<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:33:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568127" ref_strand="+" ref_description="SGN-U568127 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157341509|emb|CAO62064.1| (e_value=2e-124) unnamed; (*ATH) AT2G44150.1 (e_value=2e-116)  Symbol: None | SET domain-containing protein (ASHH3), low similarity to huntingtin interacting protein 1 (Homo sapiens) GI:12697196; contains Pfam profile PF00856: SET domain; identical to cDNA ASH1-like protein 3 (ASHH3) partial cds GI:15488419 | c... ; (*SWP) sp|Q945S8|ASHH3_ARATH (e_value=2e-115) Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3; ">
      <seq>aagcattctctccctccctctcttctctattgctttttgctgctcggagccttttttttctccggcaattgccggcgacgacgaccatttcccgccgataaaggctacagtaaatgagtgttgctacttgattgagcccatgcctgctacacctatgaagaagagtgctacccgtggtgggattgggaatgtattcaacaaattaacaagcaaaattggagatcccgttgactttgaacttccagattggttgagtaaatggcaacccactccctatccctatacctctataagacgaaatatatacctcaccaataagggtaagcggcggctagaagatgatggcatatcttgtacctgcagttcaacagcagaatcttcagacgtgtgtggcatggattgcctttgtagcatgctatggtctagctgcacctcgggatgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaatagtgaagactgagaaatgtggcactgggattgtggcagatgaagatatcaagacaaaagagtttgttgtagagtatgttggagaagttattgatgacaagacatgtgaagagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaatagggatatggtgattgatgccacttataagggaaacaaatccacatacattaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagaatagaattggcatatttgcaacgcgtgacattaaaaggggcgagcatctgacctacgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccaggtagctgcgccctttcccaaagagaaagtactgctatcggcaaaacataaaaacacacaacaatttcaaactctatgtggactagagcttaaagaaaggcaacacgaggatcatgagtaatatatgtgaagctgaaacagacctactttttctgaggattctcaaactgaagttcccccaaaaggaaattggagttctgactctgctcggaaaatccagcatcctcggaattgcacaggtcaaattataagaataattcgctattctgaccagagtcctgttgattcactggagtcacgaatacctgatgtttccagttcctttggaatcataaaacagtttgacagaatcaccaaaaaacatttgatcatgtttgaagacggtagtactgagcaccttgacttgtcaaaagaagattggcgattttgtaactttgcttaatcgggtcttaaactgtcgaaataaagatatacatgattcaacctcagtagctgatacgcgatatattcttaacagtccaaaattgcaaagtatcctctgcctttgctcctgctgtacaaatgtgcaaagtttcattttacatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="206" stop="10376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="515" g_stop="574" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="163" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="575" i_stop="2012" i_length="1438">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2013" g_stop="2148" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="299" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2149" i_stop="2355" i_length="207">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2356" g_stop="2467" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="411" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2468" i_stop="3069" i_length="602">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3070" g_stop="3169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="511" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3170" i_stop="5212" i_length="2043">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5213" g_stop="5291" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="590" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5292" i_stop="5381" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.275" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5382" g_stop="5553" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="762" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5554" i_stop="5680" i_length="127">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5681" g_stop="5761" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="843" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5762" i_stop="5876" i_length="115">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="5877" g_stop="6057" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="844" r_stop="1024" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="6058" i_stop="6571" i_length="514">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="6572" g_stop="6679" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1025" r_stop="1132" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="6680" i_stop="7709" i_length="1030">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="7710" g_stop="7737" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1133" r_stop="1160" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="7827" g_stop="7917" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1161" r_stop="1251" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="7918" i_stop="9129" i_length="1212">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="9130" g_stop="9220" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1252" r_stop="1342" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="9221" i_stop="9315" i_length="95">
            <donor d_prob="0.195" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="9316" g_stop="9394" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1343" r_stop="1421" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="9395" i_stop="9931" i_length="537">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="9932" g_stop="10076" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1422" r_stop="1564" r_length="143" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-U568127" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1463</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="515" e_stop="574"/>
          <exon e_start="2013" e_stop="2148"/>
          <exon e_start="2356" e_stop="2467"/>
          <exon e_start="3070" e_stop="3169"/>
          <exon e_start="5213" e_stop="5291"/>
          <exon e_start="5382" e_stop="5553"/>
          <exon e_start="5681" e_stop="5761"/>
          <exon e_start="5877" e_stop="6057"/>
          <exon e_start="6572" e_stop="6679"/>
          <exon e_start="7710" e_stop="7737"/>
          <exon e_start="7827" e_stop="7917"/>
          <exon e_start="9130" e_stop="9220"/>
          <exon e_start="9316" e_stop="9394"/>
          <exon e_start="9932" e_stop="10076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACAGTGAATGAGTGTTGCTACTTGATTGAGCCCATGCCTGCTACACCTATGAAGAAGGTTTAGAATCGATTTTCTTCCATGTTATATTCTTTATTCAGCATAATATTCATATCCAGTTTTATTGCAAAGGATGTTATATTGTTTGGTGTACCATTGTCGATTATGGTGCCACATACTTGAATCTAGACAATATTTTGCTTTCTCGTGATAAAGGCCTGTGCTCCTTTTCAGTTCTATTAGTAAGTTTGTGGTTTTGGCATTTCTTTTTTTCCATCTCTCTTTTCTTTGTTATTATTTCTTGTTAGAGATATCTCACTCATGTAGTGAATCTTACTTTAATTTGAATAATATGCAGCAATTGATAACAGTGTGCTTTTACTTATTGATGCCCTGCTAGCTAAAGTAGTGGATTCTTTCGGTCCTTGTATTTCACACATATTCATTGCACATATCTTTGTTTAGTCTGAAAAATGATAAATTAGTGAAGGAAGGTACAAAAACATGAAGTGATTGGTAAAAGGGGTAAAATGTCACTTTAAATGTGTCGGTAGGTTGTTATGACCTTGAATATTTCACATATTTATTCATGGCCTTCTATTTCCGTCCTATTTATTCGAAAGATGTCAAAATTTTAAATAAGGCACTAATAGCTTCATTAATTAATTAAAAGGGGGGGGGGGAGGTATCACCTAAGGCTAAAGAAAACGCTCCTCTAAGAAATCTAAAGCAAAGAAAATAGGATATCCCAGTAATATTTTACTACATTAAAACAGTACTGCTCTAGTTTTAAATGATATGTCAATCATTTAAAACTTATTCTTTGGTTAAGGATCCTTTTTGAAGTAATGTATGAGTATGCTCGCACCTAAACGCGTAACCCCGTGGTCAATGAAGTGGGTTGAGAACCAGGAGGTTCAAGTTCGAATTTCAATGGAGGCAAAAACACTAGGTAATCTCTTCCCATATGTCCAAGCCTTGGTGGTAGTTACCTGTGCTGGTGGGAATTAGCATGTACCCAATGGAATTTGTTGAGGTGCACTCAAGATGGCCTGCAACACAGTATATAAAATTTTTTTTACCACTGACCAAACACAGACTCTTTCTTGTTGCTATCTATTATATGCGGCTGCACACCTCATTTGCTGTTGTAGACAAATTGTCCCTAATCTACTTTTCTGATTTTTTCTGGCTTAGCTATTCTTTTATTGGTATATCCTGATTAGAAGGATCCATTATATATTTTCTGTTTTCTTATTTGTTTTTGCAGAGCTATTCCTTTATTTTAAAATTTGGTATTTTATAGTTTTAGCAAGGGTAAAGCCTGAGTAGTGTAATGGTGGAAACATGTCTGCTAAAAATCCTATGAGAATGCTGATATCTTGTTCTTATATGATTGTTAATGAGCTTCTTCTTATGGAGTATGGTGCGTGCATGTGTTTATGTTTGTGATCTCAACATCCTCTTAATATGCATTTTGTTTTCTTTTCCTGTACAGAGTGCTACCCGTGGTGGGATTGGGAATGTATTCAACAAATTAACAAGCAAAATTGGAGATCCCGTTGACTTTGAACTTCCAGATTGGTTGAGTAAATGGCAACCCACTCCCTATCCCTATACCTCTATAAGGCGAAGTATCCTTCAATAGAAATAGTTATCATGGAATTATAGATGCGTGATATTGATAGTTTGTTTCCTTATTAAATATCTCTTAGTCCTATACATTGTTTGATAAATAATTGATTATGGTGTTCTGTTTGATATGCACCTATTTCTTATCTTTCTGTAGCTTCTTTTGGCCTTTCTCTTTTTCTATTTGTGTCGATATTAACTACTTGAAGATATATACCTCACCAATAAGGGTAAGCGGCGGCTAGAAGATGATGGCATATCTTGTACCTGCAGTTCAACGGCAGAATCTTCGGACGTGTGTGGCATGGATTGCCTTTGTAGGTAAGGAGGACTTAGATTAAAATTCATTACTGTCAGAACTTTGATAGAAACTTATAATATATTTTTTGGAAATTATATCTGTATGACCTGCTGCATAAATTTGTTGATTGGGAGTTTCATGGAGAAGAAGAAACGACAACCATAGCACCTCCATCTCCAACGGAGAAGAATTCTTCATATTTGTGGAGGAACTCATTAACTGTGCCGGCGATGACGAGAAAGTAATTGACGGAGAAGAAGAAGACAAAGAAGATGAATTCACCATTAACATTTCCCTGCAGCTTTTTCCTTTTCTTCTTAGTTTACTTAACTTTTTTTTATACATACAAATCACTCTTTAAAGTTTCCCAAAAATAAATAGGAGATCTGTAACTGTAAAAAATATATTAGAATGCAACAGGTAGGAGTTCGTAAGTACTCCATCTGGTTTATGTCGAGAACCAAGAGCGTAGGTAATGTGCCGAAAAATGATATACAAACCTTATTCCGACGGAGTAGCACCTAAGGCGCAAAAGATATACTTCTTTCAGCATCTTTTCTGATATTTAAACCATCTTTAAAGTCACGGGTTGTTAGTTATTCCACTTTGCTCTTTCCTGCAGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAGGTATGCACATAAACTTTTAACATAGATATTTGGACTGATGTTAGTTATTGCAGTATTTTGACAGCTTGTAGTCATCATTTATGACCTTGTCATTATCAGTCATTTCTTTGTCTTTTGCAAGAGTTTGTAAACAATTCTTCTCTCATGTAAATTTTCATTTTTCTGACAACTGATGCCAAGGAACTTTGATTAGAACCTGATGTTTCTTATTTCCACTTTTAAGAGGTACACTCTCCAACAAATATGTCAAGTTGGTTTGATCATAAGAAAATTTAATTAAATAATTACAGGTTTCTGCGTGAAACATTATGTGTGAGTGAGTCTTCAAGTGTTGATTACTTCAAGGGTTGGCACATTTTTGGCCAGCGAAAACAAAAATTTATAACACATGATGTGCAATTTAAAATAAATGCGCAATTTAAAATATAGACCATTGTCATTTTTGTAGGGTCAAATTGGCTGATTGAGTGAGTGATTTTAGTCTTAAATCAGACATAAGTTAGTTGCCTGTTGAAATGTAATTTAGATACTTAAAAACTGCGCAGAAGCACTTACATTTGCAATTTCTCCCATATAAACTGTGGCGGCAAAATACATTTCAAAACTTTAAGTCGAAGTACTATTTTCTTTTGACTCTTGGGAAGTGAAATTAGACAAAACTTTTGGCACAGCGGTGGTATATATCGTAAAGGATACACCTCACTGTAAGATAGTTTGCAAGAAAGAAAGTTAATGTTATGTACATAGATATTTTTGTCTACTGAAAGTTAATATTATGTACGTAGATATTTTTGTCTACCTGAGGGCAGGGAAAACTTGGGCAACTATGTTTGGTCTTGTTCATAACAGGTCTGGTCTAGTAAGTTTAAAGAACCTTCAAGGATGCTTAATCTTTTTCATAACAAGTCTGGTCTGGTAAGTTTAAAAAACCTTCAAGGATGCCTTTTTATAACCTTTCTTTGTAGTGGGGTTTCGTATCTAGCATAGAAGTTACCTACCTCTTTACGTGTTCTAAAACATCTAGTGTGAAGAAACTCTACTGATCCAATATAGGATCTATTGAAAGCAGTTCTAGGTTTTAATGTCATGTCTTGTCATATGAGGTGTACTAACCTTTGTGGAGCACTGAAGGTAGGATTAGTATAAGTTTCAATAATATTCTTCACTTCTTTGTGGTCTTTATTTCTTCATGGAGTTTGAAAGTTCCCCTTTTGATGGTTGCTATTTTTCTACTCTTTACCTTCCCATCTGCTTACGTTTATCTGCTTGCAGTTTGAAATAAAAGTCATTAACACAACCTGTAGTTAGTTGCTTATAGATCTAGAGATCTGCAGTATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCAAAAATGACCATTCGACACTTTTCAATTGCAAACAAGTACAATCTGCATCAAAAGTGCAGGCTGGTAACATTTTTCATATCTATTTTTGCATTTAATTCAGTTGTGTATCTGGTGAAGAAGTAAAGAAATGTTGGTTATTTTGTATTCTTCTTATTTTCGTTTCTTTTGAAAACCAAGCAATAATCATCTAAAAAACTAAAGTTTTGTTGACTCATAACGTGCAGACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAGGTGAAGTTTTTTAAGTTTCTTGCTTAATATGAACTAATAATTCGTGTTCTGTTCATCCTGAGCTCTTAATTTAGTAAGTTACAACTGCAGTTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAGGTATGTCGGTCTGTACGGGTGCATATTCTTTTTGTTAACATAGGCACTCTTGCATTTTCCATTGGCAAGTAATGGAAAATCAGCAAGTTCTTGTTCTATGAAAAATTTGTGATTGAGTTACCAATTATATTTAATATATATGTTATCTTTATTGTTGTTTTCTATTACTACTATCTTATGGTTTCACTTTCAGTAATCTTGGAGTCTTGTTTTAAAAATAAACAATAATAATAGGATCTTTTAAAAGTTTATAGATTGAGGTTCAAAACTTGTATATTTTGATCCCATGACCGTTTCTGTAGTGTAATTAAGTACACAAAATCTTGAACTAGAATAGTTCTATAGATTGAACTTATGTTTTATGTGCAGAACAGATAATGCATTATAGCTAGAGACAGTTATATAAGTTTTGGCCATGTCTGAGTAAAAGATATTTCCTTTTGGTCACCTAATGCTGTTCTGTCTATTAGGAAAGGGAGAAAGATTGCGAGCTTCCATACATGCTCCAGTTTTTCTCCATTCTAGTCATAAATCATCTGTCTGTGTACATATGCCTGAGAAAGTGCATTTAGAAAGGAATCAAATCACTTAGACATCTAATATATGTAGCCTAAATTTGAGCTTTGGCGGTTGGAGTATAGTATTTTAGCTTCCACTTTCATAATGTTTAGCTTTTTCTTTTAACTTTGAAGTATTTCTTAGTTCTCTAGGAAGTTTATTCAAACCTCAGATTTCAATTTTATATGCTGAGATATTTTCACGAAACCTTCTATTTATTTCTATTCATAGAGTAATTAGAAATTTGTTTCACATGTGGTCTCCATGGTTTCTTTTCACATAGCATCTCTTTTTTAAGTTCTCTTTGTAACTTTTTCTTATCTAATCCTCAGGTTCGTACTAAACATTCTTTGCATTAGGAATTGTCTACTAACTTTATATGCGTGTGGTAACCAAGTATGAAAGTGATGTCAATCTTGTTAACTTAATTTTTAAAGAAATATCTATTAAACGTAGAAGCTAGCAAGTTTCTCTGTTGGATACTCTATTAATTGGCTGGTCGTTCGTTTCTTCTCATTTATTTGTTCATATTTTTACATTCTTCAGTCCTGTTGACTTCCTGGTGAAATTTCTCTCTGGGAACTCTATCCATTTGTTGGACATTTATTATTCGGTTTCTTCTCATGTATTTGTTCATGTTGTTACACTTTTCAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTGGTAAGGAAGTTTTTGAATTGTTTAGTGTGTAACTCGGACACCCATGATTTGGCTGAAGATTTACTCTTGTTCTCATTCCCCACCCGCCCTAACAGATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGGGTATTTTGTTCCAACTTTCTATTGAATTTTGAACCTATTATTTGTTCCTAGTGTAGTTGAAATCCCCAAAAACTATTTTATTGAGCCAAGTGTATCAGAAACAGCCTCCTAGCTCACCAAATTCAGGTCTGCATACACGCAGCCTCCCCAGAACTACTTGTACTTCAGTTGAAATGGATCCATGTACCTAGTTCAGGTTCAAAGGGTGAATTCTAATCTATGTTGCTCAGACTTTCCAAAAATGCTGCCGTAGACGAATCCTCTAAAACTGCACTACTTTTGGAGGATTCGGCACGCACTGGTCAACTTCGTTTTAATGAGTCTGAGCATCAGAGATTTATACACCAGTACAAAATACAGCAAACTTGTAGTAGTACCTTTTATTTCTATTTTGTATAATATTCGTGTGAGATTAGGTTGAATGGAACGATCTCATCAATGAGGATTCATATAGCCCACTCCAACTTGTTTGGGGTCGAGGCATTGTTGTTGTTGCTGTTTTCAATGGAATCTATAACGGAACGAGTACTTTTGCAGGTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGCAAAGTTTCATTTTAACATATTCT</genome_strand>
        <mrna_strand>GCTACAGTAAATGAGTGTTGCTACTTGATTGAGCCCATGCCTGCTACACCTATGAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTACCCGTGGTGGGATTGGGAATGTATTCAACAAATTAACAAGCAAAATTGGAGATCCCGTTGACTTTGAACTTCCAGATTGGTTGAGTAAATGGCAACCCACTCCCTATCCCTATACCTCTATAAGACGAA...............................................................................................................................................................................................................ATATATACCTCACCAATAAGGGTAAGCGGCGGCTAGAAGATGATGGCATATCTTGTACCTGCAGTTCAACAGCAGAATCTTCAGACGTGTGTGGCATGGATTGCCTTTGTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG..........................................................................................TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCACATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAAACTGAAGTTCCCCCAAAAG.........................................................................................GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG...............................................................................................ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTA-CAAATGTGCAAAGTTTCATTTT-ACATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602829" ref_strand="+" ref_description="SGN-U602829 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157343314|emb|CAO67365.1| (e_value=8e-100) unnamed; (*ATH) AT5G21140.1 (e_value=3e-89) | Symbol: EMB1379 | expressed protein | chr5:7187102-7189622 REVERSE | Aliases: EMB1379, EMBRYO DEFECTIVE 1379; (*SWP) sp|Q8WV22|NSE1_HUMAN (e_value=7e-18) Non-structural maintenance of chromosomes element 1 homolog OS=Homo sapiens GN=NSMCE1; ">
      <seq>gcataatttcactttcttcagtgcaaattcgaatttgaatttcaatggcgacactttcatggaggcaccatacactaattcaagctctactctctcgtggtccgcttaaagagaaggattttcaatctatattcaccagaatcatcgacaaatcctcaggtaatcatcagtcactattcaatgaatacctgagaaagataaacggagagctcgcttatgtgcagttagagctacgggcatgtagaaaccagtatgacggacatgtgcattatggtgttgtgaacaatgtttcagatgagtcatccaaacttggtactaaatattcagttccccagatagctttctataaaggcattattgaagcaattgttcaagacgcagcagctcagggatttatatcgaccattgatgcactgaacatacggctcgaaaatcagtttctagctggaacagaatcccagtctcagagaggtcatattcctgcagcgtttagaaatttttcaatgtctcaaaaggagaggacccttgaggaacttgcgagggaccgctggctttctctaacagatggtaagataggactaggagttcgttcgttccttgatctcagaagttggtttcgcagtaatgaggttccagcatgtgaagtttgcaatgaagctgctgtgaaggctgagctttgcaaaaatgaaggctgtaatgttcgtatgcatatgtactgtctgagaatgaagttctccaaaagcaaggctgagaaagtttgtcccggttgtgggacaagatggcattacaacattgcaaaagtagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="11391" stop="15847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11691" g_stop="11849" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11850" i_stop="12634" i_length="785">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12635" g_stop="12831" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="356" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12832" i_stop="14288" i_length="1457">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14289" g_stop="14369" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="437" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14370" i_stop="14495" i_length="126">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14496" g_stop="14726" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="668" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14727" i_stop="14941" i_length="215">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14942" g_stop="15019" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="746" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15020" i_stop="15487" i_length="468">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15488" g_stop="15547" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="806" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-U602829" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11691" e_stop="11849"/>
          <exon e_start="12635" e_stop="12831"/>
          <exon e_start="14289" e_stop="14369"/>
          <exon e_start="14496" e_stop="14726"/>
          <exon e_start="14942" e_stop="15019"/>
          <exon e_start="15488" e_stop="15547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAATTTCACTTTCTTCAGTGCAAATTCGAATTTGAATTTCAATGGCGACACTTTCATGGAGGCACCATACACTAATTCAAGCTCTACTCTCTCGTGGTCCGCTTAAAGAGAAGGATTTTCAATCTATATTCACCAGAATCATCGACAAATCCTCAGGTTTTTGTGGTTTTTTTTGATTTTTTTTTTCGCGTATTAGATTGATTGTTTTTCGGTGTTTTGAGTTTAGTTCCAAGTACCCAAGTGCTAGTTTAGTTTATTCTGATCATTGCATTGGATTTTTTTTAACTTAGTTGTGGAATTTTGGTTTTAGTATTTGTGTTGTTGTTGAGTTTTTGTTTAGATATTTGGGGATTGGGGATTACAGTATCATTTTCAAGGACCATTTACATGTTTAATCATTTTCGTCTTTGTGTTGTTGGATTTTTACTTTGATATGTTTGTTTTCTAGCATAAGATTTAACTATCTCGTGGGCTATTCTCGAAGAAAGGAGGAGGAATTATGGCTTGTTGTTTGTGGAGAAGGGTTGAGCTGAGTAAATCTGGCTTATTATGAAAGAAATTATAACTATGGATTGATTACTGAAAGTTTTAGCTTAATGGATACATATTGTTTGTTCTCGAAAATTCGTTTATTTGTATGTTTTGGTGAATCAATAGGGATAATTGCTCTGTGTTTTGGAGGAAAGGCAAATCCTTTTTGAGCTTTAGTTAGTTTTCCGTTTCCCGTTTGGTTCGTAACTCGTAAGGCAGGAATCAAGTGTTTAATGATTCTGATTTGGAATTTTTGTTCTTTTCTTTGGATACAAGTATCATCATGTGATTGTCTGTTTAGTTTTCTAATTAGCATGTTAAAATTTGACTGGACTAAATAAATAAAATATTGTTTGGTATCTGTGTGAAAACATATTTGTTTCTGAAACTAATTTATGTCTATAATTCAGGTAATCATCAGTCACTATTCAATGAATACCTGAGAAAGATAAACGGAGAGCTCGCTTATGTGCAGTTAGAGCTACGGGCATGTAGAAACCAGTATGACGGACATGTGCATTATGGTGTTGTGAACAATGTTTCAGATGAGTCATCCAAACTTGGTACTAAATATTCAGTTCCCCAGATAGCTTTCTATAAAGGCATTGTGAGTTTTTCCTCCCTTTCTTTTGAACTGTGTCGAGAATGTCCGTAGTTGTTATATAGCCATCCTGTGTCCATATGAGGAAGTATCTTCATATTCTTTTGTCTTGCTTTGTGAGAGGGAATAGGATGTAAAATGAAAATCTTCATTAGTCTATGGAATAGAGAACAAGAACTAATAAGGTTGCATTAAACAGAACTGCTGAATGCTACTTTTCTTTTGCCTCCTTACCTCAACTCAACGATGACATTGCTGCATATCTTAGCTGGCAGTTCCACAGAAAGGAGCAAAAACTGTTTACTCTTCTTCCTTTCCTAGTCTGAGCTTGAAAGAAGATCTACATGCTATTAGTCCTCTAAAACATAAAACTTCATGCTTAATCTTCATAGTAATGAATTGCGTATAAACTTGCAACTTATGTAATGAATTTGATATGGGAATAGAGCAGCTGATGCTGTTCAAGTTATAGTACAAACATGATCATCCATCTTCTAGGATTAGTACTAACAACAACATACCTGGTGTAATCCCACAAGTGGGATCAGGAGAGGATGGTGTGTACACAACCTTACCCCTACCTTGTAGAGGTAGATAGGTTGTTTCCACTAGATCCTCGGCTCAAGTAAAGCATATCAAAATCTAAGTATGAAAAGTAAATATAGTAGTGAATAAGTGCTGAAAATAATGGAGAAAAGAACAGTAGCAACACAAATAATACAATATTTGAAGAAAAGAACACAGGTAATAGAAAGCATAACCACTAAGTTCAGTTAAATTAGAGTATTTTGGAGCTGACTTATGCAATCTAGTTTTATACAAAATAATATTCAGGAGTCCCATTTTAAATCAAAAGTTGAAGTTGGTCGATCTATTTCATATTAGCTCAAAATGTGGTTAGGGGAAAAGATTTGGTAGGCTTTTTTCACTTCTTTCTAATCTTGCTTGCTTTTTTTTTTTTTTTGGGAGAACGAATTGTTTGCTTCCCTTTTGTACTACGAATTTAAACTCACTTACTGTTGTAAAGGGGAGAGTCAAATAATTGAAATTTGTTGGTTTCAGTAATTGATGTTTTCTCTAATCGACTAAGTCTCAGTCCTCAACTAGTTGGGATTTACTATATGAATTTTCCATTCATCTGTGCGTTCTTCTCTATTCAGGCCCATTTCATTCAATTATTGAGTAAATTGCATACTTTGAGGTAACTTGGGGTCTCTACAATTGAAGGTTCTCATAATTCCACTCTTATTCCAACAGTTACATAGAATTTCCTAATGAGAATAAAAAGGATCCTGAAAACGTTGGGCTTAATGTATCTGTACAAAATTACCAAGTTTTACTTATATTATGTCCTTAGCTTAGACTGGTTAGTGTTTCTTAAAGAAAAATAATATGAATATATGAAGATCATTTCCTGACATAAATTTTTTAATGAGATTTATATGGTTACTGTTTAAGTGCAGATTGAAGCAATTGTTCAAGACGCAGCAGCTCAGGGATTTATATCGACCATTGATGCACTGAACATACGGCTCGAAAATCAGGTTTCTTACTTCTTAACGATAAATGGTGGATGTGGTTCTGGATTAAAAAAGATCTGTATAAACTTTGTAAATTTGCTTGTTGTTAGATCAGAGTTGTAATTATAATTACTTTGCTTCGGTCAACAGTTTCTAGCTGGAACAGAATCCCAGTCTCAGAGAGGTCATATTCCTGCAGCGTTTAGAAATTTTTCAATGTCTCAAAAGGAGAGGACCCTTGAGGAACTTGCGAGGGACCGCTGGCTTTCTCTAACAGATGGTAAGATAGGACTAGGAGTTCGTTCGTTCCTTGATCTCAGAAGTTGGTTTCGCAGTAATGAGGTTCCAGCATGTGAAGTTTGCAATGAAGCTGCTGTGAAGGTCTATTCTTCTCTTTAACTCCATGTTCACTATAGTAAGAATTTTGCCTTTAAAATTGGATAACTTTTTAGCTGTAAACTCACATGGTCTTCCTATATACTGTGCTTTGGTTTGATAATGTCACTGCAAACATCAGAAAGATGTTTATGTGTCTATGATAAACTATATGGCTGCTAAGTCATCCTATACTCATGGTGGTATGATTATTTGACCAGGCTGAGCTTTGCAAAAATGAAGGCTGTAATGTTCGTATGCATATGTACTGTCTGAGAATGAAGTTCTCCAAAAGCAAGGTATTCTTCTCTCCTAGTGTAACTTTCCATAAATTTCCCATTTGTCACTCAATGACTGAATCTTGCCCTTTTCTTTTTAGCATCAACGAATTTAATTATATATATGTTTTCCAATCTTTTGATGTTGAATCCTCTACCATAATAGTTGCATTCGTATTAGTGTCCATGATACTTGTTTAATCCTAGACTTATAAACAGAAGAATGTGAACCCCCTCTTAGTCACAAGAGATGAGATTATTCTGGATTTGCACATTATAGATGTTATTAACTAAATTTGCCCGACGTATAGGCAATCAAGAAAGCCGTATAATTGAACATATATATAAGCTAGATAAAAGTGAGCTAATCCAACTATCCAACCAATCATGTTATATTTCAAAGGGAAAACACTGTAAAGTTGATGATGAACACTCTCATCTATGCAGGCGATTGATGAACTAAATTCTTGTTGAAACCATAATTTGCAGGCTGAGAAAGTTTGTCCCGGTTGTGGGACAAGATGGCATTACAACATTGCAAAAGTAGAA</genome_strand>
        <mrna_strand>GCATAATTTCACTTTCTTCAGTGCAAATTCGAATTTGAATTTCAATGGCGACACTTTCATGGAGGCACCATACACTAATTCAAGCTCTACTCTCTCGTGGTCCGCTTAAAGAGAAGGATTTTCAATCTATATTCACCAGAATCATCGACAAATCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCATCAGTCACTATTCAATGAATACCTGAGAAAGATAAACGGAGAGCTCGCTTATGTGCAGTTAGAGCTACGGGCATGTAGAAACCAGTATGACGGACATGTGCATTATGGTGTTGTGAACAATGTTTCAGATGAGTCATCCAAACTTGGTACTAAATATTCAGTTCCCCAGATAGCTTTCTATAAAGGCATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGCAATTGTTCAAGACGCAGCAGCTCAGGGATTTATATCGACCATTGATGCACTGAACATACGGCTCGAAAATCAG..............................................................................................................................TTTCTAGCTGGAACAGAATCCCAGTCTCAGAGAGGTCATATTCCTGCAGCGTTTAGAAATTTTTCAATGTCTCAAAAGGAGAGGACCCTTGAGGAACTTGCGAGGGACCGCTGGCTTTCTCTAACAGATGGTAAGATAGGACTAGGAGTTCGTTCGTTCCTTGATCTCAGAAGTTGGTTTCGCAGTAATGAGGTTCCAGCATGTGAAGTTTGCAATGAAGCTGCTGTGAAG.......................................................................................................................................................................................................................GCTGAGCTTTGCAAAAATGAAGGCTGTAATGTTCGTATGCATATGTACTGTCTGAGAATGAAGTTCTCCAAAAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGTTTGTCCCGGTTGTGGGACAAGATGGCATTACAACATTGCAAAAGTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583301" ref_strand="+" ref_description="SGN-U583301 Tomato 200607#2 [8 ESTs aligned] ">
      <seq>ggcgattggcggccaatcggccgaattgagtagtgaggtggcgactgttaccgccgccggctgcggcatctctgccacccaattccgccgtcatcgacgtttgtgccacggcggtggtttcatctatagctttgtacactgaaaaattactgattttgaattttcgatgatacccagatggaagaaacatagcaaagaatggtttttgtggatcagatctgtattcatcaaatgatggtattttccatgttaagaatctcgaagccaatcgattgaagactagtgctcgaaaaagttatgacgttgctggatggaatcagaagataaaaacttattgttcgtttgaaggaaatggcactatgcctctccctaaaatgtttaatagattgtacgaccagggcatgtggaagacgagctgctttcttatatcacaatgatcagtcttcggaaattgatgatatagtggtttggaagacgaggcaaaaaaagcttacgaagcaacctagttgaatgttcaaatcaattgaccactttgatttggtaatacaactatagccaagacaatgcttcattataagtgcataacttttcactttattgtttgagcattgtgttgatttctctaaacttgtttttcgttgaacaagattgttttttcatatactcatggaaagcaacaccgtgctcagaagttagagtgaaatgttatgcatttgtgattatatattttcttggctagagttgtattgccaagtgaagtgttttaattgatttgaaccttcgagtgagttgcttcgtgatcttcttatgccttagcttcagaacttaccactatatcatcaattctcgaagagtgtggcctacctgaatgctctcactaaactattcagactgttgtaaatctctactgttgaggctttatttttggcagttcttaaatgtgtatcttaagttttgtaattaatttatgtttgtttagtatatctctgttgttacccctttgtaatcttttggattcaatgantgaagttggtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="19853" stop="16436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19549" g_stop="19342" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="237" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19341" i_stop="17537" i_length="1805">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17536" g_stop="16736" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="1039" r_length="802" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-U583301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1009</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19549" e_stop="19342"/>
          <exon e_start="17536" e_stop="16736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTGAGGTGGCGACTGTTACCGCCGCCGGCTGCGGCATCTCTGCCACCCAATTCCGCCGTCATCGACGTTTGTGCCACGGCGGTGGTTTCATCTATAGCTTTGTACACTGAAAAATTACTGATTTTGAATTTTCGATGATACCCAGATGGAAGAAACATAGCAAAGAATGGTTTTTGTGGATCAGATCTGTATTCATCAAATGATGGTATGAGCTCTTTACAAAGTTTTACTAGTTGTCGTGTTTTTTTTTACTGTCGTTTTGATTGATTTGATGTGATTGAGCTTAGCTTGGAGTGTCGTTTTTTCTTTTCATAACTATTTGATTTGATTGATTTGGTGTACTTGAGCTTAGTTTAGAGATACGTGTAAGATTTGCGTATATTTTATACACAAACTATTTGATTTGGTGTACTTGAGCTTGGAGGTTCGTGTAAGATTTGCGTATACTTTCTACGCATTGGACCCGTTGTGTGATTCTATTGGATATGTTGTTGTTGTTGTTGTTAATTAGGGATTTTTTAGTTTGTGCATTTTGTACTATGATTTTTTGTTTTTTTAGTTGGTTCTGAATAAATTATTTATATATACTGAATGAATTTTTTTCGACACTAATATGGAATTTGAACTAAAAGTATACTAGGTTTTGATATTCTTATTAGCTGATGTGTGGGTAAGGTTTGCGTTAACTCTATACAGACCCCATTTGTGCGAGTTCATTGGATATGTTGTTGTTGCGTGGACTCTATGCTCATCGGACCCCATTTGTGTGAGTTCATTGGGTATGTTGTTGTTACACGAGGCAGAATCAGAACTCATTTAAGCATGGTTCATAGTGTTTGAAACATTATGGAGATGTTTAATTATCTTGAGATATGCTTTGGTTGTTTGTGCAAAACTTTGAAGTTTCGTCAAATTACATGAACTTTGTTTTGTGTCTCACACAACTGATGTAAGTTGTGTGAGGTCTCTTTTTGTTTTACAAGTCAGTGCGACCCAAATCGTTGGACTCACCAACTCGTGAAATAAAAAGAAGTCTCACGCAACTTGCGTTAATTCTGTGAGTCGCAAAGTAAATTTTCAAATCCTCTCTTCATATATTTCTTGCACATTCCAACTATTCTACTTATAAGATCATAAGAAACTGAGACTTCCAAAATATGTGTTCTTAACACTAATTTGAGTCCCTTTTCTAATTTAAAAAAAGGGCAAATAGCAATTTTGGCCTCAATGTTGTAGGTTTATTTCAATTTGGTCCTTGTTTAATTTAACTAAGCATAATTAATTGTCAATTAATATGAAATGCTTAGTTGAATTATATAAGGGCCAAAATCGGAATAAACATATAATATAAGGACTAAAACTGCTATTTGCCCATTTAAAAAAGACCAACAAGTCTTTTTCAATTTAAGGACCCTAAAAACTACACTATTTCTGGTTCAATTTGTTTGCCCTACTTTACTTTTAAAGTAAAGTAAAGTGAGACGAACAAATTGAATCAGAGAGAGTATAGTTTTTAGTTCGGTTCAAAAAAAGTATCTCCTTCCTTTTTGACAACTATTATGTTCCAACTTTCCACGTGACATGTTTAAAACCACACAATTAAAGGGTATTTTTGGCATTTGATGTATCTCTATCTGATGACCATAAGTTTCTGAAGTCATCTTTACTTAACTCTATCTCAAGTTAAAATAGGTCAAACAAATTGAAATAGAGTGAGTATTATATATTAAGAAAAAGCAATGGTATGGTTTATAAGGAACCGGTAAGGCGATAACAACCATTATATAAGCTTAATAGACTAAAATTGTTGTTATTAATTTAATCATTATGTTATGTTCTCCAAAGTTTATGAATAATTTCTGAATTGGTACTTGACTAGATGTCATTGATCTCTGTTTGCAGTGCTTTACTTGCCTTACATGTTACTTTCCATACTACAAAACTAGATTGAAGAAGAATAAGATGTTATAGTGGAGTGGAGCTTTTGATTTATTTGAATATATTTAGTAGGTATTTTCCATGTTAAGAATCTCGAAGCCAATCGATTGAAGACTAGTGCTCGAAAAAGTTATGACGTTGCTGGATGGAATCAGAAGATAAAAACTTATTGTTCGTTTGAAGGAAATGGCACTATGCCTCTCCCTAAAATGTTTAATAGATTGTACGACCAGGGCATGTGGAAGACGAGCTGCTTTCTTATATCACAATGATCAGTCTTCGGAAATTGATGATATAGTGGTTTGGAAGACGAGGCAAAAAAAGCTTACGAAGCAACCTAGTTGAATGTTCAAATCAATTGACCACTTTGATTTGGTAATACAACTATAGCCAAGACAATGCTTCATTATAAGTGCATAACTTTTCACTTTATTGTTTGAGCATTGTGTTGATTTCTCTAAACTTGTTTTTCGTTGAACAAGATTGTTTTTTCATATACTCATGGAAAGCAACACCGTGCTCAGAAGTTAGAGTGAAATGTTATGCATTTGTGATTATATATTTTCTTGGCTAGAGTTGTATTGCCAAGTGAAGTGTTTTAATTGATTTGAACCTTCGAGTGAGTTGCTTCGTGATCTTCTTATGCCTTAGCTTCAGAACTTACCACTATATCATCAATTCTCGAAGAGTGTGGCCTACCTGAATGCTCTCACTAAACTATTCAGACTGTTGTAAATCTCTACTGTTGAGGCTTTATTTTTGGCAGTTCTTAAATGTGTATCTTAAGTTTTGTAATTAATTTATGTTTGTTTAGTATATCTCTGTTGTTACCCCTTTGTAATCTTTTGGATTCAATGA-TGAAGTTGGTTTGGA</genome_strand>
        <mrna_strand>GTAGTGAGGTGGCGACTGTTACCGCCGCCGGCTGCGGCATCTCTGCCACCCAATTCCGCCGTCATCGACGTTTGTGCCACGGCGGTGGTTTCATCTATAGCTTTGTACACTGAAAAATTACTGATTTTGAATTTTCGATGATACCCAGATGGAAGAAACATAGCAAAGAATGGTTTTTGTGGATCAGATCTGTATTCATCAAATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTCCATGTTAAGAATCTCGAAGCCAATCGATTGAAGACTAGTGCTCGAAAAAGTTATGACGTTGCTGGATGGAATCAGAAGATAAAAACTTATTGTTCGTTTGAAGGAAATGGCACTATGCCTCTCCCTAAAATGTTTAATAGATTGTACGACCAGGGCATGTGGAAGACGAGCTGCTTTCTTATATCACAATGATCAGTCTTCGGAAATTGATGATATAGTGGTTTGGAAGACGAGGCAAAAAAAGCTTACGAAGCAACCTAGTTGAATGTTCAAATCAATTGACCACTTTGATTTGGTAATACAACTATAGCCAAGACAATGCTTCATTATAAGTGCATAACTTTTCACTTTATTGTTTGAGCATTGTGTTGATTTCTCTAAACTTGTTTTTCGTTGAACAAGATTGTTTTTTCATATACTCATGGAAAGCAACACCGTGCTCAGAAGTTAGAGTGAAATGTTATGCATTTGTGATTATATATTTTCTTGGCTAGAGTTGTATTGCCAAGTGAAGTGTTTTAATTGATTTGAACCTTCGAGTGAGTTGCTTCGTGATCTTCTTATGCCTTAGCTTCAGAACTTACCACTATATCATCAATTCTCGAAGAGTGTGGCCTACCTGAATGCTCTCACTAAACTATTCAGACTGTTGTAAATCTCTACTGTTGAGGCTTTATTTTTGGCAGTTCTTAAATGTGTATCTTAAGTTTTGTAATTAATTTATGTTTGTTTAGTATATCTCTGTTGTTACCCCTTTGTAATCTTTTGGATTCAATGANTGAAGTTGGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577601" ref_strand="+" ref_description="SGN-U577601 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157337670|emb|CAO22016.1| (e_value=1e-44) unnamed; (*ATH) AT3G58040.1 (e_value=8e-38) | Symbol: None | seven in absentia (SINA) family protein, similar to siah-1A protein (Mus musculus) GI:297035; contains Pfam profile PF03145: Seven in absentia protein family | chr3:21499493-21502465 FORWARD | Aliases: T10K17.250; (*SWP) sp|Q9M2P4|SINA2_ARATH (e_value=8e-37) E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2; ">
      <seq>gatcctctaagacagaatttccacaaaaaatggtgtgttgtacaaaattcacaatagcctttcaaaaaaatccaatcttttttagtatatttttttcaatttttttctatttgtacacaaacatgtgtatgtgtcacaaaaatcagtaagctataaggggggttgtatcaattataagtttaaattattatgaaattatgaggatttacatgatttgattgtgacccttttcaaatctttgactcttgttaccctttagatttgtatacttgtaaagagaaacaaacaaatggttttgttttctcagatttactgttgaaaaaacaagagcctgttttggtggacacgaaaatcaaggagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttgttaagaccctttcattttctgttcttggtttttgtctttgttttccttttttttgttgttgatgaagcctatcaggaagacccaattattggttgcttttgttgagaatgggatgagttaatctggcttttacgtacaaaatcttatcttggatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgatnccaaatttatggctgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22217" stop="28756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22516" g_stop="23078" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23079" i_stop="26605" i_length="3527">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26606" g_stop="26908" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="866" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28302" g_stop="28456" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="1021" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-U577601" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1021</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22516" e_stop="23078"/>
          <exon e_start="26606" e_stop="26908"/>
          <exon e_start="28302" e_stop="28456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTCTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCA</genome_strand>
        <mrna_strand>GATCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATNCCAAATTTATGGCTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590144" ref_strand="+" ref_description="SGN-U590144 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157337670|emb|CAO22016.1| (e_value=9e-18) unnamed; (*ATH) AT3G58040.1 (e_value=2e-13) | Symbol: None | seven in absentia (SINA) family protein, similar to siah-1A protein (Mus musculus) GI:297035; contains Pfam profile PF03145: Seven in absentia protein family | chr3:21499493-21502465 FORWARD | Aliases: T10K17.250; (*SWP) sp|Q9M2P4|SINA2_ARATH (e_value=2e-12) E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2; ">
      <seq>tgtacaaaattcacaatagcctttcaaaaaaatccaatcttttttagtatatttttttcaatttttttctatttgtacacaaacatgtgtatgtgtcacaaaaatcagtaagctataaggggggttgtatcaattataagtttaaattattatgaaattatgaggatttacatgatttgattgtgacccttttcaaatctttgactcttgttaccctttagatttgtatacttgtaaagagaaacaaacaaatggttttgttttctcagatttactgttgaaaaaacaagagcctgttttggtggacacgaaaatcaaggagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttggatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22254" stop="27208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22554" g_stop="22926" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22927" i_stop="26605" i_length="3679">
            <donor d_prob="0.605" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26606" g_stop="26908" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="677" r_length="304" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-U590144" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22554" e_stop="22926"/>
          <exon e_start="26606" e_stop="26908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAG-GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG</genome_strand>
        <mrna_strand>TGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577526" ref_strand="+" ref_description="SGN-U577526 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157337670|emb|CAO22016.1| (e_value=2e-145) unnamed; (*ATH) AT3G58040.1 (e_value=1e-136) | Symbol: None | seven in absentia (SINA) family protein, similar to siah-1A protein (Mus musculus) GI:297035; contains Pfam profile PF03145: Seven in absentia protein family | chr3:21499493-21502465 FORWARD | Aliases: T10K17.250; (*SWP) sp|Q9M2P4|SINA2_ARATH (e_value=1e-135) E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2; ">
      <seq>agaactagtctcgagtttttttttttcctgttttgatgaacacgaaaagcaagaacaaagcattgaaggatatttgttgagaatgggatgagttaatctggcttttaggatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgatggctgtaccttcaatcatcgttatgtcaaatctaatcctcaagaagttgagaatgctacatggatgttgacggtttttaactgtttcggtcaccagttctgcctgcactttgaggctttcaatcttggattggcaccggtatacatggcattccttcgttttatgggtgatgatgatgatgcgaaaagatttagctatagtcttgaagtaggtggatttggcagaaagttaacatggcagggagtaccgaggagcatccgtgatagtcataaaactgtccgagacagtttagacgggctgattattcaaaggagcatggcactcttcttctctggtggtgacaggaaggagctgaagctaaaggtagctgggcgtatttggcgagagccattgtaaactagatatatgcatcttccttcatcgtggggatgccctgaaagtatagttagttatcgctaaattggttggtggcttaattttttgtaaatggttctatacagtttctggtttttcggatcgatcgtatcgattgtagtttagctcaactgtggatcatgtatctaaagttgtgaggcattttaagcttttctatgaccagccatatgataatctatctggttattagtctctttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22722" stop="30635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22846" g_stop="22895" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="76" r_length="50" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22896" i_stop="23028" i_length="133">
            <donor d_prob="0.449" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23029" g_stop="23060" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="108" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23061" i_stop="26605" i_length="3545">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26606" g_stop="26908" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="411" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28302" g_stop="28685" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="795" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28686" i_stop="29771" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29772" g_stop="30335" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="1359" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="26" polyA_stop="15"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-U577526" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1333</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22846" e_stop="22895"/>
          <exon e_start="23029" e_stop="23060"/>
          <exon e_start="26606" e_stop="26908"/>
          <exon e_start="28302" e_stop="28685"/>
          <exon e_start="29772" e_stop="30335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTCTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACGGTTAGTCCTCTATCTTTCTTTCTCTCTTTTTTCTTTTTTCCTTTGTTGTGAAGGAGAGCCTTGGTGTAACTGGTTAAGTTGCCGCCATGTGACCAGGAGGTCACGTGTTTGAGCCATGGAAATAGCCTCTTGCAGCAATGCAGGGTAAGACTGTATAACCTCTCCTATCTCTACGAGGTAGGAGTAAGGTTTGTATACACTCTACCCTCCCTAGATCCCACTTTTAGGCTAACACCTGCCACCGGGTATGTTATTGTAATTTTACAGCTTTCCTGCACAAGTAAAAGAAGCACAAACGTCCAGTGTTTTGTGCTTCTTTATCAACAACTTAAAGGCAAAATCCCAATGAGATTCACATACCCTTTTAAGTCAACATTGAAAGAAAATCTTTTGAAAATTCTGATGCTGTCTTCTGTGGAAGGAGAGAAATTGATGGCTGTTTCTGTTAATTTGTTCTCTTAAAGTTAGATCTTGAACTCCTATTCAATACTTTGAGGAAAAATCTGTTACTATTTACCTTATCAAAAAAAGAAGAACCACTATTATGTACTCCTTCGTTACAATTTGTTTTACTTTCCTTTTAGTTTGTTTATAAAAGAATGCCTCTTCCCCTTTTTGGCAAAGTGCAAACTCTTTAATTCCAACTCTTCATATGACATGTTTAATGCCATAAGATTGAAGTACATTTTGATACATTTTACATATTTTGAGTTTAAGATGACAAGATTCAAAAAATTTCTCTACTTTCTTAAACTCCGAGACACATCAAAACCAGGCAAATAATTGAAACGGAGCAGTTTTCTTCATCCAATTGTAGAAGTGTTGTATAACATTTTGTTATTCATCATCGTCTTTGTACTTTAGCTATTGTTAGGAGGTTCATACTTCTATTGCCAGCTTTATCTTTTTTGGTTGAAAGTGAAGGCAGACAAGAGCATGCATAATTTTGTTATTCGCCTACCAATTAATTTTCCATCTAGCATTTAGCCATACGATAACCGAGCCTTTTTCTTTGTGGATTTTCACATTGTTCCATCTGCAATGATGTGCTGTTGGTAATAGTTTGTTTGCTGATTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCTGT</genome_strand>
        <mrna_strand>CCTGTTTTGATGAACACGAAAAGCAAGAACAAAGCATTGAAGGATATTTG.....................................................................................................................................TTGAGAATGGGATGAGTTAATCTGGCTTTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590991" ref_strand="+" ref_description="SGN-U590991 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|78191426|gb|ABB29934.1| (e_value=3e-26) acidic ribosomal protein P1a-like [Solanum tuberosum]; (*ATH) AT5G47700.1 (e_value=3e-20) | Symbol: None | 60S acidic ribosomal protein P1 (RPP1C) | chr5:19345029-19346209 REVERSE | Aliases: MCA23.2, MCA23_2; (*SWP) sp|Q8LEQ0|RLA13_ARATH (e_value=3e-19) 60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C; ">
      <seq>tcgaactcgccgtacactcttttccgtcttctctaaggttagcagatcaataggtcgcgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaattttaactttagctaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggagcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40978" stop="42737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41278" g_stop="41314" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="120" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42437" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="247" r_length="127" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-U590991" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41278" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTG</genome_strand>
        <mrna_strand>TCGAACTCGCCGTACACTCTTTTCCGTCTTCTCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCAGATCAATAGGTCGCGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTTAACTTTAGCTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGAGCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585178" ref_strand="+" ref_description="SGN-U585178 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|115451677|ref|NP_001049439.1| (e_value=7e-53) Os03g0226400; (*ATH) AT3G58060.1 (e_value=6e-47) | Symbol: None | cation efflux family protein / metal tolerance protein, putative (MTPc3), member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID:11500563 | chr3:21508755-21510653 REVERSE | Aliases: T10K17.270; (*SWP) sp|Q9M2P2|MTPC3_ARATH (e_value=8e-39) Putative metal tolerance protein C3 OS=Arabidopsis thaliana GN=MTPC3; ">
      <seq>gaaaaaaaaattatggagggagaagaaatcaagaatgaagtgaaaactccattgttggatgggtggaagcttagttatagggggcggcgaaactcagttacaactttaaggggtgattttttagcaaaattgcctgaaaaagtgaagtcttgtgttaatgttgatgttgaatcttcatcatcaaacattgataataccaagagttctagcttgtctaaaggagaaaaggattactatgaaaaacagtttgagaccttgaagtcatttgaagaagttgattccattgtggcatctagtttcattgatgatgaggatcttgacgaacaatctcaagatgagaaggcaatgcaaatctccaattatgcaaacgttttattactagctcttaaaatctatgccacagtgacaagtggttccctagctatcgctgcatctacgttggattcgttacttgatctcatggctgggggaatactctggctcagtcatctgtcaatgaaaaatatcaacatctacaaatatcctatagggaagttgcgagttcagccagtagggatcattatctttgctgctgttatggctacacttggctttcaggtgtttatccaggctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="47164" stop="51216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47464" g_stop="47683" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47684" i_stop="49999" i_length="2316">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50000" g_stop="50169" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="390" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50170" i_stop="50598" i_length="429">
            <donor d_prob="0.837" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50599" g_stop="50797" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="589" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50798" i_stop="50891" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50892" g_stop="50916" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="614" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-U585178" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47464" e_stop="47683"/>
          <exon e_start="50000" e_stop="50169"/>
          <exon e_start="50599" e_stop="50797"/>
          <exon e_start="50892" e_stop="50916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAAAAATATGGAGGGAGAAGAAATCAAGAATGAAGTGAAAACTCCATTGTTGGATGGGTGGAAGCTTAGTTATAGTGGGCGGCGAAACTCAGTTACAACTTTAAGGGGTGATTTTTTAGCAAGATTGCCTGAAAAAGTGAAGTCTTGTGTTAATGTTGATGTTGAATCTTCATCATCAAACATTGATAATACCAAGAGTTCTAGCTTGTCTAAAGGTAACCCCACCCCACCCCACCCACCCCTCAAAGAAAAGGAGAAAAGGGGTTCTTGTTTTCTAATTTTTTGGTGCATTTTTGTTTTCAAGATTCAGTTTTTGCTAACTTATGTGTTGTTTGATGGTTTTTGTTTTGCAAGATTCAATTTTTACTAACTTATGGAGTTGATCGATGCTGTTTGGTTCTCAAGATTCAGTTTTTTGCTGATTTATGTAGTTTTTTTATGCTTTTTTGCTTTTCAGGATTCAGCTGTTACTAACTTGAGGAGTTGTTTGGTGCTTTTTGCTTTTCAAGATTCAATTTTTTGCTGACTTATTTATTTGTTTGATGCTTTTTTTTCTTCTCAGGATTCAGCTGTTACTAACTTGAGGAGTTGTTTGGTGCTTTTTTGCTTTTCAATTTTTTGCTAACTTGTGTAGTTATTTGATGCTTTTTATTTTTCAAGATTCAATTTTTACTAACCTAAGAAGTGAAAGTGATCCTTGTGAAGCACATTTAACCTTCGATTGATTGACATGTGTTTTTAGTTCTACATTATGTAGGAAGTAATGTTACTTTTGGATAAAAAAATTAAGGTCTCTTTGTTCTAATTTGTTTGGTGCTTTTTGCTTTTCAAGATTCAACTTTTACTAACTTAATGGAGTTGTTTGATGCTTTTTGCTTTTCAAGATTCAATTTTTTGCTGACATGTGTAATTGTTTGATGCTTTTTGCTTTTCAGGATTCAATTTTTTGTTAAGTTAAGGATTTGTTTGGTGGTTTTTGCTTTTTCAAGATTCAATTGTTTAGTGACTTAAGTAGTGATGGTGATAGTGATCATTGTGGTATCCTTTGATTGATTGGCATGTGTTTTTAGTTCTACATTATGTAGAAAGTAATGTTACATTTGGAAGGAAAAGAAAAGGTCTTTCTGTTCTATTTTGGCATAAACGGGATTTCTCAATGATGCCATGCTTTTTGCTTTTCAATTGTTTACTAATCAAGTAGTGATAGTGAAACTGCTCCTTGTGATATCTGACGAAGCATTTTAATCTTTGATTGTTTGATATGTGTATTTAGGCCTACATTATATAGGAAGTAATGTTACATTTGGAAGAAAAGAAAGGTCTTCCTGTTCTATTTTGCTTGGGGCTTTTTGCTAACTTAAAGGAGTTGTTTGGCGCTTTTTAAGATTCAATTATTTACTAACTTAAGTAGTGAACATGATCCTTGTGATATCCGACAAAGCACATTTAACCTTTGACTAATTGGCATGTGTTTTTAGTTCTACATTATGTAGGAAGTAATGTTACATTTGGAAGTGAAAAAAGGTCTTTCCGTTCTAATTTGTTTGGTGCTTTTTGTTTTTCAAGATTCAGATTTTACTAACTTACGGAGTTGTTTGGTGTTTTTTGCTTTTCAAGATTCAATTTTTCCTAACTTAAGGAGTTAAAATGAATAGACACTTCCATTTTTGAGATAATAATAGTTTTGTTCTCGTGGTTATTGTAAATTCCAATTTGATCCTTGTAATATCCGACGAGGCACGTGTAACTTTTGATTGATTGAAATATGTGTTTTTCATTCTTTTTATGTAGGAAGTTAGGTTAGATTTGGGAAACGAATATCCTTCCGTTCTAATTTGTTTGGTGAATTATGCTTTTCAAGATTGAATTTACTATCTTAAGGAGTTTAAATGAACTAGATAATATCATTGCTGGTCCCTCAATTATTAATAAATTATAATTTTGATCCTTGTGATATCCGACGAAGCACAATTTTTACGTTCAATTGATTGAAATATTTGCTTTTAGTCCTTTTATATAGGAATTGAAATATTTGTTTGATGCTTTTCGCTTTTCAAGATTCAATTTTTCAACTTCTAGAGTTAAACTGAACTAGATTATTTCATTTTTGGAAGTAAATTTAGATTCTTTTGGTGTGACGATGATGCGATTTGAGCTTAAATGGAATAATGAGGATTCATATACACAATCCAAACTTACTTGGGAGTGTAGTTGTTTAATTTAGATATTAAAAAGTTAAAGGAAAAAAATTGTAAGTTGCAATTGTCCTTGTATCAAAGTTGTGAAAGAATACAATTGTAGAATGTTACATATATAGGGTCTGAACAACCTTAAGTTATTATATACATCAATAAATGAGTTCATAGTCAAATACTTATAGATAGTGAATTTTTTAATACATATATAGGGTCTGAACAAAAGTTATTGGGTTCACGTGACCAAGCTAGTAGTAACCTTAAACCTCAGTTTCGATTTCTTTGTTGTGTTATTCATTACCTTTTTTTCATTATTGAGGTTTTTTTGCACCACAGGAGAAAAGGATTACTATGAAAAACAGTTTGAGACCTTGAAGTCATTTGAAGAAGTTGATTCCATTGTGGCATCTAGTTTCATTGATGATGAGGATCTTGACGAACAATCTCAAGATGAGAAGGCAATGCAGATCTCCAATTATGCAAACGTTTTATTACTAGCTCTTAAGGTAAAAACGGTTACATGCTCCGTTGAACTCATGATCCGAGAATGAGAAAACTCTAGACTTGCATATCTGACCTCTCGTATCTTATATATGAATCGACTGTTTTCTTTTGTGGTTGCATATGCTTCTGTCATTACAAATTGACAGTCGGTGAATCTAGGATAGTCTGAGTATATAATTTCAGTAATGTATCTCAAATTTTTAGTCGATAAAGTATGTTGTTGATCATATAAGAAAGCCATGCACTTATGAAATTAGAGCGAATGCATTTCTTCGGTGAAAACATTAGGTGATGCCTTCCATCTGTCCAAGTTTTGGTGGACAGAGTTATCCAGTACTGTAGCAAGTATCCTGTGGAATTAATCGAGATGTGCACGAGTGGCGTTTTATGCGTTCTTCTAAAATAGTAGTAACTATATTTTCATCTTGCAGATCTATGCCACAGTGACAAGTGGTTCCCTAGCTATCGCTGCATCTACGTTGGATTCGTTACTTGATCTCATGGCTGGTGGTATACTCTGGCTCAGTCATCTGTCAATGAAAAATATCAACATCTACAAATATCCTATAGGGAAGTTGCGAGTTCAGCCAGTAGGGATCATTATCTTTGCTGCTGTTATGGCTACACTTGGTACGTGATCGATCTCCTTTGACACGTCAACCATTTCATCCTATTTTCGTCATAATCTATCGAGTCGTTATGGCTCACATTTCTTCCTTTTTAGGCTTTCAGGTGTTTATCCAGGCTGT</genome_strand>
        <mrna_strand>GAAAAAAAAATTATGGAGGGAGAAGAAATCAAGAATGAAGTGAAAACTCCATTGTTGGATGGGTGGAAGCTTAGTTATAGGGGGCGGCGAAACTCAGTTACAACTTTAAGGGGTGATTTTTTAGCAAAATTGCCTGAAAAAGTGAAGTCTTGTGTTAATGTTGATGTTGAATCTTCATCATCAAACATTGATAATACCAAGAGTTCTAGCTTGTCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAGGATTACTATGAAAAACAGTTTGAGACCTTGAAGTCATTTGAAGAAGTTGATTCCATTGTGGCATCTAGTTTCATTGATGATGAGGATCTTGACGAACAATCTCAAGATGAGAAGGCAATGCAAATCTCCAATTATGCAAACGTTTTATTACTAGCTCTTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATGCCACAGTGACAAGTGGTTCCCTAGCTATCGCTGCATCTACGTTGGATTCGTTACTTGATCTCATGGCTGGGGGAATACTCTGGCTCAGTCATCTGTCAATGAAAAATATCAACATCTACAAATATCCTATAGGGAAGTTGCGAGTTCAGCCAGTAGGGATCATTATCTTTGCTGCTGTTATGGCTACACTTG..............................................................................................GCTTTCAGGTGTTTATCCAGGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586269" ref_strand="-" ref_description="SGN-U586269 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157360877|emb|CAO70694.1| (e_value=4e-45) unnamed; (*ATH) AT2G31270.1 (e_value=2e-42) | Symbol: CDT1A | Encodes a cyclin-dependent protein kinase. Involved in nuclear DNA replication and plastid division. Located in nucleus and chloroplast. | chr2:13336092-13338907 FORWARD | Aliases: F16D14.11, F16D14_11, ATCDT1A, CDT1A; ">
      <seq>gatggagttcaccggatcttcaccgtccatcggaaatcattaccggcgaatccatttcgcagtgaaaaatctgccggagttgtagcaattccggtgatggatcaatggagaactaaaacaccggagaaaccgatccaaaatcgcatggcgcgatcactgcagtccctgaaagacgtcagagaagcttctcagaagctccggaaacacgatctgatccaacgcgaggtttctgatccgttattaagctacggtgaagtgaaatctccattggtagctggatcgccggtttctgaacggaagaagcatgtgaactcggtaaagctgccggaaaagtatgaaatgttggaaaaattcttcaatagcatggatagttcaattcggctgctacatttgaagggatctgcaacaactttcactaatattagtgcgaaagtagagagtttgatcgataagaggtttacttgcagtcatttagctcagctgaagtttattttacctgaagccattgagataaagaagattctcaagcacgatgagcgcagttggtgcatgaagccggatctttatatcactttaaatgcaaatgcagttgataatagtgagaagtggaaatctaacagtagcagtgttctattgaggaaatattccgctctcggctcttggatttcttcaagtcacaccctgagggtgatgacanttcctgagggatgctgccaggcccattcactcagtctaagcaagtagtgacccactcatgtagaccttctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="55416" stop="58378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55715" g_stop="56047" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56048" i_stop="56736" i_length="689">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56737" g_stop="56856" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="452" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56857" i_stop="56950" i_length="94">
            <donor d_prob="0.571" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56951" g_stop="57185" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="686" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57186" i_stop="57993" i_length="808">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57994" g_stop="58078" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="771" r_length="85" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-U586269" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586269" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55715" e_stop="56047"/>
          <exon e_start="56737" e_stop="56856"/>
          <exon e_start="56951" e_stop="57185"/>
          <exon e_start="57994" e_stop="58078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAGTTCACCGGATCTTCACCGTCCGATCGGAAATCATTACCGGCGAATCCATTTCGCAGTGAAAAATCTGCCGGAGTTGTAGCAATTCCGGTGATGGATCAATGGAGAACTAAAACACCGGAGAAACCGATCCAAAATCGCATGGCGCGATCACTGCAGTCCCTGAAAGACGTCAGAGAAGCTTCTCAGAAGCTCCGGAAACACGATCTGATCCAACGCGAGGTTTCTGATCCGTTATTAAGCTACGGTGAAGTGAAATCTCCATTGGTAGCTGGATCGCCGGTTTCTGAACGGAAGAAGCATGTGAACTCGGTAAAGCTGCCGGAAAAGTGAGTGTTTCCTGTACTTTCCGTTTTGATGATTTATTCACTTTGTGTCTCTTTGACCAGATACTTACTTGAATATTCTTCAATAAGTTCATCGCAATTGTTTATTTATTTATGCTTTTGATATGAAGTGAAACTTAATTTAAATAAATTTTCTTCAATATGTTCATCACAATTGTTTATTTATTTATTTTGCTTTTGATGCGAAGAAAACTTAGTTGAATAAGTTTTATCCTTTGAAGAAATAATAAGATATTTAGATTTAACAATCGAGGCTTGCTCAAGTGGTTAAGCATCGTTGATTGTGAGCTTAAAGTCACACTGGATGGTAAGTAGGAACACTACTGATCTTATGCCGGATTGGGTAGGACTTTGGAAAGCAAAAGTAACAGAAAATTTGGGGACTCAGGGAATTTGGATGTAGAATCAATATTTGTAAATTAAGTAAAAAATATATATAATAATAAAAAAAGCTACTATATGTGATATAATTAACAATTCAAAAGTTTATATGAAAAACTTGTTTGACTCTCGAAATCCAAATACGGCACATAGATTGGGATGGAGGGAGTAGTTGTTTCAATATATTAGCTTTTGAAAGTATTAGTCTTATTTGTTTATTAGCTAAGAGTGATGACAGGGTAAGAGGCTTGGTTGAGTTTTTCTTAATGTGTGTTTCTATTACTGTATAGGTATGAAATGTTGGAAAAATTCTTCAATAGCATGGATAGTTCAATTCGGCTGCTACATTTGAAGGGATCTGCAACAACTTTCACTAATATTAGTGCGAAAGTAGAGAGTTTGATCGATAAGTATGAAGATCTAATGATGTTTGAACATTTTCATTGATGGTGTTTGCTGTACTGAGAGGATTGTTAATAATTTTGTTCTTTTTGAACTTTTTAGGAGGTTTACTTGCAGTCATTTAGCTCAGCTGAAGTTTATTTTACCTGAAGCCATTGAGATAAAGAAGATTCTCAAGCACGATGAGCGCAGTTGGTGCATGAAGCCGGATCTTTATATCACTTTAAATGCAAATGCAGTTGATAATAGTGAGAAGTGGAAATCTAACAGTAGCAGTGTTCTATTGAGGAAAATATTCCGCTCTCGGCTCTTGGATTTCTTCAAGTCACACCCTGAGGTAATCAATTTTTCTGATGTTTTGATTGTTTGTGTTGAACAATCTCTCATGGTAGGAGTAAGTTTTGCGTACACTGAACCCTCCCAAACCTCACTTGTAGGATTACACTAAGTATATTGTTGTTAAAGATTGAACTATCTGCCAGAATATAGCTGATGCAGTATTGAGATTTATTGGCTTGAATTCATGTTATTTAGAAAGACTAATATGTTCTGAGATGCTATTTGACTTGCTAAGTGCTCTTGTTATTTCAAGCTCATTTTCTGTAAGACATCCCGACCAGTGTTTCATTTGCAAACAATTGCTCTTGAGCATATTAAGAGGAATATGAACACTTTTAACAGCATAGCAGCAGAAGTTTCAAATGGAATATGAGATTTTAAGCTGGAGGTCTTTCATTATACTATACGTTCTTGGGAAAGTGATGCAATTGTTTCTGGCATTTAGATTTGTGCAGTGCCTGTGCAACATTGTAGGTGCTTTAGTCCAGAAAATACTAAACTTTGTATGAGAATGAAGCTATACGTGAAGCACCTAAAGAGTGGTAATACTGTTTCATGAAGCTACAGAGTACTTCAGTGGCTGGCCTGCCATATTGTATGAAAGGAATAGCTTTTGATAAGAAAATTTGTGTTGAATTTGTATTGTGTTTTACTCTGACTATCAGCATTGAATAACCAGCACACACACTTTTACATATATGAGCACCATGTTGTCAGCTTAGACATCGTTGAAGTATAATTAAATGTTTTCCTGTAAATTTTATTTCCATGATAAACAAATAAGATAATTACTGTTTCTGTTTCAGGGTGATGACA-TTCCTGAGGGAATGCTGCCAGGCCCATTCACTCAGTCTAAGCAAGTAGTGACCAACTCATGTAGACCTTCTGGCT</genome_strand>
        <mrna_strand>GATGGAGTTCACCGGATCTTCACCGTCC-ATCGGAAATCATTACCGGCGAATCCATTTCGCAGTGAAAAATCTGCCGGAGTTGTAGCAATTCCGGTGATGGATCAATGGAGAACTAAAACACCGGAGAAACCGATCCAAAATCGCATGGCGCGATCACTGCAGTCCCTGAAAGACGTCAGAGAAGCTTCTCAGAAGCTCCGGAAACACGATCTGATCCAACGCGAGGTTTCTGATCCGTTATTAAGCTACGGTGAAGTGAAATCTCCATTGGTAGCTGGATCGCCGGTTTCTGAACGGAAGAAGCATGTGAACTCGGTAAAGCTGCCGGAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATGTTGGAAAAATTCTTCAATAGCATGGATAGTTCAATTCGGCTGCTACATTTGAAGGGATCTGCAACAACTTTCACTAATATTAGTGCGAAAGTAGAGAGTTTGATCGATAA..............................................................................................GAGGTTTACTTGCAGTCATTTAGCTCAGCTGAAGTTTATTTTACCTGAAGCCATTGAGATAAAGAAGATTCTCAAGCACGATGAGCGCAGTTGGTGCATGAAGCCGGATCTTTATATCACTTTAAATGCAAATGCAGTTGATAATAGTGAGAAGTGGAAATCTAACAGTAGCAGTGTTCTATTGAGG-AAATATTCCGCTCTCGGCTCTTGGATTTCTTCAAGTCACACCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATGACANTTCCTGAGGG-ATGCTGCCAGGCCCATTCACTCAGTCTAAGCAAGTAGTGACCCACTCATGTAGACCTTCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569863" ref_strand="+" ref_description="SGN-U569863 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157360877|emb|CAO70694.1| (e_value=7e-41) unnamed; (*ATH) AT2G31270.1 (e_value=1e-27) | Symbol: CDT1A | Encodes a cyclin-dependent protein kinase. Involved in nuclear DNA replication and plastid division. Located in nucleus and chloroplast. | chr2:13336092-13338907 FORWARD | Aliases: F16D14.11, F16D14_11, ATCDT1A, CDT1A; ">
      <seq>ctcgggctcgtttctctagcttcaataccccattaatgtcccaagttccaccaagaagaaaacagtagcatgttcgtgatgctcctaaattatctctaaaacataactagcatcatgaaatgctcagcacgaggggttgttttggctagttcaccatgccatccacctgctcttcctatgattgaagccaaaaagggagaagatggttctacatccgctctcagcaacccctatgctcgaacctcataagagatgttacatgagtccagatgatccagctgaatcaccaataaaactagctagacacccgtcaactagaagggcggtgctcttcggaactcctgtgaagagtgcaaatgctgatgataaagtctgcgacaatggaacgttttcaactgataatgatattcttgacattcttcctgacaatcttctgcaatcgataggacaaaaggagagtgaagcactagcggagcaaaatccagccatatcccaagcaaaaaggcgcaaacagatgattgcttgtttgcctcacctctttgacatgatttatttcctgtttcaatctattaaacgttctgtcatgacgaaagaggagctcatgcacagagtaatttcaagccatttagagataacggacaaaagtgaagttgaacagacaactcctattactgcaagaattggctcctgaatggatttatgagaaaccagcatctaatggaactcttctcttacttgttagcaagatatcaaatcctgacacaattcgttcaagactagcagaagccaattgagagaaacaagaaactagtgatttgtactttattttaccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="57925" stop="59955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58225" g_stop="58662" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58663" i_stop="58815" i_length="153">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58816" g_stop="59017" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="644" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59018" i_stop="59114" i_length="97">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59115" g_stop="59205" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="736" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59206" i_stop="59555" i_length="350">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59556" g_stop="59655" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="836" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-U569863" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58225" e_stop="58662"/>
          <exon e_start="58816" e_stop="59017"/>
          <exon e_start="59115" e_stop="59205"/>
          <exon e_start="59556" e_stop="59655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGGCTCGTTTCTCCAGCTTCAATACCCC-TTAATGTCCCAAGTTCCACCAAGAAGAAAACAGTAGCATGTTC-TGATGCTCCTAAGTTATCTCTAAAACA-AACTAGCATCATGAAATGCTCAGCAGGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTC-CAGCAACCCCTATGCTCGAACCTCCTAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCAATAAAACTAGCTAGACGCCCGTCAACTAGAAGGTCGTTGCTCTTCGGTACTCCTGTGAAGAGTGCAAATGCTGGTGATAAAGTCTGCGAGAATGGAAGGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGAGAATCTTCTGCAATCGGTAAGAAAACACACACTTGCATATCAATCTTCCTTGATAAAATTTTTTAAGATCAACTACATTGGATTCATTTAAATTTTCATTCCTCAACGTAGCTGAACTACAAAATATTCTGTTTTATGCAACAAGAAGCTAACTTCCATGATTTCACAGATAGGAGAAAAGGAGAGTGAAGCACTAGCGGAGCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCAAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGAAAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAAGTAAGCCACTAAGCCCGGTTGACAATTTTCAGAAGCCTGTAGTCCTTTTGAGATTCATTGGAGCTTCTTTCTGAATCTTGATGTTTCATTACTACAGGTGAAGTTGAACAG-CAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAAACCAGCATCTAATGGAACTCTTCTCTTACTGTAAGCTACAATTCTCAAATTCCAATCATTTGTTTGCTTTGTCCAAAGCAATGATGAGTTTAGAAGATCTATATTTGCCAGTTTCTTGATCAATTTTCGTCGTTAGAATAGATTAGAGTCTCACATTGGTCGGGAAATGGAGTGATAATCTCTAGCATTTAAGGTTGGGTTAGACCCAAGAGTCATATTTCACGTGGTATTAGAACCAAGGGTCGTGTTATAGCTTAAGCCCATAGAGGTATTACAGTTCCGTTCCATATTGATTGAGAAATTAGCTAGTGCTTACTCTTTCCGCGTGAGCTAACTTTTAGAATTAAGCTACATCTAATATCTATATCTTTATTTTGCAGTGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACAAGAAACTAGTGATTTGTACTTTATTTTACCAAAT</genome_strand>
        <mrna_strand>CTCGGGCTCGTTTCTCTAGCTTCAATACCCCATTAATGTCCCAAGTTCCACCAAGAAGAAAACAGTAGCATGTTCGTGATGCTCCTAAATTATCTCTAAAACATAACTAGCATCATGAAATGCTCAGCACGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTCTCAGCAACCCCTATGCTCGAACCTCATAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCAATAAAACTAGCTAGACACCCGTCAACTAGAAGGGCGGTGCTCTTCGGAACTCCTGTGAAGAGTGCAAATGCTGATGATAAAGTCTGCGACAATGGAACGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGACAATCTTCTGCAATCG.........................................................................................................................................................ATAGGACAAAAGGAGAGTGAAGCACTAGCGGAGCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCAAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGAAAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAA.................................................................................................GTGAAGTTGAACAGACAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAAACCAGCATCTAATGGAACTCTTCTCTTACT..............................................................................................................................................................................................................................................................................................................................................................TGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACAAGAAACTAGTGATTTGTACTTTATTTTACCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563614" ref_strand="+" ref_description="SGN-U563614 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|157337673|emb|CAO22019.1| (e_value=6e-58) unnamed; (*ATH) AT2G34860.2 (e_value=9e-53) |; ">
      <seq>agaaaaaagagagagagatggcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattcccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcatatcaattatttcggaatattgtgagagaagagcaataatttggtgttcaatttgcatattgtcttcatatctcataacaatagagaataaaagaagagaaaacagactgttttgtactttggattgtatctggaaaattgttacttaaagtttgtaccatctattatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64384" stop="59544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64084" g_stop="63986" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62829" g_stop="62726" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="203" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="369" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="462" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60472" g_stop="60341" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="594" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60243" g_stop="59844" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="994" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-U563614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>994</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64084" e_stop="63986"/>
          <exon e_start="62829" e_stop="62726"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60341"/>
          <exon e_start="60243" e_stop="59844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTT</genome_strand>
        <mrna_strand>AGAAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590934" ref_strand="-" ref_description="SGN-U590934 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147766588|emb|CAN69523.1| (e_value=4e-25) hypothetical; (*ATH) AT3G13670.1 (e_value=2e-24) | Symbol: None | protein kinase family protein, contains Pfam domains, PF00069: Protein kinase domain | chr3:4469229-4473696 FORWARD | Aliases: MMM17.17; ">
      <seq>tatcgtattacggcaacagctgctacgccagaccaagctgctcttatcctgagtgtacctcgccgaagacctggtgatgagactcaagaaactctgcgaacatctcagtttcccagcacacatgttaaggaaaaatggggaaagaatctgtatctttcttgtctatgctatggacgcactgtatcttaaaacaaatcgtgaccaaattgttgtaacccgacatttggatcttatatcttgttgtttcattgtccaagtgtaaatggatggtggtggtggtaagaagttagatgtgtcttagaatgttatgctataggagaacttttagtttgtcttaaaattatgaaaatgttgtagctgctctgtgtaacagctttctgcttatgatgttgttgttatcctactagtacaggaacaattgttcttgctgcaataattgtttcgtgtactcaaatttctggggaaagttttaatgttatctttacctatcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="66188" stop="64901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65888" g_stop="65760" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65759" i_stop="65566" i_length="194">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65565" g_stop="65201" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="494" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-U590934" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590934" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65888" e_stop="65760"/>
          <exon e_start="65565" e_stop="65201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAGGTAGTGTTTGTGAAATTGTTCTCTACTTTGCCTAATTGTTGTGTTGGCTATTGCATAGGAGCGAGGGTTCTATCCTGTGTGCACCCTAAGGGTAGCGACTAAGGGTTTCCCTCGACAAATACACTCTATTCACATCATTTTTTATTATATGAGCGAGTTGTTGACTTGTGTTCTATCCTTGATTCTTTGTGCAGGAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAAATTTCTGGGGAAAGTTTTAATGTTATCTTTACCTATCGATT</genome_strand>
        <mrna_strand>TATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAG..................................................................................................................................................................................................GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAAATTTCTGGGGAAAGTTTTAATGTTATCTTTACCTATCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577951" ref_strand="+" ref_description="SGN-U577951 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157337674|emb|CAO22020.1| (e_value=0) unnamed; (*ATH) AT3G13670.1 (e_value=0) | Symbol: None | protein kinase family protein, contains Pfam domains, PF00069: Protein kinase domain | chr3:4469229-4473696 FORWARD | Aliases: MMM17.17; (*SWP) sp|P40234|CKI2_SCHPO (e_value=4e-46) Casein kinase I homolog 2 OS=Schizosaccharomyces pombe GN=cki2; ">
      <seq>gacgtgctagtggtcccttggctttggaggtcgcactgaagtttgagcatcgaaacagcaaaggctgtagctatggccctccatatgagtggcaggtttacaatactcttggaggcagccatggagtgcctagagtgcattataaaggacgggcaggagagtattatgtgatggttatggacatgctaggccctagcttatgggatgtatggaattcctctgggcaatcaatgtcagcagaaatggtggcttgtattgcagttgagtcattgtcgattttggaaaagctgcatgcgaaaggttatgttcatggagatgtgaagccagaaaactttttacttggccagccatcaacaccacaagagaagaagttgttcctagttgacttgggactggccacaaagtggaaagacacttcaaaagggcagcatgtcggatatgatcagcgtcctgacacgttcagagggactgttcgctatgcaagtgcacatgctcacttgggaaggactgccagtagaagagatgatttggaatcacttgcatatacactaatttttcttcatcgaggcaggctcccatggcagggctatcagggtgataacaaatcatttttagtctgtaaaaaaaagatggcaacatctccagagatgctttgttgcttctgccctgcaccttttagagaatttcttgatacagtaattaacatgaagtttgatgaagaaccgaaatattcaaagttaatctctttatttgggagcttgcttggagctgatcctgctataaggccgatcaacacagatggtgctcaaaaggctattcaagttggccaaaagcgggggagactaactttaaatgaggaagaagagcagcctcagaagaaaattcgaatcggtgttcctgcgacgcaatggatttcaatatataatgccagaaagccgatgaaacagaggtaccattacaatgtagcagacacaagattggcacagcatgtggagaaagggtctgtggatggtttgtctataagttgtgtagcatcatgttctagcttatgggctatcatcatggatgctggaacgaacttcactagccaagtttatgagctgtcacctttcttcttacacaaggagtggattatggagcaatgggagaaaaactattatattagttctcttgctggtggcataaatggagcctctttagtagtaatgtcaaaaggcacacagttcactcaacagtcttataaagtcagtgagtcatttcccttcaagtggataagcaagaaatggaaagaagggttccatgtgacctccatggcaactgctaacactaggtgggctgttgttatgtcacgcaattcaggcttcagtgatcaggtggtagagcttgatttcctttatcctagtgagggtattcataagaggtgggataatggttatcgtattacggcaacagctgctacgccagaccaagctgctcttatcctgagtgtacctcgccgaagacctggtgatgagactcaagaaactctgcgaacatctcagtttcccagcacacattttaaggaaaaatggggaaagaatctgtatctttcttgtctatgctatggacgcactgtatcttaaaacaaatcgtgaccaaattgttgtaacccgacatttggatcttatatcttgttgtttcattgtccaagtgtaaatggatggtggtggtggtaagaagttagatgtgtcttagaatgttatgctataggagaacttttagtttgtcttaaaattatgaaaatgttgtagctgctctgtgtaacagctttctgcttatgatgttgttgttatcctactagtacaggaacaattgttcttgctgcaataattgtttcgtgtactcaaatttctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="71986" stop="64932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71687" g_stop="71659" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71658" i_stop="71493" i_length="166">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71492" g_stop="71419" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="103" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71418" i_stop="71330" i_length="89">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71329" g_stop="71260" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="173" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71259" i_stop="70234" i_length="1026">
            <donor d_prob="0.511" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70233" g_stop="70178" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="229" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70177" i_stop="69734" i_length="444">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69733" g_stop="69662" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="301" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69661" i_stop="69534" i_length="128">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69533" g_stop="69439" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="396" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69438" i_stop="69362" i_length="77">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69361" g_stop="69295" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="463" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69294" i_stop="69219" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69218" g_stop="69089" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="593" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69088" i_stop="68982" i_length="107">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68981" g_stop="68763" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="812" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="68762" i_stop="68679" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="68678" g_stop="68542" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="949" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="68541" i_stop="67900" i_length="642">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67899" g_stop="67725" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="950" r_stop="1124" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="67724" i_stop="67637" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="67636" g_stop="67546" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1125" r_stop="1215" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="67545" i_stop="66655" i_length="891">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="66654" g_stop="66497" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1216" r_stop="1373" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="66496" i_stop="65949" i_length="548">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="65948" g_stop="65760" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1374" r_stop="1562" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="65759" i_stop="65566" i_length="194">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="65565" g_stop="65232" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1563" r_stop="1896" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-U577951" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1896</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71687" e_stop="71659"/>
          <exon e_start="71492" e_stop="71419"/>
          <exon e_start="71329" e_stop="71260"/>
          <exon e_start="70233" e_stop="70178"/>
          <exon e_start="69733" e_stop="69662"/>
          <exon e_start="69533" e_stop="69439"/>
          <exon e_start="69361" e_stop="69295"/>
          <exon e_start="69218" e_stop="69089"/>
          <exon e_start="68981" e_stop="68763"/>
          <exon e_start="68678" e_stop="68542"/>
          <exon e_start="67899" e_stop="67725"/>
          <exon e_start="67636" e_stop="67546"/>
          <exon e_start="66654" e_stop="66497"/>
          <exon e_start="65948" e_stop="65760"/>
          <exon e_start="65565" e_stop="65232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGCTAGTGGTCCCTTGGCTTTGGAGGTAAAGTGGTTGCATATGAATAATCTATCCACTTTTTCCCGTTATCCTTTTCGACAAGGCTAATTTATCTGTCTACTAATCTTAGCGTCTTCTCGATGCAATTGTTAATGAAATCTTATTTTACGTGATAAAAGAAAACCATATTGATTTTCTTTTATGTCTCTAGGTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAAGTAAGGATTGATATCTTTTAAAGTTACTGTGTACACTTGTACTGAAATGAGATTTGCAGGACTGAAAGTTCCTTTTTTTTTTGGTTCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATGGTATGTTCACCAAGACAGATTTGCATTGATTATAGTAATGGAGGATAAAAAAATTGAGTTGTGGATATTTATTTTTGGGAGAAACATCAAGATAATGAGTTGAGACAGTGAATGTGACCTCTTTTAGCATTCTAATTTCAGCATCCAAAGAGAATTAAATAAAATATATTTAATAGGCAGGCAGCGTGATATATTTCAAGGTTTTAAGAGGGTCTCATATCTGCTCTTACCAAGCTAACAAATAGCTTTAGTGTACAATGGAGGTCTTTATTTTTTATTCACTTATTTAGCCAGGTCCTGTTCTAATTGAATGAGTGGAACTCTTTTGGTAGTTGCTTACTTTCTTTTTGGTATGATTGTCTTTTGAGGGGACTGATTTTGTTTTGCTATTACACTTCCCCTGGATCTCAGAAGTCGTCTTTGATATTAGCTGCCGGGCTTTGGTCTAGTGTTAAGAACGTTACTTGTGATGTGTGGGTTAGGAACACGTCACATGTTCAAACCTTGCTGCAAATGAAAGCCTAGTACTCCTATTTAAGTGGAGAACATTGGAGGGGTGAGCCATCATCCACAGAGTGTGAAACCATGTACCACTGGTCCTGGTGGATTTCTCGACTACAAAAAAAGTGACCATTTTACTTCAAATTGTTAGTCCACTCGTCTTACAAAAATTGTCACTCTTTCCTGTTCAATTTAAGAAAAAAAGGGACCTTTGTCAAGCATATTCTCCTAATTGTTTAGTAAAGAGTCTGCTAGAATCATGTCCGTTTTCTTGCTGTTGAAGATTGATTGATAGAATAAAGATATAATTTTTTGAAATGGGATAAAATTTTGGGACATACACAGAAAGTTAAGGAGAGATAAATATTTCTGATCCGATGAGTTACCAGCAAAGTGGTTGTTAATGATTAGGACCTCTTTTCAATGAACGGATTCTGCTCTGTATGTTTTCTGGACTAGTGAATGCTGTTGTATATAATAATAAAATGTGTGTGCGTATTGACCTTATTATTATCATGTATGCAGGTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATCGTAAGTAGCTAATGCTAGTATTAAACATACTTACTGAACAAAGACTTCTTCAATTGTCAGACCTCCAGAAGTGGCTGCTTTTTCCCCACTCTTTCAGTTATTTTTGATTATTATGATAAATTGATAATAGAAATACCGTCGTTCAATAAGTCAACCTGCTCAAGGATGGCATTCTCAAATTGAAAAATGGTCTAAAATAAGTCACCAATTATTTGACATGAACTATGTAGTAATTCTAATTTCAAAGTTAAATGGTCCTTGATATCCATCCTTAAACACTGGTGATAAGGATCTGCTCGCAATTGTGTATAGTGTAGATTCTGATTTTCTGGGGTTTATTTCTAAGAACAGCAAAAACATCGTTGATAAACTTATTGAGTTTTGGTTTACCATATATCAATGTGTCAGTTGAATATGGTCTGCTCATAAATCCTACTTATGCAGAATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGGGTACGGATTCACTCTTTTCCTGCAATCAGTTTGGTTCTTTTTATTTGCTGAATGTTGAACTACTTTTAATTTGTAGTCATTGTACTTCTCTTTTGAATTCTTCGTAGTGACTTTTTTGTTGATCTCAGTTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGGGTAAGAGAGCTTAGTGTAGGTTTCTGTGTTTGTTAATTTGATAACCCTTTTCCTAATTATTTATCTACCAATTACAGCCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAGGTGTGGTGATGTTCTGCTATCCTTTGCTTAGTTTTCTTATATCTACCCAATACTAACTTCTGTCTATCAATTTCAGAGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAGGTTTCTGCTTTACCTGCTTCTTTCCAGTCTTTACACTGCATACACTTTGTTTCAGTCATTGAACAACCCCCACGTCTCTTGTTACAATTTATATTTCTGGATTGCAGGGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGCTATAAGGCCGATCAACACAGATGGTGCTCAAAAGGTAAGTATTCTAAATTTTATACGAGTCAACAGTAGGTAAGCTTTATTACACTACTATATGGGGCTTATGGTGTAATCATTATAGGCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAGGTACATATATCATGTCACGTGATTTGTCTTTTATGGCAGTTAATAAGTATTTGTCTGTGGTGAACATTAGCTCTGGATTCTTCACCTTAAATGGGGATGTGGTTTGTTGGTTTGGGGGGGGGGGGGGTAATAACACAAGTGGGGTTTGGAGAGGTAAGATATATGCAGAATGGTACTCCTGGAAGTTTTCAACTTCTTGGATTTTGGGAGCAGGTAAAATTAAGCTTCTGCTGGTAATATATTTTGAACTTTTTGGAGGCTGTATATGGTAGTCAGAGAAACAAATATCTGCCAAATTTGGTATATTAGTCAATACTCATTTACTTATTTTATTAAGAAGAATACATGGAGTGTCCTTTGTCTTCTGATGGCATAATCACTAAAGATTTTTCTGGAAGATCTGTTTTATCTTCATCTATGCTCCACAGTATTAGGAGATGATCCTTTTCTATTCGCTCCATAGTGTTGATTGGATAGGTATAGAGGATTGGTTGGCTTTTGTAGAGACCTTGTTCTGCTGTGAGATACAGCCACTTTTTACGCCTAATTATTATGAATATTATTACTTGATAGTTGATACAAAAGAAAAAATCATCTAATGTACCCCAACTTTCCCTAATATTAACATCATGACTTCATTAGGTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAGGTAATTAGAAGTTCCATGTAGTCTTCATGTGGTGTGCAGCTTTTTAGCTTCAGATGTGTTTATCTAATCTTCCAAATGTGTGTTACAGGAGTGGATTATGGAGCAATGGGAGAAAAACTATTATATTAGTTCTCTTGCTGGTGGCATAAATGGAGCCTCTTTAGTAGTAATGTCAAAAGGTGGGTTTCTTTTAACATGCTGTAGGTTAATTCTTTCTACTTGTTTTAATCTTTTACCCACTTTTAGAGAATACAGTTAGATATCTTTTCTTGCTTATCAGTCAGCAAAAGTTACAATTAACTAGCATGTTATGCTTGGTGCATATGGTTTAGTAGGTCACGACATAATTTTGATTGGGCTATTTGTATTACTGCAAGATATGCTTTCTGTTGGTTTCTTTTTTTGTTGGTCCCTCTGAACTTCATCTTGCATTGAAAACAAGCTCTACTGCTGGATCTGTATTTTCCTTCTTCGATTTTATGCATCCAACTATAACATGTATCTCTCTCTCTCTCGTGTTGTAAAATGGCAAGTTTTTATTATTACTCATAAACAGCCCTAAGAATGTGCTGGATTTATATACATTGTGCCAAAAGTGCGAAGACAAAAGTATAGCCCTATCTAAATGTATAATATATGGATTATTGGAGCTCTTAAGCTGTAGTTGCTAGGGTAGTTGTCTCCTGATGTCGTTCTGTGATGATAGTTTCTTATATTTGTAAGGCGAATCAGAAGGTGTTAGCTTTTTATCAGTTTTTATGATGTACGAGTCTAAAAATTGTTCAGTCAGATGGTGTTATATGATGATGGGTTACCTCTTCAGATATTTTTTTGGAGCTGGTAAATGTTGGGTTACGTCTTGTATATGCCAGTTTAACACTAGTTGGTGATATATGGAATAGAAGTTTGATATTTGAGTTGCATTTCGTCATCTAATTGTTGTGGAGGGTATTTTTTCCTATGCAAAGGCAAATGCAGATTGTTTTGCCAGCTTTGAGCTTTTCTGGATGCAGATCTAGTTCCTGGACTATCTTTATTTTTGTATATAATACTTGTGTCATTTTTTGCAGGCACACAGTTCACTCAACAGTCTTATAAAGTCAGTGAGTCATTTCCCTTCAAGTGGATAAGCAAGAAATGGAAAGAAGGGTTCCATGTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAGGTTGTTTGTCTCCCCTCTTTAACACTCTCATACAATATTTAATCTGGTGTTAGTGTTAATACGGTATCTCATTTCCTTCTGCCCCCTCCTCCCTTTGTGGTGATAACCTGGAAAAATTATCGGATAAATTTCCCCATGAAGCGTAGGCTTAAGGATCTAAAAGGGTAGTCACAGTAAGATTTTGTCTGCGAGGAAATGAAGTTGGTTGGTTTAATGACCTTCTGTCCTAAAATTTACTTAATAAGTCCATACCTCGTTTTGTTACACTTGATTTATAATTTCTTTTTTCTTACTAAAAGAAAGTCCATTACTCTTTATTTTTCTTGAAATCATGTAGTTTGTTTATGTTACGGCCCTACCTGAACAGCATCTGTTCTATTGGCTTGTAATACGATATCCTTGAGTTCTGAGGAAACATGAAAGTAGGATACCAAGTCTAGTTGATGAAGCATGGTCATGTGACTAGAGCGTGATTCACAGCCTCCTAGTTGTGTGGGGCAGTAGTTTCTGTCTCATCTGCTAACATGGAGATTTTTAATGTTTTATAGGTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAGGTAGTGTTTGTGAAATTGTTCTCTACTTTGCCTAATTGTTGTGTTGGCTATTGCATAGGAGCGAGGGTTCTATCCTGTGTGCACCCTAAGGGTAGCGACTAAGGGTTTCCCTCGACAAATACACTCTATTCACATCATTTTTTATTATATGAGCGAGTTGTTGACTTGTGTTCTATCCTTGATTCTTTGTGCAGGAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAAATTTCTGGGG</genome_strand>
        <mrna_strand>GACGTGCTAGTGGTCCCTTGGCTTTGGAG......................................................................................................................................................................GTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAA.........................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGG................................................................................................................................TTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGG.............................................................................CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAG............................................................................AGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAG...........................................................................................................GGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGCTATAAGGCCGATCAACACAGATGGTGCTCAAAAG....................................................................................GCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAG........................................................................................GAGTGGATTATGGAGCAATGGGAGAAAAACTATTATATTAGTTCTCTTGCTGGTGGCATAAATGGAGCCTCTTTAGTAGTAATGTCAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACAGTTCACTCAACAGTCTTATAAAGTCAGTGAGTCATTTCCCTTCAAGTGGATAAGCAAGAAATGGAAAGAAGGGTTCCATGTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATTTTAAG..................................................................................................................................................................................................GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAAATTTCTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577642" ref_strand="+" ref_description="SGN-U577642 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157337674|emb|CAO22020.1| (e_value=2e-22) unnamed; (*ATH) AT3G13670.1 (e_value=3e-19) | Symbol: None | protein kinase family protein, contains Pfam domains, PF00069: Protein kinase domain | chr3:4469229-4473696 FORWARD | Aliases: MMM17.17; ">
      <seq>atacccacctctctctctcctcccccactctctctctaaaagtagtgctttttcatcgacattcacgcggattacagatcgtttacagtatttgaacaaaccctagcatcaaaagtttgtttttttttcttccagtttttgaatttggtttcagaaattcaatcgagtttgagtttgttgtagaaacggatttggggttgtttttgtatgtttagggttttgattatgatgatgaaagtataagtgatgtgttgcaatcggaatcgggttgttgtttttgttcaattttatatgggtaaaaaagaatgccggagttgcggagtggggtatgtcggcgccgtgctcctcctccagtagttgaaacaaaacccgaaacgaaaaaaagggttggtggcggtggtgttggtggtcggagttatataaagactcgtgctgctaaggctaaggcagcggaagcagaagcaaagcttgtggaagtagaggaagaggaagtgaaggagaacgaaaacgagagagtagagggagaagaagttgaagaaaagcataagatgggtgatgagagtggtggtttgagtgctaataataaagtgactgcacaggaagatgaaagtacttctctttttcctgatcaggtgcaagtaggaggatctccagtttataaggttgaaaggaagctaggtaaaggtggttttggacaggtgtttttgggtcgccgtcttaccggtggaaatgaacgtgctagtggtcccttggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="73827" stop="71363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73527" g_stop="72896" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72895" i_stop="71788" i_length="1108">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71787" g_stop="71663" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="757" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-U577642" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73527" e_stop="72896"/>
          <exon e_start="71787" e_stop="71663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCCACCTCTCTCTCTCCTCCCCCACTCTCTCTCTAAAAGTAGTGCTTTTTCATCGACATTCACGCGGATTACAGATCGTTTACAGTATTTGAACAAACCCTAGCATCAAAAGTTTGTTTTTTTTTCTTCCAGTTTTTGAATTTGGTTTCAGAAATTCAATCGAGTTTGAGTTTGTTGTAGAAACGGATTTGGGGTTGTTTTTGTATGTTTAGGGTTTTGATTATGATGATGAAAGTATAAGTGATGTGTTGCAATCGGAATCGGGTTGTTGTTTTTGTTCAATTTTATATGGGTAAAAAAGAATGCCGGAGTTGCGGAGTGGGGTATGTCGGCGCCGTGCTCCTCCTCCAGTAGTTGAAACAAAACCCGAAACGAAGAAAAGGGTTGGTGGCGGTGGTGTTGGTGGTCGGAGTTATATAAAGACTCGTGCTGCTAAGGCTAAGGCAGCGGAAGCAGAAGCAAAGCTTGTGGAAGTAGAGGAAGAGGAAGTGAAGGAGAACGAAAACGAGAGAGTAGAGGGAGAAGAAGTTGAAGAAGAGCATAAGATGGGTGATGAGAGTGGTGGTTTGAGTGCTAATAATAAAGTGACTGCACAGGAAGATGAAAGTACTTCTCTTTTTCCTGATCAGGTGGGTGATCATTCATCTCTTCATCTGAATCTTAAAAAAAAACTAGCTTTACATCTATATATGCTTGGTTCTTATACATGATCATCTTGTTTTAGAAAATTTTGATGTTGTGTCTTTGTTGTTTGAAGCAAGTGATTGTGTTGTTTTGTTAGGTGTTGTGGGATTTTGTGTTTTTGAATCATTATAAATGTGTATTGCTCGGTTAAATTCGGGCTATTTCTGGAAAAAAGAGAGTAGATTTGGTACTATATTGACCATGGTGGATTGTTTTCCATTGTATTGATGTCATTGGTCTTACTTACATACATGTTTTGCTTATGTTTTGGAATTGTTATCTATATGTAGCATCTTTCTCTTCCCTGATCAGGTCGGTGATCATCAATTTCTGTATCTAATCCCAAAAAAGCTAGTTGGGGCTGGTTTTAGTGAAGCCTGCAAATTTATGCGATGTTCTTAGATGTTACATCTTCCTTTAGATAATTTTGATGTTATGTCTTTCTTGTTTGAAGCAATGTGTTGTTTTGCTAGGTGTTCTAGGTGTTTAAAGGGATTTTATGTTTTGAATCATAATAAATGTGTATTTCTATGTTAAATTCTGGCTATTTCTTGTAAAAGGAAGTAAATTTGGTACTATATTGACCTTGAGGAGATAGTTGGAGATCGCATCAATGTCGTTAGTCCTACTCAAATACATGTTTTGTGTATGCTTTAGCATTGCTATCTATTTTTAGCCGCTATCATATATTTGATAGTAGGTATGTGAAGTAAATAGGGAATACTAGCATCTGAGCTCTAGAATTTCTTAATTCTAATACAATGTACTTACTATATCGTATATAATTACACAGTTATACCTGCTACTTAGTATGTGGAAGTTGCTTGATCCAGCCATAGACGACTGTCCATTCCCCTCCCATGTGATTCTCATCATTTCTGCAAGCCTTTTTAGCTTAAAAAAGCTTGATGACACATGTGACATTTAATTGCTAGAATCTCGATATTGAGCTTTACTGTCGTCGTGTTCTAAGTTCTTTTTTTTCTTCAAATCTTTGTATTAAATGTCGAAATTTCACTCATTTTTTGCTTTCTGTTTGAATGTTGTTTTCAGGTGCAAGTAGGAGGATCTCCAGTTTATAAGGTTGAAAGGAAGCTAGGTAAAGGTGGTTTTGGACAGGTGTTTTTGGGTCGCCGTCTTACCGGTGGAAATGAACGTGCTAGTGGTCCCTTGGCTTT</genome_strand>
        <mrna_strand>ATACCCACCTCTCTCTCTCCTCCCCCACTCTCTCTCTAAAAGTAGTGCTTTTTCATCGACATTCACGCGGATTACAGATCGTTTACAGTATTTGAACAAACCCTAGCATCAAAAGTTTGTTTTTTTTTCTTCCAGTTTTTGAATTTGGTTTCAGAAATTCAATCGAGTTTGAGTTTGTTGTAGAAACGGATTTGGGGTTGTTTTTGTATGTTTAGGGTTTTGATTATGATGATGAAAGTATAAGTGATGTGTTGCAATCGGAATCGGGTTGTTGTTTTTGTTCAATTTTATATGGGTAAAAAAGAATGCCGGAGTTGCGGAGTGGGGTATGTCGGCGCCGTGCTCCTCCTCCAGTAGTTGAAACAAAACCCGAAACGAAAAAAAGGGTTGGTGGCGGTGGTGTTGGTGGTCGGAGTTATATAAAGACTCGTGCTGCTAAGGCTAAGGCAGCGGAAGCAGAAGCAAAGCTTGTGGAAGTAGAGGAAGAGGAAGTGAAGGAGAACGAAAACGAGAGAGTAGAGGGAGAAGAAGTTGAAGAAAAGCATAAGATGGGTGATGAGAGTGGTGGTTTGAGTGCTAATAATAAAGTGACTGCACAGGAAGATGAAAGTACTTCTCTTTTTCCTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGTAGGAGGATCTCCAGTTTATAAGGTTGAAAGGAAGCTAGGTAAAGGTGGTTTTGGACAGGTGTTTTTGGGTCGCCGTCTTACCGGTGGAAATGAACGTGCTAGTGGTCCCTTGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="515" PGL_stop="10076"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="515" e_stop="574"/>
            <exon e_start="2013" e_stop="2148"/>
            <exon e_start="2356" e_stop="2467"/>
            <exon e_start="3070" e_stop="3169"/>
            <exon e_start="5213" e_stop="5291"/>
            <exon e_start="5382" e_stop="5553"/>
            <exon e_start="5681" e_stop="5761"/>
            <exon e_start="5877" e_stop="6057"/>
            <exon e_start="6572" e_stop="6679"/>
            <exon e_start="7710" e_stop="7737"/>
            <exon e_start="7827" e_stop="7917"/>
            <exon e_start="9130" e_stop="9220"/>
            <exon e_start="9316" e_stop="9394"/>
            <exon e_start="9932" e_stop="10076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.983"/>
          <exon-intron don_prob="0.990" acc_prob="0.976" e_score="0.993"/>
          <exon-intron don_prob="0.974" acc_prob="0.829" e_score="0.982"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.275" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.959" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.516" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.195" acc_prob="0.555" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="515" e_stop="574" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="575" i_stop="2012" i_length="1438"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="2013" e_stop="2148" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.976">
            <gDNA_intron_boundary i_start="2149" i_stop="2355" i_length="207"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="2356" e_stop="2467" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.829">
            <gDNA_intron_boundary i_start="2468" i_stop="3069" i_length="602"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3070" e_stop="3169" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3170" i_stop="5212" i_length="2043"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5213" e_stop="5291" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.275">
            <gDNA_intron_boundary i_start="5292" i_stop="5381" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="5382" e_stop="5553" e_length="172"/>
          </exon>
          <intron i_serial="6" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5554" i_stop="5680" i_length="127"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5681" e_stop="5761" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5762" i_stop="5876" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5877" e_stop="6057" e_length="181"/>
          </exon>
          <intron i_serial="8" don_prob="0.980" acc_prob="0.950">
            <gDNA_intron_boundary i_start="6058" i_stop="6571" i_length="514"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="6572" e_stop="6679" e_length="108"/>
          </exon>
          <intron i_serial="9" don_prob="0.516" acc_prob="0.923">
            <gDNA_intron_boundary i_start="6680" i_stop="7709" i_length="1030"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="7710" e_stop="7737" e_length="28"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="7827" e_stop="7917" e_length="91"/>
          </exon>
          <intron i_serial="11" don_prob="0.944" acc_prob="0.970">
            <gDNA_intron_boundary i_start="7918" i_stop="9129" i_length="1212"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="9130" e_stop="9220" e_length="91"/>
          </exon>
          <intron i_serial="12" don_prob="0.195" acc_prob="0.555">
            <gDNA_intron_boundary i_start="9221" i_stop="9315" i_length="95"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="9316" e_stop="9394" e_length="79"/>
          </exon>
          <intron i_serial="13" don_prob="0.951" acc_prob="0.957">
            <gDNA_intron_boundary i_start="9395" i_stop="9931" i_length="537"/>
          </intron>
          <exon e_serial="14" e_score="0.986">
            <gDNA_exon_boundary e_start="9932" e_stop="10076" e_length="145"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="515" stop="574"/>
              <exon start="2013" stop="2148"/>
              <exon start="2356" stop="2467"/>
              <exon start="3070" stop="3169"/>
              <exon start="5213" stop="5291"/>
              <exon start="5382" stop="5553"/>
              <exon start="5681" stop="5761"/>
              <exon start="5877" stop="6057"/>
              <exon start="6572" stop="6679"/>
              <exon start="7710" stop="7737"/>
              <exon start="7827" stop="7917"/>
              <exon start="9130" stop="9220"/>
              <exon start="9316" stop="9394"/>
              <exon start="9932" stop="10076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTACAGTGAATGAGTGTTGCTACTTGATTGAGCCCATGCCTGCTACACCTATGAAGAAG : AGTGCTACCCGTGGTGGGATTGGGAATGTATTCAACAAATTAACAAGCAAAATTGGAGATCCCGTTGACTTTGAACTTCCAGATTGGTTGAGTAAATGGCAACCCACTCCCTATCCCTATACCTCTATAAGGCGAA : ATATATACCTCACCAATAAGGGTAAGCGGCGGCTAGAAGATGATGGCATATCTTGTACCTGCAGTTCAACGGCAGAATCTTCGGACGTGTGTGGCATGGATTGCCTTTGTAG : CATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG : ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG : TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG : GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA : GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT : AAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAG : GATTCTCAAACTGAAGTTCCCCCAAAAG : GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG : TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG : ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG : GTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGCAAAGTTTCATTTTAACATATTCT</gDNA_template>
            <first_frame> A  T  V  N  E  C  C  Y  L  I  E  P  M  P  A  T  P  M  K  K  :  S  A  T  R  G  G  I  G  N  V  F  N  K  L  T  S  K  I  G  D  P  V  D  F  E  L  P  D  W  L  S  K  W  Q  P  T  P  Y  P  Y  T  S  I  R  R   : N  I  Y  L  T  N  K  G  K  R  R  L  E  D  D  G  I  S  C  T  C  S  S  T  A  E  S  S  D  V  C  G  M  D  C  L  C  S :   M  L  W  S  S  C  T  S  G  C  K  C  G  S  S  C  L  N  K  P  F  H  Q  R  P  V  K  K  M  K  I  V  K  :  T  E  K  C  G  T  G  I  V  A  D  E  D  I  K  T  K  E  F  V  V  E  Y  V  G  E   : V  I  D  D  K  T  C  E  E  R  L  W  K  L  K  H  S  G  E  T  N  F  Y  L  C  E  I  N  R  D  M  V  I  D  A  T  Y  K  G  N  K  S  R  Y  I  N  H  S  C  C  P  N  T  E  M  Q  R  W :   M  I  D  G  E  N  R  I  G  I  F  A  T  R  D  I  K  R  G  E  H  L  T  Y  D  Y  Q :   F  V  Q  F  G  A  D  Q  D  C  H  C  G  A  I  N  C  K  R  K  L  G  I  R  P  N  K  L  K  L  P  S  S  D  A  A  A  L  K  L  V  A  C  Q  V  A  A  P  F  P  K  E  K  V  L  L  S  A  K  H  :  K  N  T  Q  Q  F  Q  T  L  C  G  L  E  L  K  E  R  Q  H  E  D  H  E  *  Y  M  *  S  *  N  R  P  T  F  S  E  :  D  S  Q  T  E  V  P  P  K   : G  N  W  S  S  D  S  A  R  K  I  Q  H  P  R  N  C  T  G  Q  I  I  R  I  I  R  Y  S  D  Q  S :   P  V  D  S  L  E  S  R  I  P  D  V  S  S  S  F  G  I  I  K  Q  F  D  R  I  T  K  K  H  L  :  I  M  F  E  D  G  S  T  E  H  L  D  L  S  K  E  D  W  R  F  C  N  F  A  *  S   : G  L  K  L  S  K  *  R  Y  T  *  F  N  L  S  S  *  Y  A  I  Y  S  *  Q  S  K  I  A  K  Y  P  L  P  L  L  L  L  Y  Q  M  C  K  V  S  F  *  H  I   </first_frame>
            <second_frame>  L  Q  *  M  S  V  A  T  *  L  S  P  C  L  L  H  L  *  R  R :   V  L  P  V  V  G  L  G  M  Y  S  T  N  *  Q  A  K  L  E  I  P  L  T  L  N  F  Q  I  G  *  V  N  G  N  P  L  P  I  P  I  P  L  *  G  E  :  I  Y  T  S  P  I  R  V  S  G  G  *  K  M  M  A  Y  L  V  P  A  V  Q  R  Q  N  L  R  T  C  V  A  W  I  A  F  V   : A  C  Y  G  L  A  A  P  R  D  V  N  V  G  V  L  V  *  I  S  H  S  I  N  V  L  *  R  R  *  K  *  *  R :   L  R  N  V  A  L  G  L  W  Q  M  K  I  S  R  Q  K  S  L  L  *  S  M  L  E  K  :  L  L  M  T  R  H  V  K  S  D  F  G  N  *  S  T  V  G  K  Q  I  F  T  C  V  R  S  I  G  I  W  *  L  M  P  L  I  R  E  T  N  P  D  T  L  I  I  A  V  V  Q  I  L  R  C  R  D   : G  *  L  M  V  R  I  E  L  A  Y  L  Q  R  V  T  L  K  G  A  S  I  *  P  T  I  I   : S  L  F  N  L  V  Q  I  K  I  V  T  V  V  L  *  I  A  S  E  S  W  E  S  D  L  T  N  *  N  F  L  L  Q  M  L  L  H  *  S  *  W  H  A  R  *  L  R  P  F  P  K  R  K  Y  C  Y  R  Q  N  I :   K  T  H  N  N  F  K  L  Y  V  D  *  S  L  K  K  G  N  T  R  I  M  S  N  I  C  E  A  E  T  D  L  L  F  L  R :   I  L  K  L  K  F  P  Q  K  :  E  I  G  V  L  T  L  L  G  K  S  S  I  L  G  I  A  Q  V  K  L  *  E  *  F  A  I  L  T  R   : V  L  L  I  H  W  S  H  E  Y  L  M  F  P  V  P  L  E  S  *  N  S  L  T  E  S  P  K  N  I  * :   S  C  L  K  T  V  V  L  S  T  L  T  C  Q  K  K  I  G  D  F  V  T  L  L  N  R  :  V  L  N  C  R  N  K  D  I  H  D  S  T  S  V  A  D  T  R  Y  I  L  N  S  P  K  L  Q  S  I  L  C  L  C  S  C  C  T  K  C  A  K  F  H  F  N  I  F  </second_frame>
            <third_frame>   Y  S  E  *  V  L  L  L  D  *  A  H  A  C  Y  T  Y  E  E   : E  C  Y  P  W  W  D  W  E  C  I  Q  Q  I  N  K  Q  N  W  R  S  R  *  L  *  T  S  R  L  V  E  *  M  A  T  H  S  L  S  L  Y  L  Y  K  A  K :   Y  I  P  H  Q  *  G  *  A  A  A  R  R  *  W  H  I  L  Y  L  Q  F  N  G  R  I  F  G  R  V  W  H  G  L  P  L  *  :  H  A  M  V  *  L  H  L  G  M  *  M  W  E  F  L  S  E  *  A  I  P  S  T  S  C  E  E  D  E  N  S  E   : D  *  E  M  W  H  W  D  C  G  R  *  R  Y  Q  D  K  R  V  C  C  R  V  C  W  R  S :   Y  *  *  Q  D  M  *  R  A  T  L  E  I  E  A  Q  W  G  N  K  F  L  L  V  *  D  Q  *  G  Y  G  D  *  C  H  L  *  G  K  Q  I  Q  I  H  *  S  *  L  L  S  K  Y  *  D  A  E  M  :  D  D  *  W  *  E  *  N  W  H  I  C  N  A  *  H  *  K  G  R  A  S  D  L  R  L  S  :  V  C  S  I  W  C  R  S  R  L  S  L  W  C  Y  K  L  Q  A  K  A  G  N  Q  T  *  Q  T  K  T  S  F  F  R  C  C  C  T  K  A  S  G  M  P  G  S  C  A  L  S  Q  R  E  S  T  A  I  G  K  T   : *  K  H  T  T  I  S  N  S  M  W  T  R  A  *  R  K  A  T  R  G  S  *  V  I  Y  V  K  L  K  Q  T  Y  F  F  *   : G  F  S  N  *  S  S  P  K  R :   K  L  E  F  *  L  C  S  E  N  P  A  S  S  E  L  H  R  S  N  Y  K  N  N  S  L  F  *  P  E  :  S  C  *  F  T  G  V  T  N  T  *  C  F  Q  F  L  W  N  H  K  T  V  *  Q  N  H  Q  K  T  F   : D  H  V  *  R  R  *  Y  *  A  P  *  L  V  K  R  R  L  A  I  L  *  L  C  L  I  G :   S  *  T  V  E  I  K  I  Y  M  I  Q  P  Q  *  L  I  R  D  I  F  L  T  V  Q  N  C  K  V  S  S  A  F  A  P  A  V  P  N  V  Q  S  F  I  L  T  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="515" stop="574"/>
                    <exon start="2013" stop="2148"/>
                    <exon start="2356" stop="2467"/>
                    <exon start="3070" stop="3169"/>
                    <exon start="5213" stop="5291"/>
                    <exon start="5382" stop="5553"/>
                    <exon start="5681" stop="5761"/>
                    <exon start="5877" stop="6057"/>
                    <exon start="6572" stop="6643"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATVNECCYLIEPMPATPMKKSATRGGIGNVFNKLTSKIGDPVDFELPDWLSKWQPTPYPYTSIRRNIYLTNKGKRRLEDDGISCTCSSTAESSDVCGMDCLCSMLWSSCTSGCKCGSSCLNKPFHQRPVKKMKIVKTEKCGTGIVADEDIKTKEFVVEYVGEVIDDKTCEERLWKLKHSGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQRWMIDGENRIGIFATRDIKRGEHLTYDYQFVQFGADQDCHCGAINCKRKLGIRPNKLKLPSSDAAALKLVACQVAAPFPKEKVLLSAKHKNTQQFQTLCGLELKERQHEDHE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6659" stop="6679"/>
                    <exon start="7710" stop="7737"/>
                    <exon start="7827" stop="7917"/>
                    <exon start="9130" stop="9220"/>
                    <exon start="9316" stop="9390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRPTFSEDSQTEVPPKGNWSSDSARKIQHPRNCTGQIIRIIRYSDQSPVDSLESRIPDVSSSFGIIKQFDRITKKHLIMFEDGSTEHLDLSKEDWRFCNFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11691" PGL_stop="15547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11691" e_stop="11849"/>
            <exon e_start="12635" e_stop="12831"/>
            <exon e_start="14289" e_stop="14369"/>
            <exon e_start="14496" e_stop="14726"/>
            <exon e_start="14942" e_stop="15019"/>
            <exon e_start="15488" e_stop="15547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.998" e_score="0.994"/>
          <exon-intron don_prob="0.862" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="11691" e_stop="11849" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11850" i_stop="12634" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12635" e_stop="12831" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.862" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12832" i_stop="14288" i_length="1457"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14289" e_stop="14369" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.906" acc_prob="0.988">
            <gDNA_intron_boundary i_start="14370" i_stop="14495" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14496" e_stop="14726" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.916">
            <gDNA_intron_boundary i_start="14727" i_stop="14941" i_length="215"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14942" e_stop="15019" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.988">
            <gDNA_intron_boundary i_start="15020" i_stop="15487" i_length="468"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15488" e_stop="15547" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11691" stop="11849"/>
              <exon start="12635" stop="12831"/>
              <exon start="14289" stop="14369"/>
              <exon start="14496" stop="14726"/>
              <exon start="14942" stop="15019"/>
              <exon start="15488" stop="15547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGAATTTCACTTTCTTCAGTGCAAATTCGAATTTGAATTTCAATGGCGACACTTTCATGGAGGCACCATACACTAATTCAAGCTCTACTCTCTCGTGGTCCGCTTAAAGAGAAGGATTTTCAATCTATATTCACCAGAATCATCGACAAATCCTCAG : GTAATCATCAGTCACTATTCAATGAATACCTGAGAAAGATAAACGGAGAGCTCGCTTATGTGCAGTTAGAGCTACGGGCATGTAGAAACCAGTATGACGGACATGTGCATTATGGTGTTGTGAACAATGTTTCAGATGAGTCATCCAAACTTGGTACTAAATATTCAGTTCCCCAGATAGCTTTCTATAAAGGCATT : ATTGAAGCAATTGTTCAAGACGCAGCAGCTCAGGGATTTATATCGACCATTGATGCACTGAACATACGGCTCGAAAATCAG : TTTCTAGCTGGAACAGAATCCCAGTCTCAGAGAGGTCATATTCCTGCAGCGTTTAGAAATTTTTCAATGTCTCAAAAGGAGAGGACCCTTGAGGAACTTGCGAGGGACCGCTGGCTTTCTCTAACAGATGGTAAGATAGGACTAGGAGTTCGTTCGTTCCTTGATCTCAGAAGTTGGTTTCGCAGTAATGAGGTTCCAGCATGTGAAGTTTGCAATGAAGCTGCTGTGAAG : GCTGAGCTTTGCAAAAATGAAGGCTGTAATGTTCGTATGCATATGTACTGTCTGAGAATGAAGTTCTCCAAAAGCAAG : GCTGAGAAAGTTTGTCCCGGTTGTGGGACAAGATGGCATTACAACATTGCAAAAGTAGAA</gDNA_template>
            <first_frame> A  E  F  H  F  L  Q  C  K  F  E  F  E  F  Q  W  R  H  F  H  G  G  T  I  H  *  F  K  L  Y  S  L  V  V  R  L  K  R  R  I  F  N  L  Y  S  P  E  S  S  T  N  P  Q  :  V  I  I  S  H  Y  S  M  N  T  *  E  R  *  T  E  S  S  L  M  C  S  *  S  Y  G  H  V  E  T  S  M  T  D  M  C  I  M  V  L  *  T  M  F  Q  M  S  H  P  N  L  V  L  N  I  Q  F  P  R  *  L  S  I  K  A  L :   L  K  Q  L  F  K  T  Q  Q  L  R  D  L  Y  R  P  L  M  H  *  T  Y  G  S  K  I  S :   F  *  L  E  Q  N  P  S  L  R  E  V  I  F  L  Q  R  L  E  I  F  Q  C  L  K  R  R  G  P  L  R  N  L  R  G  T  A  G  F  L  *  Q  M  V  R  *  D  *  E  F  V  R  S  L  I  S  E  V  G  F  A  V  M  R  F  Q  H  V  K  F  A  M  K  L  L  *  R :   L  S  F  A  K  M  K  A  V  M  F  V  C  I  C  T  V  *  E  *  S  S  P  K  A  R :   L  R  K  F  V  P  V  V  G  Q  D  G  I  T  T  L  Q  K  *   </first_frame>
            <second_frame>  Q  N  F  T  F  F  S  A  N  S  N  L  N  F  N  G  D  T  F  M  E  A  P  Y  T  N  S  S  S  T  L  S  W  S  A  *  R  E  G  F  S  I  Y  I  H  Q  N  H  R  Q  I  L  R :   *  S  S  V  T  I  Q  *  I  P  E  K  D  K  R  R  A  R  L  C  A  V  R  A  T  G  M  *  K  P  V  *  R  T  C  A  L  W  C  C  E  Q  C  F  R  *  V  I  Q  T  W  Y  *  I  F  S  S  P  D  S  F  L  *  R  H   : Y  *  S  N  C  S  R  R  S  S  S  G  I  Y  I  D  H  *  C  T  E  H  T  A  R  K  S   : V  S  S  W  N  R  I  P  V  S  E  R  S  Y  S  C  S  V  *  K  F  F  N  V  S  K  G  E  D  P  *  G  T  C  E  G  P  L  A  F  S  N  R  W  *  D  R  T  R  S  S  F  V  P  *  S  Q  K  L  V  S  Q  *  *  G  S  S  M  *  S  L  Q  *  S  C  C  E   : G  *  A  L  Q  K  *  R  L  *  C  S  Y  A  Y  V  L  S  E  N  E  V  L  Q  K  Q   : G  *  E  S  L  S  R  L  W  D  K  M  A  L  Q  H  C  K  S  R  </second_frame>
            <third_frame>   R  I  S  L  S  S  V  Q  I  R  I  *  I  S  M  A  T  L  S  W  R  H  H  T  L  I  Q  A  L  L  S  R  G  P  L  K  E  K  D  F  Q  S  I  F  T  R  I  I  D  K  S  S   : G  N  H  Q  S  L  F  N  E  Y  L  R  K  I  N  G  E  L  A  Y  V  Q  L  E  L  R  A  C  R  N  Q  Y  D  G  H  V  H  Y  G  V  V  N  N  V  S  D  E  S  S  K  L  G  T  K  Y  S  V  P  Q  I  A  F  Y  K  G  I  :  I  E  A  I  V  Q  D  A  A  A  Q  G  F  I  S  T  I  D  A  L  N  I  R  L  E  N  Q  :  F  L  A  G  T  E  S  Q  S  Q  R  G  H  I  P  A  A  F  R  N  F  S  M  S  Q  K  E  R  T  L  E  E  L  A  R  D  R  W  L  S  L  T  D  G  K  I  G  L  G  V  R  S  F  L  D  L  R  S  W  F  R  S  N  E  V  P  A  C  E  V  C  N  E  A  A  V  K  :  A  E  L  C  K  N  E  G  C  N  V  R  M  H  M  Y  C  L  R  M  K  F  S  K  S  K  :  A  E  K  V  C  P  G  C  G  T  R  W  H  Y  N  I  A  K  V  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11729" stop="11849"/>
                    <exon start="12635" stop="12831"/>
                    <exon start="14289" stop="14369"/>
                    <exon start="14496" stop="14726"/>
                    <exon start="14942" stop="15019"/>
                    <exon start="15488" stop="15547"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISMATLSWRHHTLIQALLSRGPLKEKDFQSIFTRIIDKSSGNHQSLFNEYLRKINGELAYVQLELRACRNQYDGHVHYGVVNNVSDESSKLGTKYSVPQIAFYKGIIEAIVQDAAAQGFISTIDALNIRLENQFLAGTESQSQRGHIPAAFRNFSMSQKERTLEELARDRWLSLTDGKIGLGVRSFLDLRSWFRSNEVPACEVCNEAAVKAELCKNEGCNVRMHMYCLRMKFSKSKAEKVCPGCGTRWHYNIAKVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="19549" PGL_stop="16736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19549" e_stop="19342"/>
            <exon e_start="17536" e_stop="16736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19549" e_stop="19342" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.980">
            <gDNA_intron_boundary i_start="19341" i_stop="17537" i_length="1805"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="17536" e_stop="16736" e_length="801"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19549" stop="19342"/>
              <exon start="17536" stop="16736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583301" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGTGAGGTGGCGACTGTTACCGCCGCCGGCTGCGGCATCTCTGCCACCCAATTCCGCCGTCATCGACGTTTGTGCCACGGCGGTGGTTTCATCTATAGCTTTGTACACTGAAAAATTACTGATTTTGAATTTTCGATGATACCCAGATGGAAGAAACATAGCAAAGAATGGTTTTTGTGGATCAGATCTGTATTCATCAAATGATG : GTATTTTCCATGTTAAGAATCTCGAAGCCAATCGATTGAAGACTAGTGCTCGAAAAAGTTATGACGTTGCTGGATGGAATCAGAAGATAAAAACTTATTGTTCGTTTGAAGGAAATGGCACTATGCCTCTCCCTAAAATGTTTAATAGATTGTACGACCAGGGCATGTGGAAGACGAGCTGCTTTCTTATATCACAATGATCAGTCTTCGGAAATTGATGATATAGTGGTTTGGAAGACGAGGCAAAAAAAGCTTACGAAGCAACCTAGTTGAATGTTCAAATCAATTGACCACTTTGATTTGGTAATACAACTATAGCCAAGACAATGCTTCATTATAAGTGCATAACTTTTCACTTTATTGTTTGAGCATTGTGTTGATTTCTCTAAACTTGTTTTTCGTTGAACAAGATTGTTTTTTCATATACTCATGGAAAGCAACACCGTGCTCAGAAGTTAGAGTGAAATGTTATGCATTTGTGATTATATATTTTCTTGGCTAGAGTTGTATTGCCAAGTGAAGTGTTTTAATTGATTTGAACCTTCGAGTGAGTTGCTTCGTGATCTTCTTATGCCTTAGCTTCAGAACTTACCACTATATCATCAATTCTCGAAGAGTGTGGCCTACCTGAATGCTCTCACTAAACTATTCAGACTGTTGTAAATCTCTACTGTTGAGGCTTTATTTTTGGCAGTTCTTAAATGTGTATCTTAAGTTTTGTAATTAATTTATGTTTGTTTAGTATATCTCTGTTGTTACCCCTTTGTAATCTTTTGGATTCAATGATGAAGTTGGTTTGGA</gDNA_template>
            <first_frame> V  V  R  W  R  L  L  P  P  P  A  A  A  S  L  P  P  N  S  A  V  I  D  V  C  A  T  A  V  V  S  S  I  A  L  Y  T  E  K  L  L  I  L  N  F  R  *  Y  P  D  G  R  N  I  A  K  N  G  F  C  G  S  D  L  Y  S  S  N  D   : G  I  F  H  V  K  N  L  E  A  N  R  L  K  T  S  A  R  K  S  Y  D  V  A  G  W  N  Q  K  I  K  T  Y  C  S  F  E  G  N  G  T  M  P  L  P  K  M  F  N  R  L  Y  D  Q  G  M  W  K  T  S  C  F  L  I  S  Q  *  S  V  F  G  N  *  *  Y  S  G  L  E  D  E  A  K  K  A  Y  E  A  T  *  L  N  V  Q  I  N  *  P  L  *  F  G  N  T  T  I  A  K  T  M  L  H  Y  K  C  I  T  F  H  F  I  V  *  A  L  C  *  F  L  *  T  C  F  S  L  N  K  I  V  F  S  Y  T  H  G  K  Q  H  R  A  Q  K  L  E  *  N  V  M  H  L  *  L  Y  I  F  L  A  R  V  V  L  P  S  E  V  F  *  L  I  *  T  F  E  *  V  A  S  *  S  S  Y  A  L  A  S  E  L  T  T  I  S  S  I  L  E  E  C  G  L  P  E  C  S  H  *  T  I  Q  T  V  V  N  L  Y  C  *  G  F  I  F  G  S  S  *  M  C  I  L  S  F  V  I  N  L  C  L  F  S  I  S  L  L  L  P  L  C  N  L  L  D  S  M  M  K  L  V  W  </first_frame>
            <second_frame>  *  *  G  G  D  C  Y  R  R  R  L  R  H  L  C  H  P  I  P  P  S  S  T  F  V  P  R  R  W  F  H  L  *  L  C  T  L  K  N  Y  *  F  *  I  F  D  D  T  Q  M  E  E  T  *  Q  R  M  V  F  V  D  Q  I  C  I  H  Q  M  M  :  V  F  S  M  L  R  I  S  K  P  I  D  *  R  L  V  L  E  K  V  M  T  L  L  D  G  I  R  R  *  K  L  I  V  R  L  K  E  M  A  L  C  L  S  L  K  C  L  I  D  C  T  T  R  A  C  G  R  R  A  A  F  L  Y  H  N  D  Q  S  S  E  I  D  D  I  V  V  W  K  T  R  Q  K  K  L  T  K  Q  P  S  *  M  F  K  S  I  D  H  F  D  L  V  I  Q  L  *  P  R  Q  C  F  I  I  S  A  *  L  F  T  L  L  F  E  H  C  V  D  F  S  K  L  V  F  R  *  T  R  L  F  F  H  I  L  M  E  S  N  T  V  L  R  S  *  S  E  M  L  C  I  C  D  Y  I  F  S  W  L  E  L  Y  C  Q  V  K  C  F  N  *  F  E  P  S  S  E  L  L  R  D  L  L  M  P  *  L  Q  N  L  P  L  Y  H  Q  F  S  K  S  V  A  Y  L  N  A  L  T  K  L  F  R  L  L  *  I  S  T  V  E  A  L  F  L  A  V  L  K  C  V  S  *  V  L  *  L  I  Y  V  C  L  V  Y  L  C  C  Y  P  F  V  I  F  W  I  Q  *  *  S  W  F  G </second_frame>
            <third_frame>   S  E  V  A  T  V  T  A  A  G  C  G  I  S  A  T  Q  F  R  R  H  R  R  L  C  H  G  G  G  F  I  Y  S  F  V  H  *  K  I  T  D  F  E  F  S  M  I  P  R  W  K  K  H  S  K  E  W  F  L  W  I  R  S  V  F  I  K  *  W :   Y  F  P  C  *  E  S  R  S  Q  S  I  E  D  *  C  S  K  K  L  *  R  C  W  M  E  S  E  D  K  N  L  L  F  V  *  R  K  W  H  Y  A  S  P  *  N  V  *  *  I  V  R  P  G  H  V  E  D  E  L  L  S  Y  I  T  M  I  S  L  R  K  L  M  I  *  W  F  G  R  R  G  K  K  S  L  R  S  N  L  V  E  C  S  N  Q  L  T  T  L  I  W  *  Y  N  Y  S  Q  D  N  A  S  L  *  V  H  N  F  S  L  Y  C  L  S  I  V  L  I  S  L  N  L  F  F  V  E  Q  D  C  F  F  I  Y  S  W  K  A  T  P  C  S  E  V  R  V  K  C  Y  A  F  V  I  I  Y  F  L  G  *  S  C  I  A  K  *  S  V  L  I  D  L  N  L  R  V  S  C  F  V  I  F  L  C  L  S  F  R  T  Y  H  Y  I  I  N  S  R  R  V  W  P  T  *  M  L  S  L  N  Y  S  D  C  C  K  S  L  L  L  R  L  Y  F  W  Q  F  L  N  V  Y  L  K  F  C  N  *  F  M  F  V  *  Y  I  S  V  V  T  P  L  *  S  F  G  F  N  D  E  V  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19408" stop="19342"/>
                    <exon start="17536" stop="17337"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPDGRNIAKNGFCGSDLYSSNDGIFHVKNLEANRLKTSARKSYDVAGWNQKIKTYCSFEGNGTMPLPKMFNRLYDQGMWKTSCFLISQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22516" PGL_stop="30335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22516" e_stop="23078"/>
            <exon e_start="26606" e_stop="26908"/>
            <exon e_start="28302" e_stop="28456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.998"/>
          <exon-intron don_prob="0.826" acc_prob="0.727" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="22516" e_stop="23078" e_length="563"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="23079" i_stop="26605" i_length="3527"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26606" e_stop="26908" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.727">
            <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="28302" e_stop="28456" e_length="155"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22516" stop="23078"/>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577601" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTG : GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG : TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCA</gDNA_template>
            <first_frame> H  P  L  R  Q  N  F  H  K  K  W  C  V  V  Q  N  S  Q  *  P  F  K  K  I  Q  S  F  L  V  Y  F  F  Q  F  F  S  I  C  T  Q  T  C  V  C  V  T  K  I  S  K  L  *  G  G  L  Y  Q  L  *  V  *  I  I  M  K  L  *  G  F  T  *  F  D  C  D  P  F  Q  I  F  D  S  C  Y  P  L  D  L  Y  T  C  K  E  K  Q  T  N  G  F  V  F  S  D  L  L  L  K  K  Q  E  P  V  L  V  D  T  K  I  K  E  K  A  F  K  D  I  W  C  I  S  T  T  H  S  Y  P  F  V  K  T  L  S  F  S  V  L  G  F  C  L  C  F  P  F  F  C  C  *  *  S  L  S  G  R  P  N  Y  W  L  L  L  L  R  M  G  *  V  N  L  A  F  T  Y  K  I  L  S  W :   I  R  A  V  K  R  A  R  R  S  D  L  W  R  I  Y  I  V  V  N  T  *  *  F  I  *  I  P  W  L  P  E  A  V  T  T  R  I  L  V  I  P  A  V  H  I  L  T  M  V  L  H  Q  K  V  L  S  S  K  T  P  P  L  E  K  L  Q  L  L  L  V  G  R  M  E  L  D  L  I  V  L  F  M  S  Y  L  N  A  L  F  V  *  I  Q  C  I  H  Q  F  T  S :   V  Q  T  A  T  R  Y  A  *  S  A  S  Q  K  Y  M  C  V  Q  F  A  A  M  S  L  E  T  *  D  V  *  H  W  K  K  L  L  S  H  *  N  C  R  A  D  T  K  F  M  A  V  </first_frame>
            <second_frame>  I  L  *  D  R  I  S  T  K  N  G  V  L  Y  K  I  H  N  S  L  S  K  K  S  N  L  F  *  Y  I  F  F  N  F  F  L  F  V  H  K  H  V  Y  V  S  Q  K  S  V  S  Y  K  G  G  C  I  N  Y  K  F  K  L  L  *  N  Y  E  D  L  H  D  L  I  V  T  L  F  K  S  L  T  L  V  T  L  *  I  C  I  L  V  K  R  N  K  Q  M  V  L  F  S  Q  I  Y  C  *  K  N  K  S  L  F  W  W  T  R  K  S  R  R  K  L  L  R  I  F  G  A  S  Q  P  P  T  L  T  L  L  L  R  P  F  H  F  L  F  L  V  F  V  F  V  F  L  F  F  V  V  D  E  A  Y  Q  E  D  P  I  I  G  C  F  C  *  E  W  D  E  L  I  W  L  L  R  T  K  S  Y  L   : G  S  G  P  S  R  E  L  E  D  Q  I  C  G  G  Y  I  L  L  S  T  H  S  S  L  Y  R  Y  H  G  S  R  R  Q  *  L  P  G  Y  W  *  F  P  Q  C  I  F  *  L  W  Y  C  T  R  K  C  *  V  Q  K  L  P  L  *  K  S  C  S  C  Y  W  W  E  E  W  S  W  I  *  *  C  C  S  *  A  T  *  M  P  C  L  Y  E  S  N  V  S  T  N  S  P   : V  S  K  R  P  H  V  M  R  E  V  Q  V  K  S  T  C  V  S  N  L  P  P  *  A  W  K  H  K  M  F  S  T  G  K  N  C  *  V  T  R  I  A  V  P  I  P  N  L  W  L  S </second_frame>
            <third_frame>   S  S  K  T  E  F  P  Q  K  M  V  C  C  T  K  F  T  I  A  F  Q  K  N  P  I  F  F  S  I  F  F  S  I  F  F  Y  L  Y  T  N  M  C  M  C  H  K  N  Q  *  A  I  R  G  V  V  S  I  I  S  L  N  Y  Y  E  I  M  R  I  Y  M  I  *  L  *  P  F  S  N  L  *  L  L  L  P  F  R  F  V  Y  L  *  R  E  T  N  K  W  F  C  F  L  R  F  T  V  E  K  T  R  A  C  F  G  G  H  E  N  Q  G  E  S  F  *  G  Y  L  V  H  L  N  H  P  L  L  P  F  C  *  D  P  F  I  F  C  S  W  F  L  S  L  F  S  F  F  L  L  L  M  K  P  I  R  K  T  Q  L  L  V  A  F  V  E  N  G  M  S  *  S  G  F  Y  V  Q  N  L  I  L  :  D  Q  G  R  Q  E  S  *  K  I  R  F  V  E  D  I  Y  C  C  Q  H  I  V  V  Y  I  D  T  M  A  P  G  G  S  N  Y  Q  D  I  G  D  S  R  S  A  Y  S  D  Y  G  I  A  P  E  S  A  E  F  K  N  S  P  F  R  K  A  A  A  V  I  G  G  K  N  G  V  G  S  N  S  A  V  H  E  L  L  E  C  P  V  C  M  N  P  M  Y  P  P  I  H  Q  :  C  P  N  G  H  T  L  C  V  K  C  K  S  K  V  H  V  C  P  I  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  I  A  E  S  L  E  L  P  C  R  Y  Q  I  Y  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26630" stop="26908"/>
                    <exon start="28302" stop="28454"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRFVEDIYCCQHIVVYIDTMAPGGSNYQDIGDSRSAYSDYGIAPESAEFKNSPFRKAAAVIGGKNGVGSNSAVHELLECPVCMNPMYPPIHQCPNGHTLCVKCKSKVHVCPICRHELGNIRCLALEKIAESLELPCRYQIYGC</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22729" stop="22989"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDCDPFQIFDSCYPLDLYTCKEKQTNGFVFSDLLLKKQEPVLVDTKIKEKAFKDIWCISTTHSYPFVKTLSFSVLGFCLCFPFFCC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22846" e_stop="22895"/>
            <exon e_start="23029" e_stop="23060"/>
            <exon e_start="26606" e_stop="26908"/>
            <exon e_start="28302" e_stop="28685"/>
            <exon e_start="29772" e_stop="30335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.449" acc_prob="0.000" e_score="0.860"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.969"/>
          <exon-intron don_prob="0.826" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.860">
            <gDNA_exon_boundary e_start="22846" e_stop="22895" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.449" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22896" i_stop="23028" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="23029" e_stop="23060" e_length="32"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="23061" i_stop="26605" i_length="3545"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26606" e_stop="26908" e_length="303"/>
          </exon>
          <intron i_serial="3" don_prob="0.826" acc_prob="0.727">
            <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28302" e_stop="28685" e_length="384"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="28686" i_stop="29771" i_length="1086"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29772" e_stop="30335" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22846" stop="22895"/>
              <exon start="23029" stop="23060"/>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28685"/>
              <exon start="29772" stop="30335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577526" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTG : TTGAGAATGGGATGAGTTAATCTGGCTTTTAC : GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG : TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG : GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCTGT</gDNA_template>
            <first_frame> P  V  L  V  D  T  K  I  K  E  K  A  F  K  D  I  C :   *  E  W  D  E  L  I  W  L  L   : R  S  G  P  S  R  E  L  E  D  Q  I  C  G  G  Y  I  L  L  S  T  H  S  S  L  Y  R  Y  H  G  S  R  R  Q  *  L  P  G  Y  W  *  F  P  Q  C  I  F  *  L  W  Y  C  T  R  K  C  *  V  Q  K  L  P  L  *  K  S  C  S  C  Y  W  W  E  E  W  S  W  I  *  *  C  C  S  *  A  T  *  M  P  C  L  Y  E  S  N  V  S  T  N  S  P   : V  S  K  R  P  H  V  M  R  E  V  Q  V  K  S  T  C  V  S  N  L  P  P  *  A  W  K  H  K  M  F  S  T  G  K  N  C  *  V  T  R  I  A  V  P  I  P  N  L  W  L  S  R  Y  I  H  L  S  Y  *  A  S  S  *  A  E  L  Q  I  S  T  I  Q  L  P  I  C  R  I  *  M  R  C  Y  R  *  Y  S  V  P  R  C  T  P  K  R  *  S  Q  S  *  Y  A  *  W  L  Y  L  Q  S  S  L  C  Q  I  *  S  S  R  S  *  E  C  Y  M  D  V  D   : G  F  *  L  F  R  S  P  V  L  P  A  L  *  G  F  Q  S  W  I  G  T  G  I  H  G  I  P  S  F  Y  G  *  *  *  *  C  E  K  I  *  L  *  S  *  S  R  W  I  W  Q  K  V  N  M  A  G  S  T  E  E  H  P  *  *  S  *  N  C  P  R  Q  F  R  R  A  D  Y  S  K  E  H  G  T  L  L  L  W  W  *  Q  E  G  A  E  A  K  G  S  W  A  Y  L  A  R  A  I  V  N  *  I  Y  A  S  S  F  I  V  G  M  P  *  K  Y  S  *  L  S  L  N  W  L  V  A  *  F  F  V  N  G  S  I  Q  F  L  V  F  R  I  D  R  I  D  C  S  L  A  Q  L  W  I  M  Y  L  K  L  *  G  I  L  S  F  S  M  T  S  H  M  I  I  Y  L  V  I  S  L  F  L  </first_frame>
            <second_frame>  L  F  W  W  T  R  K  S  R  R  K  L  L  R  I  F   : V  E  N  G  M  S  *  S  G  F  Y  :  D  Q  G  R  Q  E  S  *  K  I  R  F  V  E  D  I  Y  C  C  Q  H  I  V  V  Y  I  D  T  M  A  P  G  G  S  N  Y  Q  D  I  G  D  S  R  S  A  Y  S  D  Y  G  I  A  P  E  S  A  E  F  K  N  S  P  F  R  K  A  A  A  V  I  G  G  K  N  G  V  G  S  N  S  A  V  H  E  L  L  E  C  P  V  C  M  N  P  M  Y  P  P  I  H  Q  :  C  P  N  G  H  T  L  C  V  K  C  K  S  K  V  H  V  C  P  I  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  I  A  E  S  L  E  L  P  C  R  Y  Q  I  Y  G  C  Q  D  I  F  T  Y  H  T  R  L  R  H  E  Q  N  C  R  F  R  P  Y  N  C  P  Y  A  G  S  E  C  A  V  T  G  D  I  Q  Y  L  V  A  H  L  K  D  D  H  K  V  D  M  H  D  G  C  T  F  N  H  R  Y  V  K  S  N  P  Q  E  V  E  N  A  T  W  M  L  T  :  V  F  N  C  F  G  H  Q  F  C  L  H  F  E  A  F  N  L  G  L  A  P  V  Y  M  A  F  L  R  F  M  G  D  D  D  D  A  K  R  F  S  Y  S  L  E  V  G  G  F  G  R  K  L  T  W  Q  G  V  P  R  S  I  R  D  S  H  K  T  V  R  D  S  L  D  G  L  I  I  Q  R  S  M  A  L  F  F  S  G  G  D  R  K  E  L  K  L  K  V  A  G  R  I  W  R  E  P  L  *  T  R  Y  M  H  L  P  S  S  W  G  C  P  E  S  I  V  S  Y  R  *  I  G  W  W  L  N  F  L  *  M  V  L  Y  S  F  W  F  F  G  S  I  V  S  I  V  V  *  L  N  C  G  S  C  I  *  S  C  E  A  F  *  A  F  L  *  P  A  I  *  *  S  I  W  L  L  V  S  F  C </second_frame>
            <third_frame>   C  F  G  G  H  E  N  Q  G  E  S  F  *  G  Y  L  :  L  R  M  G  *  V  N  L  A  F  T :   I  R  A  V  K  R  A  R  R  S  D  L  W  R  I  Y  I  V  V  N  T  *  *  F  I  *  I  P  W  L  P  E  A  V  T  T  R  I  L  V  I  P  A  V  H  I  L  T  M  V  L  H  Q  K  V  L  S  S  K  T  P  P  L  E  K  L  Q  L  L  L  V  G  R  M  E  L  D  L  I  V  L  F  M  S  Y  L  N  A  L  F  V  *  I  Q  C  I  H  Q  F  T  S :   V  Q  T  A  T  R  Y  A  *  S  A  S  Q  K  Y  M  C  V  Q  F  A  A  M  S  L  E  T  *  D  V  *  H  W  K  K  L  L  S  H  *  N  C  R  A  D  T  K  F  M  A  V  K  I  Y  S  L  I  I  L  G  F  V  M  S  R  T  A  D  F  D  H  T  I  A  H  M  Q  D  L  N  A  L  L  P  V  I  F  S  T  S  L  H  T  *  K  M  I  T  K  L  I  C  M  M  A  V  P  S  I  I  V  M  S  N  L  I  L  K  K  L  R  M  L  H  G  C  *  R :   F  L  T  V  S  V  T  S  S  A  C  T  L  R  L  S  I  L  D  W  H  R  Y  T  W  H  S  F  V  L  W  V  M  M  M  M  R  K  D  L  A  I  V  L  K  *  V  D  L  A  E  S  *  H  G  R  E  Y  R  G  A  S  V  I  V  I  K  L  S  E  T  V  *  T  G  *  L  F  K  G  A  W  H  S  S  S  L  V  V  T  G  R  S  *  S  *  R  *  L  G  V  F  G  E  S  H  C  K  L  D  I  C  I  F  L  H  R  G  D  A  L  K  V  *  L  V  I  A  K  L  V  G  G  L  I  F  C  K  W  F  Y  T  V  S  G  F  S  D  R  S  Y  R  L  *  F  S  S  T  V  D  H  V  S  K  V  V  R  H  F  K  L  F  Y  D  Q  P  Y  D  N  L  S  G  Y  *  S  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26630" stop="26908"/>
                    <exon start="28302" stop="28685"/>
                    <exon start="29772" stop="30095"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRFVEDIYCCQHIVVYIDTMAPGGSNYQDIGDSRSAYSDYGIAPESAEFKNSPFRKAAAVIGGKNGVGSNSAVHELLECPVCMNPMYPPIHQCPNGHTLCVKCKSKVHVCPICRHELGNIRCLALEKIAESLELPCRYQIYGCQDIFTYHTRLRHEQNCRFRPYNCPYAGSECAVTGDIQYLVAHLKDDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGHQFCLHFEAFNLGLAPVYMAFLRFMGDDDDAKRFSYSLEVGGFGRKLTWQGVPRSIRDSHKTVRDSLDGLIIQRSMALFFSGGDRKELKLKVAGRIWREPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22554" e_stop="22926"/>
            <exon e_start="26606" e_stop="26908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.605" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22554" e_stop="22926" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.605" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22927" i_stop="26605" i_length="3679"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="26606" e_stop="26908" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22554" stop="22926"/>
              <exon start="26606" stop="26908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTT : GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG</gDNA_template>
            <first_frame> C  T  K  F  T  I  A  F  Q  K  N  P  I  F  F  S  I  F  F  S  I  F  F  Y  L  Y  T  N  M  C  M  C  H  K  N  Q  *  A  I  R  G  V  V  S  I  I  S  L  N  Y  Y  E  I  M  R  I  Y  M  I  *  L  *  P  F  S  N  L  *  L  L  L  P  F  R  F  V  Y  L  *  R  E  T  N  K  W  F  C  F  L  R  F  T  V  E  K  T  R  A  C  F  G  G  H  E  N  Q  G  E  S  F  *  G  Y  L  V  H  L  N  H  P  L  L  P  F   : *  S  G  P  S  R  E  L  E  D  Q  I  C  G  G  Y  I  L  L  S  T  H  S  S  L  Y  R  Y  H  G  S  R  R  Q  *  L  P  G  Y  W  *  F  P  Q  C  I  F  *  L  W  Y  C  T  R  K  C  *  V  Q  K  L  P  L  *  K  S  C  S  C  Y  W  W  E  E  W  S  W  I  *  *  C  C  S  *  A  T  *  M  P  C  L  Y  E  S  N  V  S  T  N  S  P  </first_frame>
            <second_frame>  V  Q  N  S  Q  *  P  F  K  K  I  Q  S  F  L  V  Y  F  F  Q  F  F  S  I  C  T  Q  T  C  V  C  V  T  K  I  S  K  L  *  G  G  L  Y  Q  L  *  V  *  I  I  M  K  L  *  G  F  T  *  F  D  C  D  P  F  Q  I  F  D  S  C  Y  P  L  D  L  Y  T  C  K  E  K  Q  T  N  G  F  V  F  S  D  L  L  L  K  K  Q  E  P  V  L  V  D  T  K  I  K  E  K  A  F  K  D  I  W  C  I  S  T  T  H  S  Y  P  F  :  D  Q  G  R  Q  E  S  *  K  I  R  F  V  E  D  I  Y  C  C  Q  H  I  V  V  Y  I  D  T  M  A  P  G  G  S  N  Y  Q  D  I  G  D  S  R  S  A  Y  S  D  Y  G  I  A  P  E  S  A  E  F  K  N  S  P  F  R  K  A  A  A  V  I  G  G  K  N  G  V  G  S  N  S  A  V  H  E  L  L  E  C  P  V  C  M  N  P  M  Y  P  P  I  H  Q </second_frame>
            <third_frame>   Y  K  I  H  N  S  L  S  K  K  S  N  L  F  *  Y  I  F  F  N  F  F  L  F  V  H  K  H  V  Y  V  S  Q  K  S  V  S  Y  K  G  G  C  I  N  Y  K  F  K  L  L  *  N  Y  E  D  L  H  D  L  I  V  T  L  F  K  S  L  T  L  V  T  L  *  I  C  I  L  V  K  R  N  K  Q  M  V  L  F  S  Q  I  Y  C  *  K  N  K  S  L  F  W  W  T  R  K  S  R  R  K  L  L  R  I  F  G  A  S  Q  P  P  T  L  T  L  L :   I  R  A  V  K  R  A  R  R  S  D  L  W  R  I  Y  I  V  V  N  T  *  *  F  I  *  I  P  W  L  P  E  A  V  T  T  R  I  L  V  I  P  A  V  H  I  L  T  M  V  L  H  Q  K  V  L  S  S  K  T  P  P  L  E  K  L  Q  L  L  L  V  G  R  M  E  L  D  L  I  V  L  F  M  S  Y  L  N  A  L  F  V  *  I  Q  C  I  H  Q  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26630" stop="26908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRFVEDIYCCQHIVVYIDTMAPGGSNYQDIGDSRSAYSDYGIAPESAEFKNSPFRKAAAVIGGKNGVGSNSAVHELLECPVCMNPMYPPIHQ</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22729" stop="22926"/>
                    <exon start="26606" stop="26629"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDCDPFQIFDSCYPLDLYTCKEKQTNGFVFSDLLLKKQEPVLVDTKIKEKAFKDIWCISTTHSYPFDQGRQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26685" stop="26882"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPWLPEAVTTRILVIPAVHILTMVLHQKVLSSKTPPLEKLQLLLVGRMELDLIVLFMSYLNALFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41278" PGL_stop="42437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41278" e_stop="41314"/>
            <exon e_start="41974" e_stop="42056"/>
            <exon e_start="42311" e_stop="42437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.919"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.952"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="41278" e_stop="41314" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="41974" e_stop="42056" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="42311" e_stop="42437" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41278" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG : GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT : GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTG</gDNA_template>
            <first_frame> S  N  S  P  Y  T  L  R  R  L  L  E   : G  *  L  I  N  M  S  C  G  E  V  A  C  T  Y  A  A  L  L  L  H  D  E  D  I  P  I  T  :  A  E  K  I  S  T  L  V  K  A  A  N  V  T  V  E  P  Y  W  P  L  L  F  A  K  L  A  E  K  R  N  L  G  D  L  I  M  N  V  G  A  G  </first_frame>
            <second_frame>  R  T  R  R  T  L  F  A  V  F  S  K  :  V  S  *  S  I  C  R  A  E  K  L  L  A  L  M  L  P  C  S  S  M  M  R  T  F  Q  S  L :   Q  R  K  F  Q  L  *  L  K  Q  L  M  *  Q  W  N  H  T  G  L  S  C  L  L  S  L  L  R  R  E  T  L  V  I  S  S  *  M  S  V  L  V </second_frame>
            <third_frame>   E  L  A  V  H  S  S  P  S  S  R  R :   L  V  D  Q  Y  V  V  R  R  S  C  L  H  L  C  C  L  A  P  P  *  *  G  H  S  N  H   : C  R  E  N  F  N  F  S  *  S  S  *  C  D  S  G  T  I  L  A  S  P  V  C  *  A  C  *  E  E  K  P  W  *  S  H  H  E  C  R  C  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41979" stop="42056"/>
                    <exon start="42311" stop="42436"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LINMSCGEVACTYAALLLHDEDIPITAEKISTLVKAANVTVEPYWPLLFAKLAEKRNLGDLIMNVGAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="47464" PGL_stop="50916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47464" e_stop="47683"/>
            <exon e_start="50000" e_stop="50169"/>
            <exon e_start="50599" e_stop="50797"/>
            <exon e_start="50892" e_stop="50916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="0.986"/>
          <exon-intron don_prob="0.837" acc_prob="0.991" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.818" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="47464" e_stop="47683" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="47684" i_stop="49999" i_length="2316"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="50000" e_stop="50169" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.837" acc_prob="0.991">
            <gDNA_intron_boundary i_start="50170" i_stop="50598" i_length="429"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="50599" e_stop="50797" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.818">
            <gDNA_intron_boundary i_start="50798" i_stop="50891" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50892" e_stop="50916" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47464" stop="47683"/>
              <exon start="50000" stop="50169"/>
              <exon start="50599" stop="50797"/>
              <exon start="50892" stop="50916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAAAAAATATGGAGGGAGAAGAAATCAAGAATGAAGTGAAAACTCCATTGTTGGATGGGTGGAAGCTTAGTTATAGTGGGCGGCGAAACTCAGTTACAACTTTAAGGGGTGATTTTTTAGCAAGATTGCCTGAAAAAGTGAAGTCTTGTGTTAATGTTGATGTTGAATCTTCATCATCAAACATTGATAATACCAAGAGTTCTAGCTTGTCTAAAG : GAGAAAAGGATTACTATGAAAAACAGTTTGAGACCTTGAAGTCATTTGAAGAAGTTGATTCCATTGTGGCATCTAGTTTCATTGATGATGAGGATCTTGACGAACAATCTCAAGATGAGAAGGCAATGCAGATCTCCAATTATGCAAACGTTTTATTACTAGCTCTTAAG : ATCTATGCCACAGTGACAAGTGGTTCCCTAGCTATCGCTGCATCTACGTTGGATTCGTTACTTGATCTCATGGCTGGTGGTATACTCTGGCTCAGTCATCTGTCAATGAAAAATATCAACATCTACAAATATCCTATAGGGAAGTTGCGAGTTCAGCCAGTAGGGATCATTATCTTTGCTGCTGTTATGGCTACACTTG : GCTTTCAGGTGTTTATCCAGGCTGT</gDNA_template>
            <first_frame> E  K  K  N  M  E  G  E  E  I  K  N  E  V  K  T  P  L  L  D  G  W  K  L  S  Y  S  G  R  R  N  S  V  T  T  L  R  G  D  F  L  A  R  L  P  E  K  V  K  S  C  V  N  V  D  V  E  S  S  S  S  N  I  D  N  T  K  S  S  S  L  S  K   : G  E  K  D  Y  Y  E  K  Q  F  E  T  L  K  S  F  E  E  V  D  S  I  V  A  S  S  F  I  D  D  E  D  L  D  E  Q  S  Q  D  E  K  A  M  Q  I  S  N  Y  A  N  V  L  L  L  A  L  K  :  I  Y  A  T  V  T  S  G  S  L  A  I  A  A  S  T  L  D  S  L  L  D  L  M  A  G  G  I  L  W  L  S  H  L  S  M  K  N  I  N  I  Y  K  Y  P  I  G  K  L  R  V  Q  P  V  G  I  I  I  F  A  A  V  M  A  T  L   : G  F  Q  V  F  I  Q  A   </first_frame>
            <second_frame>  K  K  K  I  W  R  E  K  K  S  R  M  K  *  K  L  H  C  W  M  G  G  S  L  V  I  V  G  G  E  T  Q  L  Q  L  *  G  V  I  F  *  Q  D  C  L  K  K  *  S  L  V  L  M  L  M  L  N  L  H  H  Q  T  L  I  I  P  R  V  L  A  C  L  K  :  E  K  R  I  T  M  K  N  S  L  R  P  *  S  H  L  K  K  L  I  P  L  W  H  L  V  S  L  M  M  R  I  L  T  N  N  L  K  M  R  R  Q  C  R  S  P  I  M  Q  T  F  Y  Y  *  L  L  R :   S  M  P  Q  *  Q  V  V  P  *  L  S  L  H  L  R  W  I  R  Y  L  I  S  W  L  V  V  Y  S  G  S  V  I  C  Q  *  K  I  S  T  S  T  N  I  L  *  G  S  C  E  F  S  Q  *  G  S  L  S  L  L  L  L  W  L  H  L  :  A  F  R  C  L  S  R  L  </second_frame>
            <third_frame>   K  K  K  Y  G  G  R  R  N  Q  E  *  S  E  N  S  I  V  G  W  V  E  A  *  L  *  W  A  A  K  L  S  Y  N  F  K  G  *  F  F  S  K  I  A  *  K  S  E  V  L  C  *  C  *  C  *  I  F  I  I  K  H  *  *  Y  Q  E  F  *  L  V  *  R :   R  K  G  L  L  *  K  T  V  *  D  L  E  V  I  *  R  S  *  F  H  C  G  I  *  F  H  *  *  *  G  S  *  R  T  I  S  R  *  E  G  N  A  D  L  Q  L  C  K  R  F  I  T  S  S  *   : D  L  C  H  S  D  K  W  F  P  S  Y  R  C  I  Y  V  G  F  V  T  *  S  H  G  W  W  Y  T  L  A  Q  S  S  V  N  E  K  Y  Q  H  L  Q  I  S  Y  R  E  V  A  S  S  A  S  R  D  H  Y  L  C  C  C  Y  G  Y  T  W :   L  S  G  V  Y  P  G  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47464" stop="47683"/>
                    <exon start="50000" stop="50169"/>
                    <exon start="50599" stop="50797"/>
                    <exon start="50892" stop="50914"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKNMEGEEIKNEVKTPLLDGWKLSYSGRRNSVTTLRGDFLARLPEKVKSCVNVDVESSSSNIDNTKSSSLSKGEKDYYEKQFETLKSFEEVDSIVASSFIDDEDLDEQSQDEKAMQISNYANVLLLALKIYATVTSGSLAIAASTLDSLLDLMAGGILWLSHLSMKNINIYKYPIGKLRVQPVGIIIFAAVMATLGFQVFIQA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="55715" PGL_stop="58078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55715" e_stop="56047"/>
            <exon e_start="56737" e_stop="56856"/>
            <exon e_start="56951" e_stop="57185"/>
            <exon e_start="57994" e_stop="58078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.960" e_score="0.994"/>
          <exon-intron don_prob="0.571" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="55715" e_stop="56047" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.960">
            <gDNA_intron_boundary i_start="56048" i_stop="56736" i_length="689"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56737" e_stop="56856" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.571" acc_prob="0.952">
            <gDNA_intron_boundary i_start="56857" i_stop="56950" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="56951" e_stop="57185" e_length="235"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57186" i_stop="57993" i_length="808"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="57994" e_stop="58078" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55715" stop="56047"/>
              <exon start="56737" stop="56856"/>
              <exon start="56951" stop="57185"/>
              <exon start="57994" stop="58078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586269" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGGAGTTCACCGGATCTTCACCGTCCGATCGGAAATCATTACCGGCGAATCCATTTCGCAGTGAAAAATCTGCCGGAGTTGTAGCAATTCCGGTGATGGATCAATGGAGAACTAAAACACCGGAGAAACCGATCCAAAATCGCATGGCGCGATCACTGCAGTCCCTGAAAGACGTCAGAGAAGCTTCTCAGAAGCTCCGGAAACACGATCTGATCCAACGCGAGGTTTCTGATCCGTTATTAAGCTACGGTGAAGTGAAATCTCCATTGGTAGCTGGATCGCCGGTTTCTGAACGGAAGAAGCATGTGAACTCGGTAAAGCTGCCGGAAAA : GTATGAAATGTTGGAAAAATTCTTCAATAGCATGGATAGTTCAATTCGGCTGCTACATTTGAAGGGATCTGCAACAACTTTCACTAATATTAGTGCGAAAGTAGAGAGTTTGATCGATAA : GAGGTTTACTTGCAGTCATTTAGCTCAGCTGAAGTTTATTTTACCTGAAGCCATTGAGATAAAGAAGATTCTCAAGCACGATGAGCGCAGTTGGTGCATGAAGCCGGATCTTTATATCACTTTAAATGCAAATGCAGTTGATAATAGTGAGAAGTGGAAATCTAACAGTAGCAGTGTTCTATTGAGGAAAATATTCCGCTCTCGGCTCTTGGATTTCTTCAAGTCACACCCTGAG : GGTGATGACATTCCTGAGGGAATGCTGCCAGGCCCATTCACTCAGTCTAAGCAAGTAGTGACCAACTCATGTAGACCTTCTGGCT</gDNA_template>
            <first_frame> N  G  V  H  R  I  F  T  V  R  S  E  I  I  T  G  E  S  I  S  Q  *  K  I  C  R  S  C  S  N  S  G  D  G  S  M  E  N  *  N  T  G  E  T  D  P  K  S  H  G  A  I  T  A  V  P  E  R  R  Q  R  S  F  S  E  A  P  E  T  R  S  D  P  T  R  G  F  *  S  V  I  K  L  R  *  S  E  I  S  I  G  S  W  I  A  G  F  *  T  E  E  A  C  E  L  G  K  A  A  G  K  :  V  *  N  V  G  K  I  L  Q  *  H  G  *  F  N  S  A  A  T  F  E  G  I  C  N  N  F  H  *  Y  *  C  E  S  R  E  F  D  R  *  :  E  V  Y  L  Q  S  F  S  S  A  E  V  Y  F  T  *  S  H  *  D  K  E  D  S  Q  A  R  *  A  Q  L  V  H  E  A  G  S  L  Y  H  F  K  C  K  C  S  *  *  *  *  E  V  E  I  *  Q  *  Q  C  S  I  E  E  N  I  P  L  S  A  L  G  F  L  Q  V  T  P  *   : G  *  *  H  S  *  G  N  A  A  R  P  I  H  S  V  *  A  S  S  D  Q  L  M  *  T  F  W   </first_frame>
            <second_frame>  M  E  F  T  G  S  S  P  S  D  R  K  S  L  P  A  N  P  F  R  S  E  K  S  A  G  V  V  A  I  P  V  M  D  Q  W  R  T  K  T  P  E  K  P  I  Q  N  R  M  A  R  S  L  Q  S  L  K  D  V  R  E  A  S  Q  K  L  R  K  H  D  L  I  Q  R  E  V  S  D  P  L  L  S  Y  G  E  V  K  S  P  L  V  A  G  S  P  V  S  E  R  K  K  H  V  N  S  V  K  L  P  E  K :   Y  E  M  L  E  K  F  F  N  S  M  D  S  S  I  R  L  L  H  L  K  G  S  A  T  T  F  T  N  I  S  A  K  V  E  S  L  I  D  K :   R  F  T  C  S  H  L  A  Q  L  K  F  I  L  P  E  A  I  E  I  K  K  I  L  K  H  D  E  R  S  W  C  M  K  P  D  L  Y  I  T  L  N  A  N  A  V  D  N  S  E  K  W  K  S  N  S  S  S  V  L  L  R  K  I  F  R  S  R  L  L  D  F  F  K  S  H  P  E  :  G  D  D  I  P  E  G  M  L  P  G  P  F  T  Q  S  K  Q  V  V  T  N  S  C  R  P  S  G  </second_frame>
            <third_frame>   W  S  S  P  D  L  H  R  P  I  G  N  H  Y  R  R  I  H  F  A  V  K  N  L  P  E  L  *  Q  F  R  *  W  I  N  G  E  L  K  H  R  R  N  R  S  K  I  A  W  R  D  H  C  S  P  *  K  T  S  E  K  L  L  R  S  S  G  N  T  I  *  S  N  A  R  F  L  I  R  Y  *  A  T  V  K  *  N  L  H  W  *  L  D  R  R  F  L  N  G  R  S  M  *  T  R  *  S  C  R  K   : S  M  K  C  W  K  N  S  S  I  A  W  I  V  Q  F  G  C  Y  I  *  R  D  L  Q  Q  L  S  L  I  L  V  R  K  *  R  V  *  S  I   : R  G  L  L  A  V  I  *  L  S  *  S  L  F  Y  L  K  P  L  R  *  R  R  F  S  S  T  M  S  A  V  G  A  *  S  R  I  F  I  S  L  *  M  Q  M  Q  L  I  I  V  R  S  G  N  L  T  V  A  V  F  Y  *  G  K  Y  S  A  L  G  S  W  I  S  S  S  H  T  L  R :   V  M  T  F  L  R  E  C  C  Q  A  H  S  L  S  L  S  K  *  *  P  T  H  V  D  L  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55716" stop="56047"/>
                    <exon start="56737" stop="56856"/>
                    <exon start="56951" stop="57185"/>
                    <exon start="57994" stop="58077"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEFTGSSPSDRKSLPANPFRSEKSAGVVAIPVMDQWRTKTPEKPIQNRMARSLQSLKDVREASQKLRKHDLIQREVSDPLLSYGEVKSPLVAGSPVSERKKHVNSVKLPEKYEMLEKFFNSMDSSIRLLHLKGSATTFTNISAKVESLIDKRFTCSHLAQLKFILPEAIEIKKILKHDERSWCMKPDLYITLNANAVDNSEKWKSNSSSVLLRKIFRSRLLDFFKSHPEGDDIPEGMLPGPFTQSKQVVTNSCRPSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="58225" PGL_stop="59655"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58225" e_stop="58662"/>
            <exon e_start="58816" e_stop="59017"/>
            <exon e_start="59115" e_stop="59205"/>
            <exon e_start="59556" e_stop="59655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="0.954"/>
          <exon-intron don_prob="0.691" acc_prob="0.995" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="58225" e_stop="58662" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="58663" i_stop="58815" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="58816" e_stop="59017" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.691" acc_prob="0.995">
            <gDNA_intron_boundary i_start="59018" i_stop="59114" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="59115" e_stop="59205" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59206" i_stop="59555" i_length="350"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59556" e_stop="59655" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58225" stop="58662"/>
              <exon start="58816" stop="59017"/>
              <exon start="59115" stop="59205"/>
              <exon start="59556" stop="59655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGGGCTCGTTTCTCCAGCTTCAATACCCCTTAATGTCCCAAGTTCCACCAAGAAGAAAACAGTAGCATGTTCTGATGCTCCTAAGTTATCTCTAAAACAAACTAGCATCATGAAATGCTCAGCAGGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTCCAGCAACCCCTATGCTCGAACCTCCTAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCAATAAAACTAGCTAGACGCCCGTCAACTAGAAGGTCGTTGCTCTTCGGTACTCCTGTGAAGAGTGCAAATGCTGGTGATAAAGTCTGCGAGAATGGAAGGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGAGAATCTTCTGCAATCG : ATAGGAGAAAAGGAGAGTGAAGCACTAGCGGAGCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCAAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGAAAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAA : GTGAAGTTGAACAGCAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAAACCAGCATCTAATGGAACTCTTCTCTTACT : TGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACAAGAAACTAGTGATTTGTACTTTATTTTACCAAAT</gDNA_template>
            <first_frame> L  G  L  V  S  P  A  S  I  P  L  N  V  P  S  S  T  K  K  K  T  V  A  C  S  D  A  P  K  L  S  L  K  Q  T  S  I  M  K  C  S  A  G  G  V  V  L  A  S  S  P  C  H  P  P  A  L  P  M  I  E  A  K  K  G  E  D  G  S  T  S  A  P  A  T  P  M  L  E  P  P  K  R  C  Y  M  S  P  D  D  P  A  E  S  P  I  K  L  A  R  R  P  S  T  R  R  S  L  L  F  G  T  P  V  K  S  A  N  A  G  D  K  V  C  E  N  G  R  F  S  T  D  N  D  I  L  D  I  L  P  E  N  L  L  Q  S  :  I  G  E  K  E  S  E  A  L  A  E  Q  N  P  A  I  S  Q  A  K  R  R  K  Q  M  I  A  C  L  P  H  L  F  D  M  I  Y  F  L  F  Q  S  I  K  R  S  V  M  T  K  E  E  L  M  H  R  V  I  S  S  H  L  E  I  T  D  K   : S  E  V  E  Q  Q  L  L  L  L  Q  E  L  A  P  E  W  I  Y  E  K  P  A  S  N  G  T  L  L  L  L :   V  S  K  I  S  N  P  D  T  I  R  S  R  L  A  E  A  N  *  E  K  Q  E  T  S  D  L  Y  F  I  L  P  N </first_frame>
            <second_frame>  S  G  S  F  L  Q  L  Q  Y  P  L  M  S  Q  V  P  P  R  R  K  Q  *  H  V  L  M  L  L  S  Y  L  *  N  K  L  A  S  *  N  A  Q  Q  E  G  L  F  W  L  V  H  H  A  I  H  L  L  F  L  *  L  K  P  K  R  E  K  M  V  L  H  P  L  Q  Q  P  L  C  S  N  L  L  R  D  V  T  *  V  Q  M  I  Q  L  N  H  Q  *  N  *  L  D  A  R  Q  L  E  G  R  C  S  S  V  L  L  *  R  V  Q  M  L  V  I  K  S  A  R  M  E  G  F  Q  L  I  M  I  F  L  T  F  F  L  R  I  F  C  N  R :   *  E  K  R  R  V  K  H  *  R  S  K  I  Q  P  Y  P  K  Q  K  G  A  N  R  *  L  L  V  C  L  T  S  L  T  *  F  I  S  C  F  N  L  L  N  V  L  S  *  R  K  R  S  S  C  T  E  *  F  Q  A  I  *  R  *  R  T  K  :  V  K  L  N  S  N  S  Y  Y  C  K  N  W  L  L  N  G  F  M  R  N  Q  H  L  M  E  L  F  S  Y   : L  L  A  R  Y  Q  I  L  T  Q  F  V  Q  D  *  Q  K  P  I  E  R  N  K  K  L  V  I  C  T  L  F  Y  Q   </second_frame>
            <third_frame>   R  A  R  F  S  S  F  N  T  P  *  C  P  K  F  H  Q  E  E  N  S  S  M  F  *  C  S  *  V  I  S  K  T  N  *  H  H  E  M  L  S  R  R  G  C  F  G  *  F  T  M  P  S  T  C  S  S  Y  D  *  S  Q  K  G  R  R  W  F  Y  I  R  S  S  N  P  Y  A  R  T  S  *  E  M  L  H  E  S  R  *  S  S  *  I  T  N  K  T  S  *  T  P  V  N  *  K  V  V  A  L  R  Y  S  C  E  E  C  K  C  W  *  *  S  L  R  E  W  K  V  F  N  *  *  *  Y  S  *  H  S  S  *  E  S  S  A  I   : D  R  R  K  G  E  *  S  T  S  G  A  K  S  S  H  I  P  S  K  K  A  Q  T  D  D  C  L  F  A  S  P  L  *  H  D  L  F  P  V  S  I  Y  *  T  F  C  H  D  E  R  G  A  H  A  Q  S  N  F  K  P  F  R  D  N  G  Q  K :   *  S  *  T  A  T  P  I  T  A  R  I  G  S  *  M  D  L  *  E  T  S  I  *  W  N  S  S  L  T  :  C  *  Q  D  I  K  S  *  H  N  S  F  K  T  S  R  S  Q  L  R  E  T  R  N  *  *  F  V  L  Y  F  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58225" stop="58662"/>
                    <exon start="58816" stop="59017"/>
                    <exon start="59115" stop="59205"/>
                    <exon start="59556" stop="59613"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGLVSPASIPLNVPSSTKKKTVACSDAPKLSLKQTSIMKCSAGGVVLASSPCHPPALPMIEAKKGEDGSTSAPATPMLEPPKRCYMSPDDPAESPIKLARRPSTRRSLLFGTPVKSANAGDKVCENGRFSTDNDILDILPENLLQSIGEKESEALAEQNPAISQAKRRKQMIACLPHLFDMIYFLFQSIKRSVMTKEELMHRVISSHLEITDKSEVEQQLLLLQELAPEWIYEKPASNGTLLLLVSKISNPDTIRSRLAEAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="64084" PGL_stop="59844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64084" e_stop="63986"/>
            <exon e_start="62829" e_stop="62726"/>
            <exon e_start="62110" e_stop="61945"/>
            <exon e_start="60853" e_stop="60761"/>
            <exon e_start="60472" e_stop="60341"/>
            <exon e_start="60243" e_stop="59844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.441" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.954" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64084" e_stop="63986" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.860">
            <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62829" e_stop="62726" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.441" acc_prob="0.952">
            <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62110" e_stop="61945" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60853" e_stop="60761" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60472" e_stop="60341" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.954">
            <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60243" e_stop="59844" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64084" stop="63986"/>
              <exon start="62829" stop="62726"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="59844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT : TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG : AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT : GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG : GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG : GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTT</gDNA_template>
            <first_frame> R  K  K  R  E  R  W  L  P  T  S  H  F  L  L  L  Q  L  Y  G  V  H  T  *  T  P  N  L  P  L  *  V  S  :  *  I  *  R  R  G  *  G  L  M  *  T  A  A  Q  K  M  R  V  V  L  L  H  L  P  S  I  Y  G  N  M  *  R  K  R :   D  L  K  H  Q  S  H  G  D  G  V  *  P  A  Y  A  Q  L  E  L  *  *  L  L  L  E  I  Q  F  L  N  Q  E  Q  L  P  *  M  E  M  K  V  L  A  V  G  I  V  G  V  V  A  L  *  F  :  V  I  C  V  V  V  Q  E  N  G  K  L  *  T  E  N  E  L  K  T  F  M  S  S  L  S  A  P  I  V  T  :  D  E  G  N  *  Y  V  L  Y  V  *  E  L  V  Y  L  I  I  K  V  F  L  G  G  Q  T  Q  G  S  Y  L  T  R  C  I  M  D  D  C  C  Q  T  H  K  :  V  E  S  C  T  T  P  E  G  Q  *  E  E  T  Q  S  N  Y  G  C  N  N  Y  C  V  V  E  C  T  C  *  I  S  R  *  T  L  V  L  S  L  I  S  L  D  T  G  V  V  V  F  P  D  Y  H  R  P  L  H  H  S  G  K  K  W  E  V  V  S  A  T  *  *  S  *  H  I  N  Y  F  G  I  L  *  E  K  S  N  N  L  V  F  N  L  H  I  V  F  I  S  H  N  N  R  E  *  K  K  R  K  Q  T  V  L  Y  F  G  L  Y  L  E  N  C  Y  L  K  F  V  P  S  I  I  F  </first_frame>
            <second_frame>  E  K  R  E  R  D  G  F  P  P  L  I  F  Y  S  F  S  S  M  G  F  I  L  K  P  Q  I  F  L  F  K  S  V :   E  Y  E  E  E  G  R  V  S  C  E  L  Q  L  R  R  *  E  L  Y  F  C  I  F  R  A  F  T  G  T  C  R  G  K   : E  I  S  N  I  S  L  T  E  M  V  S  D  L  P  M  L  N  W  S  S  D  N  C  F  W  K  S  N  F  *  T  K  S  N  C  L  R  W  K  *  K  S  W  L  S  E  L  W  G  *  W  R  Y  N  L :   *  Y  V  W  W  Y  R  K  M  E  S  S  K  Q  K  T  S  *  R  R  L  *  V  H  *  V  P  Q  L  L  R :   T  R  E  T  S  M  S  C  M  F  R  N  W  F  T  *  *  *  R  S  S  *  A  A  R  R  K  E  V  T  *  Q  D  V  *  W  T  T  V  A  K  L  I  R :   L  K  A  V  L  H  Q  K  D  N  E  K  R  L  K  V  T  M  D  V  T  T  I  V  L  L  S  V  P  V  K  S  L  D  E  L  S  F  S  P  *  S  L  L  I  P  G  *  *  Y  S  R  T  I  I  D  P  S  T  I  L  E  R  N  G  K  *  Y  L  P  H  D  R  V  S  I  S  I  I  S  E  Y  C  E  R  R  A  I  I  W  C  S  I  C  I  L  S  S  Y  L  I  T  I  E  N  K  R  R  E  N  R  L  F  C  T  L  D  C  I  W  K  I  V  T  *  S  L  Y  H  L  L  F  F </second_frame>
            <third_frame>   K  K  E  R  E  M  A  S  H  L  S  F  S  T  P  S  A  L  W  G  S  Y  L  N  P  K  S  S  S  L  S  Q   : L  N  M  K  K  R  V  G  S  H  V  N  C  S  S  E  D  E  S  C  T  S  A  S  S  E  H  L  R  E  H  V  E  E  K  :  R  S  Q  T  S  V  S  R  R  W  C  L  T  C  L  C  S  T  G  A  L  I  T  A  S  G  N  P  I  S  E  P  R  A  I  A  L  D  G  N  E  S  P  G  C  R  N  C  G  G  S  G  A  I  I   : C  D  M  C  G  G  T  G  K  W  K  A  L  N  R  K  R  A  K  D  V  Y  E  F  T  E  C  P  N  C  Y   : G  R  G  K  L  V  C  P  V  C  L  G  T  G  L  P  N  N  K  G  L  L  R  R  P  D  A  R  K  L  L  D  K  M  Y  N  G  R  L  L  P  N  S  *   : G  *  K  L  Y  Y  T  R  R  T  M  R  R  D  S  K  *  L  W  M  *  Q  L  L  C  C  *  V  Y  L  L  N  L  S  M  N  S  R  S  L  P  D  L  S  *  Y  R  G  S  S  I  P  G  L  S  S  T  P  P  P  F  W  K  E  M  G  S  S  I  C  H  M  I  E  L  A  Y  Q  L  F  R  N  I  V  R  E  E  Q  *  F  G  V  Q  F  A  Y  C  L  H  I  S  *  Q  *  R  I  K  E  E  K  T  D  C  F  V  L  W  I  V  S  G  K  L  L  L  K  V  C  T  I  Y  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64082" stop="63986"/>
                    <exon start="62829" stop="62726"/>
                    <exon start="62110" stop="61945"/>
                    <exon start="60853" stop="60761"/>
                    <exon start="60472" stop="60342"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKEREMASHLSFSTPSALWGSYLNPKSSSLSQLNMKKRVGSHVNCSSEDESCTSASSEHLREHVEEKRSQTSVSRRWCLTCLCSTGALITASGNPISEPRAIALDGNESPGCRNCGGSGAIICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="73527" PGL_stop="65201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73527" e_stop="72896"/>
            <exon e_start="71787" e_stop="71659"/>
            <exon e_start="71492" e_stop="71419"/>
            <exon e_start="71329" e_stop="71260"/>
            <exon e_start="70233" e_stop="70178"/>
            <exon e_start="69733" e_stop="69662"/>
            <exon e_start="69533" e_stop="69439"/>
            <exon e_start="69361" e_stop="69295"/>
            <exon e_start="69218" e_stop="69089"/>
            <exon e_start="68981" e_stop="68763"/>
            <exon e_start="68678" e_stop="68542"/>
            <exon e_start="67899" e_stop="67725"/>
            <exon e_start="67636" e_stop="67546"/>
            <exon e_start="66654" e_stop="66497"/>
            <exon e_start="65948" e_stop="65760"/>
            <exon e_start="65565" e_stop="65201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.511" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="73527" e_stop="72896" e_length="632"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72895" i_stop="71788" i_length="1108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71787" e_stop="71659" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71658" i_stop="71493" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71492" e_stop="71419" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.964">
            <gDNA_intron_boundary i_start="71418" i_stop="71330" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71329" e_stop="71260" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.511" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71259" i_stop="70234" i_length="1026"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70233" e_stop="70178" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.960">
            <gDNA_intron_boundary i_start="70177" i_stop="69734" i_length="444"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69733" e_stop="69662" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.938" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69661" i_stop="69534" i_length="128"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69533" e_stop="69439" e_length="95"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69438" i_stop="69362" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69361" e_stop="69295" e_length="67"/>
          </exon>
          <intron i_serial="8" don_prob="0.895" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69294" i_stop="69219" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69218" e_stop="69089" e_length="130"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="69088" i_stop="68982" i_length="107"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68981" e_stop="68763" e_length="219"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="68762" i_stop="68679" i_length="84"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="68678" e_stop="68542" e_length="137"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68541" i_stop="67900" i_length="642"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="67899" e_stop="67725" e_length="175"/>
          </exon>
          <intron i_serial="12" don_prob="0.957" acc_prob="0.984">
            <gDNA_intron_boundary i_start="67724" i_stop="67637" i_length="88"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="67636" e_stop="67546" e_length="91"/>
          </exon>
          <intron i_serial="13" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67545" i_stop="66655" i_length="891"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="66654" e_stop="66497" e_length="158"/>
          </exon>
          <intron i_serial="14" don_prob="0.993" acc_prob="0.922">
            <gDNA_intron_boundary i_start="66496" i_stop="65949" i_length="548"/>
          </intron>
          <exon e_serial="15" e_score="0.995">
            <gDNA_exon_boundary e_start="65948" e_stop="65760" e_length="189"/>
          </exon>
          <intron i_serial="15" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65759" i_stop="65566" i_length="194"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="65565" e_stop="65201" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73527" stop="72896"/>
              <exon start="71787" stop="71663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71687" stop="71659"/>
              <exon start="71492" stop="71419"/>
              <exon start="71329" stop="71260"/>
              <exon start="70233" stop="70178"/>
              <exon start="69733" stop="69662"/>
              <exon start="69533" stop="69439"/>
              <exon start="69361" stop="69295"/>
              <exon start="69218" stop="69089"/>
              <exon start="68981" stop="68763"/>
              <exon start="68678" stop="68542"/>
              <exon start="67899" stop="67725"/>
              <exon start="67636" stop="67546"/>
              <exon start="66654" stop="66497"/>
              <exon start="65948" stop="65760"/>
              <exon start="65565" stop="65232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65888" stop="65760"/>
              <exon start="65565" stop="65201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590934" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACCCACCTCTCTCTCTCCTCCCCCACTCTCTCTCTAAAAGTAGTGCTTTTTCATCGACATTCACGCGGATTACAGATCGTTTACAGTATTTGAACAAACCCTAGCATCAAAAGTTTGTTTTTTTTTCTTCCAGTTTTTGAATTTGGTTTCAGAAATTCAATCGAGTTTGAGTTTGTTGTAGAAACGGATTTGGGGTTGTTTTTGTATGTTTAGGGTTTTGATTATGATGATGAAAGTATAAGTGATGTGTTGCAATCGGAATCGGGTTGTTGTTTTTGTTCAATTTTATATGGGTAAAAAAGAATGCCGGAGTTGCGGAGTGGGGTATGTCGGCGCCGTGCTCCTCCTCCAGTAGTTGAAACAAAACCCGAAACGAAGAAAAGGGTTGGTGGCGGTGGTGTTGGTGGTCGGAGTTATATAAAGACTCGTGCTGCTAAGGCTAAGGCAGCGGAAGCAGAAGCAAAGCTTGTGGAAGTAGAGGAAGAGGAAGTGAAGGAGAACGAAAACGAGAGAGTAGAGGGAGAAGAAGTTGAAGAAGAGCATAAGATGGGTGATGAGAGTGGTGGTTTGAGTGCTAATAATAAAGTGACTGCACAGGAAGATGAAAGTACTTCTCTTTTTCCTGATCAG : GTGCAAGTAGGAGGATCTCCAGTTTATAAGGTTGAAAGGAAGCTAGGTAAAGGTGGTTTTGGACAGGTGTTTTTGGGTCGCCGTCTTACCGGTGGAAATGAACGTGCTAGTGGTCCCTTGGCTTTGGAG : GTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAA : TACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATG : GTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATC : AATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGG : TTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGG : CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAG : AGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAG : GGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGCTATAAGGCCGATCAACACAGATGGTGCTCAAAAG : GCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAG : GTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAG : GAGTGGATTATGGAGCAATGGGAGAAAAACTATTATATTAGTTCTCTTGCTGGTGGCATAAATGGAGCCTCTTTAGTAGTAATGTCAAAAG : GCACACAGTTCACTCAACAGTCTTATAAAGTCAGTGAGTCATTTCCCTTCAAGTGGATAAGCAAGAAATGGAAAGAAGGGTTCCATGTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAG : GTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAG : GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAAATTTCTGGGGAAAGTTTTAATGTTATCTTTACCTATCGATT</gDNA_template>
            <first_frame> I  P  T  S  L  S  P  P  P  L  S  L  *  K  *  C  F  F  I  D  I  H  A  D  Y  R  S  F  T  V  F  E  Q  T  L  A  S  K  V  C  F  F  F  F  Q  F  L  N  L  V  S  E  I  Q  S  S  L  S  L  L  *  K  R  I  W  G  C  F  C  M  F  R  V  L  I  M  M  M  K  V  *  V  M  C  C  N  R  N  R  V  V  V  F  V  Q  F  Y  M  G  K  K  E  C  R  S  C  G  V  G  Y  V  G  A  V  L  L  L  Q  *  L  K  Q  N  P  K  R  R  K  G  L  V  A  V  V  L  V  V  G  V  I  *  R  L  V  L  L  R  L  R  Q  R  K  Q  K  Q  S  L  W  K  *  R  K  R  K  *  R  R  T  K  T  R  E  *  R  E  K  K  L  K  K  S  I  R  W  V  M  R  V  V  V  *  V  L  I  I  K  *  L  H  R  K  M  K  V  L  L  F  F  L  I  R :   C  K  *  E  D  L  Q  F  I  R  L  K  G  S  *  V  K  V  V  L  D  R  C  F  W  V  A  V  L  P  V  E  M  N  V  L  V  V  P  W  L  W  R :   S  H  *  S  L  S  I  E  T  A  K  A  V  A  M  A  L  H  M  S  G  R  F  T   : I  L  L  E  A  A  M  E  C  L  E  C  I  I  K  D  G  Q  E  S  I  M  *  W :   L  W  T  C  *  A  L  A  Y  G  M  Y  G  I  P  L  G  N   : Q  C  Q  Q  K  W  W  L  V  L  Q  L  S  H  C  R  F  W  K  S  C  M  R  K   : V  M  F  M  E  M  *  S  Q  K  T  F  Y  L  A  S  H  Q  H  H  K  R  R  S  C  S  *  L  T  W  D  W  :  P  Q  S  G  K  T  L  Q  K  G  S  M  S  D  M  I  S  V  L  T  R  S   : E  G  L  F  A  M  Q  V  H  M  L  T  W  E  G  L  P  V  E  E  M  I  W  N  H  L  H  I  H  *  F  F  F  I  E  A  G  S  H  G  R  A  I  R :   V  I  T  N  H  F  *  S  V  K  K  R  W  Q  H  L  Q  R  C  F  V  A  S  A  L  H  L  L  E  N  F  L  I  Q  *  L  T  *  S  L  M  K  N  R  N  I  Q  S  *  S  L  Y  L  G  A  C  L  E  L  I  L  L  *  G  R  S  T  Q  M  V  L  K  R :   L  F  K  L  A  K  S  G  G  D  *  L  *  M  R  K  K  S  S  L  R  R  K  F  E  S  V  F  L  R  R  N  G  F  Q  Y  I  M  P  E  S  R  *  N  R   : G  T  I  T  M  *  Q  T  Q  D  W  H  S  M  W  R  K  G  L  W  M  V  C  L  *  V  V  *  H  H  V  L  A  Y  G  L  S  S  W  M  L  E  R  T  S  L  A  K  F  M  S  C  H  L  S  S  Y  T  R :   S  G  L  W  S  N  G  R  K  T  I  I  L  V  L  L  L  V  A  *  M  E  P  L  *  *  *  C  Q  K  :  A  H  S  S  L  N  S  L  I  K  S  V  S  H  F  P  S  S  G  *  A  R  N  G  K  K  G  S  M  *  P  P  W  Q  L  L  T  L  G  G  L  L  L  C  H  A  I  Q  A  S  V  I  R :   W  *  S  L  I  S  F  I  L  V  R  V  F  I  R  G  G  I  M  V  I  V  L  R  Q  Q  L  L  R  Q  T  K  L  L  L  S  *  V  Y  L  A  E  D  L  V  M  R  L  K  K  L  C  E  H  L  S  F  P  A  H  M  L  R :   K  N  G  E  R  I  C  I  F  L  V  Y  A  M  D  A  L  Y  L  K  T  N  R  D  Q  I  V  V  T  R  H  L  D  L  I  S  C  C  F  I  V  Q  V  *  M  D  G  G  G  G  K  K  L  D  V  S  *  N  V  M  L  *  E  N  F  *  F  V  L  K  L  *  K  C  C  S  C  S  V  *  Q  L  S  A  Y  D  V  V  V  I  L  L  V  Q  E  Q  L  F  L  L  Q  *  L  F  R  V  L  K  F  L  G  K  V  L  M  L  S  L  P  I  D  </first_frame>
            <second_frame>  Y  P  P  L  S  L  L  P  H  S  L  S  K  S  S  A  F  S  S  T  F  T  R  I  T  D  R  L  Q  Y  L  N  K  P  *  H  Q  K  F  V  F  F  S  S  S  F  *  I  W  F  Q  K  F  N  R  V  *  V  C  C  R  N  G  F  G  V  V  F  V  C  L  G  F  *  L  *  *  *  K  Y  K  *  C  V  A  I  G  I  G  L  L  F  L  F  N  F  I  W  V  K  K  N  A  G  V  A  E  W  G  M  S  A  P  C  S  S  S  S  S  *  N  K  T  R  N  E  E  K  G  W  W  R  W  C  W  W  S  E  L  Y  K  D  S  C  C  *  G  *  G  S  G  S  R  S  K  A  C  G  S  R  G  R  G  S  E  G  E  R  K  R  E  S  R  G  R  R  S  *  R  R  A  *  D  G  *  *  E  W  W  F  E  C  *  *  *  S  D  C  T  G  R  *  K  Y  F  S  F  S  *  S   : G  A  S  R  R  I  S  S  L  *  G  *  K  E  A  R  *  R  W  F  W  T  G  V  F  G  S  P  S  Y  R  W  K  *  T  C  *  W  S  L  G  F  G   : G  R  T  E  V  *  A  S  K  Q  Q  R  L  *  L  W  P  S  I  *  V  A  G  L  Q  :  Y  S  W  R  Q  P  W  S  A  *  S  A  L  *  R  T  G  R  R  V  L  C  D   : G  Y  G  H  A  R  P  *  L  M  G  C  M  E  F  L  W  A  I  :  N  V  S  R  N  G  G  L  Y  C  S  *  V  I  V  D  F  G  K  A  A  C  E  R  :  L  C  S  W  R  C  E  A  R  K  L  F  T  W  P  A  I  N  T  T  R  E  E  V  V  P  S  *  L  G  T  G :   H  K  V  E  R  H  F  K  R  A  A  C  R  I  *  S  A  S  *  H  V  Q  :  R  D  C  S  L  C  K  C  T  C  S  L  G  K  D  C  Q  *  K  R  *  F  G  I  T  C  I  Y  T  N  F  S  S  S  R  Q  A  P  M  A  G  L  S   : G  *  *  Q  I  I  F  S  L  *  K  K  D  G  N  I  S  R  D  A  L  L  L  L  P  C  T  F  *  R  I  S  *  Y  S  N  *  H  E  V  *  *  R  T  E  I  F  K  V  N  L  F  I  W  E  L  A  W  S  *  S  C  Y  K  A  D  Q  H  R  W  C  S  K   : G  Y  S  S  W  P  K  A  G  E  T  N  F  K  *  G  R  R  A  A  S  E  E  N  S  N  R  C  S  C  D  A  M  D  F  N  I  *  C  Q  K  A  D  E  T  E  :  V  P  L  Q  C  S  R  H  K  I  G  T  A  C  G  E  R  V  C  G  W  F  V  Y  K  L  C  S  I  M  F  *  L  M  G  Y  H  H  G  C  W  N  E  L  H  *  P  S  L  *  A  V  T  F  L  L  T  Q   : G  V  D  Y  G  A  M  G  E  K  L  L  Y  *  F  S  C  W  W  H  K  W  S  L  F  S  S  N  V  K  R :   H  T  V  H  S  T  V  L  *  S  Q  *  V  I  S  L  Q  V  D  K  Q  E  M  E  R  R  V  P  C  D  L  H  G  N  C  *  H  *  V  G  C  C  Y  V  T  Q  F  R  L  Q  *  S   : G  G  R  A  *  F  P  L  S  *  *  G  Y  S  *  E  V  G  *  W  L  S  Y  Y  G  N  S  C  Y  A  R  P  S  C  S  Y  P  E  C  T  S  P  K  T  W  *  *  D  S  R  N  S  A  N  I  S  V  S  Q  H  T  C  *   : G  K  M  G  K  E  S  V  S  F  L  S  M  L  W  T  H  C  I  L  K  Q  I  V  T  K  L  L  *  P  D  I  W  I  L  Y  L  V  V  S  L  S  K  C  K  W  M  V  V  V  V  R  S  *  M  C  L  R  M  L  C  Y  R  R  T  F  S  L  S  *  N  Y  E  N  V  V  A  A  L  C  N  S  F  L  L  M  M  L  L  L  S  Y  *  Y  R  N  N  C  S  C  C  N  N  C  F  V  Y  S  N  F  W  G  K  F  *  C  Y  L  Y  L  S  I </second_frame>
            <third_frame>   T  H  L  S  L  S  S  P  T  L  S  L  K  V  V  L  F  H  R  H  S  R  G  L  Q  I  V  Y  S  I  *  T  N  P  S  I  K  S  L  F  F  F  L  P  V  F  E  F  G  F  R  N  S  I  E  F  E  F  V  V  E  T  D  L  G  L  F  L  Y  V  *  G  F  D  Y  D  D  E  S  I  S  D  V  L  Q  S  E  S  G  C  C  F  C  S  I  L  Y  G  *  K  R  M  P  E  L  R  S  G  V  C  R  R  R  A  P  P  P  V  V  E  T  K  P  E  T  K  K  R  V  G  G  G  G  V  G  G  R  S  Y  I  K  T  R  A  A  K  A  K  A  A  E  A  E  A  K  L  V  E  V  E  E  E  E  V  K  E  N  E  N  E  R  V  E  G  E  E  V  E  E  E  H  K  M  G  D  E  S  G  G  L  S  A  N  N  K  V  T  A  Q  E  D  E  S  T  S  L  F  P  D  Q  :  V  Q  V  G  G  S  P  V  Y  K  V  E  R  K  L  G  K  G  G  F  G  Q  V  F  L  G  R  R  L  T  G  G  N  E  R  A  S  G  P  L  A  L  E  :  V  A  L  K  F  E  H  R  N  S  K  G  C  S  Y  G  P  P  Y  E  W  Q  V  Y  N :   T  L  G  G  S  H  G  V  P  R  V  H  Y  K  G  R  A  G  E  Y  Y  V  M  :  V  M  D  M  L  G  P  S  L  W  D  V  W  N  S  S  G  Q  S :   M  S  A  E  M  V  A  C  I  A  V  E  S  L  S  I  L  E  K  L  H  A  K  G :   Y  V  H  G  D  V  K  P  E  N  F  L  L  G  Q  P  S  T  P  Q  E  K  K  L  F  L  V  D  L  G  L   : A  T  K  W  K  D  T  S  K  G  Q  H  V  G  Y  D  Q  R  P  D  T  F  R :   G  T  V  R  Y  A  S  A  H  A  H  L  G  R  T  A  S  R  R  D  D  L  E  S  L  A  Y  T  L  I  F  L  H  R  G  R  L  P  W  Q  G  Y  Q  :  G  D  N  K  S  F  L  V  C  K  K  K  M  A  T  S  P  E  M  L  C  C  F  C  P  A  P  F  R  E  F  L  D  T  V  I  N  M  K  F  D  E  E  P  K  Y  S  K  L  I  S  L  F  G  S  L  L  G  A  D  P  A  I  R  P  I  N  T  D  G  A  Q  K  :  A  I  Q  V  G  Q  K  R  G  R  L  T  L  N  E  E  E  E  Q  P  Q  K  K  I  R  I  G  V  P  A  T  Q  W  I  S  I  Y  N  A  R  K  P  M  K  Q  R :   Y  H  Y  N  V  A  D  T  R  L  A  Q  H  V  E  K  G  S  V  D  G  L  S  I  S  C  V  A  S  C  S  S  L  W  A  I  I  M  D  A  G  T  N  F  T  S  Q  V  Y  E  L  S  P  F  F  L  H  K  :  E  W  I  M  E  Q  W  E  K  N  Y  Y  I  S  S  L  A  G  G  I  N  G  A  S  L  V  V  M  S  K   : G  T  Q  F  T  Q  Q  S  Y  K  V  S  E  S  F  P  F  K  W  I  S  K  K  W  K  E  G  F  H  V  T  S  M  A  T  A  N  T  R  W  A  V  V  M  S  R  N  S  G  F  S  D  Q  :  V  V  E  L  D  F  L  Y  P  S  E  G  I  H  K  R  W  D  N  G  Y  R  I  T  A  T  A  A  T  P  D  Q  A  A  L  I  L  S  V  P  R  R  R  P  G  D  E  T  Q  E  T  L  R  T  S  Q  F  P  S  T  H  V  K  :  E  K  W  G  K  N  L  Y  L  S  C  L  C  Y  G  R  T  V  S  *  N  K  S  *  P  N  C  C  N  P  T  F  G  S  Y  I  L  L  F  H  C  P  S  V  N  G  W  W  W  W  *  E  V  R  C  V  L  E  C  Y  A  I  G  E  L  L  V  C  L  K  I  M  K  M  L  *  L  L  C  V  T  A  F  C  L  *  C  C  C  Y  P  T  S  T  G  T  I  V  L  A  A  I  I  V  S  C  T  Q  I  S  G  E  S  F  N  V  I  F  T  Y  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73228" stop="72896"/>
                    <exon start="71787" stop="71659"/>
                    <exon start="71492" stop="71419"/>
                    <exon start="71329" stop="71260"/>
                    <exon start="70233" stop="70178"/>
                    <exon start="69733" stop="69662"/>
                    <exon start="69533" stop="69439"/>
                    <exon start="69361" stop="69295"/>
                    <exon start="69218" stop="69089"/>
                    <exon start="68981" stop="68763"/>
                    <exon start="68678" stop="68542"/>
                    <exon start="67899" stop="67725"/>
                    <exon start="67636" stop="67546"/>
                    <exon start="66654" stop="66497"/>
                    <exon start="65948" stop="65760"/>
                    <exon start="65565" stop="65506"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2052</number_coding_nucleotides>
                  <number_encoded_amino_acids>684</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRMPELRSGVCRRRAPPPVVETKPETKKRVGGGGVGGRSYIKTRAAKAKAAEAEAKLVEVEEEEVKENENERVEGEEVEEEHKMGDESGGLSANNKVTAQEDESTSLFPDQVQVGGSPVYKVERKLGKGGFGQVFLGRRLTGGNERASGPLALEVALKFEHRNSKGCSYGPPYEWQVYNTLGGSHGVPRVHYKGRAGEYYVMVMDMLGPSLWDVWNSSGQSMSAEMVACIAVESLSILEKLHAKGYVHGDVKPENFLLGQPSTPQEKKLFLVDLGLATKWKDTSKGQHVGYDQRPDTFRGTVRYASAHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGYQGDNKSFLVCKKKMATSPEMLCCFCPAPFREFLDTVINMKFDEEPKYSKLISLFGSLLGADPAIRPINTDGAQKAIQVGQKRGRLTLNEEEEQPQKKIRIGVPATQWISIYNARKPMKQRYHYNVADTRLAQHVEKGSVDGLSISCVASCSSLWAIIMDAGTNFTSQVYELSPFFLHKEWIMEQWEKNYYISSLAGGINGASLVVMSKGTQFTQQSYKVSESFPFKWISKKWKEGFHVTSMATANTRWAVVMSRNSGFSDQVVELDFLYPSEGIHKRWDNGYRITATAATPDQAALILSVPRRRPGDETQETLRTSQFPSTHVKEKWGKNLYLSCLCYGRTVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 29 chains have been computed
$ 
$ memory statistics:
$ 32176 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 2298 bytes was the average size of a spliced alignment
$ 18112 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1811 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 31 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:33:39
-->
