A  H  H   : G  I  Y  V  G  D  N  K  V  I  H  F  T  R  R  G  Q  E  V  G  T  G  T  I  L  D  H  I  L  V  S  S  I  P  N  R  S  T  V  P  C  T  V  C  T  P  P  S  D  G  H  G  V  V  S  S  C  L  D  C  F  L  A  G  G  I  L  Y  R  F  E  Y  A  V  T  P  A  I  F  L  A  K  A  R  G  G  T  C  T  L  A  V  S  D  P  D  D  I  V  V  H  R  A  N  Y  L  L  T  N  G  F  G  L  Y  N  V  F  K  N  N  C  E  D  F  A  I  Y  S  K  T  G  L  L  V  V  D  D  S  T  M  G  Q  S  G  Q  A  V  S  I  I  G  G  P  L  A  A  V  M  S  T  P  L  R  L  V  T  T  N  V  Y  G  M  V  A  T  A  V  G  V  Y  C  A  S  R  Y  A  A  D  I  G  M  R  R  D  V  M  K  V  S  A  E  D  L  T  T  R  L  T  T  G  L  L  R  V  V  E  P  S  L  A  V  L  P  P  T  T  S  *  Y  H  F  L  I  C  N  N  A  L  *  S  R  K  V  S  F  L  F  N  I  H  G  S  F  *  L  Y  V  L  R  L  L  Y  L  L  Y  F  I  M  C  C  F  A  S  K  R  S  R  N  V  I  A  D  L  *  C  L  I  S  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42001" stop="41979"/>
                    <exon start="41874" stop="41801"/>
                    <exon start="39682" stop="39000"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDNKVIHFTRRGQEVGTGTILDHILVSSIPNRSTVPCTVCTPPSDGHGVVSSCLDCFLAGGILYRFEYAVTPAIFLAKARGGTCTLAVSDPDDIVVHRANYLLTNGFGLYNVFKNNCEDFAIYSKTGLLVVDDSTMGQSGQAVSIIGGPLAAVMSTPLRLVTTNVYGMVATAVGVYCASRYAADIGMRRDVMKVSAEDLTTRLTTGLLRVVEPSLAVLPPTTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="38825" PGL_stop="39002"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38825" e_stop="39002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38825" e_stop="39002" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38825" stop="39002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAACATCACAAATCTGCAATCACATTACGACTTCTTTTGGAGGCAAAACAACACATAATAAAGTACAACAGATACAGAAGCCTCAAGACATATAGCTAGAAGCTCCCATGTATATTAAAAAGAAAGCTCACTTTCCGACTCTATAGCGCGTTATTACATATCAAGAAATGATACTA</gDNA_template>
            <first_frame> L  N  I  T  N  L  Q  S  H  Y  D  F  F  W  R  Q  N  N  T  *  *  S  T  T  D  T  E  A  S  R  H  I  A  R  S  S  H  V  Y  *  K  E  S  S  L  S  D  S  I  A  R  Y  Y  I  S  R  N  D  T  </first_frame>
            <second_frame>  *  T  S  Q  I  C  N  H  I  T  T  S  F  G  G  K  T  T  H  N  K  V  Q  Q  I  Q  K  P  Q  D  I  *  L  E  A  P  M  Y  I  K  K  K  A  H  F  P  T  L  *  R  V  I  T  Y  Q  E  M  I  L </second_frame>
            <third_frame>   K  H  H  K  S  A  I  T  L  R  L  L  L  E  A  K  Q  H  I  I  K  Y  N  R  Y  R  S  L  K  T  Y  S  *  K  L  P  C  I  L  K  R  K  L  T  F  R  L  Y  S  A  L  L  H  I  K  K  *  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="43827" PGL_stop="43617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43827" e_stop="43617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="43827" e_stop="43617" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43827" stop="43617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281575" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTTCGAGCTCCTTAGCTCTGTTTCTGATGAGTTGTAGATCTGCGTCGGCGGAAGAACGAACCTCTTTCCATCCTTTAGATATCAATGAAAACGCTTTCTCCGCCGTAGACGAATACGACGACGATGACGGCGTCGTTTTAGTCTCCGGCGGCTTGAAATTCATCATTTTTTTCTAGGGTTTTAGCAATTGCTCTGTTTTTTCTTCTTC</gDNA_template>
            <first_frame> S  F  R  A  P  *  L  C  F  *  *  V  V  D  L  R  R  R  K  N  E  P  L  S  I  L  *  I  S  M  K  T  L  S  P  P  *  T  N  T  T  T  M  T  A  S  F  *  S  P  A  A  *  N  S  S  F  F  S  R  V  L  A  I  A  L  F  F  L  L  </first_frame>
            <second_frame>  V  F  E  L  L  S  S  V  S  D  E  L  *  I  C  V  G  G  R  T  N  L  F  P  S  F  R  Y  Q  *  K  R  F  L  R  R  R  R  I  R  R  R  *  R  R  R  F  S  L  R  R  L  E  I  H  H  F  F  L  G  F  *  Q  L  L  C  F  F  F  F </second_frame>
            <third_frame>   F  S  S  S  L  A  L  F  L  M  S  C  R  S  A  S  A  E  E  R  T  S  F  H  P  L  D  I  N  E  N  A  F  S  A  V  D  E  Y  D  D  D  D  G  V  V  L  V  S  G  G  L  K  F  I  I  F  F  *  G  F  S  N  C  S  V  F  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="44524" PGL_stop="45246"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44524" e_stop="45246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="44524" e_stop="45246" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44524" stop="45196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44537" stop="45246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGGGATTATATGATACGCGTAAGGTCTGTATACACTTTATCCTCTACTTGTGGAATTACACGATAGGAGTAAGGTCTGCGTACACTCTATCCTTGCAGACTCTACTTGTGGGATTACATGATACGAGTAAGATCTGCGTACACTCTATTCTCTACTTGTGGGATTACATGATAGGAGTAAGGTCTGTGTACACTCTGTCCTTCGTAGACTCTACTTGTGAGATTACATTGGGTATGTCGTTGTTGTTGATTGTTATAAAAGAGAAAAGTGGTGGCTTTTTGGGCAAAAGAACCAAAAAGTTACTACCTTTTTCTTTTGTAGAAACAGCCCGAACAAAAGGAGTTCATGAAACTTTTTTTTTTGTCACAAATTTAAGTTTTGAACTTTTTGAGCCCATGCGACAATGTTAATGTTATGTTTATGTACGAGGAAGCAGAATTACTTAAAATAAGGCTAACTAGTTGGAGGTGATTTGCTTCACGGACTAGCTATGGAGGAATTATAGCACGAAGATTATCTTGTGTGAATTGTGATCTATATATATAGTTTTTACGCAGTCAATAATTTATGTAAGTGTTAGTTATACGAGTTTTACACTAGAAGCTAAAGTTGTACTAGTAATGTAGAGTTGTATGCCGAATTTTTTTAGAAGAGAGTTTTATATGAAACGTTGTATTAAAATTGATCCGACTTGCTACTTATCACGGCTTTCCTTTTCACA</gDNA_template>
            <first_frame> C  G  I  I  *  Y  A  *  G  L  Y  T  L  Y  P  L  L  V  E  L  H  D  R  S  K  V  C  V  H  S  I  L  A  D  S  T  C  G  I  T  *  Y  E  *  D  L  R  T  L  Y  S  L  L  V  G  L  H  D  R  S  K  V  C  V  H  S  V  L  R  R  L  Y  L  *  D  Y  I  G  Y  V  V  V  V  D  C  Y  K  R  E  K  W  W  L  F  G  Q  K  N  Q  K  V  T  T  F  F  F  C  R  N  S  P  N  K  R  S  S  *  N  F  F  F  C  H  K  F  K  F  *  T  F  *  A  H  A  T  M  L  M  L  C  L  C  T  R  K  Q  N  Y  L  K  *  G  *  L  V  G  G  D  L  L  H  G  L  A  M  E  E  L  *  H  E  D  Y  L  V  *  I  V  I  Y  I  Y  S  F  Y  A  V  N  N  L  C  K  C  *  L  Y  E  F  Y  T  R  S  *  S  C  T  S  N  V  E  L  Y  A  E  F  F  *  K  R  V  L  Y  E  T  L  Y  *  N  *  S  D  L  L  L  I  T  A  F  L  F  T </first_frame>
            <second_frame>  V  G  L  Y  D  T  R  K  V  C  I  H  F  I  L  Y  L  W  N  Y  T  I  G  V  R  S  A  Y  T  L  S  L  Q  T  L  L  V  G  L  H  D  T  S  K  I  C  V  H  S  I  L  Y  L  W  D  Y  M  I  G  V  R  S  V  Y  T  L  S  F  V  D  S  T  C  E  I  T  L  G  M  S  L  L  L  I  V  I  K  E  K  S  G  G  F  L  G  K  R  T  K  K  L  L  P  F  S  F  V  E  T  A  R  T  K  G  V  H  E  T  F  F  F  V  T  N  L  S  F  E  L  F  E  P  M  R  Q  C  *  C  Y  V  Y  V  R  G  S  R  I  T  *  N  K  A  N  *  L  E  V  I  C  F  T  D  *  L  W  R  N  Y  S  T  K  I  I  L  C  E  L  *  S  I  Y  I  V  F  T  Q  S  I  I  Y  V  S  V  S  Y  T  S  F  T  L  E  A  K  V  V  L  V  M  *  S  C  M  P  N  F  F  R  R  E  F  Y  M  K  R  C  I  K  I  D  P  T  C  Y  L  S  R  L  S  F  S   </second_frame>
            <third_frame>   W  D  Y  M  I  R  V  R  S  V  Y  T  L  S  S  T  C  G  I  T  R  *  E  *  G  L  R  T  L  Y  P  C  R  L  Y  L  W  D  Y  M  I  R  V  R  S  A  Y  T  L  F  S  T  C  G  I  T  *  *  E  *  G  L  C  T  L  C  P  S  *  T  L  L  V  R  L  H  W  V  C  R  C  C  *  L  L  *  K  R  K  V  V  A  F  W  A  K  E  P  K  S  Y  Y  L  F  L  L  *  K  Q  P  E  Q  K  E  F  M  K  L  F  F  L  S  Q  I  *  V  L  N  F  L  S  P  C  D  N  V  N  V  M  F  M  Y  E  E  A  E  L  L  K  I  R  L  T  S  W  R  *  F  A  S  R  T  S  Y  G  G  I  I  A  R  R  L  S  C  V  N  C  D  L  Y  I  *  F  L  R  S  Q  *  F  M  *  V  L  V  I  R  V  L  H  *  K  L  K  L  Y  *  *  C  R  V  V  C  R  I  F  L  E  E  S  F  I  *  N  V  V  L  K  L  I  R  L  A  T  Y  H  G  F  P  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44525" stop="44935"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGLYDTRKVCIHFILYLWNYTIGVRSAYTLSLQTLLVGLHDTSKICVHSILYLWDYMIGVRSVYTLSFVDSTCEITLGMSLLLIVIKEKSGGFLGKRTKKLLPFSFVETARTKGVHETFFFVTNLSFELFEPMRQC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="45706" PGL_stop="47668"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45706" e_stop="45726"/>
            <exon e_start="45816" e_stop="46288"/>
            <exon e_start="46384" e_stop="46650"/>
            <exon e_start="46827" e_stop="47176"/>
            <exon e_start="47448" e_stop="47668"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.970" e_score="0.952"/>
          <exon-intron don_prob="0.938" acc_prob="0.920" e_score="0.996"/>
          <exon-intron don_prob="0.920" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="45706" e_stop="45726" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.970">
            <gDNA_intron_boundary i_start="45727" i_stop="45815" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="45816" e_stop="46288" e_length="473"/>
          </exon>
          <intron i_serial="2" don_prob="0.938" acc_prob="0.920">
            <gDNA_intron_boundary i_start="46289" i_stop="46383" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46384" e_stop="46650" e_length="267"/>
          </exon>
          <intron i_serial="3" don_prob="0.920" acc_prob="0.978">
            <gDNA_intron_boundary i_start="46651" i_stop="46826" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46827" e_stop="47176" e_length="350"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.929">
            <gDNA_intron_boundary i_start="47177" i_stop="47447" i_length="271"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="47448" e_stop="47668" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45706" stop="45726"/>
              <exon start="45816" stop="46288"/>
              <exon start="46384" stop="46563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46546" stop="46650"/>
              <exon start="46827" stop="47176"/>
              <exon start="47448" stop="47668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46588" stop="46650"/>
              <exon start="46827" stop="47159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAAATTGGCATAAGAAAAG : ATATCTCAGACAAGATCGTTGAGAGTTTATGCAGCAAACGGCGAAACAAGCTATTACCTGAAGGAGATTGTTCCCTGATCGAAGGCGATAATATGATTGATGAACTAGAACTACGAATTGCCAGTGTACTACAAAGTACTGGTCATCATTATGAAGGTGGGTTTTGGAGCAATTCGACAAAGCAAAACGTATCAGATGGTAAAAGACATGTAGCCATAGTCACAACTGCTAGCCTTCCGTGGATGACCGGAACAGCTGTCAATCCTCTCTTCCGAGCGGCTTATTTGGCCAAGTCTGAAAAGCAGAACGTTACACTCTTGGTTCCATGGCTATGTAAATCGGACCAAGAACTAGTTTATCCAAACAATCTTACATTTAGTTCACCAGAAGAGCAGGAACTCTACATACGGAATTGGCTTGAGGAAAGAGTCGGTTTCAAGACTGATTTCAAGATCTCGTTTTATCCTGGAAAG : TTCTCCAAGGAAAGGCGAAGTATACTACCAGCTGGAGATACTACTCAGTTTATCCCATCACGGGATGCTGATATTGCAATCTTAGAGGAGCCAGAACATCTAAACTGGTACCACCATGGCAAACGTTGGACTGATAAGTTTAACCATGTCGTTGGTATTGTTCACACAAATTATTTGGAGTATATCAAAAGAGAGAAGAATGGAGCTCTTCAAGCTTTCCTTGTGAAACACGTAAATAATTGGGTCACAAGAGCGCATTGTGACAAG : GTGCTTCGCCTTTCTGCTGCTACACAGGATTTACCCAGGTCTGTGGTCTGCAACGTTCATGGTGTAAATCCGAAGTTTTTGAAAATTGGAGAAAAAATGGCTGCAGAAAGACAAAACGGTCAGCAAGTTTTCTCTAAAGGTGCATACTTCTTGGGAAAAATGGTTTGGGCTAAGGGTTACAGGGAGTTAATAGACCTTTTAGCGAAGCACAAAAGTGACCTTGATGGTTTTAATATGGATTTGTTTGGCAACGGGGAAGACGCTCATGAAGTGCAGACAACGGCTAGGACGTTAAATTTGAATGTCAACTTCATGAAAGGCAGAGACCACGCGGATGATTCTCTTCATAG : TTATAAAGTCTTTATAAATCCTAGTATCAGCGATGTACTCTGTACAGCTACAGCTGAGGCACTCGCTATGGGGAAATTTGTAGTTTGTGCAGATCATCCGTCTAATGAGTTCTTCCAGGCATTTCCTAACTGCTTGACGTATAAGACATCAGAAGACTTTGTAACAAAGGTTAAAGAGGCAATGACCGGTGAACCTCAGCCTCTAACTCCCGAGGAACAAT</gDNA_template>
            <first_frame> I  K  L  A  *  E  K  :  I  S  Q  T  R  S  L  R  V  Y  A  A  N  G  E  T  S  Y  Y  L  K  E  I  V  P  *  S  K  A  I  I  *  L  M  N  *  N  Y  E  L  P  V  Y  Y  K  V  L  V  I  I  M  K  V  G  F  G  A  I  R  Q  S  K  T  Y  Q  M  V  K  D  M  *  P  *  S  Q  L  L  A  F  R  G  *  P  E  Q  L  S  I  L  S  S  E  R  L  I  W  P  S  L  K  S  R  T  L  H  S  W  F  H  G  Y  V  N  R  T  K  N  *  F  I  Q  T  I  L  H  L  V  H  Q  K  S  R  N  S  T  Y  G  I  G  L  R  K  E  S  V  S  R  L  I  S  R  S  R  F  I  L  E  S :   S  P  R  K  G  E  V  Y  Y  Q  L  E  I  L  L  S  L  S  H  H  G  M  L  I  L  Q  S  *  R  S  Q  N  I  *  T  G  T  T  M  A  N  V  G  L  I  S  L  T  M  S  L  V  L  F  T  Q  I  I  W  S  I  S  K  E  R  R  M  E  L  F  K  L  S  L  *  N  T  *  I  I  G  S  Q  E  R  I  V  T  R :   C  F  A  F  L  L  L  H  R  I  Y  P  G  L  W  S  A  T  F  M  V  *  I  R  S  F  *  K  L  E  K  K  W  L  Q  K  D  K  T  V  S  K  F  S  L  K  V  H  T  S  W  E  K  W  F  G  L  R  V  T  G  S  *  *  T  F  *  R  S  T  K  V  T  L  M  V  L  I  W  I  C  L  A  T  G  K  T  L  M  K  C  R  Q  R  L  G  R  *  I  *  M  S  T  S  *  K  A  E  T  T  R  M  I  L  F  I   : V  I  K  S  L  *  I  L  V  S  A  M  Y  S  V  Q  L  Q  L  R  H  S  L  W  G  N  L  *  F  V  Q  I  I  R  L  M  S  S  S  R  H  F  L  T  A  *  R  I  R  H  Q  K  T  L  *  Q  R  L  K  R  Q  *  P  V  N  L  S  L  *  L  P  R  N  N </first_frame>
            <second_frame>  S  N  W  H  K  K  R :   Y  L  R  Q  D  R  *  E  F  M  Q  Q  T  A  K  Q  A  I  T  *  R  R  L  F  P  D  R  R  R  *  Y  D  *  *  T  R  T  T  N  C  Q  C  T  T  K  Y  W  S  S  L  *  R  W  V  L  E  Q  F  D  K  A  K  R  I  R  W  *  K  T  C  S  H  S  H  N  C  *  P  S  V  D  D  R  N  S  C  Q  S  S  L  P  S  G  L  F  G  Q  V  *  K  A  E  R  Y  T  L  G  S  M  A  M  *  I  G  P  R  T  S  L  S  K  Q  S  Y  I  *  F  T  R  R  A  G  T  L  H  T  E  L  A  *  G  K  S  R  F  Q  D  *  F  Q  D  L  V  L  S  W  K   : V  L  Q  G  K  A  K  Y  T  T  S  W  R  Y  Y  S  V  Y  P  I  T  G  C  *  Y  C  N  L  R  G  A  R  T  S  K  L  V  P  P  W  Q  T  L  D  *  *  V  *  P  C  R  W  Y  C  S  H  K  L  F  G  V  Y  Q  K  R  E  E  W  S  S  S  S  F  P  C  E  T  R  K  *  L  G  H  K  S  A  L  *  Q   : G  A  S  P  F  C  C  Y  T  G  F  T  Q  V  C  G  L  Q  R  S  W  C  K  S  E  V  F  E  N  W  R  K  N  G  C  R  K  T  K  R  S  A  S  F  L  *  R  C  I  L  L  G  K  N  G  L  G  *  G  L  Q  G  V  N  R  P  F  S  E  A  Q  K  *  P  *  W  F  *  Y  G  F  V  W  Q  R  G  R  R  S  *  S  A  D  N  G  *  D  V  K  F  E  C  Q  L  H  E  R  Q  R  P  R  G  *  F  S  S  *  :  L  *  S  L  Y  K  S  *  Y  Q  R  C  T  L  Y  S  Y  S  *  G  T  R  Y  G  E  I  C  S  L  C  R  S  S  V  *  *  V  L  P  G  I  S  *  L  L  D  V  *  D  I  R  R  L  C  N  K  G  *  R  G  N  D  R  *  T  S  A  S  N  S  R  G  T   </second_frame>
            <third_frame>   Q  I  G  I  R  K   : D  I  S  D  K  I  V  E  S  L  C  S  K  R  R  N  K  L  L  P  E  G  D  C  S  L  I  E  G  D  N  M  I  D  E  L  E  L  R  I  A  S  V  L  Q  S  T  G  H  H  Y  E  G  G  F  W  S  N  S  T  K  Q  N  V  S  D  G  K  R  H  V  A  I  V  T  T  A  S  L  P  W  M  T  G  T  A  V  N  P  L  F  R  A  A  Y  L  A  K  S  E  K  Q  N  V  T  L  L  V  P  W  L  C  K  S  D  Q  E  L  V  Y  P  N  N  L  T  F  S  S  P  E  E  Q  E  L  Y  I  R  N  W  L  E  E  R  V  G  F  K  T  D  F  K  I  S  F  Y  P  G  K  :  F  S  K  E  R  R  S  I  L  P  A  G  D  T  T  Q  F  I  P  S  R  D  A  D  I  A  I  L  E  E  P  E  H  L  N  W  Y  H  H  G  K  R  W  T  D  K  F  N  H  V  V  G  I  V  H  T  N  Y  L  E  Y  I  K  R  E  K  N  G  A  L  Q  A  F  L  V  K  H  V  N  N  W  V  T  R  A  H  C  D  K  :  V  L  R  L  S  A  A  T  Q  D  L  P  R  S  V  V  C  N  V  H  G  V  N  P  K  F  L  K  I  G  E  K  M  A  A  E  R  Q  N  G  Q  Q  V  F  S  K  G  A  Y  F  L  G  K  M  V  W  A  K  G  Y  R  E  L  I  D  L  L  A  K  H  K  S  D  L  D  G  F  N  M  D  L  F  G  N  G  E  D  A  H  E  V  Q  T  T  A  R  T  L  N  L  N  V  N  F  M  K  G  R  D  H  A  D  D  S  L  H  S :   Y  K  V  F  I  N  P  S  I  S  D  V  L  C  T  A  T  A  E  A  L  A  M  G  K  F  V  V  C  A  D  H  P  S  N  E  F  F  Q  A  F  P  N  C  L  T  Y  K  T  S  E  D  F  V  T  K  V  K  E  A  M  T  G  E  P  Q  P  L  T  P  E  E  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45708" stop="45726"/>
                    <exon start="45816" stop="46288"/>
                    <exon start="46384" stop="46650"/>
                    <exon start="46827" stop="47176"/>
                    <exon start="47448" stop="47667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1329</number_coding_nucleotides>
                  <number_encoded_amino_acids>443</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIGIRKDISDKIVESLCSKRRNKLLPEGDCSLIEGDNMIDELELRIASVLQSTGHHYEGGFWSNSTKQNVSDGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSEKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQELYIRNWLEERVGFKTDFKISFYPGKFSKERRSILPAGDTTQFIPSRDADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFLVKHVNNWVTRAHCDKVLRLSAATQDLPRSVVCNVHGVNPKFLKIGEKMAAERQNGQQVFSKGAYFLGKMVWAKGYRELIDLLAKHKSDLDGFNMDLFGNGEDAHEVQTTARTLNLNVNFMKGRDHADDSLHSYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFQAFPNCLTYKTSEDFVTKVKEAMTGEPQPLTPEEQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="47919" PGL_stop="48304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47919" e_stop="48304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="47919" e_stop="48304" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47919" stop="48304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281364" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATTGTGAAGATCTCAATCTCTTACCTCCCCAGGTAGAAAACCCAATTTATGGCTGGTAGTTATATATATACACATCTCATTTGACCTGTATAGGTGTGATGTAACTTGGATACATACTCATAACTCCAATCGTTACCTGGTATTAGTGTCGTAACCAGGATTTTCACGTAAAAAGTCATTTTAATCTTATATATAGCGTATTTTTTTTTGCAAAGAGATTCGGATGAAACCCTTCGTGTTCCCTAGCTCCACCTCTGCACTAGTGTTTCAGGTTTTATTTTGATGATTTTTGTAACTAGTGATGCAGCAAGAAAAGTAAATAGGATGTGTAAAATTTGTAAAATTATGATATATGTTCTTTGTCTATCTAAAATGTGTCAAATT</gDNA_template>
            <first_frame> A  L  *  R  S  Q  S  L  T  S  P  G  R  K  P  N  L  W  L  V  V  I  Y  I  H  I  S  F  D  L  Y  R  C  D  V  T  W  I  H  T  H  N  S  N  R  Y  L  V  L  V  S  *  P  G  F  S  R  K  K  S  F  *  S  Y  I  *  R  I  F  F  C  K  E  I  R  M  K  P  F  V  F  P  S  S  T  S  A  L  V  F  Q  V  L  F  *  *  F  L  *  L  V  M  Q  Q  E  K  *  I  G  C  V  K  F  V  K  L  *  Y  M  F  F  V  Y  L  K  C  V  K   </first_frame>
            <second_frame>  H  C  E  D  L  N  L  L  P  P  Q  V  E  N  P  I  Y  G  W  *  L  Y  I  Y  T  S  H  L  T  C  I  G  V  M  *  L  G  Y  I  L  I  T  P  I  V  T  W  Y  *  C  R  N  Q  D  F  H  V  K  S  H  F  N  L  I  Y  S  V  F  F  F  A  K  R  F  G  *  N  P  S  C  S  L  A  P  P  L  H  *  C  F  R  F  Y  F  D  D  F  C  N  *  *  C  S  K  K  S  K  *  D  V  *  N  L  *  N  Y  D  I  C  S  L  S  I  *  N  V  S  N  </second_frame>
            <third_frame>   I  V  K  I  S  I  S  Y  L  P  R  *  K  T  Q  F  M  A  G  S  Y  I  Y  T  H  L  I  *  P  V  *  V  *  C  N  L  D  T  Y  S  *  L  Q  S  L  P  G  I  S  V  V  T  R  I  F  T  *  K  V  I  L  I  L  Y  I  A  Y  F  F  L  Q  R  D  S  D  E  T  L  R  V  P  *  L  H  L  C  T  S  V  S  G  F  I  L  M  I  F  V  T  S  D  A  A  R  K  V  N  R  M  C  K  I  C  K  I  M  I  Y  V  L  C  L  S  K  M  C  Q  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="53599" PGL_stop="57434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53599" e_stop="53747"/>
            <exon e_start="56763" e_stop="57434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.869" e_score="0.953"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="53599" e_stop="53747" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.869">
            <gDNA_intron_boundary i_start="53748" i_stop="56762" i_length="3015"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="56763" e_stop="57434" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53599" stop="53747"/>
              <exon start="56763" stop="57434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTACAACTTAACAAACAGCACACTCTATACACTCTCTCTCTCTCTCTGGATCTTGCAGATCTGAGTATAGACCAAATTTTTTGTTCCTACAACCGAATTTCTCCTCTGAAGATTCAATCTGATTCAACATTTGCTGGATTTGATCTG : GTAAGGTGACTAGAAGAAAAAAATGGAGAAGTCATGCTCATTGTTGATACATTTTGATAAGGGTACGCCTGCTCTTGCCAATGAGATCAAAGAAGCACTTGAAGGAAATGATATCCCCGCCAAGGTTGAAGCTATGAAGAAAGCCGTAATGCTTTTATTGAATGGAGAAACCCTACCTCAGCTCTTCATCACTATTATTAGATATGTCTTGCCTTCTGAGGATCACACAATTCAAAAACTGTTACTTTTGTATTTGGAGATCATTGAGAAGACAGATTCTAAGGGGCGTGTGCTGCCCGAGATGATCCTAATCTGCCAGAACTTGAGGAATAATTTGCAGCATCCCAATGAGTACCTTCGTGGAGCTACGTTGAGATTTCTTTGCAGGCTGAATGAGGTTGATATAATTGAACCTCTAATTCCATCAATTATGAACAACTTGGAGCACCGACATCCATTTGTGAGGAGGAATGCAATTCTTGCTGTGATGTCTGTTTACAAGCTCCCACATGGTGAGCAGCTCCTGGTAGACGCACCAGAGAAGATTGAGAATCTCCTAACCACTGAGCAGGATCCATCGGCTAAGAGGAATGCATTTCTTATGCTCTTCCAATGTGCTCAGGAGCGTGCCATCAATTACCTCTTGACTCATGTTGATAGAGTCTCTGATTG</gDNA_template>
            <first_frame> A  Y  N  L  T  N  S  T  L  Y  T  L  S  L  S  L  W  I  L  Q  I  *  V  *  T  K  F  F  V  P  T  T  E  F  L  L  *  R  F  N  L  I  Q  H  L  L  D  L  I  W :   *  G  D  *  K  K  K  M  E  K  S  C  S  L  L  I  H  F  D  K  G  T  P  A  L  A  N  E  I  K  E  A  L  E  G  N  D  I  P  A  K  V  E  A  M  K  K  A  V  M  L  L  L  N  G  E  T  L  P  Q  L  F  I  T  I  I  R  Y  V  L  P  S  E  D  H  T  I  Q  K  L  L  L  L  Y  L  E  I  I  E  K  T  D  S  K  G  R  V  L  P  E  M  I  L  I  C  Q  N  L  R  N  N  L  Q  H  P  N  E  Y  L  R  G  A  T  L  R  F  L  C  R  L  N  E  V  D  I  I  E  P  L  I  P  S  I  M  N  N  L  E  H  R  H  P  F  V  R  R  N  A  I  L  A  V  M  S  V  Y  K  L  P  H  G  E  Q  L  L  V  D  A  P  E  K  I  E  N  L  L  T  T  E  Q  D  P  S  A  K  R  N  A  F  L  M  L  F  Q  C  A  Q  E  R  A  I  N  Y  L  L  T  H  V  D  R  V  S  D   </first_frame>
            <second_frame>  L  T  T  *  Q  T  A  H  S  I  H  S  L  S  L  S  G  S  C  R  S  E  Y  R  P  N  F  L  F  L  Q  P  N  F  S  S  E  D  S  I  *  F  N  I  C  W  I  *  S   : G  K  V  T  R  R  K  K  W  R  S  H  A  H  C  *  Y  I  L  I  R  V  R  L  L  L  P  M  R  S  K  K  H  L  K  E  M  I  S  P  P  R  L  K  L  *  R  K  P  *  C  F  Y  *  M  E  K  P  Y  L  S  S  S  S  L  L  L  D  M  S  C  L  L  R  I  T  Q  F  K  N  C  Y  F  C  I  W  R  S  L  R  R  Q  I  L  R  G  V  C  C  P  R  *  S  *  S  A  R  T  *  G  I  I  C  S  I  P  M  S  T  F  V  E  L  R  *  D  F  F  A  G  *  M  R  L  I  *  L  N  L  *  F  H  Q  L  *  T  T  W  S  T  D  I  H  L  *  G  G  M  Q  F  L  L  *  C  L  F  T  S  S  H  M  V  S  S  S  W  *  T  H  Q  R  R  L  R  I  S  *  P  L  S  R  I  H  R  L  R  G  M  H  F  L  C  S  S  N  V  L  R  S  V  P  S  I  T  S  *  L  M  L  I  E  S  L  I  </second_frame>
            <third_frame>   L  Q  L  N  K  Q  H  T  L  Y  T  L  S  L  S  L  D  L  A  D  L  S  I  D  Q  I  F  C  S  Y  N  R  I  S  P  L  K  I  Q  S  D  S  T  F  A  G  F  D  L  :  V  R  *  L  E  E  K  N  G  E  V  M  L  I  V  D  T  F  *  *  G  Y  A  C  S  C  Q  *  D  Q  R  S  T  *  R  K  *  Y  P  R  Q  G  *  S  Y  E  E  S  R  N  A  F  I  E  W  R  N  P  T  S  A  L  H  H  Y  Y  *  I  C  L  A  F  *  G  S  H  N  S  K  T  V  T  F  V  F  G  D  H  *  E  D  R  F  *  G  A  C  A  A  R  D  D  P  N  L  P  E  L  E  E  *  F  A  A  S  Q  *  V  P  S  W  S  Y  V  E  I  S  L  Q  A  E  *  G  *  Y  N  *  T  S  N  S  I  N  Y  E  Q  L  G  A  P  T  S  I  C  E  E  E  C  N  S  C  C  D  V  C  L  Q  A  P  T  W  *  A  A  P  G  R  R  T  R  E  D  *  E  S  P  N  H  *  A  G  S  I  G  *  E  E  C  I  S  Y  A  L  P  M  C  S  G  A  C  H  Q  L  P  L  D  S  C  *  *  S  L  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56776" stop="57432"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKMEKSCSLLIHFDKGTPALANEIKEALEGNDIPAKVEAMKKAVMLLLNGETLPQLFITIIRYVLPSEDHTIQKLLLLYLEIIEKTDSKGRVLPEMILICQNLRNNLQHPNEYLRGATLRFLCRLNEVDIIEPLIPSIMNNLEHRHPFVRRNAILAVMSVYKLPHGEQLLVDAPEKIENLLTTEQDPSAKRNAFLMLFQCAQERAINYLLTHVDRVSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="58239" PGL_stop="63448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58239" e_stop="58833"/>
            <exon e_start="60658" e_stop="61167"/>
            <exon e_start="61661" e_stop="61746"/>
            <exon e_start="62446" e_stop="62689"/>
            <exon e_start="63097" e_stop="63448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58239" e_stop="58833" e_length="595"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.992">
            <gDNA_intron_boundary i_start="58834" i_stop="60657" i_length="1824"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60658" e_stop="61167" e_length="510"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="61168" i_stop="61660" i_length="493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61661" e_stop="61746" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.868">
            <gDNA_intron_boundary i_start="61747" i_stop="62445" i_length="699"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62446" e_stop="62689" e_length="244"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.994">
            <gDNA_intron_boundary i_start="62690" i_stop="63096" i_length="407"/>
          </intron>
          <exon e_serial="5" e_score="0.946">
            <gDNA_exon_boundary e_start="63097" e_stop="63448" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58239" stop="58764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58505" stop="58833"/>
              <exon start="60658" stop="60741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58566" stop="58833"/>
              <exon start="60658" stop="60951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="58833"/>
              <exon start="60658" stop="61167"/>
              <exon start="61661" stop="61705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58621" stop="58833"/>
              <exon start="60658" stop="60963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58633" stop="58833"/>
              <exon start="60658" stop="60827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58669" stop="58833"/>
              <exon start="60658" stop="60927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58751" stop="58833"/>
              <exon start="60658" stop="61102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58767" stop="58833"/>
              <exon start="60658" stop="61167"/>
              <exon start="61661" stop="61719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58768" stop="58833"/>
              <exon start="60658" stop="60963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58774" stop="58833"/>
              <exon start="60658" stop="61167"/>
              <exon start="61661" stop="61746"/>
              <exon start="62446" stop="62604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60733" stop="61167"/>
              <exon start="61661" stop="61746"/>
              <exon start="62446" stop="62689"/>
              <exon start="63097" stop="63278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60820" stop="61167"/>
              <exon start="61661" stop="61746"/>
              <exon start="62446" stop="62547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61102" stop="61167"/>
              <exon start="61661" stop="61746"/>
              <exon start="62446" stop="62689"/>
              <exon start="63097" stop="63209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61102" stop="61167"/>
              <exon start="61661" stop="61746"/>
              <exon start="62446" stop="62689"/>
              <exon start="63097" stop="63129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62494" stop="62689"/>
              <exon start="63097" stop="63448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62544" stop="62689"/>
              <exon start="63097" stop="63366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62601" stop="62689"/>
              <exon start="63097" stop="63366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTCTGAGGAAAGTGAAGCTGCTGATTCTTCAAAAAAGACTCAGCAAGCAAACTCCATTACTACTTTGTCATCTAGAAGACCAGCTGTACTTGCTGATGGGACATATGCTACTCAAAGTGCTGCATCTGAAACTGCTTTCTCTCCCCCGACAGTTGTTCAAGGATCTTTAACCACTGGAAACTTGAGATCCCTCCTTCTCACTGGTGATTTCTTCTTGGGAGCAGTTGTTGCTTGTACACTGACTAAGCTCATTCTGAGGCTGGAAGAAGTTCAGCCATCAAAACTTGAATTGAACAAAGCTACAACAAATGCATTACTGATCATGGTCTCAATGATACAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAAGCAAAGGCACAAATTTCTCGCTCCCAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGTAGGAAG : GGAATGAGCCAACTGGAGTTGGAAGATGAAGTCCAGGATGATTTGAAACGTGCCACTGGAGAATTCGTCAAGGATGAGAATGATGCTAATAAGCTAAGCAGGGTACTGCAGCTTACAGGATTTAGTGATCCTGTTTATGCTGAAGCATATGTAACAGTTCATCATTATGACATTGTCCTAGATGTTACCGTGATAAATCGAACCAAAGAGACACTTCAGAATTTGTGTTTGGAACTGGCAACCATGGGTGATCTTAAGCTCGTTGAGCGTCCACAGAATTATACTATAGCTCCTGAGTCAAGCAAGCAGATAAAAGCTAATATCAAGGTGTCTTCCACCGAGACTGGAGTGATTTTTGGTAACATTGTCTATGAGTCTTCAAATGTGCTCGAGCGAACTGTTGTTGTGCTCAATGATATCCATATTGACATCATGGATTACATCTCTCCTGCTGTTTGCAGTGAGGCTGCTTTTAGAACTATGTGGGCTGAATTTGAGTGGGAAAACAAG : GTTGCTGTCAACACTGTCATTCAAGATGAAAAAGGATTTCTTGACCATATTATCAAATCAACCAACATGAAGTGTCTGACTGCACC : ATCTGCTCTGGAAGATGAATGTGGATTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGAGAGGATGCTTTGGTGAATTTGAGCATTGAAAAGCAATCAGATGGTAAGCTGAGTGGTTATATTAGAATAAGAAGCAAAACACAAGGAATTGCTCTTAGCTTGGGAGACAAAATAACACTCAAGCAGAAGGGAGGCAATTGATCTTATTGTGTTGTTATGGTCCTCTCCTAGACAGCAAAG : GTCATTAAAACATGAAACTGAGACTCCTTCACATCTCCCATTTGTAGCTTGGAGGAGTGCTGGGGTTATTGAGTTAAAAACCTGTAGAAATTGTATTACTGCACTTACTTTTAGATTCGGATCCGCGAAATTCGAGCATTTTACTCTTCTTTGAGGACATTTTTTGGTAGAGAAAATTGGAAAGAGAGTAGTGCTGCTTTATCTCTGTGTTGTAAGTTAACTGAATTTGGTACAAGTCACTCTTTGCTTGTTACTTTCTGTTAACTTCCAATTCCTGATTTCCATTTTTTTTTTTGTAAACAAAGGTCAACTCAGTTTCCATTGCCATATTATATATTGAAATTTTAGGCTT</gDNA_template>
            <first_frame> S  F  *  G  K  *  S  C  *  F  F  K  K  D  S  A  S  K  L  H  Y  Y  F  V  I  *  K  T  S  C  T  C  *  W  D  I  C  Y  S  K  C  C  I  *  N  C  F  L  S  P  D  S  C  S  R  I  F  N  H  W  K  L  E  I  P  P  S  H  W  *  F  L  L  G  S  S  C  C  L  Y  T  D  *  A  H  S  E  A  G  R  S  S  A  I  K  T  *  I  E  Q  S  Y  N  K  C  I  T  D  H  G  L  N  D  T  A  R  A  V  S  C  S  S  S  P  N  *  Q  *  F  S  *  Q  N  S  S  L  H  K  I  A  L  *  Y  G  Q  *  G  *  E  D  L  V  E  L  L  S  R  E  F  C  *  Y  A  F  *  *  T  T  T  R  D  R  G  D  Q  S  K  G  T  N  F  S  L  P  A  R  *  P  H  *  F  L  P  F  E  E  *  E   : G  N  E  P  T  G  V  G  R  *  S  P  G  *  F  E  T  C  H  W  R  I  R  Q  G  *  E  *  C  *  *  A  K  Q  G  T  A  A  Y  R  I  *  *  S  C  L  C  *  S  I  C  N  S  S  S  L  *  H  C  P  R  C  Y  R  D  K  S  N  Q  R  D  T  S  E  F  V  F  G  T  G  N  H  G  *  S  *  A  R  *  A  S  T  E  L  Y  Y  S  S  *  V  K  Q  A  D  K  S  *  Y  Q  G  V  F  H  R  D  W  S  D  F  W  *  H  C  L  *  V  F  K  C  A  R  A  N  C  C  C  A  Q  *  Y  P  Y  *  H  H  G  L  H  L  S  C  C  L  Q  *  G  C  F  *  N  Y  V  G  *  I  *  V  G  K  Q   : G  C  C  Q  H  C  H  S  R  *  K  R  I  S  *  P  Y  Y  Q  I  N  Q  H  E  V  S  D  C  T  :  I  C  S  G  R  *  M  W  I  P  C  C  *  S  L  C  K  E  C  V  W  R  G  C  F  G  E  F  E  H  *  K  A  I  R  W  *  A  E  W  L  Y  *  N  K  K  Q  N  T  R  N  C  S  *  L  G  R  Q  N  N  T  Q  A  E  G  R  Q  L  I  L  L  C  C  Y  G  P  L  L  D  S  K   : G  H  *  N  M  K  L  R  L  L  H  I  S  H  L  *  L  G  G  V  L  G  L  L  S  *  K  P  V  E  I  V  L  L  H  L  L  L  D  S  D  P  R  N  S  S  I  L  L  F  F  E  D  I  F  W  *  R  K  L  E  R  E  *  C  C  F  I  S  V  L  *  V  N  *  I  W  Y  K  S  L  F  A  C  Y  F  L  L  T  S  N  S  *  F  P  F  F  F  L  *  T  K  V  N  S  V  S  I  A  I  L  Y  I  E  I  L  G   </first_frame>
            <second_frame>  V  S  E  E  S  E  A  A  D  S  S  K  K  T  Q  Q  A  N  S  I  T  T  L  S  S  R  R  P  A  V  L  A  D  G  T  Y  A  T  Q  S  A  A  S  E  T  A  F  S  P  P  T  V  V  Q  G  S  L  T  T  G  N  L  R  S  L  L  L  T  G  D  F  F  L  G  A  V  V  A  C  T  L  T  K  L  I  L  R  L  E  E  V  Q  P  S  K  L  E  L  N  K  A  T  T  N  A  L  L  I  M  V  S  M  I  Q  L  G  Q  S  H  A  L  P  H  P  I  D  N  D  S  H  D  R  I  V  L  C  I  R  L  L  C  N  T  G  N  E  V  R  K  I  W  L  S  S  C  R  E  S  F  V  N  M  L  S  D  K  Q  L  R  E  T  E  E  I  K  A  K  A  Q  I  S  R  S  Q  P  D  D  L  I  D  F  Y  H  L  K  S  R  K  :  G  M  S  Q  L  E  L  E  D  E  V  Q  D  D  L  K  R  A  T  G  E  F  V  K  D  E  N  D  A  N  K  L  S  R  V  L  Q  L  T  G  F  S  D  P  V  Y  A  E  A  Y  V  T  V  H  H  Y  D  I  V  L  D  V  T  V  I  N  R  T  K  E  T  L  Q  N  L  C  L  E  L  A  T  M  G  D  L  K  L  V  E  R  P  Q  N  Y  T  I  A  P  E  S  S  K  Q  I  K  A  N  I  K  V  S  S  T  E  T  G  V  I  F  G  N  I  V  Y  E  S  S  N  V  L  E  R  T  V  V  V  L  N  D  I  H  I  D  I  M  D  Y  I  S  P  A  V  C  S  E  A  A  F  R  T  M  W  A  E  F  E  W  E  N  K  :  V  A  V  N  T  V  I  Q  D  E  K  G  F  L  D  H  I  I  K  S  T  N  M  K  C  L  T  A  P :   S  A  L  E  D  E  C  G  F  L  A  A  N  L  Y  A  K  S  V  F  G  E  D  A  L  V  N  L  S  I  E  K  Q  S  D  G  K  L  S  G  Y  I  R  I  R  S  K  T  Q  G  I  A  L  S  L  G  D  K  I  T  L  K  Q  K  G  G  N  *  S  Y  C  V  V  M  V  L  S  *  T  A  K  :  V  I  K  T  *  N  *  D  S  F  T  S  P  I  C  S  L  E  E  C  W  G  Y  *  V  K  N  L  *  K  L  Y  Y  C  T  Y  F  *  I  R  I  R  E  I  R  A  F  Y  S  S  L  R  T  F  F  G  R  E  N  W  K  E  S  S  A  A  L  S  L  C  C  K  L  T  E  F  G  T  S  H  S  L  L  V  T  F  C  *  L  P  I  P  D  F  H  F  F  F  C  K  Q  R  S  T  Q  F  P  L  P  Y  Y  I  L  K  F  *  A  </second_frame>
            <third_frame>   F  L  R  K  V  K  L  L  I  L  Q  K  R  L  S  K  Q  T  P  L  L  L  C  H  L  E  D  Q  L  Y  L  L  M  G  H  M  L  L  K  V  L  H  L  K  L  L  S  L  P  R  Q  L  F  K  D  L  *  P  L  E  T  *  D  P  S  F  S  L  V  I  S  S  W  E  Q  L  L  L  V  H  *  L  S  S  F  *  G  W  K  K  F  S  H  Q  N  L  N  *  T  K  L  Q  Q  M  H  Y  *  S  W  S  Q  *  Y  S  *  G  S  L  M  L  F  L  T  Q  L  T  M  I  L  M  T  E  *  F  F  A  *  D  C  S  V  I  R  A  M  R  L  G  R  S  G  *  A  L  V  A  R  V  L  L  I  C  F  L  I  N  N  Y  E  R  Q  R  R  S  K  Q  R  H  K  F  L  A  P  S  Q  M  T  S  L  I  S  T  I  *  R  V  G  R :   E  *  A  N  W  S  W  K  M  K  S  R  M  I  *  N  V  P  L  E  N  S  S  R  M  R  M  M  L  I  S  *  A  G  Y  C  S  L  Q  D  L  V  I  L  F  M  L  K  H  M  *  Q  F  I  I  M  T  L  S  *  M  L  P  *  *  I  E  P  K  R  H  F  R  I  C  V  W  N  W  Q  P  W  V  I  L  S  S  L  S  V  H  R  I  I  L  *  L  L  S  Q  A  S  R  *  K  L  I  S  R  C  L  P  P  R  L  E  *  F  L  V  T  L  S  M  S  L  Q  M  C  S  S  E  L  L  L  C  S  M  I  S  I  L  T  S  W  I  T  S  L  L  L  F  A  V  R  L  L  L  E  L  C  G  L  N  L  S  G  K  T  R :   L  L  S  T  L  S  F  K  M  K  K  D  F  L  T  I  L  S  N  Q  P  T  *  S  V  *  L  H   : H  L  L  W  K  M  N  V  D  S  L  L  L  I  F  M  Q  R  V  C  L  E  R  M  L  W  *  I  *  A  L  K  S  N  Q  M  V  S  *  V  V  I  L  E  *  E  A  K  H  K  E  L  L  L  A  W  E  T  K  *  H  S  S  R  R  E  A  I  D  L  I  V  L  L  W  S  S  P  R  Q  Q  R :   S  L  K  H  E  T  E  T  P  S  H  L  P  F  V  A  W  R  S  A  G  V  I  E  L  K  T  C  R  N  C  I  T  A  L  T  F  R  F  G  S  A  K  F  E  H  F  T  L  L  *  G  H  F  L  V  E  K  I  G  K  R  V  V  L  L  Y  L  C  V  V  S  *  L  N  L  V  Q  V  T  L  C  L  L  L  S  V  N  F  Q  F  L  I  S  I  F  F  F  V  N  K  G  Q  L  S  F  H  C  H  I  I  Y  *  N  F  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58240" stop="58833"/>
                    <exon start="60658" stop="61167"/>
                    <exon start="61661" stop="61746"/>
                    <exon start="62446" stop="62650"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSEESEAADSSKKTQQANSITTLSSRRPAVLADGTYATQSAASETAFSPPTVVQGSLTTGNLRSLLLTGDFFLGAVVACTLTKLILRLEEVQPSKLELNKATTNALLIMVSMIQLGQSHALPHPIDNDSHDRIVLCIRLLCNTGNEVRKIWLSSCRESFVNMLSDKQLRETEEIKAKAQISRSQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKDENDANKLSRVLQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTIAPESSKQIKANIKVSSTETGVIFGNIVYESSNVLERTVVVLNDIHIDIMDYISPAVCSEAAFRTMWAEFEWENKVAVNTVIQDEKGFLDHIIKSTNMKCLTAPSALEDECGFLAANLYAKSVFGEDALVNLSIEKQSDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62625" stop="62689"/>
                    <exon start="63097" stop="63250"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSSRREAIDLIVLLWSSPRQQRSLKHETETPSHLPFVAWRSAGVIELKTCRNCITALTFRFGSAKFEHFTLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="65371" PGL_stop="64773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65371" e_stop="64773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="65371" e_stop="64773" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65371" stop="64773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65345" stop="64792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTGTTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTCCCTCCAACCTTCAAGTTGCAAATATTTTTTTGTCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAGTCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</gDNA_template>
            <first_frame> K  I  V  L  S  H  I  Y  L  F  K  L  L  I  L  S  P  I  *  F  F  F  S  L  M  V  I  F  S  D  F  P  P  T  F  K  L  Q  I  F  F  C  H  I  F  W  L  F  F  *  S  K  I  E  S  T  R  I  P  L  I  K  V  S  L  I  F  I  L  F  S  D  F  F  S  N  F  I  F  V  *  V  L  K  K  C  C  L  Y  F  S  I  S  V  M  I  Y  S  P  M  A  E  S  K  R  L  T  R  G  I  H  L  N  Q  P  I  S  G  D  F  S  S  F  N  L  F  I  T  *  Q  I  V  Y  N  V  *  S  A  A  K  M  R  E  E  R  G  *  E  H  L  Q  D  S  L  V  C  K  T  F  L  K  F  R  T  Q  M  *  N  L  C  L  L  V  R  I  L  K  K  T  T  K  I  A  N  N  F  L  L  V  C  F  V  F  I  V  L  F  *  N   </first_frame>
            <second_frame>  K  L  F  S  L  I  F  I  F  S  N  C  *  F  S  L  P  F  N  F  F  S  L  L  W  L  S  F  L  I  S  L  Q  P  S  S  C  K  Y  F  F  V  I  Y  F  G  C  F  F  N  P  K  L  N  Q  Q  E  S  L  *  L  R  Y  L  *  S  L  S  Y  F  Q  I  S  F  L  I  L  F  L  F  K  S  *  K  N  V  V  C  I  F  Q  F  P  L  *  F  T  L  Q  W  L  N  P  R  G  L  L  E  V  F  I  L  I  N  Q  F  L  V  I  F  H  P  L  I  Y  L  L  L  N  K  *  C  I  M  Y  D  P  L  L  K  *  G  K  K  E  G  K  N  I  Y  K  T  H  W  C  A  K  P  S  S  N  S  E  R  K  C  K  I  F  V  Y  S  *  G  S  *  K  R  R  R  R  S  R  T  I  F  Y  *  F  V  L  Y  L  *  F  F  F  R  I  </second_frame>
            <third_frame>   N  C  S  L  S  Y  L  S  F  Q  I  V  N  S  L  S  H  L  I  F  F  L  S  Y  G  Y  L  F  *  F  P  S  N  L  Q  V  A  N  I  F  L  S  Y  I  L  V  V  F  L  I  Q  N  *  I  N  K  N  P  F  D  *  G  I  S  N  L  Y  P  I  F  R  F  L  F  *  F  Y  F  C  L  S  L  K  K  M  L  F  V  F  F  N  F  R  Y  D  L  L  S  N  G  *  I  Q  E  A  Y  *  R  Y  S  S  *  S  T  N  F  W  *  F  F  I  L  *  F  I  Y  Y  L  T  N  S  V  *  C  M  I  R  C  *  N  E  G  R  K  R  V  R  T  F  T  R  L  I  G  V  Q  N  L  P  Q  I  Q  N  A  N  V  K  S  L  S  T  R  E  D  L  E  K  D  D  E  D  R  E  Q  F  S  I  S  L  F  C  I  Y  S  S  F  L  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="83807" PGL_stop="71851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83807" e_stop="83689"/>
            <exon e_start="82943" e_stop="82812"/>
            <exon e_start="79466" e_stop="79347"/>
            <exon e_start="79030" e_stop="78944"/>
            <exon e_start="78666" e_stop="78547"/>
            <exon e_start="78412" e_stop="78295"/>
            <exon e_start="78189" e_stop="78064"/>
            <exon e_start="75188" e_stop="75054"/>
            <exon e_start="74115" e_stop="73967"/>
            <exon e_start="73861" e_stop="73721"/>
            <exon e_start="73395" e_stop="73084"/>
            <exon e_start="72698" e_stop="72580"/>
            <exon e_start="72347" e_stop="72086"/>
            <exon e_start="71879" e_stop="71851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.532" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.086" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.992" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.711" e_score="0.975"/>
          <exon-intron don_prob="0.765" acc_prob="0.000" e_score="0.985"/>
          <exon-only e_score="0.655"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83807" e_stop="83689" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83688" i_stop="82944" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82943" e_stop="82812" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.866" acc_prob="0.988">
            <gDNA_intron_boundary i_start="82811" i_stop="79467" i_length="3345"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79466" e_stop="79347" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="79346" i_stop="79031" i_length="316"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79030" e_stop="78944" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.907" acc_prob="0.934">
            <gDNA_intron_boundary i_start="78943" i_stop="78667" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78666" e_stop="78547" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.967" acc_prob="0.960">
            <gDNA_intron_boundary i_start="78546" i_stop="78413" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78412" e_stop="78295" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.948" acc_prob="0.823">
            <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78189" e_stop="78064" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.990">
            <gDNA_intron_boundary i_start="78063" i_stop="75189" i_length="2875"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="75188" e_stop="75054" e_length="135"/>
          </exon>
          <intron i_serial="8" don_prob="0.532" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75053" i_stop="74116" i_length="938"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74115" e_stop="73967" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.086" acc_prob="0.718">
            <gDNA_intron_boundary i_start="73966" i_stop="73862" i_length="105"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="73861" e_stop="73721" e_length="141"/>
          </exon>
          <intron i_serial="10" don_prob="0.937" acc_prob="0.997">
            <gDNA_intron_boundary i_start="73720" i_stop="73396" i_length="325"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="73395" e_stop="73084" e_length="312"/>
          </exon>
          <intron i_serial="11" don_prob="0.799" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385"/>
          </intron>
          <exon e_serial="12" e_score="0.975">
            <gDNA_exon_boundary e_start="72698" e_stop="72580" e_length="119"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.711">
            <gDNA_intron_boundary i_start="72579" i_stop="72348" i_length="232"/>
          </intron>
          <exon e_serial="13" e_score="0.985">
            <gDNA_exon_boundary e_start="72347" e_stop="72086" e_length="262"/>
          </exon>
          <intron i_serial="13" don_prob="0.765" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72085" i_stop="71880" i_length="206"/>
          </intron>
          <exon e_serial="14" e_score="0.655">
            <gDNA_exon_boundary e_start="71879" e_stop="71851" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83807" stop="83689"/>
              <exon start="82943" stop="82812"/>
              <exon start="79466" stop="79347"/>
              <exon start="79030" stop="78944"/>
              <exon start="78666" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79017" stop="78944"/>
              <exon start="78666" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78574" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="73967"/>
              <exon start="73861" stop="73721"/>
              <exon start="73395" stop="73354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78574" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="73967"/>
              <exon start="73861" stop="73746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78572" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="74037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78341" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="73967"/>
              <exon start="73861" stop="73847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74080" stop="73967"/>
              <exon start="73861" stop="73721"/>
              <exon start="73395" stop="73235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73395" stop="73084"/>
              <exon start="72698" stop="72580"/>
              <exon start="72347" stop="72086"/>
              <exon start="71879" stop="71851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260634" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72332" stop="72086"/>
              <exon start="71879" stop="71851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260215" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCACCTGCTTACAAGAAAAAGAACCTTAGTATATCGGACCAAAGTATATCAGCAGTGACTTTAAAAAAGATATGGGATGAGTTTCCTTTAAGTTCGAATCATTGCTTGTCAGAGAAG : GACGGTGACCGATATTTCATGCTGAATATTGTAATTACAGAAATATTTTTGCATCTAAGTTATGGGTCCAAATTATCACCTGGGTTGCTGGAAAGATTTCTGGAGTTCATTGAGAGTTCTCTATCTGAAAAG : ATTCACGATGGCAGAGAGGCTGGTAAAGTACATCATGAGAAGCATTTAATTTCACTGGTTGCTTTTATCCCAAAACTCATTATGCAAGTGTCTGTTGCTTGGAAGTCACGTATCCTTCAG : GCTTTTACGAAAGTTTTTGAGAATTGCAGTGCAGAGTCCTCAATGAAATTGGCTTGCCTTTCTGTTGTTGAAGAAATGCTACTTCCT : GAGCAGAATTGCCTTTATCTGGATCCCAAAGATCTTGAAATATTAAATCATAGTACATGGATAGGGGAGCTTCCAAAGCTGTTAGTCCTCTTAGGTGATAAACACCCATTACATTCAAAG : GCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATG : AAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATAT : GTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTG : AGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATA : TCTCAGAAACAACCAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCCGGAGTACTTCTTAGATGTTGTGAAT : AACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATTCGACAGACAAGGGTTTATTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG : TCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAG : ACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAG : AAATAAGAAATTAAATATAAACGGAGTCG</gDNA_template>
            <first_frame> W  H  L  L  T  R  K  R  T  L  V  Y  R  T  K  V  Y  Q  Q  *  L  *  K  R  Y  G  M  S  F  L  *  V  R  I  I  A  C  Q  R  R :   T  V  T  D  I  S  C  *  I  L  *  L  Q  K  Y  F  C  I  *  V  M  G  P  N  Y  H  L  G  C  W  K  D  F  W  S  S  L  R  V  L  Y  L  K  R :   F  T  M  A  E  R  L  V  K  Y  I  M  R  S  I  *  F  H  W  L  L  L  S  Q  N  S  L  C  K  C  L  L  L  G  S  H  V  S  F  R :   L  L  R  K  F  L  R  I  A  V  Q  S  P  Q  *  N  W  L  A  F  L  L  L  K  K  C  Y  F  L :   S  R  I  A  F  I  W  I  P  K  I  L  K  Y  *  I  I  V  H  G  *  G  S  F  Q  S  C  *  S  S  *  V  I  N  T  H  Y  I  Q  R :   L  C  Y  V  F  S  F  V  L  D  K  L  L  I  *  A  *  H  R  Q  K  N  M  K  I  C  S  T  L  *  E  L  F  T  A  P  T  P  M  :  K  L  *  A  M  V  H  S  *  G  F  L  E  I  F  R  S  S  L  Y  A  V  C  I  T  S  L  S  W  T  R  *  Y  S  S  L  *  P  H  A  A  Y  :  V  T  S  W  N  H  L  S  F  S  E  S  W  K  F  Y  T  Q  P  T  R  L  A  I  S  R  L  Q  I  T  L  A  S  S  S  H  C  F  H  A  F  K  F  I  L  :  R  K  L  I  L  W  R  S  T  K  G  S  Q  I  V  E  P  S  K  Q  L  L  G  L  F  V  L  G  C  R  R  *  E  M  M  C  S  F  C  R  C  W  R  K  L  F  L  M  R  Y :   L  R  N  N  Q  *  T  T  F  M  V  L  *  D  C  L  S  H  *  T  Q  N  L  L  D  F  L  K  K  L  S  I  D  *  A  R  S  F  R  S  T  S  *  M  L  *  I :   T  F  Q  R  K  M  T  S  L  L  N  L  *  F  D  R  Q  G  F  I  T  S  F  L  V  F  S  Y  L  I  G  A  T  C  C  *  I  R  Y  W  K  *  W  D  H  L  S  G  E  M  C  L  I  R  K  V  P  W  Q  R  I  I  Q  A  E  F  F  L  *  S  L  F  S  Y  L  C  L  E  I  L  K  C  R  N  F  F  Y  H  A  R  H  R  L  E  I  Y  *  K  A  C  T  D  S  S :   L  L  R  I  L  Q  *  Q  L  K  K  D  I  K  S  E  V  L  M  T  Y  *  L  Q  P  L  A  H  W  N  T  T  N  L  E  *  C  I  *   : D  S  M  *  F  V  V  K  K  E  D  R  E  C  N  R  H  L  I  I  F  D  D  T  S  *  A  G  K  *  D  F  C  *  A  S  S  I  T  V  T  K  T  *  S  F  C  S  T  S  S  I  S  A  M  V  T  F  N  Y  D  H  *  I  E  I  V  M  A  Y  G  *  N  I  Q  L  Q  P  L  K  *  H  Y  N  Y  C  L  R :   N  K  K  L  N  I  N  G  V  </first_frame>
            <second_frame>  G  T  C  L  Q  E  K  E  P  *  Y  I  G  P  K  Y  I  S  S  D  F  K  K  D  M  G  *  V  S  F  K  F  E  S  L  L  V  R  E   : G  R  *  P  I  F  H  A  E  Y  C  N  Y  R  N  I  F  A  S  K  L  W  V  Q  I  I  T  W  V  A  G  K  I  S  G  V  H  *  E  F  S  I  *  K   : D  S  R  W  Q  R  G  W  *  S  T  S  *  E  A  F  N  F  T  G  C  F  Y  P  K  T  H  Y  A  S  V  C  C  L  E  V  T  Y  P  S   : G  F  Y  E  S  F  *  E  L  Q  C  R  V  L  N  E  I  G  L  P  F  C  C  *  R  N  A  T  S   : *  A  E  L  P  L  S  G  S  Q  R  S  *  N  I  K  S  *  Y  M  D  R  G  A  S  K  A  V  S  P  L  R  *  *  T  P  I  T  F  K   : G  C  V  T  S  S  A  S  C  W  T  N  C  *  F  K  H  D  T  G  K  R  I  *  K  Y  A  V  L  Y  K  S  F  L  L  H  L  L  Q  * :   N  C  K  L  W  S  I  H  E  A  S  *  R  Y  S  G  A  L  C  M  L  S  V  L  L  P  F  L  G  Q  G  D  T  R  V  F  S  L  M  L  H  M :   S  R  V  G  T  I  Y  P  F  P  S  H  G  S  S  T  L  S  L  Q  G  W  P  Y  P  D  C  R  L  H  *  L  L  H  H  I  A  F  T  L  S  S  L  S  * :   E  N  *  S  Y  G  E  A  R  R  E  V  K  S  W  N  L  Q  S  S  C  *  G  C  L  F  L  V  V  A  D  R  R  *  C  A  R  F  A  D  A  G  E  N  C  S  *  *  D   : I  S  E  T  T  S  R  Q  H  L  W  F  Y  K  I  A  Y  H  T  R  L  K  T  Y  S  T  F  *  R  N  Y  Q  *  T  K  R  G  P  S  G  V  L  L  R  C  C  E   : *  H  S  R  G  R  *  R  V  Y  *  I  F  D  S  T  D  K  G  L  L  P  P  S  L  F  F  P  I  *  *  E  Q  H  A  V  K  S  D  I  G  S  D  G  I  I  Y  Q  G  K  C  A  S  F  E  R  C  L  G  K  G  S  F  K  Q  N  S  F  C  S  L  C  S  L  T  C  A  W  R  Y  *  N  A  E  T  S  S  I  M  Q  D  T  D  *  K  Y  T  R  K  H  A  Q  T  R   : V  F  *  G  Y  Y  N  D  N  *  R  K  T  *  N  P  K  C  L  *  H  T  D  C  S  R  *  H  I  G  I  R  L  T  W  N  S  V  S  E  :  T  Q  C  S  S  W  *  R  K  R  I  E  N  A  I  V  I  *  L  S  L  M  T  P  V  E  R  V  S  R  T  S  V  E  P  H  R  S  Q  *  Q  K  R  R  V  S  A  Q  P  P  R  S  V  R  W  L  H  S  I  M  T  I  E  L  K  L  *  W  P  M  V  K  T  F  S  Y  N  H  *  N  D  I  I  I  I  V  *   : E  I  R  N  *  I  *  T  E  S </second_frame>
            <third_frame>   A  P  A  Y  K  K  K  N  L  S  I  S  D  Q  S  I  S  A  V  T  L  K  K  I  W  D  E  F  P  L  S  S  N  H  C  L  S  E  K  :  D  G  D  R  Y  F  M  L  N  I  V  I  T  E  I  F  L  H  L  S  Y  G  S  K  L  S  P  G  L  L  E  R  F  L  E  F  I  E  S  S  L  S  E  K  :  I  H  D  G  R  E  A  G  K  V  H  H  E  K  H  L  I  S  L  V  A  F  I  P  K  L  I  M  Q  V  S  V  A  W  K  S  R  I  L  Q  :  A  F  T  K  V  F  E  N  C  S  A  E  S  S  M  K  L  A  C  L  S  V  V  E  E  M  L  L  P  :  E  Q  N  C  L  Y  L  D  P  K  D  L  E  I  L  N  H  S  T  W  I  G  E  L  P  K  L  L  V  L  L  G  D  K  H  P  L  H  S  K  :  A  V  L  R  L  Q  L  R  V  G  Q  T  A  N  L  S  M  T  P  A  K  E  Y  E  N  M  Q  Y  F  I  R  A  F  Y  C  T  Y  S  N   : E  T  V  S  Y  G  P  F  M  R  L  P  R  D  I  Q  E  L  S  V  C  C  L  Y  Y  F  P  F  L  D  K  V  I  L  E  S  L  A  S  C  C  I   : C  H  E  L  E  P  F  I  L  F  R  V  M  E  V  L  H  S  A  Y  K  A  G  H  I  Q  I  A  D  Y  I  S  F  F  I  T  L  L  S  R  F  Q  V  Y  P   : E  K  I  D  P  M  E  K  H  E  G  K  S  N  R  G  T  F  K  A  V  V  R  A  V  C  S  W  L  S  Q  I  G  D  D  V  L  V  L  Q  M  L  E  K  I  V  L  D  E  I  :  S  Q  K  Q  P  V  D  N  I  Y  G  F  I  R  L  L  I  T  L  D  S  K  P  T  R  L  S  E  E  T  I  N  R  L  S  E  V  L  P  E  Y  F  L  D  V  V  N  :  N  I  P  E  E  D  D  E  S  T  K  S  L  I  R  Q  T  R  V  Y  Y  L  L  P  C  F  F  L  F  D  R  S  N  M  L  L  N  Q  I  L  E  V  M  G  S  F  I  R  G  N  V  P  H  S  K  G  A  L  A  K  D  H  S  S  R  I  L  S  V  V  S  V  L  L  L  V  L  G  D  I  K  M  Q  K  L  L  L  S  C  K  T  Q  I  R  N  I  L  E  S  M  H  R  L  E  :  S  S  E  D  I  T  M  T  I  E  E  R  H  K  I  R  S  A  Y  D  I  L  T  A  A  V  S  T  L  E  Y  D  *  P  G  I  V  Y  L  R :   L  N  V  V  R  G  K  E  R  G  S  R  M  Q  S  S  S  N  Y  L  *  *  H  Q  L  S  G  *  V  G  L  L  L  S  L  I  D  H  S  N  K  N  V  E  F  L  L  N  L  L  D  Q  C  D  G  Y  I  Q  L  *  P  L  N  *  N  C  N  G  L  W  L  K  H  S  V  T  T  I  E  M  T  L  *  L  L  S  E  :  K  *  E  I  K  Y  K  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83805" stop="83689"/>
                    <exon start="82943" stop="82812"/>
                    <exon start="79466" stop="79347"/>
                    <exon start="79030" stop="78944"/>
                    <exon start="78666" stop="78547"/>
                    <exon start="78412" stop="78295"/>
                    <exon start="78189" stop="78064"/>
                    <exon start="75188" stop="75054"/>
                    <exon start="74115" stop="73967"/>
                    <exon start="73861" stop="73721"/>
                    <exon start="73395" stop="73084"/>
                    <exon start="72698" stop="72600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1653</number_coding_nucleotides>
                  <number_encoded_amino_acids>551</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APAYKKKNLSISDQSISAVTLKKIWDEFPLSSNHCLSEKDGDRYFMLNIVITEIFLHLSYGSKLSPGLLERFLEFIESSLSEKIHDGREAGKVHHEKHLISLVAFIPKLIMQVSVAWKSRILQAFTKVFENCSAESSMKLACLSVVEEMLLPEQNCLYLDPKDLEILNHSTWIGELPKLLVLLGDKHPLHSKAVLRLQLRVGQTANLSMTPAKEYENMQYFIRAFYCTYSNETVSYGPFMRLPRDIQELSVCCLYYFPFLDKVILESLASCCICHELEPFILFRVMEVLHSAYKAGHIQIADYISFFITLLSRFQVYPEKIDPMEKHEGKSNRGTFKAVVRAVCSWLSQIGDDVLVLQMLEKIVLDEISQKQPVDNIYGFIRLLITLDSKPTRLSEETINRLSEVLPEYFLDVVNNIPEEDDESTKSLIRQTRVYYLLPCFFLFDRSNMLLNQILEVMGSFIRGNVPHSKGALAKDHSSRILSVVSVLLLVLGDIKMQKLLLSCKTQIRNILESMHRLESSEDITMTIEERHKIRSAYDILTAAVSTLEYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83807" e_stop="83689"/>
            <exon e_start="82943" e_stop="82812"/>
            <exon e_start="79466" e_stop="79347"/>
            <exon e_start="79030" e_stop="78944"/>
            <exon e_start="78666" e_stop="78547"/>
            <exon e_start="78412" e_stop="78295"/>
            <exon e_start="78189" e_stop="78064"/>
            <exon e_start="75188" e_stop="75054"/>
            <exon e_start="74115" e_stop="73967"/>
            <exon e_start="73861" e_stop="73721"/>
            <exon e_start="73395" e_stop="73084"/>
            <exon e_start="72698" e_stop="72580"/>
            <exon e_start="72411" e_stop="71948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.532" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.086" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.992" e_score="0.988"/>
          <exon-intron don_prob="0.997" acc_prob="0.466" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83807" e_stop="83689" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83688" i_stop="82944" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82943" e_stop="82812" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.866" acc_prob="0.988">
            <gDNA_intron_boundary i_start="82811" i_stop="79467" i_length="3345"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79466" e_stop="79347" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="79346" i_stop="79031" i_length="316"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79030" e_stop="78944" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.907" acc_prob="0.934">
            <gDNA_intron_boundary i_start="78943" i_stop="78667" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78666" e_stop="78547" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.967" acc_prob="0.960">
            <gDNA_intron_boundary i_start="78546" i_stop="78413" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78412" e_stop="78295" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.948" acc_prob="0.823">
            <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78189" e_stop="78064" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.990">
            <gDNA_intron_boundary i_start="78063" i_stop="75189" i_length="2875"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="75188" e_stop="75054" e_length="135"/>
          </exon>
          <intron i_serial="8" don_prob="0.532" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75053" i_stop="74116" i_length="938"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74115" e_stop="73967" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.086" acc_prob="0.718">
            <gDNA_intron_boundary i_start="73966" i_stop="73862" i_length="105"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="73861" e_stop="73721" e_length="141"/>
          </exon>
          <intron i_serial="10" don_prob="0.937" acc_prob="0.997">
            <gDNA_intron_boundary i_start="73720" i_stop="73396" i_length="325"/>
          </intron>
          <exon e_serial="11" e_score="0.988">
            <gDNA_exon_boundary e_start="73395" e_stop="73084" e_length="312"/>
          </exon>
          <intron i_serial="11" don_prob="0.799" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="72698" e_stop="72580" e_length="119"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.466">
            <gDNA_intron_boundary i_start="72579" i_stop="72412" i_length="168"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="72411" e_stop="71948" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83807" stop="83689"/>
              <exon start="82943" stop="82812"/>
              <exon start="79466" stop="79347"/>
              <exon start="79030" stop="78944"/>
              <exon start="78666" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79017" stop="78944"/>
              <exon start="78666" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78574" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="73967"/>
              <exon start="73861" stop="73721"/>
              <exon start="73395" stop="73354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78574" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="73967"/>
              <exon start="73861" stop="73746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78572" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="74037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78341" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="73967"/>
              <exon start="73861" stop="73847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74080" stop="73967"/>
              <exon start="73861" stop="73721"/>
              <exon start="73395" stop="73235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73323" stop="73084"/>
              <exon start="72698" stop="72580"/>
              <exon start="72411" stop="71948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="73084"/>
              <exon start="72698" stop="72580"/>
              <exon start="72411" stop="71948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCACCTGCTTACAAGAAAAAGAACCTTAGTATATCGGACCAAAGTATATCAGCAGTGACTTTAAAAAAGATATGGGATGAGTTTCCTTTAAGTTCGAATCATTGCTTGTCAGAGAAG : GACGGTGACCGATATTTCATGCTGAATATTGTAATTACAGAAATATTTTTGCATCTAAGTTATGGGTCCAAATTATCACCTGGGTTGCTGGAAAGATTTCTGGAGTTCATTGAGAGTTCTCTATCTGAAAAG : ATTCACGATGGCAGAGAGGCTGGTAAAGTACATCATGAGAAGCATTTAATTTCACTGGTTGCTTTTATCCCAAAACTCATTATGCAAGTGTCTGTTGCTTGGAAGTCACGTATCCTTCAG : GCTTTTACGAAAGTTTTTGAGAATTGCAGTGCAGAGTCCTCAATGAAATTGGCTTGCCTTTCTGTTGTTGAAGAAATGCTACTTCCT : GAGCAGAATTGCCTTTATCTGGATCCCAAAGATCTTGAAATATTAAATCATAGTACATGGATAGGGGAGCTTCCAAAGCTGTTAGTCCTCTTAGGTGATAAACACCCATTACATTCAAAG : GCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATG : AAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATAT : GTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTG : AGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATA : TCTCAGAAACAACCAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCCGGAGTACTTCTTAGATGTTGTGAAT : AACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATTCGACAGACAAGGGTTTATTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG : TCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAG : TGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGACATGGGAAACCTTATATTTGACTCTGGTTGTAAGTTGGACTCTTATACTTACAACTTTGTCAATGAAACACAATATACTAAACTA</gDNA_template>
            <first_frame> W  H  L  L  T  R  K  R  T  L  V  Y  R  T  K  V  Y  Q  Q  *  L  *  K  R  Y  G  M  S  F  L  *  V  R  I  I  A  C  Q  R  R :   T  V  T  D  I  S  C  *  I  L  *  L  Q  K  Y  F  C  I  *  V  M  G  P  N  Y  H  L  G  C  W  K  D  F  W  S  S  L  R  V  L  Y  L  K  R :   F  T  M  A  E  R  L  V  K  Y  I  M  R  S  I  *  F  H  W  L  L  L  S  Q  N  S  L  C  K  C  L  L  L  G  S  H  V  S  F  R :   L  L  R  K  F  L  R  I  A  V  Q  S  P  Q  *  N  W  L  A  F  L  L  L  K  K  C  Y  F  L :   S  R  I  A  F  I  W  I  P  K  I  L  K  Y  *  I  I  V  H  G  *  G  S  F  Q  S  C  *  S  S  *  V  I  N  T  H  Y  I  Q  R :   L  C  Y  V  F  S  F  V  L  D  K  L  L  I  *  A  *  H  R  Q  K  N  M  K  I  C  S  T  L  *  E  L  F  T  A  P  T  P  M  :  K  L  *  A  M  V  H  S  *  G  F  L  E  I  F  R  S  S  L  Y  A  V  C  I  T  S  L  S  W  T  R  *  Y  S  S  L  *  P  H  A  A  Y  :  V  T  S  W  N  H  L  S  F  S  E  S  W  K  F  Y  T  Q  P  T  R  L  A  I  S  R  L  Q  I  T  L  A  S  S  S  H  C  F  H  A  F  K  F  I  L  :  R  K  L  I  L  W  R  S  T  K  G  S  Q  I  V  E  P  S  K  Q  L  L  G  L  F  V  L  G  C  R  R  *  E  M  M  C  S  F  C  R  C  W  R  K  L  F  L  M  R  Y :   L  R  N  N  Q  *  T  T  F  M  V  L  *  D  C  L  S  H  *  T  Q  N  L  L  D  F  L  K  K  L  S  I  D  *  A  R  S  F  R  S  T  S  *  M  L  *  I :   T  F  Q  R  K  M  T  S  L  L  N  L  *  F  D  R  Q  G  F  I  T  S  F  L  V  F  S  Y  L  I  G  A  T  C  C  *  I  R  Y  W  K  *  W  D  H  L  S  G  E  M  C  L  I  R  K  V  P  W  Q  R  I  I  Q  A  E  F  F  L  *  S  L  F  S  Y  L  C  L  E  I  L  K  C  R  N  F  F  Y  H  A  R  H  R  L  E  I  Y  *  K  A  C  T  D  S  S :   L  L  R  I  L  Q  *  Q  L  K  K  D  I  K  S  E  V  L  M  T  Y  *  L  Q  P  L  A  H  W  N  T  T  N  L  E  *  C  I  *   : V  I  Q  F  A  V  Q  D  E  C  F  N  P  N  D  H  S  L  T  F  C  R  L  N  V  V  R  G  K  E  R  G  S  R  M  Q  S  S  S  N  Y  L  *  *  H  Q  L  S  G  *  V  G  L  L  L  S  L  I  D  H  S  N  K  N  V  E  F  L  L  N  L  L  D  Q  C  D  G  Y  I  Q  L  *  P  L  N  *  N  C  N  G  L  W  L  K  H  S  V  T  T  I  E  M  T  L  *  L  L  S  E  V  Y  I  F  L  L  H  I  *  C  I  F  I  *  I  *  N  D  M  G  N  L  I  F  D  S  G  C  K  L  D  S  Y  T  Y  N  F  V  N  E  T  Q  Y  T  K  L </first_frame>
            <second_frame>  G  T  C  L  Q  E  K  E  P  *  Y  I  G  P  K  Y  I  S  S  D  F  K  K  D  M  G  *  V  S  F  K  F  E  S  L  L  V  R  E   : G  R  *  P  I  F  H  A  E  Y  C  N  Y  R  N  I  F  A  S  K  L  W  V  Q  I  I  T  W  V  A  G  K  I  S  G  V  H  *  E  F  S  I  *  K   : D  S  R  W  Q  R  G  W  *  S  T  S  *  E  A  F  N  F  T  G  C  F  Y  P  K  T  H  Y  A  S  V  C  C  L  E  V  T  Y  P  S   : G  F  Y  E  S  F  *  E  L  Q  C  R  V  L  N  E  I  G  L  P  F  C  C  *  R  N  A  T  S   : *  A  E  L  P  L  S  G  S  Q  R  S  *  N  I  K  S  *  Y  M  D  R  G  A  S  K  A  V  S  P  L  R  *  *  T  P  I  T  F  K   : G  C  V  T  S  S  A  S  C  W  T  N  C  *  F  K  H  D  T  G  K  R  I  *  K  Y  A  V  L  Y  K  S  F  L  L  H  L  L  Q  * :   N  C  K  L  W  S  I  H  E  A  S  *  R  Y  S  G  A  L  C  M  L  S  V  L  L  P  F  L  G  Q  G  D  T  R  V  F  S  L  M  L  H  M :   S  R  V  G  T  I  Y  P  F  P  S  H  G  S  S  T  L  S  L  Q  G  W  P  Y  P  D  C  R  L  H  *  L  L  H  H  I  A  F  T  L  S  S  L  S  * :   E  N  *  S  Y  G  E  A  R  R  E  V  K  S  W  N  L  Q  S  S  C  *  G  C  L  F  L  V  V  A  D  R  R  *  C  A  R  F  A  D  A  G  E  N  C  S  *  *  D   : I  S  E  T  T  S  R  Q  H  L  W  F  Y  K  I  A  Y  H  T  R  L  K  T  Y  S  T  F  *  R  N  Y  Q  *  T  K  R  G  P  S  G  V  L  L  R  C  C  E   : *  H  S  R  G  R  *  R  V  Y  *  I  F  D  S  T  D  K  G  L  L  P  P  S  L  F  F  P  I  *  *  E  Q  H  A  V  K  S  D  I  G  S  D  G  I  I  Y  Q  G  K  C  A  S  F  E  R  C  L  G  K  G  S  F  K  Q  N  S  F  C  S  L  C  S  L  T  C  A  W  R  Y  *  N  A  E  T  S  S  I  M  Q  D  T  D  *  K  Y  T  R  K  H  A  Q  T  R   : V  F  *  G  Y  Y  N  D  N  *  R  K  T  *  N  P  K  C  L  *  H  T  D  C  S  R  *  H  I  G  I  R  L  T  W  N  S  V  S  E  :  *  Y  N  L  L  Y  K  M  N  V  S  I  P  M  I  I  H  *  H  S  A  D  S  M  *  F  V  V  K  K  E  D  R  E  C  N  R  H  L  I  I  F  D  D  T  S  *  A  G  K  *  D  F  C  *  A  S  S  I  T  V  T  K  T  *  S  F  C  S  T  S  S  I  S  A  M  V  T  F  N  Y  D  H  *  I  E  I  V  M  A  Y  G  *  N  I  Q  L  Q  P  L  K  *  H  Y  N  Y  C  L  R  Y  I  Y  S  Y  C  I  F  N  V  S  L  Y  E  F  R  M  T  W  E  T  L  Y  L  T  L  V  V  S  W  T  L  I  L  T  T  L  S  M  K  H  N  I  L  N   </second_frame>
            <third_frame>   A  P  A  Y  K  K  K  N  L  S  I  S  D  Q  S  I  S  A  V  T  L  K  K  I  W  D  E  F  P  L  S  S  N  H  C  L  S  E  K  :  D  G  D  R  Y  F  M  L  N  I  V  I  T  E  I  F  L  H  L  S  Y  G  S  K  L  S  P  G  L  L  E  R  F  L  E  F  I  E  S  S  L  S  E  K  :  I  H  D  G  R  E  A  G  K  V  H  H  E  K  H  L  I  S  L  V  A  F  I  P  K  L  I  M  Q  V  S  V  A  W  K  S  R  I  L  Q  :  A  F  T  K  V  F  E  N  C  S  A  E  S  S  M  K  L  A  C  L  S  V  V  E  E  M  L  L  P  :  E  Q  N  C  L  Y  L  D  P  K  D  L  E  I  L  N  H  S  T  W  I  G  E  L  P  K  L  L  V  L  L  G  D  K  H  P  L  H  S  K  :  A  V  L  R  L  Q  L  R  V  G  Q  T  A  N  L  S  M  T  P  A  K  E  Y  E  N  M  Q  Y  F  I  R  A  F  Y  C  T  Y  S  N   : E  T  V  S  Y  G  P  F  M  R  L  P  R  D  I  Q  E  L  S  V  C  C  L  Y  Y  F  P  F  L  D  K  V  I  L  E  S  L  A  S  C  C  I   : C  H  E  L  E  P  F  I  L  F  R  V  M  E  V  L  H  S  A  Y  K  A  G  H  I  Q  I  A  D  Y  I  S  F  F  I  T  L  L  S  R  F  Q  V  Y  P   : E  K  I  D  P  M  E  K  H  E  G  K  S  N  R  G  T  F  K  A  V  V  R  A  V  C  S  W  L  S  Q  I  G  D  D  V  L  V  L  Q  M  L  E  K  I  V  L  D  E  I  :  S  Q  K  Q  P  V  D  N  I  Y  G  F  I  R  L  L  I  T  L  D  S  K  P  T  R  L  S  E  E  T  I  N  R  L  S  E  V  L  P  E  Y  F  L  D  V  V  N  :  N  I  P  E  E  D  D  E  S  T  K  S  L  I  R  Q  T  R  V  Y  Y  L  L  P  C  F  F  L  F  D  R  S  N  M  L  L  N  Q  I  L  E  V  M  G  S  F  I  R  G  N  V  P  H  S  K  G  A  L  A  K  D  H  S  S  R  I  L  S  V  V  S  V  L  L  L  V  L  G  D  I  K  M  Q  K  L  L  L  S  C  K  T  Q  I  R  N  I  L  E  S  M  H  R  L  E  :  S  S  E  D  I  T  M  T  I  E  E  R  H  K  I  R  S  A  Y  D  I  L  T  A  A  V  S  T  L  E  Y  D  *  P  G  I  V  Y  L  S :   D  T  I  C  C  T  R  *  M  F  Q  S  Q  *  S  F  I  D  I  L  Q  T  Q  C  S  S  W  *  R  K  R  I  E  N  A  I  V  I  *  L  S  L  M  T  P  V  E  R  V  S  R  T  S  V  E  P  H  R  S  Q  *  Q  K  R  R  V  S  A  Q  P  P  R  S  V  R  W  L  H  S  I  M  T  I  E  L  K  L  *  W  P  M  V  K  T  F  S  Y  N  H  *  N  D  I  I  I  I  V  *  G  I  Y  I  L  I  A  Y  L  M  Y  L  Y  M  N  L  E  *  H  G  K  P  Y  I  *  L  W  L  *  V  G  L  L  Y  L  Q  L  C  Q  *  N  T  I  Y  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83805" stop="83689"/>
                    <exon start="82943" stop="82812"/>
                    <exon start="79466" stop="79347"/>
                    <exon start="79030" stop="78944"/>
                    <exon start="78666" stop="78547"/>
                    <exon start="78412" stop="78295"/>
                    <exon start="78189" stop="78064"/>
                    <exon start="75188" stop="75054"/>
                    <exon start="74115" stop="73967"/>
                    <exon start="73861" stop="73721"/>
                    <exon start="73395" stop="73084"/>
                    <exon start="72698" stop="72600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1653</number_coding_nucleotides>
                  <number_encoded_amino_acids>551</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APAYKKKNLSISDQSISAVTLKKIWDEFPLSSNHCLSEKDGDRYFMLNIVITEIFLHLSYGSKLSPGLLERFLEFIESSLSEKIHDGREAGKVHHEKHLISLVAFIPKLIMQVSVAWKSRILQAFTKVFENCSAESSMKLACLSVVEEMLLPEQNCLYLDPKDLEILNHSTWIGELPKLLVLLGDKHPLHSKAVLRLQLRVGQTANLSMTPAKEYENMQYFIRAFYCTYSNETVSYGPFMRLPRDIQELSVCCLYYFPFLDKVILESLASCCICHELEPFILFRVMEVLHSAYKAGHIQIADYISFFITLLSRFQVYPEKIDPMEKHEGKSNRGTFKAVVRAVCSWLSQIGDDVLVLQMLEKIVLDEISQKQPVDNIYGFIRLLITLDSKPTRLSEETINRLSEVLPEYFLDVVNNIPEEDDESTKSLIRQTRVYYLLPCFFLFDRSNMLLNQILEVMGSFIRGNVPHSKGALAKDHSSRILSVVSVLLLVLGDIKMQKLLLSCKTQIRNILESMHRLESSEDITMTIEERHKIRSAYDILTAAVSTLEYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="83807" e_stop="83689"/>
            <exon e_start="82943" e_stop="82812"/>
            <exon e_start="79466" e_stop="79347"/>
            <exon e_start="79030" e_stop="78944"/>
            <exon e_start="78666" e_stop="78547"/>
            <exon e_start="78412" e_stop="78295"/>
            <exon e_start="78189" e_stop="78064"/>
            <exon e_start="75188" e_stop="75054"/>
            <exon e_start="74115" e_stop="73967"/>
            <exon e_start="73861" e_stop="73721"/>
            <exon e_start="73395" e_stop="73084"/>
            <exon e_start="72698" e_stop="72580"/>
            <exon e_start="72411" e_stop="72058"/>
            <exon e_start="71872" e_stop="71859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.532" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.086" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.992" e_score="0.992"/>
          <exon-intron don_prob="0.997" acc_prob="0.466" e_score="0.992"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.983"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83807" e_stop="83689" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83688" i_stop="82944" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82943" e_stop="82812" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.866" acc_prob="0.988">
            <gDNA_intron_boundary i_start="82811" i_stop="79467" i_length="3345"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79466" e_stop="79347" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="79346" i_stop="79031" i_length="316"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79030" e_stop="78944" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.907" acc_prob="0.934">
            <gDNA_intron_boundary i_start="78943" i_stop="78667" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78666" e_stop="78547" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.967" acc_prob="0.960">
            <gDNA_intron_boundary i_start="78546" i_stop="78413" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78412" e_stop="78295" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.948" acc_prob="0.823">
            <gDNA_intron_boundary i_start="78294" i_stop="78190" i_length="105"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78189" e_stop="78064" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.990">
            <gDNA_intron_boundary i_start="78063" i_stop="75189" i_length="2875"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="75188" e_stop="75054" e_length="135"/>
          </exon>
          <intron i_serial="8" don_prob="0.532" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75053" i_stop="74116" i_length="938"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74115" e_stop="73967" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.086" acc_prob="0.718">
            <gDNA_intron_boundary i_start="73966" i_stop="73862" i_length="105"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="73861" e_stop="73721" e_length="141"/>
          </exon>
          <intron i_serial="10" don_prob="0.937" acc_prob="0.997">
            <gDNA_intron_boundary i_start="73720" i_stop="73396" i_length="325"/>
          </intron>
          <exon e_serial="11" e_score="0.992">
            <gDNA_exon_boundary e_start="73395" e_stop="73084" e_length="312"/>
          </exon>
          <intron i_serial="11" don_prob="0.799" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385"/>
          </intron>
          <exon e_serial="12" e_score="0.992">
            <gDNA_exon_boundary e_start="72698" e_stop="72580" e_length="119"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.466">
            <gDNA_intron_boundary i_start="72579" i_stop="72412" i_length="168"/>
          </intron>
          <exon e_serial="13" e_score="0.983">
            <gDNA_exon_boundary e_start="72411" e_stop="72058" e_length="354"/>
          </exon>
          <intron i_serial="13" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72057" i_stop="71873" i_length="185"/>
          </intron>
          <exon e_serial="14" e_score="0.714">
            <gDNA_exon_boundary e_start="71872" e_stop="71859" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83807" stop="83689"/>
              <exon start="82943" stop="82812"/>
              <exon start="79466" stop="79347"/>
              <exon start="79030" stop="78944"/>
              <exon start="78666" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79017" stop="78944"/>
              <exon start="78666" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78574" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="73967"/>
              <exon start="73861" stop="73721"/>
              <exon start="73395" stop="73354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78574" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="73967"/>
              <exon start="73861" stop="73746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78572" stop="78547"/>
              <exon start="78412" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="74037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78341" stop="78295"/>
              <exon start="78189" stop="78064"/>
              <exon start="75188" stop="75054"/>
              <exon start="74115" stop="73967"/>
              <exon start="73861" stop="73847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74080" stop="73967"/>
              <exon start="73861" stop="73721"/>
              <exon start="73395" stop="73235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73336" stop="73084"/>
              <exon start="72698" stop="72580"/>
              <exon start="72411" stop="72058"/>
              <exon start="71872" stop="71859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCACCTGCTTACAAGAAAAAGAACCTTAGTATATCGGACCAAAGTATATCAGCAGTGACTTTAAAAAAGATATGGGATGAGTTTCCTTTAAGTTCGAATCATTGCTTGTCAGAGAAG : GACGGTGACCGATATTTCATGCTGAATATTGTAATTACAGAAATATTTTTGCATCTAAGTTATGGGTCCAAATTATCACCTGGGTTGCTGGAAAGATTTCTGGAGTTCATTGAGAGTTCTCTATCTGAAAAG : ATTCACGATGGCAGAGAGGCTGGTAAAGTACATCATGAGAAGCATTTAATTTCACTGGTTGCTTTTATCCCAAAACTCATTATGCAAGTGTCTGTTGCTTGGAAGTCACGTATCCTTCAG : GCTTTTACGAAAGTTTTTGAGAATTGCAGTGCAGAGTCCTCAATGAAATTGGCTTGCCTTTCTGTTGTTGAAGAAATGCTACTTCCT : GAGCAGAATTGCCTTTATCTGGATCCCAAAGATCTTGAAATATTAAATCATAGTACATGGATAGGGGAGCTTCCAAAGCTGTTAGTCCTCTTAGGTGATAAACACCCATTACATTCAAAG : GCTGTGTTACGTCTTCAGCTTCGTGTTGGACAAACTGCTAATTTAAGCATGACACCGGCAAAAGAATATGAAAATATGCAGTACTTTATAAGAGCTTTTTACTGCACCTACTCCAATG : AAACTGTAAGCTATGGTCCATTCATGAGGCTTCCTAGAGATATTCAGGAGCTCTCTGTATGCTGTCTGTATTACTTCCCTTTCTTGGACAAGGTGATACTCGAGTCTTTAGCCTCATGCTGCATAT : GTCACGAGTTGGAACCATTTATCCTTTTCCGAGTCATGGAAGTTCTACACTCAGCCTACAAGGCTGGCCATATCCAGATTGCAGATTACATTAGCTTCTTCATCACATTGCTTTCACGCTTTCAAGTTTATCCTG : AGAAAATTGATCCTATGGAGAAGCACGAAGGGAAGTCAAATCGTGGAACCTTCAAAGCAGTTGTTAGGGCTGTTTGTTCTTGGTTGTCGCAGATAGGAGATGATGTGCTCGTTTTGCAGATGCTGGAGAAAATTGTTCTTGATGAGATA : TCTCAGAAACAACCAGTAGACAACATTTATGGTTTTATAAGATTGCTTATCACACTAGACTCAAAACCTACTCGACTTTCTGAAGAAACTATCAATAGACTAAGCGAGGTCCTTCCGGAGTACTTCTTAGATGTTGTGAAT : AACATTCCAGAGGAAGATGACGAGTCTACTAAATCTTTGATTCGACAGACAAGGGTTTATTACCTCCTTCCTTGTTTTTTCCTATTTGATAGGAGCAACATGCTGTTAAATCAGATATTGGAAGTGATGGGATCATTTATCAGGGGAAATGTGCCTCATTCGAAAGGTGCCTTGGCAAAGGATCATTCAAGCAGAATTCTTTCTGTAGTCTCTGTTCTCTTACTTGTGCTTGGAGATATTAAAATGCAGAAACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG : TCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAG : TGATACAATTTGCTGTACAAGATGAATGTTTCAATCCCAATGATCATTCATTGACATTCTGCAGACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAAT : AAATTAAATATAAA</gDNA_template>
            <first_frame> W  H  L  L  T  R  K  R  T  L  V  Y  R  T  K  V  Y  Q  Q  *  L  *  K  R  Y  G  M  S  F  L  *  V  R  I  I  A  C  Q  R  R :   T  V  T  D  I  S  C  *  I  L  *  L  Q  K  Y  F  C  I  *  V  M  G  P  N  Y  H  L  G  C  W  K  D  F  W  S  S  L  R  V  L  Y  L  K  R :   F  T  M  A  E  R  L  V  K  Y  I  M  R  S  I  *  F  H  W  L  L  L  S  Q  N  S  L  C  K  C  L  L  L  G  S  H  V  S  F  R :   L  L  R  K  F  L  R  I  A  V  Q  S  P  Q  *  N  W  L  A  F  L  L  L  K  K  C  Y  F  L :   S  R  I  A  F  I  W  I  P  K  I  L  K  Y  *  I  I  V  H  G  *  G  S  F  Q  S  C  *  S  S  *  V  I  N  T  H  Y  I  Q  R :   L  C  Y  V  F  S  F  V  L  D  K  L  L  I  *  A  *  H  R  Q  K  N  M  K  I  C  S  T  L  *  E  L  F  T  A  P  T  P  M  :  K  L  *  A  M  V  H  S  *  G  F  L  E  I  F  R  S  S  L  Y  A  V  C  I  T  S  L  S  W  T  R  *  Y  S  S  L  *  P  H  A  A  Y  :  V  T  S  W  N  H  L  S  F  S  E  S  W  K  F  Y  T  Q  P  T  R  L  A  I  S  R  L  Q  I  T  L  A  S  S  S  H  C  F  H  A  F  K  F  I  L  :  R  K  L  I  L  W  R  S  T  K  G  S  Q  I  V  E  P  S  K  Q  L  L  G  L  F  V  L  G  C  R  R  *  E  M  M  C  S  F  C  R  C  W  R  K  L  F  L  M  R  Y :   L  R  N  N  Q  *  T  T  F  M  V  L  *  D  C  L  S  H  *  T  Q  N  L  L  D  F  L  K  K  L  S  I  D  *  A  R  S  F  R  S  T  S  *  M  L  *  I :   T  F  Q  R  K  M  T  S  L  L  N  L  *  F  D  R  Q  G  F  I  T  S  F  L  V  F  S  Y  L  I  G  A  T  C  C  *  I  R  Y  W  K  *  W  D  H  L  S  G  E  M  C  L  I  R  K  V  P  W  Q  R  I  I  Q  A  E  F  F  L  *  S  L  F  S  Y  L  C  L  E  I  L  K  C  R  N  F  F  Y  H  A  R  H  R  L  E  I  Y  *  K  A  C  T  D  S  S :   L  L  R  I  L  Q  *  Q  L  K  K  D  I  K  S  E  V  L  M  T  Y  *  L  Q  P  L  A  H  W  N  T  T  N  L  E  *  C  I  *   : V  I  Q  F  A  V  Q  D  E  C  F  N  P  N  D  H  S  L  T  F  C  R  L  N  V  V  R  G  K  E  R  G  S  R  M  Q  S  S  S  N  Y  L  *  *  H  Q  L  S  G  *  V  G  L  L  L  S  L  I  D  H  S  N  K  N  V  E  F  L  L  N  L  L  D  Q  C  D  G  Y  I  Q  L  *  P  L  N  *  N  C  N  G  L  W  L  K  H  S  V  T  T  I  E  M  T  L  *  L  L  S  E  V  Y  I  F  L  L  H  I  *   : *  I  K  Y  K </first_frame>
            <second_frame>  G  T  C  L  Q  E  K  E  P  *  Y  I  G  P  K  Y  I  S  S  D  F  K  K  D  M  G  *  V  S  F  K  F  E  S  L  L  V  R  E   : G  R  *  P  I  F  H  A  E  Y  C  N  Y  R  N  I  F  A  S  K  L  W  V  Q  I  I  T  W  V  A  G  K  I  S  G  V  H  *  E  F  S  I  *  K   : D  S  R  W  Q  R  G  W  *  S  T  S  *  E  A  F  N  F  T  G  C  F  Y  P  K  T  H  Y  A  S  V  C  C  L  E  V  T  Y  P  S   : G  F  Y  E  S  F  *  E  L  Q  C  R  V  L  N  E  I  G  L  P  F  C  C  *  R  N  A  T  S   : *  A  E  L  P  L  S  G  S  Q  R  S  *  N  I  K  S  *  Y  M  D  R  G  A  S  K  A  V  S  P  L  R  *  *  T  P  I  T  F  K   : G  C  V  T  S  S  A  S  C  W  T  N  C  *  F  K  H  D  T  G  K  R  I  *  K  Y  A  V  L  Y  K  S  F  L  L  H  L  L  Q  * :   N  C  K  L  W  S  I  H  E  A  S  *  R  Y  S  G  A  L  C  M  L  S  V  L  L  P  F  L  G  Q  G  D  T  R  V  F  S  L  M  L  H  M :   S  R  V  G  T  I  Y  P  F  P  S  H  G  S  S  T  L  S  L  Q  G  W  P  Y  P  D  C  R  L  H  *  L  L  H  H  I  A  F  T  L  S  S  L  S  * :   E  N  *  S  Y  G  E  A  R  R  E  V  K  S  W  N  L  Q  S  S  C  *  G  C  L  F  L  V  V  A  D  R  R  *  C  A  R  F  A  D  A  G  E  N  C  S  *  *  D   : I  S  E  T  T  S  R  Q  H  L  W  F  Y  K  I  A  Y  H  T  R  L  K  T  Y  S  T  F  *  R  N  Y  Q  *  T  K  R  G  P  S  G  V  L  L  R  C  C  E   : *  H  S  R  G  R  *  R  V  Y  *  I  F  D  S  T  D  K  G  L  L  P  P  S  L  F  F  P  I  *  *  E  Q  H  A  V  K  S  D  I  G  S  D  G  I  I  Y  Q  G  K  C  A  S  F  E  R  C  L  G  K  G  S  F  K  Q  N  S  F  C  S  L  C  S  L  T  C  A  W  R  Y  *  N  A  E  T  S  S  I  M  Q  D  T  D  *  K  Y  T  R  K  H  A  Q  T  R   : V  F  *  G  Y  Y  N  D  N  *  R  K  T  *  N  P  K  C  L  *  H  T  D  C  S  R  *  H  I  G  I  R  L  T  W  N  S  V  S  E  :  *  Y  N  L  L  Y  K  M  N  V  S  I  P  M  I  I  H  *  H  S  A  D  S  M  *  F  V  V  K  K  E  D  R  E  C  N  R  H  L  I  I  F  D  D  T  S  *  A  G  K  *  D  F  C  *  A  S  S  I  T  V  T  K  T  *  S  F  C  S  T  S  S  I  S  A  M  V  T  F  N  Y  D  H  *  I  E  I  V  M  A  Y  G  *  N  I  Q  L  Q  P  L  K  *  H  Y  N  Y  C  L  R  Y  I  Y  S  Y  C  I  F  N  :  K  L  N  I   </second_frame>
            <third_frame>   A  P  A  Y  K  K  K  N  L  S  I  S  D  Q  S  I  S  A  V  T  L  K  K  I  W  D  E  F  P  L  S  S  N  H  C  L  S  E  K  :  D  G  D  R  Y  F  M  L  N  I  V  I  T  E  I  F  L  H  L  S  Y  G  S  K  L  S  P  G  L  L  E  R  F  L  E  F  I  E  S  S  L  S  E  K  :  I  H  D  G  R  E  A  G  K  V  H  H  E  K  H  L  I  S  L  V  A  F  I  P  K  L  I  M  Q  V  S  V  A  W  K  S  R  I  L  Q  :  A  F  T  K  V  F  E  N  C  S  A  E  S  S  M  K  L  A  C  L  S  V  V  E  E  M  L  L  P  :  E  Q  N  C  L  Y  L  D  P  K  D  L  E  I  L  N  H  S  T  W  I  G  E  L  P  K  L  L  V  L  L  G  D  K  H  P  L  H  S  K  :  A  V  L  R  L  Q  L  R  V  G  Q  T  A  N  L  S  M  T  P  A  K  E  Y  E  N  M  Q  Y  F  I  R  A  F  Y  C  T  Y  S  N   : E  T  V  S  Y  G  P  F  M  R  L  P  R  D  I  Q  E  L  S  V  C  C  L  Y  Y  F  P  F  L  D  K  V  I  L  E  S  L  A  S  C  C  I   : C  H  E  L  E  P  F  I  L  F  R  V  M  E  V  L  H  S  A  Y  K  A  G  H  I  Q  I  A  D  Y  I  S  F  F  I  T  L  L  S  R  F  Q  V  Y  P   : E  K  I  D  P  M  E  K  H  E  G  K  S  N  R  G  T  F  K  A  V  V  R  A  V  C  S  W  L  S  Q  I  G  D  D  V  L  V  L  Q  M  L  E  K  I  V  L  D  E  I  :  S  Q  K  Q  P  V  D  N  I  Y  G  F  I  R  L  L  I  T  L  D  S  K  P  T  R  L  S  E  E  T  I  N  R  L  S  E  V  L  P  E  Y  F  L  D  V  V  N  :  N  I  P  E  E  D  D  E  S  T  K  S  L  I  R  Q  T  R  V  Y  Y  L  L  P  C  F  F  L  F  D  R  S  N  M  L  L  N  Q  I  L  E  V  M  G  S  F  I  R  G  N  V  P  H  S  K  G  A  L  A  K  D  H  S  S  R  I  L  S  V  V  S  V  L  L  L  V  L  G  D  I  K  M  Q  K  L  L  L  S  C  K  T  Q  I  R  N  I  L  E  S  M  H  R  L  E  :  S  S  E  D  I  T  M  T  I  E  E  R  H  K  I  R  S  A  Y  D  I  L  T  A  A  V  S  T  L  E  Y  D  *  P  G  I  V  Y  L  S :   D  T  I  C  C  T  R  *  M  F  Q  S  Q  *  S  F  I  D  I  L  Q  T  Q  C  S  S  W  *  R  K  R  I  E  N  A  I  V  I  *  L  S  L  M  T  P  V  E  R  V  S  R  T  S  V  E  P  H  R  S  Q  *  Q  K  R  R  V  S  A  Q  P  P  R  S  V  R  W  L  H  S  I  M  T  I  E  L  K  L  *  W  P  M  V  K  T  F  S  Y  N  H  *  N  D  I  I  I  I  V  *  G  I  Y  I  L  I  A  Y  L  I :   N  *  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83805" stop="83689"/>
                    <exon start="82943" stop="82812"/>
                    <exon start="79466" stop="79347"/>
                    <exon start="79030" stop="78944"/>
                    <exon start="78666" stop="78547"/>
                    <exon start="78412" stop="78295"/>
                    <exon start="78189" stop="78064"/>
                    <exon start="75188" stop="75054"/>
                    <exon start="74115" stop="73967"/>
                    <exon start="73861" stop="73721"/>
                    <exon start="73395" stop="73084"/>
                    <exon start="72698" stop="72600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1653</number_coding_nucleotides>
                  <number_encoded_amino_acids>551</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APAYKKKNLSISDQSISAVTLKKIWDEFPLSSNHCLSEKDGDRYFMLNIVITEIFLHLSYGSKLSPGLLERFLEFIESSLSEKIHDGREAGKVHHEKHLISLVAFIPKLIMQVSVAWKSRILQAFTKVFENCSAESSMKLACLSVVEEMLLPEQNCLYLDPKDLEILNHSTWIGELPKLLVLLGDKHPLHSKAVLRLQLRVGQTANLSMTPAKEYENMQYFIRAFYCTYSNETVSYGPFMRLPRDIQELSVCCLYYFPFLDKVILESLASCCICHELEPFILFRVMEVLHSAYKAGHIQIADYISFFITLLSRFQVYPEKIDPMEKHEGKSNRGTFKAVVRAVCSWLSQIGDDVLVLQMLEKIVLDEISQKQPVDNIYGFIRLLITLDSKPTRLSEETINRLSEVLPEYFLDVVNNIPEEDDESTKSLIRQTRVYYLLPCFFLFDRSNMLLNQILEVMGSFIRGNVPHSKGALAKDHSSRILSVVSVLLLVLGDIKMQKLLLSCKTQIRNILESMHRLESSEDITMTIEERHKIRSAYDILTAAVSTLEYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="73145" e_stop="73084"/>
            <exon e_start="72698" e_stop="72580"/>
            <exon e_start="72347" e_stop="72032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.799" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.711" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73145" e_stop="73084" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.799" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73083" i_stop="72699" i_length="385"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72698" e_stop="72580" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.711">
            <gDNA_intron_boundary i_start="72579" i_stop="72348" i_length="232"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="72347" e_stop="72032" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73145" stop="73084"/>
              <exon start="72698" stop="72580"/>
              <exon start="72347" stop="72032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTCTTCTATCATGCAAGACACAGATTAGAAATATACTAGAAAGCATGCACAGACTCGAG : TCTTCTGAGGATATTACAATGACAATTGAAGAAAGACATAAAATCCGAAGTGCTTATGACATACTGACTGCAGCCGTTAGCACATTGGAATACGACTAACCTGGAATAGTGTATCTGAG : ACTCAATGTAGTTCGTGGTAAAGAAAGAGGATCGAGAATGCAATCGTCATCTAATTATCTTTGATGACACCAGTTGAGCGGGTAAGTAGGACTTCTGTTGAGCCTCATCGATCACAGTAACAAAAACGTAGAGTTTCTGCTCAACCTCCTCGATCAGTGCGATGGTTACATTCAATTATGACCATTGAATTGAAATTGTAATGGCCTATGGTTAAAACATTCAGTTACAACCATTGAAATGACATTATAATTATTGTCTGAGGTATATATATTCTTATTGCATATTTAATGTATCTTTATATGAATTTAGAATGAC</gDNA_template>
            <first_frame> N  F  F  Y  H  A  R  H  R  L  E  I  Y  *  K  A  C  T  D  S  S :   L  L  R  I  L  Q  *  Q  L  K  K  D  I  K  S  E  V  L  M  T  Y  *  L  Q  P  L  A  H  W  N  T  T  N  L  E  *  C  I  *   : D  S  M  *  F  V  V  K  K  E  D  R  E  C  N  R  H  L  I  I  F  D  D  T  S  *  A  G  K  *  D  F  C  *  A  S  S  I  T  V  T  K  T  *  S  F  C  S  T  S  S  I  S  A  M  V  T  F  N  Y  D  H  *  I  E  I  V  M  A  Y  G  *  N  I  Q  L  Q  P  L  K  *  H  Y  N  Y  C  L  R  Y  I  Y  S  Y  C  I  F  N  V  S  L  Y  E  F  R  M   </first_frame>
            <second_frame>  T  S  S  I  M  Q  D  T  D  *  K  Y  T  R  K  H  A  Q  T  R   : V  F  *  G  Y  Y  N  D  N  *  R  K  T  *  N  P  K  C  L  *  H  T  D  C  S  R  *  H  I  G  I  R  L  T  W  N  S  V  S  E  :  T  Q  C  S  S  W  *  R  K  R  I  E  N  A  I  V  I  *  L  S  L  M  T  P  V  E  R  V  S  R  T  S  V  E  P  H  R  S  Q  *  Q  K  R  R  V  S  A  Q  P  P  R  S  V  R  W  L  H  S  I  M  T  I  E  L  K  L  *  W  P  M  V  K  T  F  S  Y  N  H  *  N  D  I  I  I  I  V  *  G  I  Y  I  L  I  A  Y  L  M  Y  L  Y  M  N  L  E  *  </second_frame>
            <third_frame>   L  L  L  S  C  K  T  Q  I  R  N  I  L  E  S  M  H  R  L  E  :  S  S  E  D  I  T  M  T  I  E  E  R  H  K  I  R  S  A  Y  D  I  L  T  A  A  V  S  T  L  E  Y  D  *  P  G  I  V  Y  L  R :   L  N  V  V  R  G  K  E  R  G  S  R  M  Q  S  S  S  N  Y  L  *  *  H  Q  L  S  G  *  V  G  L  L  L  S  L  I  D  H  S  N  K  N  V  E  F  L  L  N  L  L  D  Q  C  D  G  Y  I  Q  L  *  P  L  N  *  N  C  N  G  L  W  L  K  H  S  V  T  T  I  E  M  T  L  *  L  L  S  E  V  Y  I  F  L  L  H  I  *  C  I  F  I  *  I  *  N  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="81354" e_stop="80793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="81354" e_stop="80793" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81354" stop="80793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATCACATATCCTCAACAACAACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAAAGGCAATCACTAGATCAGCAAAACACAATATCAAGTTCACTAATGATAAGTATGTGCAATGTAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCGCACAGTTCACAACAACCACAAAAACATGAAGTTACATAAACAATGA</gDNA_template>
            <first_frame> Q  I  T  Y  P  Q  Q  Q  H  F  N  K  S  H  I  L  N  N  N  T  S  T  N  Y  I  S  S  I  T  S  S  V  F  N  N  H  K  F  R  K  K  A  I  T  R  S  A  K  H  N  I  K  F  T  N  D  K  Y  V  Q  C  N  G  M  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  H  L  S  R  R  T  T  R  P  S  I  I  V  T  I  A  A  R  D  T  S  L  E  I  *  Y  P  S  R  R  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  Y  F  S  M  H  I  T  L  A  T  T  N  A  S  E  *  C  R  *  Q  V  H  T  Y  N  E  E  M  T  I  F  I  T  S  H  S  S  Q  Q  P  Q  K  H  E  V  T  *  T  M  </first_frame>
            <second_frame>  K  S  H  I  L  N  N  N  T  S  T  N  H  I  S  S  T  T  T  L  Q  Q  I  I  Y  P  Q  *  Q  A  Q  Y  S  T  I  T  S  S  A  K  R  Q  S  L  D  Q  Q  N  T  I  S  S  S  L  M  I  S  M  C  N  V  M  E  C  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  C  I  C  R  G  A  R  H  D  P  R  *  *  *  P  S  R  R  A  I  R  P  S  K  Y  S  I  H  R  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  P  I  I  S  Q  C  T  *  H  L  P  Q  P  M  P  Q  N  N  A  D  D  K  F  T  H  I  M  R  R  *  P  F  S  *  H  R  T  V  H  N  N  H  K  N  M  K  L  H  K  Q  * </second_frame>
            <third_frame>   N  H  I  S  S  T  T  T  L  Q  Q  I  T  Y  P  Q  Q  Q  H  F  N  K  L  Y  I  L  N  N  K  L  S  I  Q  Q  S  Q  V  P  Q  K  G  N  H  *  I  S  K  T  Q  Y  Q  V  H  *  *  *  V  C  A  M  *  W  N  A  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  A  S  V  A  A  H  D  T  T  L  D  N  S  N  H  R  G  A  R  Y  V  P  R  N  I  V  S  I  A  A  R  D  T  S  L  E  M  V  H  P  L  K  Y  P  L  F  L  N  A  H  N  T  C  H  N  Q  C  L  R  I  M  Q  M  T  S  S  H  I  *  *  G  D  D  H  F  H  N  I  A  Q  F  T  T  T  T  K  T  *  S  Y  I  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81133" stop="80867"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDTHPLSLSPGPMGDISVHASVAAHDTTLDNSNHRGARYVPRNIVSIAARDTSLEMVHPLKYPLFLNAHNTCHNQCLRIMQMTSSHI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81354" stop="81148"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QITYPQQQHFNKSHILNNNTSTNYISSITSSVFNNHKFRKKAITRSAKHNIKFTNDKYVQCNGMQCQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="81616" e_stop="81411"/>
            <exon e_start="81347" e_stop="81234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.922"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="81616" e_stop="81411" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81410" i_stop="81348" i_length="63"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="81347" e_stop="81234" e_length="114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81616" stop="81411"/>
              <exon start="81347" stop="81234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCACCCCCAACCGAACCTCCACAACTACAACCTACATAAACATCAGCCCAACCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCCACAACAACACTTTACAAATTATATATCCTCAACATCAACACTTAAACAAATTAG : CATATCCTCAACAACAACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</gDNA_template>
            <first_frame> Y  H  P  Q  P  N  L  H  N  Y  N  L  H  K  H  Q  P  N  L  T  T  H  S  L  H  R  T  *  L  N  K  N  I  *  T  N  Y  I  S  S  T  T  T  L  *  Q  I  T  Y  P  P  Q  Q  H  F  T  N  Y  I  S  S  T  S  T  L  K  Q  I  S :   I  S  S  T  T  T  L  Q  Q  I  T  Y  P  Q  Q  Q  H  F  N  K  L  Y  I  L  N  N  K  L  S  I  Q  Q  S  Q  V  P  Q   </first_frame>
            <second_frame>  T  T  P  N  R  T  S  T  T  T  T  Y  I  N  I  S  P  T  *  Q  L  T  V  Y  I  E  R  N  S  T  K  T  F  R  Q  I  T  Y  P  P  Q  Q  H  F  N  K  L  H  I  L  H  N  N  T  L  Q  I  I  Y  P  Q  H  Q  H  L  N  K  L   : A  Y  P  Q  Q  Q  H  F  N  K  S  H  I  L  N  N  N  T  S  T  N  Y  I  S  S  I  T  S  S  V  F  N  N  H  K  F  R  K  </second_frame>
            <third_frame>   P  P  P  T  E  P  P  Q  L  Q  P  T  *  T  S  A  Q  P  N  N  S  Q  F  T  *  N  V  T  Q  Q  K  H  L  D  K  L  H  I  L  H  N  N  T  L  T  N  Y  I  S  S  T  T  T  L  Y  K  L  Y  I  L  N  I  N  T  *  T  N  *  :  H  I  L  N  N  N  T  S  T  N  H  I  S  S  T  T  T  L  Q  Q  I  I  Y  P  Q  *  Q  A  Q  Y  S  T  I  T  S  S  A  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81558" stop="81411"/>
                    <exon start="81347" stop="81235"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTVYIERNSTKTFRQITYPPQQHFNKLHILHNNTLQIIYPQHQHLNKLAYPQQQHFNKSHILNNNTSTNYISSITSSVFNNHKFRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="106633" PGL_stop="105341"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106633" e_stop="106421"/>
            <exon e_start="105356" e_stop="105341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.806" e_score="1.000"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106633" e_stop="106421" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.806">
            <gDNA_intron_boundary i_start="106420" i_stop="105357" i_length="1064"/>
          </intron>
          <exon e_serial="2" e_score="0.625">
            <gDNA_exon_boundary e_start="105356" e_stop="105341" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106633" stop="106421"/>
              <exon start="105356" stop="105341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACGCCACCCTCGGTTCCGCGACGACATGCCATCCGTCCCCGTCAACTTTTTCCGGCGACTACCGCCACTTTCCGATCAAATTCTCTAAAGATTGTTCAGTGGTGTTGTTATTGTTTTTTTCATTATTTTAGCCTTTTAGACTAGTTTTTCATGGTTGCTCTCTGTTTACTTTGTGTAAAACATGGCAATTGGCATAAAATTATTTATTTAA : ACAGCAAAATATAACA</gDNA_template>
            <first_frame> L  R  H  P  R  F  R  D  D  M  P  S  V  P  V  N  F  F  R  R  L  P  P  L  S  D  Q  I  L  *  R  L  F  S  G  V  V  I  V  F  F  I  I  L  A  F  *  T  S  F  S  W  L  L  S  V  Y  F  V  *  N  M  A  I  G  I  K  L  F  I  *  :  T  A  K  Y  N  </first_frame>
            <second_frame>  Y  A  T  L  G  S  A  T  T  C  H  P  S  P  S  T  F  S  G  D  Y  R  H  F  P  I  K  F  S  K  D  C  S  V  V  L  L  L  F  F  S  L  F  *  P  F  R  L  V  F  H  G  C  S  L  F  T  L  C  K  T  W  Q  L  A  *  N  Y  L  F  K :   Q  Q  N  I  T </second_frame>
            <third_frame>   T  P  P  S  V  P  R  R  H  A  I  R  P  R  Q  L  F  P  A  T  T  A  T  F  R  S  N  S  L  K  I  V  Q  W  C  C  Y  C  F  F  H  Y  F  S  L  L  D  *  F  F  M  V  A  L  C  L  L  C  V  K  H  G  N  W  H  K  I  I  Y  L   : N  S  K  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0130I12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="117239" PGL_stop="114661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117239" e_stop="117193"/>
            <exon e_start="117111" e_stop="117009"/>
            <exon e_start="115686" e_stop="115494"/>
            <exon e_start="114814" e_stop="114661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.977" e_score="0.979"/>
          <exon-intron don_prob="0.997" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="117239" e_stop="117193" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.977">
            <gDNA_intron_boundary i_start="117192" i_stop="117112" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117111" e_stop="117009" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.877">
            <gDNA_intron_boundary i_start="117008" i_stop="115687" i_length="1322"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115686" e_stop="115494" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115493" i_stop="114815" i_length="679"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114814" e_stop="114661" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117239" stop="117193"/>
              <exon start="117111" stop="117009"/>
              <exon start="115686" stop="115494"/>
              <exon start="114814" stop="114663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117052" stop="117009"/>
              <exon start="115686" stop="115494"/>
              <exon start="114814" stop="114661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228898" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTGAAGATGTTCGGTGGCTTTGTTCCTTAACCGAATCTGAGCTT : GATTTATTGATAGGTTTGAAAGTTCTGATACAACAACGTGCCAAAAAGATTGGTCACAAGTCTTTAGCTAACAAGTTTGATTTGAAGACCCTTCGAGCCCTCA : GTTTCGTTTTGATGGAGAATCTTAAAGGAAAACTTAGAGATCTCTCCGGTACACCTGATACAGCCGAGTTCTCATCAACTTTAGATGCATGTAATTTGTTGAATTATGTTCGAGACAAGACTTTTGCAAATATGGGGGTTGAACAGCTGAGCTCCTACATTTGCAACGACAAGAGGAAGAGAATTTTGGAGAT : GTTTTCTGAAGACATGGCTCCAAATAGAAAGCAGAGGAGTTAACAGTGACAACAGTAGATCCATGTAGCAATATAATTTAATTCCTAAAATGTAATATTCAAATTTTGATGTTAGGGAATATTATTTTCCATTTTTGCTTTCATTTTTTGAACT</gDNA_template>
            <first_frame> E  L  K  M  F  G  G  F  V  P  *  P  N  L  S  L :   I  Y  *  *  V  *  K  F  *  Y  N  N  V  P  K  R  L  V  T  S  L  *  L  T  S  L  I  *  R  P  F  E  P  S  :  V  S  F  *  W  R  I  L  K  E  N  L  E  I  S  P  V  H  L  I  Q  P  S  S  H  Q  L  *  M  H  V  I  C  *  I  M  F  E  T  R  L  L  Q  I  W  G  L  N  S  *  A  P  T  F  A  T  T  R  G  R  E  F  W  R   : C  F  L  K  T  W  L  Q  I  E  S  R  G  V  N  S  D  N  S  R  S  M  *  Q  Y  N  L  I  P  K  M  *  Y  S  N  F  D  V  R  E  Y  Y  F  P  F  L  L  S  F  F  E   </first_frame>
            <second_frame>  N  *  R  C  S  V  A  L  F  L  N  R  I  *  A   : *  F  I  D  R  F  E  S  S  D  T  T  T  C  Q  K  D  W  S  Q  V  F  S  *  Q  V  *  F  E  D  P  S  S  P  Q :   F  R  F  D  G  E  S  *  R  K  T  *  R  S  L  R  Y  T  *  Y  S  R  V  L  I  N  F  R  C  M  *  F  V  E  L  C  S  R  Q  D  F  C  K  Y  G  G  *  T  A  E  L  L  H  L  Q  R  Q  E  E  E  N  F  G  D  :  V  F  *  R  H  G  S  K  *  K  A  E  E  L  T  V  T  T  V  D  P  C  S  N  I  I  *  F  L  K  C  N  I  Q  I  L  M  L  G  N  I  I  F  H  F  C  F  H  F  L  N  </second_frame>
            <third_frame>   I  E  D  V  R  W  L  C  S  L  T  E  S  E  L  :  D  L  L  I  G  L  K  V  L  I  Q  Q  R  A  K  K  I  G  H  K  S  L  A  N  K  F  D  L  K  T  L  R  A  L   : S  F  V  L  M  E  N  L  K  G  K  L  R  D  L  S  G  T  P  D  T  A  E  F  S  S  T  L  D  A  C  N  L  L  N  Y  V  R  D  K  T  F  A  N  M  G  V  E  Q  L  S  S  Y  I  C  N  D  K  R  K  R  I  L  E  M :   F  S  E  D  M  A  P  N  R  K  Q  R  S  *  Q  *  Q  Q  *  I  H  V  A  I  *  F  N  S  *  N  V  I  F  K  F  *  C  *  G  I  L  F  S  I  F  A  F  I  F  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117237" stop="117193"/>
                    <exon start="117111" stop="117009"/>
                    <exon start="115686" stop="115494"/>
                    <exon start="114814" stop="114772"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEDVRWLCSLTESELDLLIGLKVLIQQRAKKIGHKSLANKFDLKTLRALSFVLMENLKGKLRDLSGTPDTAEFSSTLDACNLLNYVRDKTFANMGVEQLSSYICNDKRKRILEMFSEDMAPNRKQRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="141699" PGL_stop="142357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141699" e_stop="142357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="141699" e_stop="142357" e_length="659"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141699" stop="142357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTGTTTTTTTCCATTTTTTTTCATTTTTCATGTGTTTGGTATGCCGGAAATTGATGTATTAGTTGCCGGAGTTTGAGAAAAGAAGTCCCTTTTCCCCTTTTTGTGTAATTTCATGTATTGGGTTTGTTGGGTGTTGACGGATTTGTTGCCGGAGTTTGAGAGAAGAAAACTCCCTTATCCCCTTTTTTTTTTTTTTTTTACTTGTTGGGTTTGCCGGGAATTGACGTATTGGTTGCCGGAGATTGAGAAAAGAACTCCCTTTTCCCCTTTTGTAATTTCATTTGTTGGGTTAGCTGGGCGTTGACGTATTAGTTGCCGGAGTTTGAGAGAAGAAAACTCATTTATCCCCTGTTTTTCCATTTTTTTACTTGTGGGGTTCGCCGGGAATTGACGTATTGGTTGCCGGAGTTCGAGGAAAAGCACCCCTTTTTTTTTATCTGATTCAGTTATTGGGTTTGCAGGGGATTGCGTGTTAGTTGCCGGAGTTCGAGAAAAAAAAACACCCTTTTTCAGCTGATTCAGTTATTGGTTTTGCCGGGGATTGCACGTTAGTAGCCGGAGTTCGAGAAAAAACTCCCTTTTTCAGCTGATTCAGTTATTGGGTTTGGAAGGGATTGTGTGTTAGTTGCCGGAGTTCGAGAAAAAACTCCCTTTTTC</gDNA_template>
            <first_frame> L  C  F  F  P  F  F  F  I  F  H  V  F  G  M  P  E  I  D  V  L  V  A  G  V  *  E  K  K  S  L  F  P  F  L  C  N  F  M  Y  W  V  C  W  V  L  T  D  L  L  P  E  F  E  R  R  K  L  P  Y  P  L  F  F  F  F  F  T  C  W  V  C  R  E  L  T  Y  W  L  P  E  I  E  K  R  T  P  F  S  P  F  V  I  S  F  V  G  L  A  G  R  *  R  I  S  C  R  S  L  R  E  E  N  S  F  I  P  C  F  S  I  F  L  L  V  G  F  A  G  N  *  R  I  G  C  R  S  S  R  K  S  T  P  F  F  L  S  D  S  V  I  G  F  A  G  D  C  V  L  V  A  G  V  R  E  K  K  T  P  F  F  S  *  F  S  Y  W  F  C  R  G  L  H  V  S  S  R  S  S  R  K  N  S  L  F  Q  L  I  Q  L  L  G  L  E  G  I  V  C  *  L  P  E  F  E  K  K  L  P  F   </first_frame>
            <second_frame>  S  V  F  F  H  F  F  S  F  F  M  C  L  V  C  R  K  L  M  Y  *  L  P  E  F  E  K  R  S  P  F  S  P  F  C  V  I  S  C  I  G  F  V  G  C  *  R  I  C  C  R  S  L  R  E  E  N  S  L  I  P  F  F  F  F  F  L  L  V  G  F  A  G  N  *  R  I  G  C  R  R  L  R  K  E  L  P  F  P  L  L  *  F  H  L  L  G  *  L  G  V  D  V  L  V  A  G  V  *  E  K  K  T  H  L  S  P  V  F  P  F  F  Y  L  W  G  S  P  G  I  D  V  L  V  A  G  V  R  G  K  A  P  L  F  F  Y  L  I  Q  L  L  G  L  Q  G  I  A  C  *  L  P  E  F  E  K  K  K  H  P  F  S  A  D  S  V  I  G  F  A  G  D  C  T  L  V  A  G  V  R  E  K  T  P  F  F  S  *  F  S  Y  W  V  W  K  G  L  C  V  S  C  R  S  S  R  K  N  S  L  F  </second_frame>
            <third_frame>   L  F  F  S  I  F  F  H  F  S  C  V  W  Y  A  G  N  *  C  I  S  C  R  S  L  R  K  E  V  P  F  P  L  F  V  *  F  H  V  L  G  L  L  G  V  D  G  F  V  A  G  V  *  E  K  K  T  P  L  S  P  F  F  F  F  F  Y  L  L  G  L  P  G  I  D  V  L  V  A  G  D  *  E  K  N  S  L  F  P  F  C  N  F  I  C  W  V  S  W  A  L  T  Y  *  L  P  E  F  E  R  R  K  L  I  Y  P  L  F  F  H  F  F  T  C  G  V  R  R  E  L  T  Y  W  L  P  E  F  E  E  K  H  P  F  F  F  I  *  F  S  Y  W  V  C  R  G  L  R  V  S  C  R  S  S  R  K  K  N  T  L  F  Q  L  I  Q  L  L  V  L  P  G  I  A  R  *  *  P  E  F  E  K  K  L  P  F  S  A  D  S  V  I  G  F  G  R  D  C  V  L  V  A  G  V  R  E  K  T  P  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141777" stop="142004"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKSLFPFLCNFMYWVCWVLTDLLPEFERRKLPYPLFFFFFTCWVCRELTYWLPEIEKRTPFSPFVISFVGLAGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="146761" PGL_stop="150078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146761" e_stop="147000"/>
            <exon e_start="147452" e_stop="147580"/>
            <exon e_start="147661" e_stop="147910"/>
            <exon e_start="149967" e_stop="150078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146761" e_stop="147000" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="147001" i_stop="147451" i_length="451"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="147452" e_stop="147580" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="147581" i_stop="147660" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="147661" e_stop="147910" e_length="250"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="147911" i_stop="149966" i_length="2056"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="149967" e_stop="150078" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146761" stop="147000"/>
              <exon start="147452" stop="147580"/>
              <exon start="147661" stop="147910"/>
              <exon start="149967" stop="150078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGAGAATTCTTCTTCGGAAAATCTTGACGATGGAGAGTTATGGCTACCTTCTGATATTTTTCCAGTAGAAGAAACTGTTTCTTCTGCTAATAATAAGCTCAAAAACAACAACCCCATTGCTTCTTCTCTTTGCTGTTGTTACTCTTGTGTTCTTCTTCTTCGTCATCCTCATAACTCCATTTTCATGGCTGAACAACAAGTTCTACAGAGTGTTCCAAAGCCATTTCCCATAACTGAG : CGGCGGTTCAGACCGGCTGAGAGGTGTTGCACCTGTACAGATTGTTCAATTTCAGACTATTTTGAACGGAGTAGAAGAGAAACAACCGGTCCACCACCGGTTTATCCACCGGTTCAACTTCACCACCAG : GTTGAGAGTTTGATGGAAGTTAGAGCTCCATTTTTACAGAAGGAAGAACAGAGCCGGTTCATCGGGATTCAGAGAAGAAACCTCGGCCTGAACCGGTTCGCCGGTAACTGGGTTTCGCCGTTTGTGGGTTTCGGTGGCAATGGCTGTGGTTTTAATGGTGAAAGTAGTTCTGTGAGAGATTATGGTGGAACTGGTGTCTTCCTCCCTAGAATACCTAGCAACATCAACAACAATGGTGGAAAGAAACAAG : GTGGTAGAAATAGGCAAGATGTTCAACAAACTGATCAAAGATATCCATGCATATGAGAAATGGCAAAAACCTAAAGAATTGGACCTAATGGATATATAGTAATTTGGTCATT</gDNA_template>
            <first_frame> M  E  N  S  S  S  E  N  L  D  D  G  E  L  W  L  P  S  D  I  F  P  V  E  E  T  V  S  S  A  N  N  K  L  K  N  N  N  P  I  A  S  S  L  C  C  C  Y  S  C  V  L  L  L  R  H  P  H  N  S  I  F  M  A  E  Q  Q  V  L  Q  S  V  P  K  P  F  P  I  T  E  :  R  R  F  R  P  A  E  R  C  C  T  C  T  D  C  S  I  S  D  Y  F  E  R  S  R  R  E  T  T  G  P  P  P  V  Y  P  P  V  Q  L  H  H  Q  :  V  E  S  L  M  E  V  R  A  P  F  L  Q  K  E  E  Q  S  R  F  I  G  I  Q  R  R  N  L  G  L  N  R  F  A  G  N  W  V  S  P  F  V  G  F  G  G  N  G  C  G  F  N  G  E  S  S  S  V  R  D  Y  G  G  T  G  V  F  L  P  R  I  P  S  N  I  N  N  N  G  G  K  K  Q   : G  G  R  N  R  Q  D  V  Q  Q  T  D  Q  R  Y  P  C  I  *  E  M  A  K  T  *  R  I  G  P  N  G  Y  I  V  I  W  S   </first_frame>
            <second_frame>  W  R  I  L  L  R  K  I  L  T  M  E  S  Y  G  Y  L  L  I  F  F  Q  *  K  K  L  F  L  L  L  I  I  S  S  K  T  T  T  P  L  L  L  L  F  A  V  V  T  L  V  F  F  F  F  V  I  L  I  T  P  F  S  W  L  N  N  K  F  Y  R  V  F  Q  S  H  F  P  *  L  S :   G  G  S  D  R  L  R  G  V  A  P  V  Q  I  V  Q  F  Q  T  I  L  N  G  V  E  E  K  Q  P  V  H  H  R  F  I  H  R  F  N  F  T  T  R :   L  R  V  *  W  K  L  E  L  H  F  Y  R  R  K  N  R  A  G  S  S  G  F  R  E  E  T  S  A  *  T  G  S  P  V  T  G  F  R  R  L  W  V  S  V  A  M  A  V  V  L  M  V  K  V  V  L  *  E  I  M  V  E  L  V  S  S  S  L  E  Y  L  A  T  S  T  T  M  V  E  R  N  K  :  V  V  E  I  G  K  M  F  N  K  L  I  K  D  I  H  A  Y  E  K  W  Q  K  P  K  E  L  D  L  M  D  I  *  *  F  G  H  </second_frame>
            <third_frame>   G  E  F  F  F  G  K  S  *  R  W  R  V  M  A  T  F  *  Y  F  S  S  R  R  N  C  F  F  C  *  *  *  A  Q  K  Q  Q  P  H  C  F  F  S  L  L  L  L  L  L  C  S  S  S  S  S  S  S  *  L  H  F  H  G  *  T  T  S  S  T  E  C  S  K  A  I  S  H  N  *   : A  A  V  Q  T  G  *  E  V  L  H  L  Y  R  L  F  N  F  R  L  F  *  T  E  *  K  R  N  N  R  S  T  T  G  L  S  T  G  S  T  S  P  P   : G  *  E  F  D  G  S  *  S  S  I  F  T  E  G  R  T  E  P  V  H  R  D  S  E  K  K  P  R  P  E  P  V  R  R  *  L  G  F  A  V  C  G  F  R  W  Q  W  L  W  F  *  W  *  K  *  F  C  E  R  L  W  W  N  W  C  L  P  P  *  N  T  *  Q  H  Q  Q  Q  W  W  K  E  T  R :   W  *  K  *  A  R  C  S  T  N  *  S  K  I  S  M  H  M  R  N  G  K  N  L  K  N  W  T  *  W  I  Y  S  N  L  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146761" stop="147000"/>
                    <exon start="147452" stop="147580"/>
                    <exon start="147661" stop="147910"/>
                    <exon start="149967" stop="150022"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MENSSSENLDDGELWLPSDIFPVEETVSSANNKLKNNNPIASSLCCCYSCVLLLRHPHNSIFMAEQQVLQSVPKPFPITERRFRPAERCCTCTDCSISDYFERSRRETTGPPPVYPPVQLHHQVESLMEVRAPFLQKEEQSRFIGIQRRNLGLNRFAGNWVSPFVGFGGNGCGFNGESSSVRDYGGTGVFLPRIPSNINNNGGKKQGGRNRQDVQQTDQRYPCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="151674" PGL_stop="152073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151674" e_stop="152073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="151674" e_stop="152073" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151674" stop="152073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATATTTCTCATCAACAAACAATTCCTTCATCATATGACAATTCTAGTTTTATCATGCCTAGTACTTACTATAATTACCCTAACAATAACAATCATAATAATAATTCATATAGTGTGAATTATTCCCAAAAATATTTACCATTGCAAGATCAAATTGGTACCAACATCAACAATAATTCAACGTCGTTCGGTCGTTATTTAACGACCATGATGTTAATTCTAGTCATGTCTATGATCATGTTCAGTGTAATCATATGGATGTTATTTGGAAAAGAAAGGCCTCAGTTTCAAATCATGTCATTACAAGTCCCAACAGGACTCATGATCACAAGTACATCAATGTTAGGTAATTGGCAAGTTAATGTATCAATGAAGAATCCAAATAATGAGCTAGCTATA</gDNA_template>
            <first_frame> I  Y  F  S  S  T  N  N  S  F  I  I  *  Q  F  *  F  Y  H  A  *  Y  L  L  *  L  P  *  Q  *  Q  S  *  *  *  F  I  *  C  E  L  F  P  K  I  F  T  I  A  R  S  N  W  Y  Q  H  Q  Q  *  F  N  V  V  R  S  L  F  N  D  H  D  V  N  S  S  H  V  Y  D  H  V  Q  C  N  H  M  D  V  I  W  K  R  K  A  S  V  S  N  H  V  I  T  S  P  N  R  T  H  D  H  K  Y  I  N  V  R  *  L  A  S  *  C  I  N  E  E  S  K  *  *  A  S  Y  </first_frame>
            <second_frame>  Y  I  S  H  Q  Q  T  I  P  S  S  Y  D  N  S  S  F  I  M  P  S  T  Y  Y  N  Y  P  N  N  N  N  H  N  N  N  S  Y  S  V  N  Y  S  Q  K  Y  L  P  L  Q  D  Q  I  G  T  N  I  N  N  N  S  T  S  F  G  R  Y  L  T  T  M  M  L  I  L  V  M  S  M  I  M  F  S  V  I  I  W  M  L  F  G  K  E  R  P  Q  F  Q  I  M  S  L  Q  V  P  T  G  L  M  I  T  S  T  S  M  L  G  N  W  Q  V  N  V  S  M  K  N  P  N  N  E  L  A  I </second_frame>
            <third_frame>   I  F  L  I  N  K  Q  F  L  H  H  M  T  I  L  V  L  S  C  L  V  L  T  I  I  T  L  T  I  T  I  I  I  I  I  H  I  V  *  I  I  P  K  N  I  Y  H  C  K  I  K  L  V  P  T  S  T  I  I  Q  R  R  S  V  V  I  *  R  P  *  C  *  F  *  S  C  L  *  S  C  S  V  *  S  Y  G  C  Y  L  E  K  K  G  L  S  F  K  S  C  H  Y  K  S  Q  Q  D  S  *  S  Q  V  H  Q  C  *  V  I  G  K  L  M  Y  Q  *  R  I  Q  I  M  S  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="151675" stop="152073"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YISHQQTIPSSYDNSSFIMPSTYYNYPNNNNHNNNSYSVNYSQKYLPLQDQIGTNINNNSTSFGRYLTTMMLILVMSMIMFSVIIWMLFGKERPQFQIMSLQVPTGLMITSTSMLGNWQVNVSMKNPNNELAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="153855" PGL_stop="154833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="153855" e_stop="154833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="153855" e_stop="154833" e_length="979"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153855" stop="154679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153856" stop="154348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154025" stop="154833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTCTTCTATAATTTTTCTTAATAGAATAGATTAGAAGAATTCATAGGGGATTTAGTAAGAAAAAAATTAAATTAATGGAAAAGGAAGAAGATAAACCAGTTTTGGGATATCAAAAATCAGAATATTCTTATCAAACAAATCCTCAATTTTACCAATCAGACCCTCAATTTTATCAATATTACGAATATAATTACCCTGCAAGGCCACTACCTTATGTCTCCCCTGATGTAGATCAGGGGTTCTCATTTGGTAGAGTCATGCTTTGCCTAGTGGTATTTTTATTTTTATTTGCGATGATTATAAGTATGTTAACTATGATGATATTTATGACAATGAAACCTACATTTAATTTGGAATCGTTCGAGGTCCGCGCATTCAACTTATCAGGAAATGGCGGACCTGGAACGACGTTGAAAGCTAGTTGGGAGACGAAAGTATCGGTTAAAAATACAAACACTAGGTCATCAATACTTTTGAATCAAGTTGAAACATCGTTGGTGTATAGATATGTTGAACTAGACGTGTCTAACGTGGACCATATCGAGATTCAGAAGGATAGTAACGTTCAGATACTGGATGTGTTCTCTTTTCCTAGCTCGAAACGAACCTTTAACACGGAATCTGTGGTGAAAGAAATGGTTAATGATAGACAAAGAGGGCAAATTATGTTTGATTTGAAACTTGAGGTACTACTTATGGTTAAGTCTAATGTTTTTCATAAATCAGAGAAAATGCGTTTGTTTTGCGAAAGAATTACATTAGATTTTAAGAATAGTACTTCTAATATTCCAACATGGAATGGTAATAAACAAGAATGTGCATCAAGTTTTTGATTTTTTGATGTAATTATACTGTAAGAAAATAAATTTTATTATGTAGGTAAGAAATTAAGTTGAAGTTCGAATGTTTTATTATGTTATGTTTTCTTGTGCAAACCATTAACTCATGATAAAATGTCGTGTTTGTGTTATCTTTTT</gDNA_template>
            <first_frame> C  S  S  I  I  F  L  N  R  I  D  *  K  N  S  *  G  I  *  *  E  K  N  *  I  N  G  K  G  R  R  *  T  S  F  G  I  S  K  I  R  I  F  L  S  N  K  S  S  I  L  P  I  R  P  S  I  L  S  I  L  R  I  *  L  P  C  K  A  T  T  L  C  L  P  *  C  R  S  G  V  L  I  W  *  S  H  A  L  P  S  G  I  F  I  F  I  C  D  D  Y  K  Y  V  N  Y  D  D  I  Y  D  N  E  T  Y  I  *  F  G  I  V  R  G  P  R  I  Q  L  I  R  K  W  R  T  W  N  D  V  E  S  *  L  G  D  E  S  I  G  *  K  Y  K  H  *  V  I  N  T  F  E  S  S  *  N  I  V  G  V  *  I  C  *  T  R  R  V  *  R  G  P  Y  R  D  S  E  G  *  *  R  S  D  T  G  C  V  L  F  S  *  L  E  T  N  L  *  H  G  I  C  G  E  R  N  G  *  *  *  T  K  R  A  N  Y  V  *  F  E  T  *  G  T  T  Y  G  *  V  *  C  F  S  *  I  R  E  N  A  F  V  L  R  K  N  Y  I  R  F  *  E  *  Y  F  *  Y  S  N  M  E  W  *  *  T  R  M  C  I  K  F  L  I  F  *  C  N  Y  T  V  R  K  *  I  L  L  C  R  *  E  I  K  L  K  F  E  C  F  I  M  L  C  F  L  V  Q  T  I  N  S  *  *  N  V  V  F  V  L  S  F  </first_frame>
            <second_frame>  V  L  L  *  F  F  L  I  E  *  I  R  R  I  H  R  G  F  S  K  K  K  I  K  L  M  E  K  E  E  D  K  P  V  L  G  Y  Q  K  S  E  Y  S  Y  Q  T  N  P  Q  F  Y  Q  S  D  P  Q  F  Y  Q  Y  Y  E  Y  N  Y  P  A  R  P  L  P  Y  V  S  P  D  V  D  Q  G  F  S  F  G  R  V  M  L  C  L  V  V  F  L  F  L  F  A  M  I  I  S  M  L  T  M  M  I  F  M  T  M  K  P  T  F  N  L  E  S  F  E  V  R  A  F  N  L  S  G  N  G  G  P  G  T  T  L  K  A  S  W  E  T  K  V  S  V  K  N  T  N  T  R  S  S  I  L  L  N  Q  V  E  T  S  L  V  Y  R  Y  V  E  L  D  V  S  N  V  D  H  I  E  I  Q  K  D  S  N  V  Q  I  L  D  V  F  S  F  P  S  S  K  R  T  F  N  T  E  S  V  V  K  E  M  V  N  D  R  Q  R  G  Q  I  M  F  D  L  K  L  E  V  L  L  M  V  K  S  N  V  F  H  K  S  E  K  M  R  L  F  C  E  R  I  T  L  D  F  K  N  S  T  S  N  I  P  T  W  N  G  N  K  Q  E  C  A  S  S  F  *  F  F  D  V  I  I  L  *  E  N  K  F  Y  Y  V  G  K  K  L  S  *  S  S  N  V  L  L  C  Y  V  F  L  C  K  P  L  T  H  D  K  M  S  C  L  C  Y  L  F </second_frame>
            <third_frame>   F  F  Y  N  F  S  *  *  N  R  L  E  E  F  I  G  D  L  V  R  K  K  L  N  *  W  K  R  K  K  I  N  Q  F  W  D  I  K  N  Q  N  I  L  I  K  Q  I  L  N  F  T  N  Q  T  L  N  F  I  N  I  T  N  I  I  T  L  Q  G  H  Y  L  M  S  P  L  M  *  I  R  G  S  H  L  V  E  S  C  F  A  *  W  Y  F  Y  F  Y  L  R  *  L  *  V  C  *  L  *  *  Y  L  *  Q  *  N  L  H  L  I  W  N  R  S  R  S  A  H  S  T  Y  Q  E  M  A  D  L  E  R  R  *  K  L  V  G  R  R  K  Y  R  L  K  I  Q  T  L  G  H  Q  Y  F  *  I  K  L  K  H  R  W  C  I  D  M  L  N  *  T  C  L  T  W  T  I  S  R  F  R  R  I  V  T  F  R  Y  W  M  C  S  L  F  L  A  R  N  E  P  L  T  R  N  L  W  *  K  K  W  L  M  I  D  K  E  G  K  L  C  L  I  *  N  L  R  Y  Y  L  W  L  S  L  M  F  F  I  N  Q  R  K  C  V  C  F  A  K  E  L  H  *  I  L  R  I  V  L  L  I  F  Q  H  G  M  V  I  N  K  N  V  H  Q  V  F  D  F  L  M  *  L  Y  C  K  K  I  N  F  I  M  *  V  R  N  *  V  E  V  R  M  F  Y  Y  V  M  F  S  C  A  N  H  *  L  M  I  K  C  R  V  C  V  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="153886" stop="154689"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRRIHRGFSKKKIKLMEKEEDKPVLGYQKSEYSYQTNPQFYQSDPQFYQYYEYNYPARPLPYVSPDVDQGFSFGRVMLCLVVFLFLFAMIISMLTMMIFMTMKPTFNLESFEVRAFNLSGNGGPGTTLKASWETKVSVKNTNTRSSILLNQVETSLVYRYVELDVSNVDHIEIQKDSNVQILDVFSFPSSKRTFNTESVVKEMVNDRQRGQIMFDLKLEVLLMVKSNVFHKSEKMRLFCERITLDFKNSTSNIPTWNGNKQECASSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 291 chains have been computed
$ 
$ memory statistics:
$ 2476200 bytes spliced alignments in total
$ 141 spliced alignments have been stored
$ 17561 bytes was the average size of a spliced alignment
$ 40216 bytes predicted gene locations in total
$ 27 predicted gene locations have been stored
$ 1489 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 355 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:00:10
-->
