<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:11:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g51270" ref_strand="+" ref_description="C2_At3g51270">
      <seq>ctcaagccttcaaactttcggttaattttcttcagcaactcagtttttctcttctcgaagtttcaatctttctttacaaatcttccattaacaagtattagcaatcattaacagtaacaacagaggcaaagatgaagttggatgttaacgttttgagatacctttcgaaagatgatttcagggtccttactgctgttgagatgggaatgcgcaatcatgagattgtaccttgtgagctcattgaccggattgctcgcctcaagcatggaggcacatataaagtgttgaagaatttgctaaagcacaaattagtgcatcatgactcttctaaatatgatggatttcgactcacctatcttggttatgatttccttgcgataaagactttggttaatcgtgggatatttaatggagtgggtcgtcagattggtgttggaaaagagtctgatatttttgaggttgtaaaggaagatggcacagttcttgcaatgaagttgcacaggcttggtagggtttcttttagggcagtcaaatcaaaacgtgactatttgaggcatcgtagtagcttcaattggctgtacttatcgcgacttgctgccttgaaagagtttgcttttatgaaggcactagaagaacatggatttcctgttcctcaggctgtggattgcaatcgacattgtgtgattatgtcacttgtcccaggctatccacttgtgcaggttagggagctgctaaacccagacgtggtttttgaaacaatcattgctgctgttattcgtttggcagaacacgggcttattcactgtgactttaatgaatttaacataatgattgatgatgatgaaaaggtcaccataattgatttcccacaaatggtgtcagtctctcatcctaacgctcaaatgtactttgatcgtgatgtggagtgcatctataagttctttgcaaagcggtacaatatgtcctttgaagaaaatgaaaatgattctgatggtttggaggttgagatagatgaagttggtcggccccagttttctgaaataaacaagaacagcggtttcttggacaaagaacttgctgccagtggttttacgagaaaggatcaagatgagcttgaaaagttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="33310" stop="37137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33607" g_stop="33689" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.831"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33690" i_stop="33842" i_length="153">
            <donor d_prob="0.988" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33843" g_stop="33856" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="94" r_length="14" r_score="0.643"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33857" i_stop="34062" i_length="206">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34063" g_stop="34183" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="215" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34184" i_stop="34265" i_length="82">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34266" g_stop="34312" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="262" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34313" i_stop="34415" i_length="103">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34416" g_stop="34486" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="333" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34487" i_stop="34578" i_length="92">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34579" g_stop="34692" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="447" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34693" i_stop="34775" i_length="83">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34776" g_stop="34951" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="623" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34952" i_stop="35028" i_length="77">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="35029" g_stop="35117" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="712" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="35118" i_stop="35833" i_length="716">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.521" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35834" g_stop="35951" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="830" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="35952" i_stop="36174" i_length="223">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36175" g_stop="36248" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="831" r_stop="904" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="36249" i_stop="36397" i_length="149">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="36398" g_stop="36445" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="905" r_stop="952" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="36446" i_stop="36666" i_length="221">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="36667" g_stop="36835" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="953" r_stop="1121" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="C2_At3g51270" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>1124</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g51270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33607" e_stop="33689"/>
          <exon e_start="33843" e_stop="33856"/>
          <exon e_start="34063" e_stop="34183"/>
          <exon e_start="34266" e_stop="34312"/>
          <exon e_start="34416" e_stop="34486"/>
          <exon e_start="34579" e_stop="34692"/>
          <exon e_start="34776" e_stop="34951"/>
          <exon e_start="35029" e_stop="35117"/>
          <exon e_start="35834" e_stop="35951"/>
          <exon e_start="36175" e_stop="36248"/>
          <exon e_start="36398" e_stop="36445"/>
          <exon e_start="36667" e_stop="36835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAAGTAAGTATTGTATTAATTCTATCAATTAAACTTTTTTTTTTTTTAGAAATTTAGTTTAGTATTTTGTTGTGTTTGGAGCCATAGTTGTTGTGTATAGAACAGGAATAAAAATCAAAGATTCAATGATTTTTGTGTAGTAAATGATATGGGGTTTCGACCCTTTACATGTTTCTTGTTTATCTTTTGTAAAGTTATGATCTTTTTTAGGTTCAGATGTTATGGTGTTCAAGCTACTGTAATTGGTTCCTTTTATCTTATCTCTGTCTGTCCTAAAATTAACTTTGTATAGTAGCTCTTGGAGCTGATTATAATCCTCAAACTTCTCAATATTTTGTCTAAATTGCATAATCTTTGGTGGGTTTTTTGTATAAAGGTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAATGTCTGTAAAATCGTATACACCCTTTTCGACTTTGATTTGTTTTCTTTTCAGTTTATGATGGTTTGTGTTTTGGCTTTTTCAGCATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAAGTTAGTCCATTTTTCTGAATTGGAAATACATTAGCTGTTGTGTTGTTTTGTTATTTTTTTTTTCTGTTTTTTTGTTTTTATAGTTATGTTTAATTGTTTTTAGGCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAATGTGAGTGTTTTGATTGTTTTTGTTTTGTTAAAAGCTACAGTATTGGGGCTACCTTTTTGTTCTGAATTTTATTTCTTAACATTGCTGTGTAGATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTGGTAAATTTTCATCAATATTCTTGTGTTTAACTGTTGTTTTTGTTACTTTATAATTTATACTTAAATGTATCCATTTTTTATAGATATTTTTGAGGTTGTAAAGGAAGATGGCACAGTTCTTGCAATGAAGTTGCACAGACTTGGTAGGGTTTCTTTTAGGGCAGTCAAATCGAAACGTGACTATTTGAGGCATCGTAGTAGCTACAATTGGCTGTACTTGTCCCGACTTGCTGCTTTGAAAGAGTTTGCTTTTATGAAGGTAAGTGCAGCTCTCTAATTTGCCGTATCGTCTTTGAATTAGGAGATTTGTTTGATATTAAACACTTGTGTAAACAGGCACTAGAAGAACATGGATTTCCTGTTCCTCAGGCTGTGGATTGCAACCGACATTGTGTGATTATGTCACTTGTCCCAGGCTATCCACTGTAAGTATTTCACAAATATAGTAACGATGGAGATTATCTGTTATACTAGAGTTTCCTAATATCTCTGAACTTCTGTAAACTTGGTGTTATTACTTAATTACGTACCAGTACATATGCAACATTTTTAGTCTATACCTAGCTTTATAATATTAGCCATAAGGATGCGAGAAGAGTTGTTTATTTCTAATCACCATCATAACCTGGAAAATATAGTTTTTATGGTATTTGAGGTTTAGTATAACCATAATTTTTCAGTAATTGAGTTTTTGTATAGTAGTAATTGGATTCTCCATAGCTTGCTTCATAGCAGTTCTCCTATCATGTTCTGTGTTTTTCCTTTCTTAAGTATGTTAGCTTCATCTACCTTTGTATGATCAAATTATGTGGCTAAACTGACCTTTGACCTTAACTAAATTGGTAATGTTAATTTTTCTTCCCAAATACTATTTAGGGATTCTCGCTCCCGCATAAACCCTATAATCTTGTCTAATCTATTTTGTGCTTATAGCAACAACTCATTGTAATAAATGGAATGCTTGGATACTCTATTAATAGCATTATGAGAATTATGTTAATCTGTAAAAGAAATTGTTATCTATGAACTTAACCTTAGAAAAAGCATATTCTTGATCTTCGGCTAACAGTGCATTATTATTGTATTTTTAGTTTCTTCCTAGAAATAGTGGCTGTAGAACTTATAGAAATGGTTATAATAGTGTGCAGGTTAGGGAGCTGCAAAACCCAGATGTGGTTTTTGAAACAATCATCGCTGCTGTTATTCGTTTGGCAGAACACGGGCTTATTCACTGTGATTTTAATGAATTTAACATAATGGTATCTTCTATTCCTTCTTTGATTTATTTAAGGTTATCATTATATTTAACTGCTATATTTTTTTGTTCCTTACGAGCTTGGTTCGCCAGTGTGCAAGTGGAATATGTTCTTCCATTTTTCATTTCTTTGCCCGTTTCAATTGCTCTGAATTTCTTTGTATAGGCTTATATTAGACCTGTTCGTCAGTTTGCTGATAATTCTTATGTACCTTATTGGATTACAGATTGATGATGATGAAAAGGTCACCATAATTGATTTCCCACAAATGGTGTCAGTCTCTCATCCTAACGCTCAGATGTAAGATATTTTCCCATCTTATTCCATCTAAACAGTCTTTCAGTATTCTGTTTTTCTTGTTAGTTCCCTCCCTTCATCTGGACCACTGTGTGCTATAGATTGTGCTCTTAGAAAAATTGCTGTCCCTGATACAAGTTTCTACATGTTAGGTACTTTGATCGTGATGTGGAGTGCATCTATAAGTTCTTTGCAAAGCGGTTAGTGAATTTACTCCTTTCTGTTTATTTGGAGAAGTCCATCTGTTTGACCAAGACGCTACCTGTGAAGACTTCTTCCACTTTATGATGTATTTTTGGGACTCATCTTTTGGAGTCACTTTTTTATCCTGATAACTATTTTGCTGCTACATATGAATTTGAGACGCTGAATTTTCCTTTGAAGCGTGAGCTCATAGTTTATCTCTCTTACCTATCTTTAGGTACAATATGTCCTTTGATGAAAATGAAAATGATTCTGATGGTTTGGAGGTTGACATAAATGAAGTTGGTCGCCCCCAATTTTCTGAAATAAACAAGAACAGCGGTTTCTTGGACAAAGAACTTGCTGCCAGTGGTTTTACGAGAAAGGATCAAGATGAGCTTGAAAAG</genome_strand>
        <mrna_strand>CTCAAGCCTTCAAACTTTCGGTTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTCGAAGTTTC---AATCTTTCTTTACAAA.........................................................................................................................................................TCTTCCATTAACAA..............................................................................................................................................................................................................GTATTAGCAATCATTAACAGTAACAACAGAGGCAAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCTGTTGAGATGGGAATGCGCAAT..................................................................................CATGAGATTGTACCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAA.......................................................................................................GCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAAT............................................................................................ATGATGGATTTCGACTCACCTATCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATATTTAATGGAGTGGGTCGTCAGATTGGTGTTGGAAAAGAGTCTG...................................................................................ATATTTTTGAGGTTGTAAAGGAAGATGGCACAGTTCTTGCAATGAAGTTGCACAGGCTTGGTAGGGTTTCTTTTAGGGCAGTCAAATCAAAACGTGACTATTTGAGGCATCGTAGTAGCTTCAATTGGCTGTACTTATCGCGACTTGCTGCCTTGAAAGAGTTTGCTTTTATGAAG.............................................................................GCACTAGAAGAACATGGATTTCCTGTTCCTCAGGCTGTGGATTGCAATCGACATTGTGTGATTATGTCACTTGTCCCAGGCTATCCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAGGTTAGGGAGCTGCTAAACCCAGACGTGGTTTTTGAAACAATCATTGCTGCTGTTATTCGTTTGGCAGAACACGGGCTTATTCACTGTGACTTTAATGAATTTAACATAATG...............................................................................................................................................................................................................................ATTGATGATGATGAAAAGGTCACCATAATTGATTTCCCACAAATGGTGTCAGTCTCTCATCCTAACGCTCAAAT.....................................................................................................................................................GTACTTTGATCGTGATGTGGAGTGCATCTATAAGTTCTTTGCAAAGCG.............................................................................................................................................................................................................................GTACAATATGTCCTTTGAAGAAAATGAAAATGATTCTGATGGTTTGGAGGTTGAGATAGATGAAGTTGGTCGGCCCCAGTTTTCTGAAATAAACAAGAACAGCGGTTTCTTGGACAAAGAACTTGCTGCCAGTGGTTTTACGAGAAAGGATCAAGATGAGCTTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1172" ref_strand="+" ref_description="T1172">
      <seq>cagtttctgaggaaagtgaagctgctgattcttcaaaaaagactcagcaagcaaactccattactactttgtcatctagaagaccagctgtacttgctgatgggacatatgctactcaaagtgctgcatctgaaactgctttctctcccccgacagttgttcaaggatctttaaccactggaaacttgagatccctccttctcactggtgatttcttcttgggagcagttgttgcttgtacactgactaagctcattctgaggctggaagaagttcagccatcaaaacttgaattgaacaaagctacaacaaatgcattactgatcatggtctcaatgatacagctagggcagtctcatgctcttcctcacccaattgacaatgattctcatgacagaatagttctttgcataagattgctctgtaatacgggcaatgaggttaggaagatctggttgagctcttgtcgcgagagttttgttaatatgctttctgataaacaactacgagagacagaggagatcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0130I12-Eskqt/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0130I12.1" temp_strand="+" temp_description="C01HBa0130I12.1  AC225022.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0130I12 upload_account_name:manual">
        <position start="57938" stop="59066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58238" g_stop="58764" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0130I12.1" gen_strand="+" ref_id="T1172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0130I12.1" gen_strand="+"/>
        <rDNA rDNA_id="T1172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58238" e_stop="58764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTCTGAGGAAAGTGAAGCTGCTGATTCTTCAAAAAAGACTCAGCAAGCAAACTCCATTACTACTTTGTCATCTAGAAGACCAGCTGTACTTGCTGATGGGACATATGCTACTCAAAGTGCTGCATCTGAAACTGCTTTCTCTCCCCCGACAGTTGTTCAAGGATCTTTAACCACTGGAAACTTGAGATCCCTCCTTCTCACTGGTGATTTCTTCTTGGGAGCAGTTGTTGCTTGTACACTGACTAAGCTCATTCTGAGGCTGGAAGAAGTTCAGCCATCAAAACTTGAATTGAACAAAGCTACAACAAATGCATTACTGATCATGGTCTCAATGATACAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAA</genome_strand>
        <mrna_strand>CAGTTTCTGAGGAAAGTGAAGCTGCTGATTCTTCAAAAAAGACTCAGCAAGCAAACTCCATTACTACTTTGTCATCTAGAAGACCAGCTGTACTTGCTGATGGGACATATGCTACTCAAAGTGCTGCATCTGAAACTGCTTTCTCTCCCCCGACAGTTGTTCAAGGATCTTTAACCACTGGAAACTTGAGATCCCTCCTTCTCACTGGTGATTTCTTCTTGGGAGCAGTTGTTGCTTGTACACTGACTAAGCTCATTCTGAGGCTGGAAGAAGTTCAGCCATCAAAACTTGAATTGAACAAAGCTACAACAAATGCATTACTGATCATGGTCTCAATGATACAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="33607" PGL_stop="36835"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33607" e_stop="33689"/>
            <exon e_start="33843" e_stop="33856"/>
            <exon e_start="34063" e_stop="34183"/>
            <exon e_start="34266" e_stop="34312"/>
            <exon e_start="34416" e_stop="34486"/>
            <exon e_start="34579" e_stop="34692"/>
            <exon e_start="34776" e_stop="34951"/>
            <exon e_start="35029" e_stop="35117"/>
            <exon e_start="35834" e_stop="35951"/>
            <exon e_start="36175" e_stop="36248"/>
            <exon e_start="36398" e_stop="36445"/>
            <exon e_start="36667" e_stop="36835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="0.831"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.643"/>
          <exon-intron don_prob="0.921" acc_prob="1.000" e_score="0.942"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="0.000" acc_prob="0.733" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="0.974"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="0.966"/>
          <exon-intron don_prob="0.967" acc_prob="0.521" e_score="0.989"/>
          <exon-intron don_prob="0.980" acc_prob="0.996" e_score="0.966"/>
          <exon-intron don_prob="0.999" acc_prob="0.772" e_score="0.986"/>
          <exon-intron don_prob="0.870" acc_prob="0.866" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.831">
            <gDNA_exon_boundary e_start="33607" e_stop="33689" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33690" i_stop="33842" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="0.643">
            <gDNA_exon_boundary e_start="33843" e_stop="33856" e_length="14"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33857" i_stop="34062" i_length="206"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="34063" e_stop="34183" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.921" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34184" i_stop="34265" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="34266" e_stop="34312" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34313" i_stop="34415" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34416" e_stop="34486" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.733">
            <gDNA_intron_boundary i_start="34487" i_stop="34578" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="34579" e_stop="34692" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34693" i_stop="34775" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="0.966">
            <gDNA_exon_boundary e_start="34776" e_stop="34951" e_length="176"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="34952" i_stop="35028" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="35029" e_stop="35117" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.967" acc_prob="0.521">
            <gDNA_intron_boundary i_start="35118" i_stop="35833" i_length="716"/>
          </intron>
          <exon e_serial="9" e_score="0.966">
            <gDNA_exon_boundary e_start="35834" e_stop="35951" e_length="118"/>
          </exon>
          <intron i_serial="9" don_prob="0.980" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35952" i_stop="36174" i_length="223"/>
          </intron>
          <exon e_serial="10" e_score="0.986">
            <gDNA_exon_boundary e_start="36175" e_stop="36248" e_length="74"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.772">
            <gDNA_intron_boundary i_start="36249" i_stop="36397" i_length="149"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="36398" e_stop="36445" e_length="48"/>
          </exon>
          <intron i_serial="11" don_prob="0.870" acc_prob="0.866">
            <gDNA_intron_boundary i_start="36446" i_stop="36666" i_length="221"/>
          </intron>
          <exon e_serial="12" e_score="0.970">
            <gDNA_exon_boundary e_start="36667" e_stop="36835" e_length="169"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33607" stop="33689"/>
              <exon start="33843" stop="33856"/>
              <exon start="34063" stop="34183"/>
              <exon start="34266" stop="34312"/>
              <exon start="34416" stop="34486"/>
              <exon start="34579" stop="34692"/>
              <exon start="34776" stop="34951"/>
              <exon start="35029" stop="35117"/>
              <exon start="35834" stop="35951"/>
              <exon start="36175" stop="36248"/>
              <exon start="36398" stop="36445"/>
              <exon start="36667" stop="36835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g51270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAGCCTTCAATTTTTCGAGTAATTTTCTTCAGCAACTCAGTTTTTCTCTTCTTGAAGTTTCAATAATCTTCCATTAACAA : TCGACCCTTTACAT : GTGTTAGCAATCATTAACAGCAGCAAAAGAGGATAAGATGAAGTTGGATGTTAACGTTTTGAGATACCTTTCGAAAGATGATTTCAGGGTCCTTACTGCCGTTGAGATGGGAATGCGCAAT : CATGAGATTGTGCCTTGTGAGCTCATTGACCGGATTGCTCGCCTCAA : GCATGGAGGCACATATAAAGTGTTGAAGAATTTGCTAAAGCACAAATTAGTGCATCATGACTCTTCTAAAT : ATGATGGATTTCGACTCACCTACCTTGGTTATGATTTCCTTGCGATAAAGACTTTGGTTAATCGTGGGATGTTTAATGGAGTGGGTCGTCAAATTGGTGTTGGAAAAGAGTCTG : ATATTTTTGAGGTTGTAAAGGAAGATGGCACAGTTCTTGCAATGAAGTTGCACAGACTTGGTAGGGTTTCTTTTAGGGCAGTCAAATCGAAACGTGACTATTTGAGGCATCGTAGTAGCTACAATTGGCTGTACTTGTCCCGACTTGCTGCTTTGAAAGAGTTTGCTTTTATGAAG : GCACTAGAAGAACATGGATTTCCTGTTCCTCAGGCTGTGGATTGCAACCGACATTGTGTGATTATGTCACTTGTCCCAGGCTATCCACT : TGTGCAGGTTAGGGAGCTGCAAAACCCAGATGTGGTTTTTGAAACAATCATCGCTGCTGTTATTCGTTTGGCAGAACACGGGCTTATTCACTGTGATTTTAATGAATTTAACATAATG : ATTGATGATGATGAAAAGGTCACCATAATTGATTTCCCACAAATGGTGTCAGTCTCTCATCCTAACGCTCAGAT : GTACTTTGATCGTGATGTGGAGTGCATCTATAAGTTCTTTGCAAAGCG : GTACAATATGTCCTTTGATGAAAATGAAAATGATTCTGATGGTTTGGAGGTTGACATAAATGAAGTTGGTCGCCCCCAATTTTCTGAAATAAACAAGAACAGCGGTTTCTTGGACAAAGAACTTGCTGCCAGTGGTTTTACGAGAAAGGATCAAGATGAGCTTGAAAAG</gDNA_template>
            <first_frame> Q  K  P  S  I  F  R  V  I  F  F  S  N  S  V  F  L  F  L  K  F  Q  *  S  S  I  N  N :   R  P  F  T   : C  V  S  N  H  *  Q  Q  Q  K  R  I  R  *  S  W  M  L  T  F  *  D  T  F  R  K  M  I  S  G  S  L  L  P  L  R  W  E  C  A  I :   M  R  L  C  L  V  S  S  L  T  G  L  L  A  S   : S  M  E  A  H  I  K  C  *  R  I  C  *  S  T  N  *  C  I  M  T  L  L  N  :  M  M  D  F  D  S  P  T  L  V  M  I  S  L  R  *  R  L  W  L  I  V  G  C  L  M  E  W  V  V  K  L  V  L  E  K  S  L  :  I  F  L  R  L  *  R  K  M  A  Q  F  L  Q  *  S  C  T  D  L  V  G  F  L  L  G  Q  S  N  R  N  V  T  I  *  G  I  V  V  A  T  I  G  C  T  C  P  D  L  L  L  *  K  S  L  L  L  *  R :   H  *  K  N  M  D  F  L  F  L  R  L  W  I  A  T  D  I  V  *  L  C  H  L  S  Q  A  I  H   : L  C  R  L  G  S  C  K  T  Q  M  W  F  L  K  Q  S  S  L  L  L  F  V  W  Q  N  T  G  L  F  T  V  I  L  M  N  L  T  *  * :   L  M  M  M  K  R  S  P  *  L  I  S  H  K  W  C  Q  S  L  I  L  T  L  R   : C  T  L  I  V  M  W  S  A  S  I  S  S  L  Q  S   : G  T  I  C  P  L  M  K  M  K  M  I  L  M  V  W  R  L  T  *  M  K  L  V  A  P  N  F  L  K  *  T  R  T  A  V  S  W  T  K  N  L  L  P  V  V  L  R  E  R  I  K  M  S  L  K   </first_frame>
            <second_frame>  K  S  L  Q  F  F  E  *  F  S  S  A  T  Q  F  F  S  S  *  S  F  N  N  L  P  L  T   : I  D  P  L  H  :  V  L  A  I  I  N  S  S  K  R  G  *  D  E  V  G  C  *  R  F  E  I  P  F  E  R  *  F  Q  G  P  Y  C  R  *  D  G  N  A  Q   : S  *  D  C  A  L  *  A  H  *  P  D  C  S  P  Q  :  A  W  R  H  I  *  S  V  E  E  F  A  K  A  Q  I  S  A  S  *  L  F  *  I :   *  W  I  S  T  H  L  P  W  L  *  F  P  C  D  K  D  F  G  *  S  W  D  V  *  W  S  G  S  S  N  W  C  W  K  R  V  * :   Y  F  *  G  C  K  G  R  W  H  S  S  C  N  E  V  A  Q  T  W  *  G  F  F  *  G  S  Q  I  E  T  *  L  F  E  A  S  *  *  L  Q  L  A  V  L  V  P  T  C  C  F  E  R  V  C  F  Y  E   : G  T  R  R  T  W  I  S  C  S  S  G  C  G  L  Q  P  T  L  C  D  Y  V  T  C  P  R  L  S  T  :  C  A  G  *  G  A  A  K  P  R  C  G  F  *  N  N  H  R  C  C  Y  S  F  G  R  T  R  A  Y  S  L  *  F  *  *  I  *  H  N   : D  *  *  *  *  K  G  H  H  N  *  F  P  T  N  G  V  S  L  S  S  *  R  S  D  :  V  L  *  S  *  C  G  V  H  L  *  V  L  C  K  A  :  V  Q  Y  V  L  *  *  K  *  K  *  F  *  W  F  G  G  *  H  K  *  S  W  S  P  P  I  F  *  N  K  Q  E  Q  R  F  L  G  Q  R  T  C  C  Q  W  F  Y  E  K  G  S  R  *  A  *  K  </second_frame>
            <third_frame>   K  A  F  N  F  S  S  N  F  L  Q  Q  L  S  F  S  L  L  E  V  S  I  I  F  H  *  Q  :  S  T  L  Y  M :   C  *  Q  S  L  T  A  A  K  E  D  K  M  K  L  D  V  N  V  L  R  Y  L  S  K  D  D  F  R  V  L  T  A  V  E  M  G  M  R  N  :  H  E  I  V  P  C  E  L  I  D  R  I  A  R  L  K :   H  G  G  T  Y  K  V  L  K  N  L  L  K  H  K  L  V  H  H  D  S  S  K   : Y  D  G  F  R  L  T  Y  L  G  Y  D  F  L  A  I  K  T  L  V  N  R  G  M  F  N  G  V  G  R  Q  I  G  V  G  K  E  S   : D  I  F  E  V  V  K  E  D  G  T  V  L  A  M  K  L  H  R  L  G  R  V  S  F  R  A  V  K  S  K  R  D  Y  L  R  H  R  S  S  Y  N  W  L  Y  L  S  R  L  A  A  L  K  E  F  A  F  M  K  :  A  L  E  E  H  G  F  P  V  P  Q  A  V  D  C  N  R  H  C  V  I  M  S  L  V  P  G  Y  P  L :   V  Q  V  R  E  L  Q  N  P  D  V  V  F  E  T  I  I  A  A  V  I  R  L  A  E  H  G  L  I  H  C  D  F  N  E  F  N  I  M  :  I  D  D  D  E  K  V  T  I  I  D  F  P  Q  M  V  S  V  S  H  P  N  A  Q  M :   Y  F  D  R  D  V  E  C  I  Y  K  F  F  A  K  R :   Y  N  M  S  F  D  E  N  E  N  D  S  D  G  L  E  V  D  I  N  E  V  G  R  P  Q  F  S  E  I  N  K  N  S  G  F  L  D  K  E  L  A  A  S  G  F  T  R  K  D  Q  D  E  L  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34070" stop="34183"/>
                    <exon start="34266" stop="34312"/>
                    <exon start="34416" stop="34486"/>
                    <exon start="34579" stop="34692"/>
                    <exon start="34776" stop="34951"/>
                    <exon start="35029" stop="35117"/>
                    <exon start="35834" stop="35951"/>
                    <exon start="36175" stop="36248"/>
                    <exon start="36398" stop="36445"/>
                    <exon start="36667" stop="36835"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLTAAKEDKMKLDVNVLRYLSKDDFRVLTAVEMGMRNHEIVPCELIDRIARLKHGGTYKVLKNLLKHKLVHHDSSKYDGFRLTYLGYDFLAIKTLVNRGMFNGVGRQIGVGKESDIFEVVKEDGTVLAMKLHRLGRVSFRAVKSKRDYLRHRSSYNWLYLSRLAALKEFAFMKALEEHGFPVPQAVDCNRHCVIMSLVPGYPLVQVRELQNPDVVFETIIAAVIRLAEHGLIHCDFNEFNIMIDDDEKVTIIDFPQMVSVSHPNAQMYFDRDVECIYKFFAKRYNMSFDENENDSDGLEVDINEVGRPQFSEINKNSGFLDKELAASGFTRKDQDELEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="58238" PGL_stop="58764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58238" e_stop="58764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58238" e_stop="58764" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58238" stop="58764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1172" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTTCTGAGGAAAGTGAAGCTGCTGATTCTTCAAAAAAGACTCAGCAAGCAAACTCCATTACTACTTTGTCATCTAGAAGACCAGCTGTACTTGCTGATGGGACATATGCTACTCAAAGTGCTGCATCTGAAACTGCTTTCTCTCCCCCGACAGTTGTTCAAGGATCTTTAACCACTGGAAACTTGAGATCCCTCCTTCTCACTGGTGATTTCTTCTTGGGAGCAGTTGTTGCTTGTACACTGACTAAGCTCATTCTGAGGCTGGAAGAAGTTCAGCCATCAAAACTTGAATTGAACAAAGCTACAACAAATGCATTACTGATCATGGTCTCAATGATACAGCTAGGGCAGTCTCATGCTCTTCCTCACCCAATTGACAATGATTCTCATGACAGAATAGTTCTTTGCATAAGATTGCTCTGTAATACGGGCAATGAGGTTAGGAAGATCTGGTTGAGCTCTTGTCGCGAGAGTTTTGTTAATATGCTTTCTGATAAACAACTACGAGAGACAGAGGAGATCAAA</gDNA_template>
            <first_frame> Q  F  L  R  K  V  K  L  L  I  L  Q  K  R  L  S  K  Q  T  P  L  L  L  C  H  L  E  D  Q  L  Y  L  L  M  G  H  M  L  L  K  V  L  H  L  K  L  L  S  L  P  R  Q  L  F  K  D  L  *  P  L  E  T  *  D  P  S  F  S  L  V  I  S  S  W  E  Q  L  L  L  V  H  *  L  S  S  F  *  G  W  K  K  F  S  H  Q  N  L  N  *  T  K  L  Q  Q  M  H  Y  *  S  W  S  Q  *  Y  S  *  G  S  L  M  L  F  L  T  Q  L  T  M  I  L  M  T  E  *  F  F  A  *  D  C  S  V  I  R  A  M  R  L  G  R  S  G  *  A  L  V  A  R  V  L  L  I  C  F  L  I  N  N  Y  E  R  Q  R  R  S   </first_frame>
            <second_frame>  S  F  *  G  K  *  S  C  *  F  F  K  K  D  S  A  S  K  L  H  Y  Y  F  V  I  *  K  T  S  C  T  C  *  W  D  I  C  Y  S  K  C  C  I  *  N  C  F  L  S  P  D  S  C  S  R  I  F  N  H  W  K  L  E  I  P  P  S  H  W  *  F  L  L  G  S  S  C  C  L  Y  T  D  *  A  H  S  E  A  G  R  S  S  A  I  K  T  *  I  E  Q  S  Y  N  K  C  I  T  D  H  G  L  N  D  T  A  R  A  V  S  C  S  S  S  P  N  *  Q  *  F  S  *  Q  N  S  S  L  H  K  I  A  L  *  Y  G  Q  *  G  *  E  D  L  V  E  L  L  S  R  E  F  C  *  Y  A  F  *  *  T  T  T  R  D  R  G  D  Q  </second_frame>
            <third_frame>   V  S  E  E  S  E  A  A  D  S  S  K  K  T  Q  Q  A  N  S  I  T  T  L  S  S  R  R  P  A  V  L  A  D  G  T  Y  A  T  Q  S  A  A  S  E  T  A  F  S  P  P  T  V  V  Q  G  S  L  T  T  G  N  L  R  S  L  L  L  T  G  D  F  F  L  G  A  V  V  A  C  T  L  T  K  L  I  L  R  L  E  E  V  Q  P  S  K  L  E  L  N  K  A  T  T  N  A  L  L  I  M  V  S  M  I  Q  L  G  Q  S  H  A  L  P  H  P  I  D  N  D  S  H  D  R  I  V  L  C  I  R  L  L  C  N  T  G  N  E  V  R  K  I  W  L  S  S  C  R  E  S  F  V  N  M  L  S  D  K  Q  L  R  E  T  E  E  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0130I12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58240" stop="58764"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSEESEAADSSKKTQQANSITTLSSRRPAVLADGTYATQSAASETAFSPPTVVQGSLTTGNLRSLLLTGDFFLGAVVACTLTKLILRLEEVQPSKLELNKATTNALLIMVSMIQLGQSHALPHPIDNDSHDRIVLCIRLLCNTGNEVRKIWLSSCRESFVNMLSDKQLRETEEIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 70 chains have been computed
$ 
$ memory statistics:
$ 4192 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2096 bytes was the average size of a spliced alignment
$ 7056 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3528 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 71 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:11:40
-->
