<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:30:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212496" ref_strand="+" ref_description="SGN-E212496 [cLEC-74-K21]">
      <seq>agcatgctatggtctagctgcacctcgggatgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaatagtgaagactgagaaatgtggcactgggattgtggcagatgaagatatcaagacaaaagagtttgttgtagagtatgttggagaagttattgatgacaagacatgtgaagagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaatagggatatggtgattgatgccacttataagggaaacaaatccacatacattaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagaatagaattggcatatttgcaacgcgtgacattaaaaggggcgagcatctgacctacgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccaggtagctgcgccctttcccaaaggaaagtactgctatcggcaaaacatgattctcaaactgaagttcccccacaangaaattggagttctgactctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="2768" stop="8149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3068" g_stop="3169" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3170" i_stop="5212" i_length="2043">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5213" g_stop="5291" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="181" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5292" i_stop="5381" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.275" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5382" g_stop="5553" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="353" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5554" i_stop="5680" i_length="127">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5681" g_stop="5761" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="434" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5762" i_stop="5876" i_length="115">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5877" g_stop="6057" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="614" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="7709" i_length="1652">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7710" g_stop="7737" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="642" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7827" g_stop="7849" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="665" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E212496" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3068" e_stop="3169"/>
          <exon e_start="5213" e_stop="5291"/>
          <exon e_start="5382" e_stop="5553"/>
          <exon e_start="5681" e_stop="5761"/>
          <exon e_start="5877" e_stop="6057"/>
          <exon e_start="7710" e_stop="7737"/>
          <exon e_start="7827" e_stop="7849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAGGTATGCACATAAACTTTTAACATAGATATTTGGACTGATGTTAGTTATTGCAGTATTTTGACAGCTTGTAGTCATCATTTATGACCTTGTCATTATCAGTCATTTCTTTGTCTTTTGCAAGAGTTTGTAAACAATTCTTCTCTCATGTAAATTTTCATTTTTCTGACAACTGATGCCAAGGAACTTTGATTAGAACCTGATGTTTCTTATTTCCACTTTTAAGAGGTACACTCTCCAACAAATATGTCAAGTTGGTTTGATCATAAGAAAATTTAATTAAATAATTACAGGTTTCTGCGTGAAACATTATGTGTGAGTGAGTCTTCAAGTGTTGATTACTTCAAGGGTTGGCACATTTTTGGCCAGCGAAAACAAAAATTTATAACACATGATGTGCAATTTAAAATAAATGCGCAATTTAAAATATAGACCATTGTCATTTTTGTAGGGTCAAATTGGCTGATTGAGTGAGTGATTTTAGTCTTAAATCAGACATAAGTTAGTTGCCTGTTGAAATGTAATTTAGATACTTAAAAACTGCGCAGAAGCACTTACATTTGCAATTTCTCCCATATAAACTGTGGCGGCAAAATACATTTCAAAACTTTAAGTCGAAGTACTATTTTCTTTTGACTCTTGGGAAGTGAAATTAGACAAAACTTTTGGCACAGCGGTGGTATATATCGTAAAGGATACACCTCACTGTAAGATAGTTTGCAAGAAAGAAAGTTAATGTTATGTACATAGATATTTTTGTCTACTGAAAGTTAATATTATGTACGTAGATATTTTTGTCTACCTGAGGGCAGGGAAAACTTGGGCAACTATGTTTGGTCTTGTTCATAACAGGTCTGGTCTAGTAAGTTTAAAGAACCTTCAAGGATGCTTAATCTTTTTCATAACAAGTCTGGTCTGGTAAGTTTAAAAAACCTTCAAGGATGCCTTTTTATAACCTTTCTTTGTAGTGGGGTTTCGTATCTAGCATAGAAGTTACCTACCTCTTTACGTGTTCTAAAACATCTAGTGTGAAGAAACTCTACTGATCCAATATAGGATCTATTGAAAGCAGTTCTAGGTTTTAATGTCATGTCTTGTCATATGAGGTGTACTAACCTTTGTGGAGCACTGAAGGTAGGATTAGTATAAGTTTCAATAATATTCTTCACTTCTTTGTGGTCTTTATTTCTTCATGGAGTTTGAAAGTTCCCCTTTTGATGGTTGCTATTTTTCTACTCTTTACCTTCCCATCTGCTTACGTTTATCTGCTTGCAGTTTGAAATAAAAGTCATTAACACAACCTGTAGTTAGTTGCTTATAGATCTAGAGATCTGCAGTATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCAAAAATGACCATTCGACACTTTTCAATTGCAAACAAGTACAATCTGCATCAAAAGTGCAGGCTGGTAACATTTTTCATATCTATTTTTGCATTTAATTCAGTTGTGTATCTGGTGAAGAAGTAAAGAAATGTTGGTTATTTTGTATTCTTCTTATTTTCGTTTCTTTTGAAAACCAAGCAATAATCATCTAAAAAACTAAAGTTTTGTTGACTCATAACGTGCAGACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAGGTGAAGTTTTTTAAGTTTCTTGCTTAATATGAACTAATAATTCGTGTTCTGTTCATCCTGAGCTCTTAATTTAGTAAGTTACAACTGCAGTTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCT</genome_strand>
        <mrna_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG..........................................................................................TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCACATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAG-GAAAGTACTGCTATCGGCAAAACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAAACTGAAGTTCCCCCACAAN.........................................................................................GAAATTGGAGTTCTGACTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212607" ref_strand="+" ref_description="SGN-E212607 [cLEC-74-J24]">
      <seq>agcatgctatggtctagctgcacctcgggatgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaatagtgaagactgagaaatgtggcactgggattgtggcagatgaagatatcaagacaaaagagtttgttgtagagtatgttggagaagttattgatgacaagacatgtgaagagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaatagggatatggtgattgatgccacttataagggaaacaaatccacatacattaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagaatagaattggcatatttgcaacgcgtgacattaaaaggggcgagcatctgacctacgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccangtagctgcgccctttcccaaagagaaagtactgctatcngcaaaacatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="2768" stop="6361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3068" g_stop="3169" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3170" i_stop="5212" i_length="2043">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5213" g_stop="5291" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="181" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5292" i_stop="5381" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.275" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5382" g_stop="5553" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="353" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5554" i_stop="5680" i_length="127">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5681" g_stop="5761" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="434" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5762" i_stop="5876" i_length="115">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5877" g_stop="6057" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="615" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E212607" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3068" e_stop="3169"/>
          <exon e_start="5213" e_stop="5291"/>
          <exon e_start="5382" e_stop="5553"/>
          <exon e_start="5681" e_stop="5761"/>
          <exon e_start="5877" e_stop="6057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAGGTATGCACATAAACTTTTAACATAGATATTTGGACTGATGTTAGTTATTGCAGTATTTTGACAGCTTGTAGTCATCATTTATGACCTTGTCATTATCAGTCATTTCTTTGTCTTTTGCAAGAGTTTGTAAACAATTCTTCTCTCATGTAAATTTTCATTTTTCTGACAACTGATGCCAAGGAACTTTGATTAGAACCTGATGTTTCTTATTTCCACTTTTAAGAGGTACACTCTCCAACAAATATGTCAAGTTGGTTTGATCATAAGAAAATTTAATTAAATAATTACAGGTTTCTGCGTGAAACATTATGTGTGAGTGAGTCTTCAAGTGTTGATTACTTCAAGGGTTGGCACATTTTTGGCCAGCGAAAACAAAAATTTATAACACATGATGTGCAATTTAAAATAAATGCGCAATTTAAAATATAGACCATTGTCATTTTTGTAGGGTCAAATTGGCTGATTGAGTGAGTGATTTTAGTCTTAAATCAGACATAAGTTAGTTGCCTGTTGAAATGTAATTTAGATACTTAAAAACTGCGCAGAAGCACTTACATTTGCAATTTCTCCCATATAAACTGTGGCGGCAAAATACATTTCAAAACTTTAAGTCGAAGTACTATTTTCTTTTGACTCTTGGGAAGTGAAATTAGACAAAACTTTTGGCACAGCGGTGGTATATATCGTAAAGGATACACCTCACTGTAAGATAGTTTGCAAGAAAGAAAGTTAATGTTATGTACATAGATATTTTTGTCTACTGAAAGTTAATATTATGTACGTAGATATTTTTGTCTACCTGAGGGCAGGGAAAACTTGGGCAACTATGTTTGGTCTTGTTCATAACAGGTCTGGTCTAGTAAGTTTAAAGAACCTTCAAGGATGCTTAATCTTTTTCATAACAAGTCTGGTCTGGTAAGTTTAAAAAACCTTCAAGGATGCCTTTTTATAACCTTTCTTTGTAGTGGGGTTTCGTATCTAGCATAGAAGTTACCTACCTCTTTACGTGTTCTAAAACATCTAGTGTGAAGAAACTCTACTGATCCAATATAGGATCTATTGAAAGCAGTTCTAGGTTTTAATGTCATGTCTTGTCATATGAGGTGTACTAACCTTTGTGGAGCACTGAAGGTAGGATTAGTATAAGTTTCAATAATATTCTTCACTTCTTTGTGGTCTTTATTTCTTCATGGAGTTTGAAAGTTCCCCTTTTGATGGTTGCTATTTTTCTACTCTTTACCTTCCCATCTGCTTACGTTTATCTGCTTGCAGTTTGAAATAAAAGTCATTAACACAACCTGTAGTTAGTTGCTTATAGATCTAGAGATCTGCAGTATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCAAAAATGACCATTCGACACTTTTCAATTGCAAACAAGTACAATCTGCATCAAAAGTGCAGGCTGGTAACATTTTTCATATCTATTTTTGCATTTAATTCAGTTGTGTATCTGGTGAAGAAGTAAAGAAATGTTGGTTATTTTGTATTCTTCTTATTTTCGTTTCTTTTGAAAACCAAGCAATAATCATCTAAAAAACTAAAGTTTTGTTGACTCATAACGTGCAGACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAGGTGAAGTTTTTTAAGTTTCTTGCTTAATATGAACTAATAATTCGTGTTCTGTTCATCCTGAGCTCTTAATTTAGTAAGTTACAACTGCAGTTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT</genome_strand>
        <mrna_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG..........................................................................................TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCACATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCANGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCNGCAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213254" ref_strand="+" ref_description="SGN-E213254 [cLEC-72-N4]">
      <seq>agcatgctatggtctagctgcacctcgggatgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaatagtgaagactgagaaatgtggcactgggattgtggcagatgaagatatcaagacaaaagagtttgttgtagagtatgttggagaagttattgatgacaagacatgtgaagagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaatagggatatggtgattgatgccacttataagggaaacaaatccacatacattaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagaatagaattggcatatttgcaacgcgtgacattaaaaggggcgagcatctgacctacgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccaggtagctgcgccctttcccaaagagaaagtactgctatcggcaaaacatgattctcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="2768" stop="6370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3068" g_stop="3169" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3170" i_stop="5212" i_length="2043">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5213" g_stop="5291" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="181" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5292" i_stop="5381" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.275" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5382" g_stop="5553" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="353" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5554" i_stop="5680" i_length="127">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5681" g_stop="5761" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="434" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5762" i_stop="5876" i_length="115">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5877" g_stop="6057" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="615" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E213254" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3068" e_stop="3169"/>
          <exon e_start="5213" e_stop="5291"/>
          <exon e_start="5382" e_stop="5553"/>
          <exon e_start="5681" e_stop="5761"/>
          <exon e_start="5877" e_stop="6057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAGGTATGCACATAAACTTTTAACATAGATATTTGGACTGATGTTAGTTATTGCAGTATTTTGACAGCTTGTAGTCATCATTTATGACCTTGTCATTATCAGTCATTTCTTTGTCTTTTGCAAGAGTTTGTAAACAATTCTTCTCTCATGTAAATTTTCATTTTTCTGACAACTGATGCCAAGGAACTTTGATTAGAACCTGATGTTTCTTATTTCCACTTTTAAGAGGTACACTCTCCAACAAATATGTCAAGTTGGTTTGATCATAAGAAAATTTAATTAAATAATTACAGGTTTCTGCGTGAAACATTATGTGTGAGTGAGTCTTCAAGTGTTGATTACTTCAAGGGTTGGCACATTTTTGGCCAGCGAAAACAAAAATTTATAACACATGATGTGCAATTTAAAATAAATGCGCAATTTAAAATATAGACCATTGTCATTTTTGTAGGGTCAAATTGGCTGATTGAGTGAGTGATTTTAGTCTTAAATCAGACATAAGTTAGTTGCCTGTTGAAATGTAATTTAGATACTTAAAAACTGCGCAGAAGCACTTACATTTGCAATTTCTCCCATATAAACTGTGGCGGCAAAATACATTTCAAAACTTTAAGTCGAAGTACTATTTTCTTTTGACTCTTGGGAAGTGAAATTAGACAAAACTTTTGGCACAGCGGTGGTATATATCGTAAAGGATACACCTCACTGTAAGATAGTTTGCAAGAAAGAAAGTTAATGTTATGTACATAGATATTTTTGTCTACTGAAAGTTAATATTATGTACGTAGATATTTTTGTCTACCTGAGGGCAGGGAAAACTTGGGCAACTATGTTTGGTCTTGTTCATAACAGGTCTGGTCTAGTAAGTTTAAAGAACCTTCAAGGATGCTTAATCTTTTTCATAACAAGTCTGGTCTGGTAAGTTTAAAAAACCTTCAAGGATGCCTTTTTATAACCTTTCTTTGTAGTGGGGTTTCGTATCTAGCATAGAAGTTACCTACCTCTTTACGTGTTCTAAAACATCTAGTGTGAAGAAACTCTACTGATCCAATATAGGATCTATTGAAAGCAGTTCTAGGTTTTAATGTCATGTCTTGTCATATGAGGTGTACTAACCTTTGTGGAGCACTGAAGGTAGGATTAGTATAAGTTTCAATAATATTCTTCACTTCTTTGTGGTCTTTATTTCTTCATGGAGTTTGAAAGTTCCCCTTTTGATGGTTGCTATTTTTCTACTCTTTACCTTCCCATCTGCTTACGTTTATCTGCTTGCAGTTTGAAATAAAAGTCATTAACACAACCTGTAGTTAGTTGCTTATAGATCTAGAGATCTGCAGTATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCAAAAATGACCATTCGACACTTTTCAATTGCAAACAAGTACAATCTGCATCAAAAGTGCAGGCTGGTAACATTTTTCATATCTATTTTTGCATTTAATTCAGTTGTGTATCTGGTGAAGAAGTAAAGAAATGTTGGTTATTTTGTATTCTTCTTATTTTCGTTTCTTTTGAAAACCAAGCAATAATCATCTAAAAAACTAAAGTTTTGTTGACTCATAACGTGCAGACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAGGTGAAGTTTTTTAAGTTTCTTGCTTAATATGAACTAATAATTCGTGTTCTGTTCATCCTGAGCTCTTAATTTAGTAAGTTACAACTGCAGTTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT</genome_strand>
        <mrna_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG..........................................................................................TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCACATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272498" ref_strand="+" ref_description="SGN-E272498 [cLEM-19-N18]">
      <seq>ttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaatagtgaagactgagaaatgtggcactgggattgtggcagatgaagatatcaagacaaaagagtttgttgtagagtatgttggagaagttattgatgacaagacatgtgaagagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaatagggatatggtgattgatgccacttataagggaaacaaatccagatacattaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagaatagaattggcatatttgcaacgcgtgacattaaaaggggcgagcatctgacctacgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccaagtagctgcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="2815" stop="6321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3115" g_stop="3169" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3170" i_stop="5212" i_length="2043">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5213" g_stop="5291" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="134" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5292" i_stop="5381" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.275" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5382" g_stop="5553" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="306" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5554" i_stop="5680" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5681" g_stop="5761" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="387" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5762" i_stop="5876" i_length="115">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5877" g_stop="6021" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="532" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E272498" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3115" e_stop="3169"/>
          <exon e_start="5213" e_stop="5291"/>
          <exon e_start="5382" e_stop="5553"/>
          <exon e_start="5681" e_stop="5761"/>
          <exon e_start="5877" e_stop="6021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAGGTATGCACATAAACTTTTAACATAGATATTTGGACTGATGTTAGTTATTGCAGTATTTTGACAGCTTGTAGTCATCATTTATGACCTTGTCATTATCAGTCATTTCTTTGTCTTTTGCAAGAGTTTGTAAACAATTCTTCTCTCATGTAAATTTTCATTTTTCTGACAACTGATGCCAAGGAACTTTGATTAGAACCTGATGTTTCTTATTTCCACTTTTAAGAGGTACACTCTCCAACAAATATGTCAAGTTGGTTTGATCATAAGAAAATTTAATTAAATAATTACAGGTTTCTGCGTGAAACATTATGTGTGAGTGAGTCTTCAAGTGTTGATTACTTCAAGGGTTGGCACATTTTTGGCCAGCGAAAACAAAAATTTATAACACATGATGTGCAATTTAAAATAAATGCGCAATTTAAAATATAGACCATTGTCATTTTTGTAGGGTCAAATTGGCTGATTGAGTGAGTGATTTTAGTCTTAAATCAGACATAAGTTAGTTGCCTGTTGAAATGTAATTTAGATACTTAAAAACTGCGCAGAAGCACTTACATTTGCAATTTCTCCCATATAAACTGTGGCGGCAAAATACATTTCAAAACTTTAAGTCGAAGTACTATTTTCTTTTGACTCTTGGGAAGTGAAATTAGACAAAACTTTTGGCACAGCGGTGGTATATATCGTAAAGGATACACCTCACTGTAAGATAGTTTGCAAGAAAGAAAGTTAATGTTATGTACATAGATATTTTTGTCTACTGAAAGTTAATATTATGTACGTAGATATTTTTGTCTACCTGAGGGCAGGGAAAACTTGGGCAACTATGTTTGGTCTTGTTCATAACAGGTCTGGTCTAGTAAGTTTAAAGAACCTTCAAGGATGCTTAATCTTTTTCATAACAAGTCTGGTCTGGTAAGTTTAAAAAACCTTCAAGGATGCCTTTTTATAACCTTTCTTTGTAGTGGGGTTTCGTATCTAGCATAGAAGTTACCTACCTCTTTACGTGTTCTAAAACATCTAGTGTGAAGAAACTCTACTGATCCAATATAGGATCTATTGAAAGCAGTTCTAGGTTTTAATGTCATGTCTTGTCATATGAGGTGTACTAACCTTTGTGGAGCACTGAAGGTAGGATTAGTATAAGTTTCAATAATATTCTTCACTTCTTTGTGGTCTTTATTTCTTCATGGAGTTTGAAAGTTCCCCTTTTGATGGTTGCTATTTTTCTACTCTTTACCTTCCCATCTGCTTACGTTTATCTGCTTGCAGTTTGAAATAAAAGTCATTAACACAACCTGTAGTTAGTTGCTTATAGATCTAGAGATCTGCAGTATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCAAAAATGACCATTCGACACTTTTCAATTGCAAACAAGTACAATCTGCATCAAAAGTGCAGGCTGGTAACATTTTTCATATCTATTTTTGCATTTAATTCAGTTGTGTATCTGGTGAAGAAGTAAAGAAATGTTGGTTATTTTGTATTCTTCTTATTTTCGTTTCTTTTGAAAACCAAGCAATAATCATCTAAAAAACTAAAGTTTTGTTGACTCATAACGTGCAGACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAGGTGAAGTTTTTTAAGTTTCTTGCTTAATATGAACTAATAATTCGTGTTCTGTTCATCCTGAGCTCTTAATTTAGTAAGTTACAACTGCAGTTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCC</genome_strand>
        <mrna_strand>TTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG..........................................................................................TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAAGTAGCTGCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458313" ref_strand="+" ref_description="SGN-E458313 [cPRO-5-G10]">
      <seq>gagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaataggaatatggtgattgatgccacttataagggaaacaaatccagatacatcaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagacaagaattggcatatttgcgacacgtgacattaaaaagggggagcatctgacctatgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccaggtagctgcgccctttcccaaagagaaagtactgctatctgcaaaacatgattctctaactgaggttcccccaaaaggaaattggagttttgactctgcttggagaatccagcatcctcggaattgcacaggtcaaattataagaataattcgctcttctgaccagagtcctgttgattcactggagtctcgaatacccgatgtttccagttcctttggaatcataaaacagtttgacagcatcaccaaaaaacatttgatcatgtttgaagacggtagtgttgagcaccttgacttgtcaaaagaagattggggattttgtaactttgcttaatcaggtcttaagctgtcgaaataaagatatacatgattcaacctcagtagctgatacgcgacatattcttacaatccaaaattgcaaagtgtcctatagctttgctcctgctgtaccaatgtgcaaagttcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="5105" stop="10366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5405" g_stop="5553" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5554" i_stop="5680" i_length="127">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5681" g_stop="5761" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="230" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5762" i_stop="5876" i_length="115">
            <donor d_prob="0.959" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5877" g_stop="6057" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="411" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6058" i_stop="7709" i_length="1652">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7710" g_stop="7737" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="439" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7827" g_stop="7917" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="530" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7918" i_stop="9129" i_length="1212">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9130" g_stop="9220" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="621" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9221" i_stop="9315" i_length="95">
            <donor d_prob="0.195" d_score="0.98"/>
            <acceptor a_prob="0.555" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9316" g_stop="9394" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="700" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9395" i_stop="9931" i_length="537">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9932" g_stop="10065" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="832" r_length="132" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E458313" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5405" e_stop="5553"/>
          <exon e_start="5681" e_stop="5761"/>
          <exon e_start="5877" e_stop="6057"/>
          <exon e_start="7710" e_stop="7737"/>
          <exon e_start="7827" e_stop="7917"/>
          <exon e_start="9130" e_stop="9220"/>
          <exon e_start="9316" e_stop="9394"/>
          <exon e_start="9932" e_stop="10065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAGGTATGTCGGTCTGTACGGGTGCATATTCTTTTTGTTAACATAGGCACTCTTGCATTTTCCATTGGCAAGTAATGGAAAATCAGCAAGTTCTTGTTCTATGAAAAATTTGTGATTGAGTTACCAATTATATTTAATATATATGTTATCTTTATTGTTGTTTTCTATTACTACTATCTTATGGTTTCACTTTCAGTAATCTTGGAGTCTTGTTTTAAAAATAAACAATAATAATAGGATCTTTTAAAAGTTTATAGATTGAGGTTCAAAACTTGTATATTTTGATCCCATGACCGTTTCTGTAGTGTAATTAAGTACACAAAATCTTGAACTAGAATAGTTCTATAGATTGAACTTATGTTTTATGTGCAGAACAGATAATGCATTATAGCTAGAGACAGTTATATAAGTTTTGGCCATGTCTGAGTAAAAGATATTTCCTTTTGGTCACCTAATGCTGTTCTGTCTATTAGGAAAGGGAGAAAGATTGCGAGCTTCCATACATGCTCCAGTTTTTCTCCATTCTAGTCATAAATCATCTGTCTGTGTACATATGCCTGAGAAAGTGCATTTAGAAAGGAATCAAATCACTTAGACATCTAATATATGTAGCCTAAATTTGAGCTTTGGCGGTTGGAGTATAGTATTTTAGCTTCCACTTTCATAATGTTTAGCTTTTTCTTTTAACTTTGAAGTATTTCTTAGTTCTCTAGGAAGTTTATTCAAACCTCAGATTTCAATTTTATATGCTGAGATATTTTCACGAAACCTTCTATTTATTTCTATTCATAGAGTAATTAGAAATTTGTTTCACATGTGGTCTCCATGGTTTCTTTTCACATAGCATCTCTTTTTTAAGTTCTCTTTGTAACTTTTTCTTATCTAATCCTCAGGTTCGTACTAAACATTCTTTGCATTAGGAATTGTCTACTAACTTTATATGCGTGTGGTAACCAAGTATGAAAGTGATGTCAATCTTGTTAACTTAATTTTTAAAGAAATATCTATTAAACGTAGAAGCTAGCAAGTTTCTCTGTTGGATACTCTATTAATTGGCTGGTCGTTCGTTTCTTCTCATTTATTTGTTCATATTTTTACATTCTTCAGTCCTGTTGACTTCCTGGTGAAATTTCTCTCTGGGAACTCTATCCATTTGTTGGACATTTATTATTCGGTTTCTTCTCATGTATTTGTTCATGTTGTTACACTTTTCAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTGGTAAGGAAGTTTTTGAATTGTTTAGTGTGTAACTCGGACACCCATGATTTGGCTGAAGATTTACTCTTGTTCTCATTCCCCACCCGCCCTAACAGATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGGGTATTTTGTTCCAACTTTCTATTGAATTTTGAACCTATTATTTGTTCCTAGTGTAGTTGAAATCCCCAAAAACTATTTTATTGAGCCAAGTGTATCAGAAACAGCCTCCTAGCTCACCAAATTCAGGTCTGCATACACGCAGCCTCCCCAGAACTACTTGTACTTCAGTTGAAATGGATCCATGTACCTAGTTCAGGTTCAAAGGGTGAATTCTAATCTATGTTGCTCAGACTTTCCAAAAATGCTGCCGTAGACGAATCCTCTAAAACTGCACTACTTTTGGAGGATTCGGCACGCACTGGTCAACTTCGTTTTAATGAGTCTGAGCATCAGAGATTTATACACCAGTACAAAATACAGCAAACTTGTAGTAGTACCTTTTATTTCTATTTTGTATAATATTCGTGTGAGATTAGGTTGAATGGAACGATCTCATCAATGAGGATTCATATAGCCCACTCCAACTTGTTTGGGGTCGAGGCATTGTTGTTGTTGCTGTTTTCAATGGAATCTATAACGGAACGAGTACTTTTGCAGGTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGCAAAGTTTCATTT</genome_strand>
        <mrna_strand>GAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGAATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATCAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGACAAGAATTGGCATATTTGCGACACGTGACATTAAAAAGGGGGAGCATCTGACCTATGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCTGCAAAACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCTAACTGAGGTTCCCCCAAAAG.........................................................................................GAAATTGGAGTTTTGACTCTGCTTGGAGAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTCTTCTGACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGATTCACTGGAGTCTCGAATACCCGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGCATCACCAAAAAACATTTG...............................................................................................ATCATGTTTGAAGACGGTAGTGTTGAGCACCTTGACTTGTCAAAAGAAGATTGGGGATTTTGTAACTTTGCTTAATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGACATATTCTT-ACAATCCAAAATTGCAAAGTGTCCTATAGCTTTGCTCCTGCTGTACC-AATGTGCAAAGTTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429949" ref_strand="+" ref_description="SGN-E429949 [STM-52-L18]">
      <seq>gagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaataggaatatggtgattgatgccacttataagggaaacaaatccagatacatcaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagacaagaattggcatatttgcgacacgtgacattaaaaagggggagcatctgacctatgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccaggtagctgcgccctttcccaaagagaaagtactgctatctgcaaaacatgattctctaactgaggttcccccaaaaggaaattggagttttgactctgcttggagaatccagcatcctcggaattgcacaggtcaaattataagaataattcgctcttctgaccagagtcctgttgattcactggagtctcgaatacccgatgtttccagttcctttggaatcataaaacagtttgacagcatcaccaaaaaacatttgatcatgtttgaagacggtagtgttgagcaccttgacttgtcaaaagaagattggggattttgtaactttgcttaatcangtcttaagctgtcgaaataaagatatacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="5105" stop="10263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5405" g_stop="5553" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5554" i_stop="5680" i_length="127">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5681" g_stop="5761" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="230" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5762" i_stop="5876" i_length="115">
            <donor d_prob="0.959" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5877" g_stop="6057" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="411" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6058" i_stop="7709" i_length="1652">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7710" g_stop="7737" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="439" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7827" g_stop="7917" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="530" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7918" i_stop="9129" i_length="1212">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9130" g_stop="9220" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="621" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9221" i_stop="9315" i_length="95">
            <donor d_prob="0.195" d_score="0.98"/>
            <acceptor a_prob="0.555" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9316" g_stop="9394" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="700" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9395" i_stop="9931" i_length="537">
            <donor d_prob="0.951" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9932" g_stop="9963" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="732" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E429949" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5405" e_stop="5553"/>
          <exon e_start="5681" e_stop="5761"/>
          <exon e_start="5877" e_stop="6057"/>
          <exon e_start="7710" e_stop="7737"/>
          <exon e_start="7827" e_stop="7917"/>
          <exon e_start="9130" e_stop="9220"/>
          <exon e_start="9316" e_stop="9394"/>
          <exon e_start="9932" e_stop="9963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAGGTATGTCGGTCTGTACGGGTGCATATTCTTTTTGTTAACATAGGCACTCTTGCATTTTCCATTGGCAAGTAATGGAAAATCAGCAAGTTCTTGTTCTATGAAAAATTTGTGATTGAGTTACCAATTATATTTAATATATATGTTATCTTTATTGTTGTTTTCTATTACTACTATCTTATGGTTTCACTTTCAGTAATCTTGGAGTCTTGTTTTAAAAATAAACAATAATAATAGGATCTTTTAAAAGTTTATAGATTGAGGTTCAAAACTTGTATATTTTGATCCCATGACCGTTTCTGTAGTGTAATTAAGTACACAAAATCTTGAACTAGAATAGTTCTATAGATTGAACTTATGTTTTATGTGCAGAACAGATAATGCATTATAGCTAGAGACAGTTATATAAGTTTTGGCCATGTCTGAGTAAAAGATATTTCCTTTTGGTCACCTAATGCTGTTCTGTCTATTAGGAAAGGGAGAAAGATTGCGAGCTTCCATACATGCTCCAGTTTTTCTCCATTCTAGTCATAAATCATCTGTCTGTGTACATATGCCTGAGAAAGTGCATTTAGAAAGGAATCAAATCACTTAGACATCTAATATATGTAGCCTAAATTTGAGCTTTGGCGGTTGGAGTATAGTATTTTAGCTTCCACTTTCATAATGTTTAGCTTTTTCTTTTAACTTTGAAGTATTTCTTAGTTCTCTAGGAAGTTTATTCAAACCTCAGATTTCAATTTTATATGCTGAGATATTTTCACGAAACCTTCTATTTATTTCTATTCATAGAGTAATTAGAAATTTGTTTCACATGTGGTCTCCATGGTTTCTTTTCACATAGCATCTCTTTTTTAAGTTCTCTTTGTAACTTTTTCTTATCTAATCCTCAGGTTCGTACTAAACATTCTTTGCATTAGGAATTGTCTACTAACTTTATATGCGTGTGGTAACCAAGTATGAAAGTGATGTCAATCTTGTTAACTTAATTTTTAAAGAAATATCTATTAAACGTAGAAGCTAGCAAGTTTCTCTGTTGGATACTCTATTAATTGGCTGGTCGTTCGTTTCTTCTCATTTATTTGTTCATATTTTTACATTCTTCAGTCCTGTTGACTTCCTGGTGAAATTTCTCTCTGGGAACTCTATCCATTTGTTGGACATTTATTATTCGGTTTCTTCTCATGTATTTGTTCATGTTGTTACACTTTTCAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTGGTAAGGAAGTTTTTGAATTGTTTAGTGTGTAACTCGGACACCCATGATTTGGCTGAAGATTTACTCTTGTTCTCATTCCCCACCCGCCCTAACAGATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGGGTATTTTGTTCCAACTTTCTATTGAATTTTGAACCTATTATTTGTTCCTAGTGTAGTTGAAATCCCCAAAAACTATTTTATTGAGCCAAGTGTATCAGAAACAGCCTCCTAGCTCACCAAATTCAGGTCTGCATACACGCAGCCTCCCCAGAACTACTTGTACTTCAGTTGAAATGGATCCATGTACCTAGTTCAGGTTCAAAGGGTGAATTCTAATCTATGTTGCTCAGACTTTCCAAAAATGCTGCCGTAGACGAATCCTCTAAAACTGCACTACTTTTGGAGGATTCGGCACGCACTGGTCAACTTCGTTTTAATGAGTCTGAGCATCAGAGATTTATACACCAGTACAAAATACAGCAAACTTGTAGTAGTACCTTTTATTTCTATTTTGTATAATATTCGTGTGAGATTAGGTTGAATGGAACGATCTCATCAATGAGGATTCATATAGCCCACTCCAACTTGTTTGGGGTCGAGGCATTGTTGTTGTTGCTGTTTTCAATGGAATCTATAACGGAACGAGTACTTTTGCAGGTCTTAAACTGTCGAAATAAAGATATACATGA</genome_strand>
        <mrna_strand>GAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGAATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATCAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGACAAGAATTGGCATATTTGCGACACGTGACATTAAAAAGGGGGAGCATCTGACCTATGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCTGCAAAACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCTAACTGAGGTTCCCCCAAAAG.........................................................................................GAAATTGGAGTTTTGACTCTGCTTGGAGAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTCTTCTGACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGATTCACTGGAGTCTCGAATACCCGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGCATCACCAAAAAACATTTG...............................................................................................ATCATGTTTGAAGACGGTAGTGTTGAGCACCTTGACTTGTCAAAAGAAGATTGGGGATTTTGTAACTTTGCTTAATCAN.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGTCGAAATAAAGATATACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458433" ref_strand="+" ref_description="SGN-E458433 [cPRO-5-P17]">
      <seq>gagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaataggaatatggtgattgatgccacttataagggaaacaaatccagatacatcaatcataactgttgtccaaatactgatatgcagagatggatgattgatggtgagacaagaattggcatatttgcgacacgtgacattaaaaagggggagcatctgacctatgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcacacctaacaaactaaaacttccttcttcacatgctgctgcactaaagctagtggcatgccaggtagctgcaccctttcccaaagatacagtactgctatctgcaaaacatgattctctaactgaggatcccccataaggaaattggagttatgactctgcttggagaatccagcatcctcggaattgcacaggtcatattataagaataattcgctcttctgaccagagtcctgttgattcactggagtctcgaatacccgatagttccagttcctttggaatcataaaacagtttgacagcatcaccaaaaaacatttgatcatgtttgtacacggtaatgttgagcaccttgacttgtcataagaagattggggattttgtaactttgcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="5105" stop="9690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5405" g_stop="5553" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5554" i_stop="5680" i_length="127">
            <donor d_prob="0.940" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5681" g_stop="5761" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="230" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5762" i_stop="5876" i_length="115">
            <donor d_prob="0.959" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5877" g_stop="6057" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="411" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6058" i_stop="7709" i_length="1652">
            <donor d_prob="0.980" d_score="0.92"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7710" g_stop="7737" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="439" r_length="28" r_score="0.857"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7827" g_stop="7917" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="530" r_length="91" r_score="0.945"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7918" i_stop="9129" i_length="1212">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9130" g_stop="9220" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="621" r_length="91" r_score="0.945"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9221" i_stop="9315" i_length="95">
            <donor d_prob="0.195" d_score="0.98"/>
            <acceptor a_prob="0.555" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9316" g_stop="9390" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="696" r_length="75" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E458433" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5405" e_stop="5553"/>
          <exon e_start="5681" e_stop="5761"/>
          <exon e_start="5877" e_stop="6057"/>
          <exon e_start="7710" e_stop="7737"/>
          <exon e_start="7827" e_stop="7917"/>
          <exon e_start="9130" e_stop="9220"/>
          <exon e_start="9316" e_stop="9390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAGGTATGTCGGTCTGTACGGGTGCATATTCTTTTTGTTAACATAGGCACTCTTGCATTTTCCATTGGCAAGTAATGGAAAATCAGCAAGTTCTTGTTCTATGAAAAATTTGTGATTGAGTTACCAATTATATTTAATATATATGTTATCTTTATTGTTGTTTTCTATTACTACTATCTTATGGTTTCACTTTCAGTAATCTTGGAGTCTTGTTTTAAAAATAAACAATAATAATAGGATCTTTTAAAAGTTTATAGATTGAGGTTCAAAACTTGTATATTTTGATCCCATGACCGTTTCTGTAGTGTAATTAAGTACACAAAATCTTGAACTAGAATAGTTCTATAGATTGAACTTATGTTTTATGTGCAGAACAGATAATGCATTATAGCTAGAGACAGTTATATAAGTTTTGGCCATGTCTGAGTAAAAGATATTTCCTTTTGGTCACCTAATGCTGTTCTGTCTATTAGGAAAGGGAGAAAGATTGCGAGCTTCCATACATGCTCCAGTTTTTCTCCATTCTAGTCATAAATCATCTGTCTGTGTACATATGCCTGAGAAAGTGCATTTAGAAAGGAATCAAATCACTTAGACATCTAATATATGTAGCCTAAATTTGAGCTTTGGCGGTTGGAGTATAGTATTTTAGCTTCCACTTTCATAATGTTTAGCTTTTTCTTTTAACTTTGAAGTATTTCTTAGTTCTCTAGGAAGTTTATTCAAACCTCAGATTTCAATTTTATATGCTGAGATATTTTCACGAAACCTTCTATTTATTTCTATTCATAGAGTAATTAGAAATTTGTTTCACATGTGGTCTCCATGGTTTCTTTTCACATAGCATCTCTTTTTTAAGTTCTCTTTGTAACTTTTTCTTATCTAATCCTCAGGTTCGTACTAAACATTCTTTGCATTAGGAATTGTCTACTAACTTTATATGCGTGTGGTAACCAAGTATGAAAGTGATGTCAATCTTGTTAACTTAATTTTTAAAGAAATATCTATTAAACGTAGAAGCTAGCAAGTTTCTCTGTTGGATACTCTATTAATTGGCTGGTCGTTCGTTTCTTCTCATTTATTTGTTCATATTTTTACATTCTTCAGTCCTGTTGACTTCCTGGTGAAATTTCTCTCTGGGAACTCTATCCATTTGTTGGACATTTATTATTCGGTTTCTTCTCATGTATTTGTTCATGTTGTTACACTTTTCAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTGGTAAGGAAGTTTTTGAATTGTTTAGTGTGTAACTCGGACACCCATGATTTGGCTGAAGATTTACTCTTGTTCTCATTCCCCACCCGCCCTAACAGATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAA</genome_strand>
        <mrna_strand>GAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGAATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATCAATCATAACTGTTGTCCAAATACTGATATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGACAAGAATTGGCATATTTGCGACACGTGACATTAAAAAGGGGGAGCATCTGACCTATGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCACACCTAACAAACTAAAACTTCCTTCTTCACATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCACCCTTTCCCAAAGATACAGTACTGCTATCTGCAAAACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCTAACTGAGGATCCCCCATAAG.........................................................................................GAAATTGGAGTTATGACTCTGCTTGGAGAATCCAGCATCCTCGGAATTGCACAGGTCATATTATAAGAATAATTCGCTCTTCTGACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGATTCACTGGAGTCTCGAATACCCGATAGTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGCATCACCAAAAAACATTTG...............................................................................................ATCATGTTTGTACACGGTAATGTTGAGCACCTTGACTTGTCATAAGAAGATTGGGGATTTTGTAACTTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429950" ref_strand="-" ref_description="SGN-E429950 [STM-52-L18]">
      <seq>agtggcatgccaggtagctgcgccctttcccaaagagaaagtactgctatctgcaaaacatgatcttctaactgaggttcccccaaaaggaaattggagttttgactctgcttggagaatccagcatcctcggaattgcacaggtcaaattataagaataattcgctcttctgaccagagtcctgttgattcactggagtctcgaatacccgatgtttccagttcctttggaatcataaaacagtttgacagcatcaccaaaaaacatttgatcatgtttgaagacggtagtgttgagcaccttgacttgtcaaaagaagattggggattttgtaactttgcttaatcaggtcttaagctgtcgaaataaagatatacatgattcaacctcagtagctgatacgcgacatattcttacaatccaaaattgcaaagtgtcctatagctttgctcctgctgtaccaaatgtgcaaagtttccttttaacatattctttcgggtgataatgtcagttcactcttccttttactggagagggaagttctgatgattatttccgatgcattagcacaacaaatgtaacaatagctcaccctgttccaattatatcggatgtcccctaagaaacatgttgactctgtggatcataatttatttactagtcgtaaagatggatttgttagctctcgattttcgtgtgtagttgaggattcaaatagccgatcccaacttgcttgggattgtggtatagtccttgttatgttcttattcaatgcactcttttggcctccaaaagaatatttgtttcncaaaaaaaaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="5697" stop="10705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5997" g_stop="6057" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6058" i_stop="7709" i_length="1652">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7710" g_stop="7737" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="89" r_length="28" r_score="0.857"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7827" g_stop="7917" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="180" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7918" i_stop="9129" i_length="1212">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9130" g_stop="9220" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="271" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9221" i_stop="9315" i_length="95">
            <donor d_prob="0.195" d_score="0.98"/>
            <acceptor a_prob="0.555" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9316" g_stop="9394" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="350" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9395" i_stop="9931" i_length="537">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9932" g_stop="10404" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="811" r_length="461" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="812" polyA_stop="822"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E429950" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429950" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5997" e_stop="6057"/>
          <exon e_start="7710" e_stop="7737"/>
          <exon e_start="7827" e_stop="7917"/>
          <exon e_start="9130" e_stop="9220"/>
          <exon e_start="9316" e_stop="9394"/>
          <exon e_start="9932" e_stop="10404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAGGTATGTCGGTCTGTACGGGTGCATATTCTTTTTGTTAACATAGGCACTCTTGCATTTTCCATTGGCAAGTAATGGAAAATCAGCAAGTTCTTGTTCTATGAAAAATTTGTGATTGAGTTACCAATTATATTTAATATATATGTTATCTTTATTGTTGTTTTCTATTACTACTATCTTATGGTTTCACTTTCAGTAATCTTGGAGTCTTGTTTTAAAAATAAACAATAATAATAGGATCTTTTAAAAGTTTATAGATTGAGGTTCAAAACTTGTATATTTTGATCCCATGACCGTTTCTGTAGTGTAATTAAGTACACAAAATCTTGAACTAGAATAGTTCTATAGATTGAACTTATGTTTTATGTGCAGAACAGATAATGCATTATAGCTAGAGACAGTTATATAAGTTTTGGCCATGTCTGAGTAAAAGATATTTCCTTTTGGTCACCTAATGCTGTTCTGTCTATTAGGAAAGGGAGAAAGATTGCGAGCTTCCATACATGCTCCAGTTTTTCTCCATTCTAGTCATAAATCATCTGTCTGTGTACATATGCCTGAGAAAGTGCATTTAGAAAGGAATCAAATCACTTAGACATCTAATATATGTAGCCTAAATTTGAGCTTTGGCGGTTGGAGTATAGTATTTTAGCTTCCACTTTCATAATGTTTAGCTTTTTCTTTTAACTTTGAAGTATTTCTTAGTTCTCTAGGAAGTTTATTCAAACCTCAGATTTCAATTTTATATGCTGAGATATTTTCACGAAACCTTCTATTTATTTCTATTCATAGAGTAATTAGAAATTTGTTTCACATGTGGTCTCCATGGTTTCTTTTCACATAGCATCTCTTTTTTAAGTTCTCTTTGTAACTTTTTCTTATCTAATCCTCAGGTTCGTACTAAACATTCTTTGCATTAGGAATTGTCTACTAACTTTATATGCGTGTGGTAACCAAGTATGAAAGTGATGTCAATCTTGTTAACTTAATTTTTAAAGAAATATCTATTAAACGTAGAAGCTAGCAAGTTTCTCTGTTGGATACTCTATTAATTGGCTGGTCGTTCGTTTCTTCTCATTTATTTGTTCATATTTTTACATTCTTCAGTCCTGTTGACTTCCTGGTGAAATTTCTCTCTGGGAACTCTATCCATTTGTTGGACATTTATTATTCGGTTTCTTCTCATGTATTTGTTCATGTTGTTACACTTTTCAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTGGTAAGGAAGTTTTTGAATTGTTTAGTGTGTAACTCGGACACCCATGATTTGGCTGAAGATTTACTCTTGTTCTCATTCCCCACCCGCCCTAACAGATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGGGTATTTTGTTCCAACTTTCTATTGAATTTTGAACCTATTATTTGTTCCTAGTGTAGTTGAAATCCCCAAAAACTATTTTATTGAGCCAAGTGTATCAGAAACAGCCTCCTAGCTCACCAAATTCAGGTCTGCATACACGCAGCCTCCCCAGAACTACTTGTACTTCAGTTGAAATGGATCCATGTACCTAGTTCAGGTTCAAAGGGTGAATTCTAATCTATGTTGCTCAGACTTTCCAAAAATGCTGCCGTAGACGAATCCTCTAAAACTGCACTACTTTTGGAGGATTCGGCACGCACTGGTCAACTTCGTTTTAATGAGTCTGAGCATCAGAGATTTATACACCAGTACAAAATACAGCAAACTTGTAGTAGTACCTTTTATTTCTATTTTGTATAATATTCGTGTGAGATTAGGTTGAATGGAACGATCTCATCAATGAGGATTCATATAGCCCACTCCAACTTGTTTGGGGTCGAGGCATTGTTGTTGTTGCTGTTTTCAATGGAATCTATAACGGAACGAGTACTTTTGCAGGTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGCAAAGTTTCATTTTAACATATTCTTTCGAGTTTTCGGGTGATAATGTCAGTTCACTCTTCCTTATACTGGAGAGGGAAGTTCTGATGATTCTTTCTGATGCATTAGCACAACAAATGTAACAATAGTTCACCTTGTTCCAATTATATCGGATGTCCCCTGAGAAACGAGTTGACTCTATGAATCATAATTTATTTACTAGTCGTAAAGAAGGGATTTGTTAGCTCTCGATTTTCTTGTGTAG-TGAGGATTCAAATAGTCGATCCCAACTTGCTTTGGGATTGTGGTGTAGTCCTTGTTGTGTTCTTATTCAAATGCACTCTTTTGGCCTCCAAAAGAATATTTGGTTTCACA</genome_strand>
        <mrna_strand>AGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCTGCAAAACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTCTAACTGAGGTTCCCCCAAAAG.........................................................................................GAAATTGGAGTTTTGACTCTGCTTGGAGAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTCTTCTGACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGATTCACTGGAGTCTCGAATACCCGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGCATCACCAAAAAACATTTG...............................................................................................ATCATGTTTGAAGACGGTAGTGTTGAGCACCTTGACTTGTCAAAAGAAGATTGGGGATTTTGTAACTTTGCTTAATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGACATATTCTT-ACAATCCAAAATTGCAAAGTGTCCTATAGCTTTGCTCCTGCTGTACCAAATGTGCAAAGTTTCCTTTTAACATA----TTC----TTTCGGGTGATAATGTCAGTTCACTCTTCCTTTTACTGGAGAGGGAAGTTCTGATGATTATTTCCGATGCATTAGCACAACAAATGTAACAATAGCTCACCCTGTTCCAATTATATCGGATGTCCCCTAAGAAACATGTTGACTCTGTGGATCATAATTTATTTACTAGTCGTAAAG-ATGGATTTGTTAGCTCTCGATTTTCGTGTGTAGTTGAGGATTCAAATAGCCGATCCCAACTTGC-TTGGGATTGTGGTATAGTCCTTGTTATGTTCTTATTC-AATGCACTCTTTTGGCCTCCAAAAGAATATTT-GTTTCNCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256758" ref_strand="+" ref_description="SGN-E256758 [cLEG-40-A19]">
      <seq>tggcatgccaggtagctgcgccctttcccaaagagaaagtactgctatcggcaaaacataaaaacacacaacaatttcaaactctatgtggactagagcttaaagaaaggcaacacgaggatcatgagtaatatatgtgaagctgaaacagacctactttttctgaggattctcaaactgaagttcccccaaaaggaaattggagttctgactctgctcggaaaatccagcatcctcggaattgcacaggtcaaattataagaataattcgctattctgaccagagtcctgttgattcactggagtcacgaatacctgatgtttccagttcctttggaatcataaaacagtttgacagaatcaccaaaaaacatttgatcatgtttgaagacggtagtactgagcaccttgacttgtcaaaagaagattggcgattttgtaactttgcttaatcgggtcttaaactgtcgaaataaagatatacatgattcaacctcagtagctgatacgcgatatattcttaacagtccaaaattgcaaagtatcctttgcctttgctcctgctgtaccaaatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="5699" stop="10353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5999" g_stop="6057" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6058" i_stop="6571" i_length="514">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6572" g_stop="6679" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="167" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6680" i_stop="7709" i_length="1030">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7710" g_stop="7737" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="195" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7827" g_stop="7917" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="286" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7918" i_stop="9129" i_length="1212">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9130" g_stop="9220" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="377" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9221" i_stop="9315" i_length="95">
            <donor d_prob="0.195" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9316" g_stop="9394" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="456" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9395" i_stop="9931" i_length="537">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9932" g_stop="10053" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="578" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E256758" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5999" e_stop="6057"/>
          <exon e_start="6572" e_stop="6679"/>
          <exon e_start="7710" e_stop="7737"/>
          <exon e_start="7827" e_stop="7917"/>
          <exon e_start="9130" e_stop="9220"/>
          <exon e_start="9316" e_stop="9394"/>
          <exon e_start="9932" e_stop="10053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAGGTATGTCGGTCTGTACGGGTGCATATTCTTTTTGTTAACATAGGCACTCTTGCATTTTCCATTGGCAAGTAATGGAAAATCAGCAAGTTCTTGTTCTATGAAAAATTTGTGATTGAGTTACCAATTATATTTAATATATATGTTATCTTTATTGTTGTTTTCTATTACTACTATCTTATGGTTTCACTTTCAGTAATCTTGGAGTCTTGTTTTAAAAATAAACAATAATAATAGGATCTTTTAAAAGTTTATAGATTGAGGTTCAAAACTTGTATATTTTGATCCCATGACCGTTTCTGTAGTGTAATTAAGTACACAAAATCTTGAACTAGAATAGTTCTATAGATTGAACTTATGTTTTATGTGCAGAACAGATAATGCATTATAGCTAGAGACAGTTATATAAGTTTTGGCCATGTCTGAGTAAAAGATATTTCCTTTTGGTCACCTAATGCTGTTCTGTCTATTAGGAAAGGGAGAAAGATTGCGAGCTTCCATACATGCTCCAGTTTTTCTCCATTCTAGTCATAAATCATCTGTCTGTGTACATATGCCTGAGAAAGTGCATTTAGAAAGGAATCAAATCACTTAGACATCTAATATATGTAGCCTAAATTTGAGCTTTGGCGGTTGGAGTATAGTATTTTAGCTTCCACTTTCATAATGTTTAGCTTTTTCTTTTAACTTTGAAGTATTTCTTAGTTCTCTAGGAAGTTTATTCAAACCTCAGATTTCAATTTTATATGCTGAGATATTTTCACGAAACCTTCTATTTATTTCTATTCATAGAGTAATTAGAAATTTGTTTCACATGTGGTCTCCATGGTTTCTTTTCACATAGCATCTCTTTTTTAAGTTCTCTTTGTAACTTTTTCTTATCTAATCCTCAGGTTCGTACTAAACATTCTTTGCATTAGGAATTGTCTACTAACTTTATATGCGTGTGGTAACCAAGTATGAAAGTGATGTCAATCTTGTTAACTTAATTTTTAAAGAAATATCTATTAAACGTAGAAGCTAGCAAGTTTCTCTGTTGGATACTCTATTAATTGGCTGGTCGTTCGTTTCTTCTCATTTATTTGTTCATATTTTTACATTCTTCAGTCCTGTTGACTTCCTGGTGAAATTTCTCTCTGGGAACTCTATCCATTTGTTGGACATTTATTATTCGGTTTCTTCTCATGTATTTGTTCATGTTGTTACACTTTTCAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTGGTAAGGAAGTTTTTGAATTGTTTAGTGTGTAACTCGGACACCCATGATTTGGCTGAAGATTTACTCTTGTTCTCATTCCCCACCCGCCCTAACAGATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGGGTATTTTGTTCCAACTTTCTATTGAATTTTGAACCTATTATTTGTTCCTAGTGTAGTTGAAATCCCCAAAAACTATTTTATTGAGCCAAGTGTATCAGAAACAGCCTCCTAGCTCACCAAATTCAGGTCTGCATACACGCAGCCTCCCCAGAACTACTTGTACTTCAGTTGAAATGGATCCATGTACCTAGTTCAGGTTCAAAGGGTGAATTCTAATCTATGTTGCTCAGACTTTCCAAAAATGCTGCCGTAGACGAATCCTCTAAAACTGCACTACTTTTGGAGGATTCGGCACGCACTGGTCAACTTCGTTTTAATGAGTCTGAGCATCAGAGATTTATACACCAGTACAAAATACAGCAAACTTGTAGTAGTACCTTTTATTTCTATTTTGTATAATATTCGTGTGAGATTAGGTTGAATGGAACGATCTCATCAATGAGGATTCATATAGCCCACTCCAACTTGTTTGGGGTCGAGGCATTGTTGTTGTTGCTGTTTTCAATGGAATCTATAACGGAACGAGTACTTTTGCAGGTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGC</genome_strand>
        <mrna_strand>TGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAAACTGAAGTTCCCCCAAAAG.........................................................................................GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG...............................................................................................ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTTTGCCTTTGCTCCTGCTGTACCAAATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264735" ref_strand="+" ref_description="SGN-E264735 [cLEG-71-I7]">
      <seq>tggcatgccaggtagctgcgccctttcccaaagagaaagtactgctatcggcaaaacataaaaacacacaacaatttcaaactctatgtggactagagcttaaagaaaggcaacacgaggatcatgagtaatatatgtgaagctgaaacagacctactttttctgaggattctcaaactgaagttcccccaaaaggaaattggagttctgactctgctcggaaaatccagcatcctcggaattgcacaggtcaaattataagaataattcgctattctgaccagagtcctgttgattcactggagtcacgaatacctgatgtttccagttcctttggaatcataaaacagtttgacagaatcaccaaaaaacatttgatcatgtttgaagacggtagtactgagcaccttgacttgtcaaaagaagattggcgattttgtaactttgcttaatcgggtcttaaactgtcgaaataaagatatacatgattcaacctcagtagctgatacgcgatatattctttacagtccaaaattgcaaagtatcctctgcctttgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="5699" stop="10336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5999" g_stop="6057" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6058" i_stop="6571" i_length="514">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6572" g_stop="6679" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="167" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6680" i_stop="7709" i_length="1030">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7710" g_stop="7737" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="195" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7827" g_stop="7917" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="286" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7918" i_stop="9129" i_length="1212">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9130" g_stop="9220" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="377" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9221" i_stop="9315" i_length="95">
            <donor d_prob="0.195" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9316" g_stop="9394" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="456" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9395" i_stop="9931" i_length="537">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9932" g_stop="10036" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="561" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E264735" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5999" e_stop="6057"/>
          <exon e_start="6572" e_stop="6679"/>
          <exon e_start="7710" e_stop="7737"/>
          <exon e_start="7827" e_stop="7917"/>
          <exon e_start="9130" e_stop="9220"/>
          <exon e_start="9316" e_stop="9394"/>
          <exon e_start="9932" e_stop="10036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAGGTATGTCGGTCTGTACGGGTGCATATTCTTTTTGTTAACATAGGCACTCTTGCATTTTCCATTGGCAAGTAATGGAAAATCAGCAAGTTCTTGTTCTATGAAAAATTTGTGATTGAGTTACCAATTATATTTAATATATATGTTATCTTTATTGTTGTTTTCTATTACTACTATCTTATGGTTTCACTTTCAGTAATCTTGGAGTCTTGTTTTAAAAATAAACAATAATAATAGGATCTTTTAAAAGTTTATAGATTGAGGTTCAAAACTTGTATATTTTGATCCCATGACCGTTTCTGTAGTGTAATTAAGTACACAAAATCTTGAACTAGAATAGTTCTATAGATTGAACTTATGTTTTATGTGCAGAACAGATAATGCATTATAGCTAGAGACAGTTATATAAGTTTTGGCCATGTCTGAGTAAAAGATATTTCCTTTTGGTCACCTAATGCTGTTCTGTCTATTAGGAAAGGGAGAAAGATTGCGAGCTTCCATACATGCTCCAGTTTTTCTCCATTCTAGTCATAAATCATCTGTCTGTGTACATATGCCTGAGAAAGTGCATTTAGAAAGGAATCAAATCACTTAGACATCTAATATATGTAGCCTAAATTTGAGCTTTGGCGGTTGGAGTATAGTATTTTAGCTTCCACTTTCATAATGTTTAGCTTTTTCTTTTAACTTTGAAGTATTTCTTAGTTCTCTAGGAAGTTTATTCAAACCTCAGATTTCAATTTTATATGCTGAGATATTTTCACGAAACCTTCTATTTATTTCTATTCATAGAGTAATTAGAAATTTGTTTCACATGTGGTCTCCATGGTTTCTTTTCACATAGCATCTCTTTTTTAAGTTCTCTTTGTAACTTTTTCTTATCTAATCCTCAGGTTCGTACTAAACATTCTTTGCATTAGGAATTGTCTACTAACTTTATATGCGTGTGGTAACCAAGTATGAAAGTGATGTCAATCTTGTTAACTTAATTTTTAAAGAAATATCTATTAAACGTAGAAGCTAGCAAGTTTCTCTGTTGGATACTCTATTAATTGGCTGGTCGTTCGTTTCTTCTCATTTATTTGTTCATATTTTTACATTCTTCAGTCCTGTTGACTTCCTGGTGAAATTTCTCTCTGGGAACTCTATCCATTTGTTGGACATTTATTATTCGGTTTCTTCTCATGTATTTGTTCATGTTGTTACACTTTTCAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTGGTAAGGAAGTTTTTGAATTGTTTAGTGTGTAACTCGGACACCCATGATTTGGCTGAAGATTTACTCTTGTTCTCATTCCCCACCCGCCCTAACAGATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGGGTATTTTGTTCCAACTTTCTATTGAATTTTGAACCTATTATTTGTTCCTAGTGTAGTTGAAATCCCCAAAAACTATTTTATTGAGCCAAGTGTATCAGAAACAGCCTCCTAGCTCACCAAATTCAGGTCTGCATACACGCAGCCTCCCCAGAACTACTTGTACTTCAGTTGAAATGGATCCATGTACCTAGTTCAGGTTCAAAGGGTGAATTCTAATCTATGTTGCTCAGACTTTCCAAAAATGCTGCCGTAGACGAATCCTCTAAAACTGCACTACTTTTGGAGGATTCGGCACGCACTGGTCAACTTCGTTTTAATGAGTCTGAGCATCAGAGATTTATACACCAGTACAAAATACAGCAAACTTGTAGTAGTACCTTTTATTTCTATTTTGTATAATATTCGTGTGAGATTAGGTTGAATGGAACGATCTCATCAATGAGGATTCATATAGCCCACTCCAACTTGTTTGGGGTCGAGGCATTGTTGTTGTTGCTGTTTTCAATGGAATCTATAACGGAACGAGTACTTTTGCAGGTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCC</genome_strand>
        <mrna_strand>TGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAAACTGAAGTTCCCCCAAAAG.........................................................................................GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG...............................................................................................ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTTACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258640" ref_strand="+" ref_description="SGN-E258640 [cLEG-50-A8]">
      <seq>gcatgccaggtagctgcgccctttcccaaagagaaagtactgctatcggcaaaacataaaaacacacaacaatttcaaactctatgtggactagagcttaaagaaaggcaacacgaggatcatgagtaatatatgtgaagctgaaacagacctactttttctgaggattctcaaactgaagttcccccaaaaggaaattggagttctgactctgctcggaaaatccagcatcctcggaattgcacaggtcaaattataagaataattcgctattctgaccagagtcctgttgattcactggagtcacgaatacctgatgtttccagttcctttggaatcataaaacagtttgacagaatcaccaaaaaacatttgatcatgtttgaagacggtagtactgagcaccttgacttgtcaaaagaagattggcgattttgtaactttgcttaatcgggtctttaactgtcgaaataagatatacatgatttcacctcagtagctgatacgcgatatattcttaacagtccaaaatttgcaagtatcctctgcctttgctcctgctgtacaaatgtgcaaagtttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="5701" stop="10365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6001" g_stop="6057" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6058" i_stop="6571" i_length="514">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6572" g_stop="6679" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="165" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6680" i_stop="7709" i_length="1030">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7710" g_stop="7737" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="193" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7827" g_stop="7917" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="284" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7918" i_stop="9129" i_length="1212">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9130" g_stop="9220" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="375" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9221" i_stop="9315" i_length="95">
            <donor d_prob="0.195" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9316" g_stop="9394" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="454" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9395" i_stop="9931" i_length="537">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9932" g_stop="10065" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="586" r_length="132" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E258640" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6001" e_stop="6057"/>
          <exon e_start="6572" e_stop="6679"/>
          <exon e_start="7710" e_stop="7737"/>
          <exon e_start="7827" e_stop="7917"/>
          <exon e_start="9130" e_stop="9220"/>
          <exon e_start="9316" e_stop="9394"/>
          <exon e_start="9932" e_stop="10065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAGGTATGTCGGTCTGTACGGGTGCATATTCTTTTTGTTAACATAGGCACTCTTGCATTTTCCATTGGCAAGTAATGGAAAATCAGCAAGTTCTTGTTCTATGAAAAATTTGTGATTGAGTTACCAATTATATTTAATATATATGTTATCTTTATTGTTGTTTTCTATTACTACTATCTTATGGTTTCACTTTCAGTAATCTTGGAGTCTTGTTTTAAAAATAAACAATAATAATAGGATCTTTTAAAAGTTTATAGATTGAGGTTCAAAACTTGTATATTTTGATCCCATGACCGTTTCTGTAGTGTAATTAAGTACACAAAATCTTGAACTAGAATAGTTCTATAGATTGAACTTATGTTTTATGTGCAGAACAGATAATGCATTATAGCTAGAGACAGTTATATAAGTTTTGGCCATGTCTGAGTAAAAGATATTTCCTTTTGGTCACCTAATGCTGTTCTGTCTATTAGGAAAGGGAGAAAGATTGCGAGCTTCCATACATGCTCCAGTTTTTCTCCATTCTAGTCATAAATCATCTGTCTGTGTACATATGCCTGAGAAAGTGCATTTAGAAAGGAATCAAATCACTTAGACATCTAATATATGTAGCCTAAATTTGAGCTTTGGCGGTTGGAGTATAGTATTTTAGCTTCCACTTTCATAATGTTTAGCTTTTTCTTTTAACTTTGAAGTATTTCTTAGTTCTCTAGGAAGTTTATTCAAACCTCAGATTTCAATTTTATATGCTGAGATATTTTCACGAAACCTTCTATTTATTTCTATTCATAGAGTAATTAGAAATTTGTTTCACATGTGGTCTCCATGGTTTCTTTTCACATAGCATCTCTTTTTTAAGTTCTCTTTGTAACTTTTTCTTATCTAATCCTCAGGTTCGTACTAAACATTCTTTGCATTAGGAATTGTCTACTAACTTTATATGCGTGTGGTAACCAAGTATGAAAGTGATGTCAATCTTGTTAACTTAATTTTTAAAGAAATATCTATTAAACGTAGAAGCTAGCAAGTTTCTCTGTTGGATACTCTATTAATTGGCTGGTCGTTCGTTTCTTCTCATTTATTTGTTCATATTTTTACATTCTTCAGTCCTGTTGACTTCCTGGTGAAATTTCTCTCTGGGAACTCTATCCATTTGTTGGACATTTATTATTCGGTTTCTTCTCATGTATTTGTTCATGTTGTTACACTTTTCAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTGGTAAGGAAGTTTTTGAATTGTTTAGTGTGTAACTCGGACACCCATGATTTGGCTGAAGATTTACTCTTGTTCTCATTCCCCACCCGCCCTAACAGATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGGGTATTTTGTTCCAACTTTCTATTGAATTTTGAACCTATTATTTGTTCCTAGTGTAGTTGAAATCCCCAAAAACTATTTTATTGAGCCAAGTGTATCAGAAACAGCCTCCTAGCTCACCAAATTCAGGTCTGCATACACGCAGCCTCCCCAGAACTACTTGTACTTCAGTTGAAATGGATCCATGTACCTAGTTCAGGTTCAAAGGGTGAATTCTAATCTATGTTGCTCAGACTTTCCAAAAATGCTGCCGTAGACGAATCCTCTAAAACTGCACTACTTTTGGAGGATTCGGCACGCACTGGTCAACTTCGTTTTAATGAGTCTGAGCATCAGAGATTTATACACCAGTACAAAATACAGCAAACTTGTAGTAGTACCTTTTATTTCTATTTTGTATAATATTCGTGTGAGATTAGGTTGAATGGAACGATCTCATCAATGAGGATTCATATAGCCCACTCCAACTTGTTTGGGGTCGAGGCATTGTTGTTGTTGCTGTTTTCAATGGAATCTATAACGGAACGAGTACTTTTGCAGGTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGCAAAGTTTCATTT</genome_strand>
        <mrna_strand>GCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAAACTGAAGTTCCCCCAAAAG.........................................................................................GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG...............................................................................................ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTAACTGTCGAAAT-AAGATATACATGATTTCACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTTGCAAGTATCCTCTGCCTTTGCTCCTGCTGTA-CAAATGTGCAAAGTTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729816" ref_strand="+" ref_description="SGN-E729816 [LA22AG10]">
      <seq>cataatttcactttcttcagtgcaaattcgaatttgaatttcaatggcgacactttcatggaggcaccatacactaattcaagctctactctctcgtggtccgcttaaagagaaggattttcaatctatattcaccagaatcatcgacaaatcctcaggtaatcatcagtcactattcaatgaatacctgagaaagataaacggagagctcgcttatgtgcagttagagctacgggcatgtagaaaccagtatgacggacatgtgcattatggtgttgtgaacaatgtttcagatgagtcatccaaacttggtactaaatattcagttccccagatagctttctataaaggcattattgaagcaattgttcaagacgcagcagctcagggatttatatcgaccattgatgcactgaacatacggctcgaaaatcagtttctagctggaacagaatcccagtctcagagaggtcatattcctgcagcgtttagaaatttttcaatgtctcaaaaggagaggacccttgaggaacttgcgagggaccgctggctttctctaacagatggtaagataggactaggagttcgttcgttccttgatctcagaagttggtttcgcagtaatgaggttccagcatgtgaagtttgcaatgaagctgctgtgaaggctgagctttgcaaaaatgaaggctgtaatgttcgtatgcatatgtactgtctgagaatgaagttctccaaaagcaaggctgagaaagtttgtcccggttgtgggacaagatggcattacaacattgcaaaagtagaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="11392" stop="15850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11692" g_stop="11849" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11850" i_stop="12634" i_length="785">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12635" g_stop="12831" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="355" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12832" i_stop="14288" i_length="1457">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14289" g_stop="14369" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="436" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14370" i_stop="14495" i_length="126">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14496" g_stop="14726" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="667" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14727" i_stop="14941" i_length="215">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14942" g_stop="15019" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="745" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15020" i_stop="15487" i_length="468">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15488" g_stop="15550" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="808" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E729816" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11692" e_stop="11849"/>
          <exon e_start="12635" e_stop="12831"/>
          <exon e_start="14289" e_stop="14369"/>
          <exon e_start="14496" e_stop="14726"/>
          <exon e_start="14942" e_stop="15019"/>
          <exon e_start="15488" e_stop="15550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATTTCACTTTCTTCAGTGCAAATTCGAATTTGAATTTCAATGGCGACACTTTCATGGAGGCACCATACACTAATTCAAGCTCTACTCTCTCGTGGTCCGCTTAAAGAGAAGGATTTTCAATCTATATTCACCAGAATCATCGACAAATCCTCAGGTTTTTGTGGTTTTTTTTGATTTTTTTTTTCGCGTATTAGATTGATTGTTTTTCGGTGTTTTGAGTTTAGTTCCAAGTACCCAAGTGCTAGTTTAGTTTATTCTGATCATTGCATTGGATTTTTTTTAACTTAGTTGTGGAATTTTGGTTTTAGTATTTGTGTTGTTGTTGAGTTTTTGTTTAGATATTTGGGGATTGGGGATTACAGTATCATTTTCAAGGACCATTTACATGTTTAATCATTTTCGTCTTTGTGTTGTTGGATTTTTACTTTGATATGTTTGTTTTCTAGCATAAGATTTAACTATCTCGTGGGCTATTCTCGAAGAAAGGAGGAGGAATTATGGCTTGTTGTTTGTGGAGAAGGGTTGAGCTGAGTAAATCTGGCTTATTATGAAAGAAATTATAACTATGGATTGATTACTGAAAGTTTTAGCTTAATGGATACATATTGTTTGTTCTCGAAAATTCGTTTATTTGTATGTTTTGGTGAATCAATAGGGATAATTGCTCTGTGTTTTGGAGGAAAGGCAAATCCTTTTTGAGCTTTAGTTAGTTTTCCGTTTCCCGTTTGGTTCGTAACTCGTAAGGCAGGAATCAAGTGTTTAATGATTCTGATTTGGAATTTTTGTTCTTTTCTTTGGATACAAGTATCATCATGTGATTGTCTGTTTAGTTTTCTAATTAGCATGTTAAAATTTGACTGGACTAAATAAATAAAATATTGTTTGGTATCTGTGTGAAAACATATTTGTTTCTGAAACTAATTTATGTCTATAATTCAGGTAATCATCAGTCACTATTCAATGAATACCTGAGAAAGATAAACGGAGAGCTCGCTTATGTGCAGTTAGAGCTACGGGCATGTAGAAACCAGTATGACGGACATGTGCATTATGGTGTTGTGAACAATGTTTCAGATGAGTCATCCAAACTTGGTACTAAATATTCAGTTCCCCAGATAGCTTTCTATAAAGGCATTGTGAGTTTTTCCTCCCTTTCTTTTGAACTGTGTCGAGAATGTCCGTAGTTGTTATATAGCCATCCTGTGTCCATATGAGGAAGTATCTTCATATTCTTTTGTCTTGCTTTGTGAGAGGGAATAGGATGTAAAATGAAAATCTTCATTAGTCTATGGAATAGAGAACAAGAACTAATAAGGTTGCATTAAACAGAACTGCTGAATGCTACTTTTCTTTTGCCTCCTTACCTCAACTCAACGATGACATTGCTGCATATCTTAGCTGGCAGTTCCACAGAAAGGAGCAAAAACTGTTTACTCTTCTTCCTTTCCTAGTCTGAGCTTGAAAGAAGATCTACATGCTATTAGTCCTCTAAAACATAAAACTTCATGCTTAATCTTCATAGTAATGAATTGCGTATAAACTTGCAACTTATGTAATGAATTTGATATGGGAATAGAGCAGCTGATGCTGTTCAAGTTATAGTACAAACATGATCATCCATCTTCTAGGATTAGTACTAACAACAACATACCTGGTGTAATCCCACAAGTGGGATCAGGAGAGGATGGTGTGTACACAACCTTACCCCTACCTTGTAGAGGTAGATAGGTTGTTTCCACTAGATCCTCGGCTCAAGTAAAGCATATCAAAATCTAAGTATGAAAAGTAAATATAGTAGTGAATAAGTGCTGAAAATAATGGAGAAAAGAACAGTAGCAACACAAATAATACAATATTTGAAGAAAAGAACACAGGTAATAGAAAGCATAACCACTAAGTTCAGTTAAATTAGAGTATTTTGGAGCTGACTTATGCAATCTAGTTTTATACAAAATAATATTCAGGAGTCCCATTTTAAATCAAAAGTTGAAGTTGGTCGATCTATTTCATATTAGCTCAAAATGTGGTTAGGGGAAAAGATTTGGTAGGCTTTTTTCACTTCTTTCTAATCTTGCTTGCTTTTTTTTTTTTTTTGGGAGAACGAATTGTTTGCTTCCCTTTTGTACTACGAATTTAAACTCACTTACTGTTGTAAAGGGGAGAGTCAAATAATTGAAATTTGTTGGTTTCAGTAATTGATGTTTTCTCTAATCGACTAAGTCTCAGTCCTCAACTAGTTGGGATTTACTATATGAATTTTCCATTCATCTGTGCGTTCTTCTCTATTCAGGCCCATTTCATTCAATTATTGAGTAAATTGCATACTTTGAGGTAACTTGGGGTCTCTACAATTGAAGGTTCTCATAATTCCACTCTTATTCCAACAGTTACATAGAATTTCCTAATGAGAATAAAAAGGATCCTGAAAACGTTGGGCTTAATGTATCTGTACAAAATTACCAAGTTTTACTTATATTATGTCCTTAGCTTAGACTGGTTAGTGTTTCTTAAAGAAAAATAATATGAATATATGAAGATCATTTCCTGACATAAATTTTTTAATGAGATTTATATGGTTACTGTTTAAGTGCAGATTGAAGCAATTGTTCAAGACGCAGCAGCTCAGGGATTTATATCGACCATTGATGCACTGAACATACGGCTCGAAAATCAGGTTTCTTACTTCTTAACGATAAATGGTGGATGTGGTTCTGGATTAAAAAAGATCTGTATAAACTTTGTAAATTTGCTTGTTGTTAGATCAGAGTTGTAATTATAATTACTTTGCTTCGGTCAACAGTTTCTAGCTGGAACAGAATCCCAGTCTCAGAGAGGTCATATTCCTGCAGCGTTTAGAAATTTTTCAATGTCTCAAAAGGAGAGGACCCTTGAGGAACTTGCGAGGGACCGCTGGCTTTCTCTAACAGATGGTAAGATAGGACTAGGAGTTCGTTCGTTCCTTGATCTCAGAAGTTGGTTTCGCAGTAATGAGGTTCCAGCATGTGAAGTTTGCAATGAAGCTGCTGTGAAGGTCTATTCTTCTCTTTAACTCCATGTTCACTATAGTAAGAATTTTGCCTTTAAAATTGGATAACTTTTTAGCTGTAAACTCACATGGTCTTCCTATATACTGTGCTTTGGTTTGATAATGTCACTGCAAACATCAGAAAGATGTTTATGTGTCTATGATAAACTATATGGCTGCTAAGTCATCCTATACTCATGGTGGTATGATTATTTGACCAGGCTGAGCTTTGCAAAAATGAAGGCTGTAATGTTCGTATGCATATGTACTGTCTGAGAATGAAGTTCTCCAAAAGCAAGGTATTCTTCTCTCCTAGTGTAACTTTCCATAAATTTCCCATTTGTCACTCAATGACTGAATCTTGCCCTTTTCTTTTTAGCATCAACGAATTTAATTATATATATGTTTTCCAATCTTTTGATGTTGAATCCTCTACCATAATAGTTGCATTCGTATTAGTGTCCATGATACTTGTTTAATCCTAGACTTATAAACAGAAGAATGTGAACCCCCTCTTAGTCACAAGAGATGAGATTATTCTGGATTTGCACATTATAGATGTTATTAACTAAATTTGCCCGACGTATAGGCAATCAAGAAAGCCGTATAATTGAACATATATATAAGCTAGATAAAAGTGAGCTAATCCAACTATCCAACCAATCATGTTATATTTCAAAGGGAAAACACTGTAAAGTTGATGATGAACACTCTCATCTATGCAGGCGATTGATGAACTAAATTCTTGTTGAAACCATAATTTGCAGGCTGAGAAAGTTTGTCCCGGTTGTGGGACAAGATGGCATTACAACATTGCAAAAGTAGAAGCT</genome_strand>
        <mrna_strand>CATAATTTCACTTTCTTCAGTGCAAATTCGAATTTGAATTTCAATGGCGACACTTTCATGGAGGCACCATACACTAATTCAAGCTCTACTCTCTCGTGGTCCGCTTAAAGAGAAGGATTTTCAATCTATATTCACCAGAATCATCGACAAATCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCATCAGTCACTATTCAATGAATACCTGAGAAAGATAAACGGAGAGCTCGCTTATGTGCAGTTAGAGCTACGGGCATGTAGAAACCAGTATGACGGACATGTGCATTATGGTGTTGTGAACAATGTTTCAGATGAGTCATCCAAACTTGGTACTAAATATTCAGTTCCCCAGATAGCTTTCTATAAAGGCATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGCAATTGTTCAAGACGCAGCAGCTCAGGGATTTATATCGACCATTGATGCACTGAACATACGGCTCGAAAATCAG..............................................................................................................................TTTCTAGCTGGAACAGAATCCCAGTCTCAGAGAGGTCATATTCCTGCAGCGTTTAGAAATTTTTCAATGTCTCAAAAGGAGAGGACCCTTGAGGAACTTGCGAGGGACCGCTGGCTTTCTCTAACAGATGGTAAGATAGGACTAGGAGTTCGTTCGTTCCTTGATCTCAGAAGTTGGTTTCGCAGTAATGAGGTTCCAGCATGTGAAGTTTGCAATGAAGCTGCTGTGAAG.......................................................................................................................................................................................................................GCTGAGCTTTGCAAAAATGAAGGCTGTAATGTTCGTATGCATATGTACTGTCTGAGAATGAAGTTCTCCAAAAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGTTTGTCCCGGTTGTGGGACAAGATGGCATTACAACATTGCAAAAGTAGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345168" ref_strand="+" ref_description="SGN-E345168 [cTOF-22-N4]">
      <seq>ttcattataagtgcataacttttcactttattgtttgagcattgtgttgatttctctaaacttgtttttcgttgaacaagattgttttttcatatactcatggaaagcaacaccgtgctcagaagttagagtgaaatgttatgcatttgtgattatatattttcttggctagagttgtattgccaagtgaagtgttttaattgatttgaaccttcgagtgagttgcttcgtgatcttcttatgccttagcttcagaacttaccactatatcatcaattctcgaagagtgtggcctacctgaatgctctcactaaactattcagactgttgtaaatctctactgttgaggctttatttttggcagttcttaaatgtgtatcttaagttttgtaattaatttatgtttgtttagtatatctctgttgttacccctttgtaatcttttggattcaatgantgaagttggtttggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="17506" stop="16432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17206" g_stop="16726" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E345168" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17206" e_stop="16726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTATAAGTGCATAACTTTTCACTTTATTGTTTGAGCATTGTGTTGATTTCTCTAAACTTGTTTTTCGTTGAACAAGATTGTTTTTTCATATACTCATGGAAAGCAACACCGTGCTCAGAAGTTAGAGTGAAATGTTATGCATTTGTGATTATATATTTTCTTGGCTAGAGTTGTATTGCCAAGTGAAGTGTTTTAATTGATTTGAACCTTCGAGTGAGTTGCTTCGTGATCTTCTTATGCCTTAGCTTCAGAACTTACCACTATATCATCAATTCTCGAAGAGTGTGGCCTACCTGAATGCTCTCACTAAACTATTCAGACTGTTGTAAATCTCTACTGTTGAGGCTTTATTTTTGGCAGTTCTTAAATGTGTATCTTAAGTTTTGTAATTAATTTATGTTTGTTTAGTATATCTCTGTTGTTACCCCTTTGTAATCTTTTGGATTCAATGA-TGAAGTTGGTTTGGAAATATTGTAG</genome_strand>
        <mrna_strand>TTCATTATAAGTGCATAACTTTTCACTTTATTGTTTGAGCATTGTGTTGATTTCTCTAAACTTGTTTTTCGTTGAACAAGATTGTTTTTTCATATACTCATGGAAAGCAACACCGTGCTCAGAAGTTAGAGTGAAATGTTATGCATTTGTGATTATATATTTTCTTGGCTAGAGTTGTATTGCCAAGTGAAGTGTTTTAATTGATTTGAACCTTCGAGTGAGTTGCTTCGTGATCTTCTTATGCCTTAGCTTCAGAACTTACCACTATATCATCAATTCTCGAAGAGTGTGGCCTACCTGAATGCTCTCACTAAACTATTCAGACTGTTGTAAATCTCTACTGTTGAGGCTTTATTTTTGGCAGTTCTTAAATGTGTATCTTAAGTTTTGTAATTAATTTATGTTTGTTTAGTATATCTCTGTTGTTACCCCTTTGTAATCTTTTGGATTCAATGANTGAAGTTGGTTTGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317664" ref_strand="+" ref_description="SGN-E317664 [cTOB-8-E7]">
      <seq>tgttaccgcgccggctgcggcatctctgccacccaattccgccgtcatcgacgtttgtgccacggcggtggtttcatctatagctttgtacactgaaaaattactgattttgaattttcgatgatacccagatggaagaaacatagcaaagaatggtttttgtggatcagatctgtattcatcaaatgatggtattttccatgttaagaatctcgaagccaatcgattgaagactagtgctcgaaaaagttatgacgttgctggatggaatcagaagataaaaacttattgttcgtttgaaggaaatggcactatgcctctccctaaaatgtttaatagattgtacgaccagggcatgtggaagacgagctgctttcttatatcacaatgatcagtcttcggaaattgatgatatagtggtttggaagacgaggcaaaaaaagcttacgaagcaacctagttgaatgttcaaatcaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="19833" stop="16947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19533" g_stop="19342" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19341" i_stop="17537" i_length="1805">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17536" g_stop="17247" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="481" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E317664" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19533" e_stop="19342"/>
          <exon e_start="17536" e_stop="17247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACCGCCGCCGGCTGCGGCATCTCTGCCACCCAATTCCGCCGTCATCGACGTTTGTGCCACGGCGGTGGTTTCATCTATAGCTTTGTACACTGAAAAATTACTGATTTTGAATTTTCGATGATACCCAGATGGAAGAAACATAGCAAAGAATGGTTTTTGTGGATCAGATCTGTATTCATCAAATGATGGTATGAGCTCTTTACAAAGTTTTACTAGTTGTCGTGTTTTTTTTTACTGTCGTTTTGATTGATTTGATGTGATTGAGCTTAGCTTGGAGTGTCGTTTTTTCTTTTCATAACTATTTGATTTGATTGATTTGGTGTACTTGAGCTTAGTTTAGAGATACGTGTAAGATTTGCGTATATTTTATACACAAACTATTTGATTTGGTGTACTTGAGCTTGGAGGTTCGTGTAAGATTTGCGTATACTTTCTACGCATTGGACCCGTTGTGTGATTCTATTGGATATGTTGTTGTTGTTGTTGTTAATTAGGGATTTTTTAGTTTGTGCATTTTGTACTATGATTTTTTGTTTTTTTAGTTGGTTCTGAATAAATTATTTATATATACTGAATGAATTTTTTTCGACACTAATATGGAATTTGAACTAAAAGTATACTAGGTTTTGATATTCTTATTAGCTGATGTGTGGGTAAGGTTTGCGTTAACTCTATACAGACCCCATTTGTGCGAGTTCATTGGATATGTTGTTGTTGCGTGGACTCTATGCTCATCGGACCCCATTTGTGTGAGTTCATTGGGTATGTTGTTGTTACACGAGGCAGAATCAGAACTCATTTAAGCATGGTTCATAGTGTTTGAAACATTATGGAGATGTTTAATTATCTTGAGATATGCTTTGGTTGTTTGTGCAAAACTTTGAAGTTTCGTCAAATTACATGAACTTTGTTTTGTGTCTCACACAACTGATGTAAGTTGTGTGAGGTCTCTTTTTGTTTTACAAGTCAGTGCGACCCAAATCGTTGGACTCACCAACTCGTGAAATAAAAAGAAGTCTCACGCAACTTGCGTTAATTCTGTGAGTCGCAAAGTAAATTTTCAAATCCTCTCTTCATATATTTCTTGCACATTCCAACTATTCTACTTATAAGATCATAAGAAACTGAGACTTCCAAAATATGTGTTCTTAACACTAATTTGAGTCCCTTTTCTAATTTAAAAAAAGGGCAAATAGCAATTTTGGCCTCAATGTTGTAGGTTTATTTCAATTTGGTCCTTGTTTAATTTAACTAAGCATAATTAATTGTCAATTAATATGAAATGCTTAGTTGAATTATATAAGGGCCAAAATCGGAATAAACATATAATATAAGGACTAAAACTGCTATTTGCCCATTTAAAAAAGACCAACAAGTCTTTTTCAATTTAAGGACCCTAAAAACTACACTATTTCTGGTTCAATTTGTTTGCCCTACTTTACTTTTAAAGTAAAGTAAAGTGAGACGAACAAATTGAATCAGAGAGAGTATAGTTTTTAGTTCGGTTCAAAAAAAGTATCTCCTTCCTTTTTGACAACTATTATGTTCCAACTTTCCACGTGACATGTTTAAAACCACACAATTAAAGGGTATTTTTGGCATTTGATGTATCTCTATCTGATGACCATAAGTTTCTGAAGTCATCTTTACTTAACTCTATCTCAAGTTAAAATAGGTCAAACAAATTGAAATAGAGTGAGTATTATATATTAAGAAAAAGCAATGGTATGGTTTATAAGGAACCGGTAAGGCGATAACAACCATTATATAAGCTTAATAGACTAAAATTGTTGTTATTAATTTAATCATTATGTTATGTTCTCCAAAGTTTATGAATAATTTCTGAATTGGTACTTGACTAGATGTCATTGATCTCTGTTTGCAGTGCTTTACTTGCCTTACATGTTACTTTCCATACTACAAAACTAGATTGAAGAAGAATAAGATGTTATAGTGGAGTGGAGCTTTTGATTTATTTGAATATATTTAGTAGGTATTTTCCATGTTAAGAATCTCGAAGCCAATCGATTGAAGACTAGTGCTCGAAAAAGTTATGACGTTGCTGGATGGAATCAGAAGATAAAAACTTATTGTTCGTTTGAAGGAAATGGCACTATGCCTCTCCCTAAAATGTTTAATAGATTGTACGACCAGGGCATGTGGAAGACGAGCTGCTTTCTTATATCACAATGATCAGTCTTCGGAAATTGATGATATAGTGGTTTGGAAGACGAGGCAAAAAAAGCTTACGAAGCAACCTAGTTGAATGTTCAAATCAATTGA</genome_strand>
        <mrna_strand>TGTTACCG-CGCCGGCTGCGGCATCTCTGCCACCCAATTCCGCCGTCATCGACGTTTGTGCCACGGCGGTGGTTTCATCTATAGCTTTGTACACTGAAAAATTACTGATTTTGAATTTTCGATGATACCCAGATGGAAGAAACATAGCAAAGAATGGTTTTTGTGGATCAGATCTGTATTCATCAAATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTCCATGTTAAGAATCTCGAAGCCAATCGATTGAAGACTAGTGCTCGAAAAAGTTATGACGTTGCTGGATGGAATCAGAAGATAAAAACTTATTGTTCGTTTGAAGGAAATGGCACTATGCCTCTCCCTAAAATGTTTAATAGATTGTACGACCAGGGCATGTGGAAGACGAGCTGCTTTCTTATATCACAATGATCAGTCTTCGGAAATTGATGATATAGTGGTTTGGAAGACGAGGCAAAAAAAGCTTACGAAGCAACCTAGTTGAATGTTCAAATCAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309434" ref_strand="+" ref_description="SGN-E309434 [cTOA-2-C14]">
      <seq>tcctctaagacagaatttccacaaaaaatggtgtgttgtacaaaattcacaatagcctttcaaaaaaatccaatcttttttagtatatttttttcaatttttttctatttgtacacaaacatgtgtatgtgtcacaaaaatcagtaagctataaggggggttgtatcaattataagtttaaattattatgaaattatgaggatttacatgatttgattgtgacccttttcaaatctttgactcttgttaccctttagatttgtatacttgtgaagagaaacaaacaaatggttttgttttctcagatttactgttgaaaaaacaagagcctgttttggtggacacgaaaatcaaggagaaagcttttaaagatatttggtgcatctcaaccacccactcttaccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22218" stop="23224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22518" g_stop="22924" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E309434" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22518" e_stop="22924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTT</genome_strand>
        <mrna_strand>TCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTGAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAAGATATTTGGTGCATCTCAACCACCCACTCTTACCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358611" ref_strand="+" ref_description="SGN-E358611 [cLHT-22-A19]">
      <seq>acagaatttccacaaaaaatggtgtgtggtacaaaattgacaatagcctttcaaaaaaatccaatcttttatagtatatttttttcaatttttttctatttgtatacaaacatgtgtatgtgtcacaaaaatcagtaaactataaggggggctgtatcaattataagtttaaattattatgaaattatgaggatttacatgatttgattgtgacccttttcaaatctttgactcttgttacccttagatttgtatacttgtaaggagaaacaaacaaatggttttgttttctcagatttactgttgaaaaaacaagagcctgttttggtggacacgaaaatcaaggagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttgttaagaccctttcattttctgttcttggtttttgtctttgttttccttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22227" stop="23280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22527" g_stop="22980" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E358611" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22527" e_stop="22980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTT</genome_strand>
        <mrna_strand>ACAGAATTTCCACAAAAAATGGTGTGTGGTACAAAATTGACAATAGCCTTTCAAAAAAATCCAATCTTTTATAGTATATTTTTTTCAATTTTTTTCTATTTGTATACAAACATGTGTATGTGTCACAAAAATCAGTAAACTATAAGGGGGGCTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCC-TTAGATTTGTATACTTGTAAGGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728944" ref_strand="+" ref_description="SGN-E728944 [LA19BH05]">
      <seq>acagaatttccacaaaaaatggtgtgttgtacaaaattcacaatagcctttcaaaaaaatccaatcttttttagtatatttttttaaatttttttctatttgtacacaaacatgtgtatgtgtcacaaaaatcagtaagctataaggggggttgtatcaattataagtttaaattattatgaaattatgaggatttacatgatttgattgtgacccttttcaaatctttgactcttgttaccctttagatttgtatacttgtaaagagaaacaaacaaatggttttgttttctcagatttactgtagaaaaaacaagagcctgttttggtggacacgaaaatcaaggagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttgttaagaccctttcattttctgttcttggtttaagactatgttttcctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22227" stop="23279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22527" g_stop="22979" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E728944" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22527" e_stop="22979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTT</genome_strand>
        <mrna_strand>ACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTAAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTAGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTAAGACTATGTTTTCCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398376" ref_strand="+" ref_description="SGN-E398376 [TUS-34-K16]">
      <seq>gtgttgtacaaaattcacaatagcctttcaaaaaaatccaatcttttttagtatatttttttcaatttttttctatttgtacacaaacatgtgtatgtgtcacaaaaatcagtaagctataaggggggttgtatcaattataagtttaaattattatgaaattatgacgatttacatgatttgattgtgacccttttcaaatctttgactcttgttaccctttaaatttgtatacttgtaaagagaaacaaacaaatggttttgttttctcagatttactgttgaaaaaacaaaagcctgttttggtggacacaaaaatcaaggagaaagcttttaaggatatttggtgcgtcaaaaccacccactcttacccttttgttaaaaccctttctttttctgtttcatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22250" stop="23257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22550" g_stop="22957" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E398376" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22550" e_stop="22957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTG-TTCTTGGTT</genome_strand>
        <mrna_strand>GTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGACGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAAATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAAAGCCTGTTTTGGTGGACACAAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCGTCAAAACCACCCACTCTTACCCTTTTGTTAAAACCCTTTCTTTTTCTGTTTCATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265962" ref_strand="+" ref_description="SGN-E265962 [cLEI-6-G16]">
      <seq>gttagatttgtatacttgtaaagagaaacaaacaaatggttttgttttctcagatttactgttgaaaaaacaagagcctgttttggtggacacgaaaatcaaagagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttgttaagaccctttcattttctgttcttggtttttgtctttgttttccttttttttgttgttgatgaagcctatcaagaagacccaattattggttgcttttgttgagaatgggatgagttaatctggcttttacgtacaaaatcttatcttggatcaaggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22471" stop="26991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22770" g_stop="23078" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23079" i_stop="26605" i_length="3527">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26606" g_stop="26691" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="395" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E265962" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22770" e_stop="23078"/>
          <exon e_start="26606" e_stop="26691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCAT</genome_strand>
        <mrna_strand>GTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAAGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAAGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461072" ref_strand="+" ref_description="SGN-E461072 [cPRO-34-O15]">
      <seq>gaaaaaacaagagcctgttttggtggacacgaaaatcaaggagaaagcttttaaggatatttggttcatctcaaccacccactcttacccttttgttaagaccctttaattttctgttcttggtttttgtctttgttttttttttttttggttgatgaagcctatcaggaagacccaattattggttgcttttgtagagaatgggatgagttaatcaggcttttaggatcagggccgtcaagagagctagaagatcagatttgaggaggatatatattgttgtcaacacctagtagtttatatagataccatggctcccggaggcagtaattaccaggatattggtgattcccgcagtgcatatgctgactatggtattgcaccagaaagtgctgaattcaaaaactccccctttagaaaagctgcagctgttgttggtgggaagaatggagcgggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaatggccacacattatgcgtgaagtgcaagtcaaaagtacatgtatgtcccatttgccgccatgagcttggaaacattagatgtctagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22533" stop="28778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22833" g_stop="23060" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23061" i_stop="26605" i_length="3545">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26606" g_stop="26908" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="529" r_length="303" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28302" g_stop="28478" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="706" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E461072" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22833" e_stop="23060"/>
          <exon e_start="26606" e_stop="26908"/>
          <exon e_start="28302" e_stop="28478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTCTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACT</genome_strand>
        <mrna_strand>GAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTTCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTAATTTTCTGTTCTTGGTTTTTGTCTTTGTTTT--TTTTTTTTTTGGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTAGAGAATGGGATGAGTTAATCAGGCTTTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGAGGAGGATATATATTGTTGTCAACACCTAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAATTACCAGGATATTGGTGATTCCCGCAGTGCATATGCTGACTATGGTATTGCACCAGAAAGTGCTGAATTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTGTTGGTGGGAAGAATGGAGCGGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAATGGCCACACATTATGCGTGAAGTGCAAGTCAAAAGTACATGTATGTCCCATTTGCCGCCATGAGCTTGGAAACATTAGATGTCTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212154" ref_strand="+" ref_description="SGN-E212154 [cLEC-75-D22]">
      <seq>aaaaacaagagcctgttttggtggacacgaaaatcaaggagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttgatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22535" stop="28776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22835" g_stop="22926" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22927" i_stop="26605" i_length="3679">
            <donor d_prob="0.605" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26606" g_stop="26908" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="395" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28302" g_stop="28476" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="570" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E212154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22835" e_stop="22926"/>
          <exon e_start="26606" e_stop="26908"/>
          <exon e_start="28302" e_stop="28476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTCTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATA</genome_strand>
        <mrna_strand>AAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254176" ref_strand="+" ref_description="SGN-E254176 [cLEG-34-M16]">
      <seq>gaaaatcaaggagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttgttaagaccctttcattttctgttcttggtttttgtctttgttttccttttttttgttgttgatgaagcctatcaggaagacccaattattggttgcttttgttgagaatgggatgagttaatctggcttttacgtacaaaatcttatcttggatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22563" stop="28720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22863" g_stop="23078" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23079" i_stop="26605" i_length="3527">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26606" g_stop="26908" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="519" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28302" g_stop="28420" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="638" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E254176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22863" e_stop="23078"/>
          <exon e_start="26606" e_stop="26908"/>
          <exon e_start="28302" e_stop="28420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTCTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACT</genome_strand>
        <mrna_strand>GAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359995" ref_strand="+" ref_description="SGN-E359995 [cLPP-9-O10]">
      <seq>agaactagtctcgagtttttttttttttttttttgatgaagcctatcaggaagacccaattattggttgcttttgttgagaatgggatgagttaatctggcttttaggatcagggccgtcaagagatctagaagatcagatttgaggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaattaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagtgggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaatggccacacattatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtctagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatattattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaactgcccatatgcaggatctgaaatgcgctgtaccggtgatattcagtacctcgttgcacacttaaaagatgatcacaaagttgatatgcatgnatggctgtaccttcaatcatcgttatgtcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22669" stop="28945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22954" g_stop="23060" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23061" i_stop="26605" i_length="3545">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26606" g_stop="26908" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="410" r_length="303" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28302" g_stop="28645" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="756" r_length="346" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E359995" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22954" e_stop="23060"/>
          <exon e_start="26606" e_stop="26908"/>
          <exon e_start="28302" e_stop="28645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTCTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATA-TATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTG-AATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATG-ATGGCTGTACCTTCAATCATCGTTATGTCAAATC</genome_strand>
        <mrna_strand>AGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGATCTAGAAGATCAGATTTGAGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAATTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTGGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAATGGCCACACATTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTCTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATTATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAACTGCCCATATGCAGGATCTGAAATGCGCTG-TACCGGTGATATTCAGTACCTCGTTGCACACTTAAAAGATGATCACAAAGTTGATATGCATGNATGGCTGTACCTTCAATCATCGTTATGTCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368673" ref_strand="+" ref_description="SGN-E368673 [TUS-22-L12]">
      <seq>tgagaatgggatgagttaatctggcttttacgtacaaaatcttatcttggatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacanagttgatatgcattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="22730" stop="28914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23030" g_stop="23078" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23079" i_stop="26605" i_length="3527">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26606" g_stop="26908" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="352" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28302" g_stop="28614" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="666" r_length="314" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E368673" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23030" e_stop="23078"/>
          <exon e_start="26606" e_stop="26908"/>
          <exon e_start="28302" e_stop="28614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTCTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCA-TGATG</genome_strand>
        <mrna_strand>TGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACANAGTTGATATGCATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255947" ref_strand="+" ref_description="SGN-E255947 [cLEG-35-K13]">
      <seq>gtcaatccataccatgaaactagctgcagatgaggatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="25334" stop="28721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25634" g_stop="25667" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25668" i_stop="26605" i_length="938">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26606" g_stop="26908" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="337" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28302" g_stop="28421" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="457" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E255947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25634" e_stop="25667"/>
          <exon e_start="26606" e_stop="26908"/>
          <exon e_start="28302" e_stop="28421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTCTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTA</genome_strand>
        <mrna_strand>GTCAATCCATACCATGAAACTAGCTGCAGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268631" ref_strand="+" ref_description="SGN-E268631 [cLEI-13-P12]">
      <seq>aaaatcttatcttggatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="26305" stop="28913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26606" g_stop="26908" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="317" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28302" g_stop="28613" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="629" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E268631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26606" e_stop="26908"/>
          <exon e_start="28302" e_stop="28613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTCTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGAT</genome_strand>
        <mrna_strand>GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400490" ref_strand="+" ref_description="SGN-E400490 [cSTC-14-G3]">
      <seq>gctagaagatcagatttgaggaggatatatattgttgccaacacctagtaggggtatatagataccatggctcccggaggcagtaattaccaggatattggtgattcccgcagtgcatatgctgactatggtattgcaccagaaagtgctgaattcaaaaactccccctttagaaaagctgcacctgttattggtgggaagaatggagcgggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="26325" stop="27138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26625" g_stop="26838" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E400490" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26625" e_stop="26838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTA-GTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATC</genome_strand>
        <mrna_strand>GCTAGAAGATCAGATTTGAGGAGGATATATATTGTTGCCAACACCTAGTAGGGGTATATAGATACCATGGCTCCCGGAGGCAGTAATTACCAGGATATTGGTGATTCCCGCAGTGCATATGCTGACTATGGTATTGCACCAGAAAGTGCTGAATTCAAAAACTCCCCCTTTAGAAAAGCTGCACCTGTTATTGGTGGGAAGAATGGAGCGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206844" ref_strand="+" ref_description="SGN-E206844 [cLEC-33-C18]">
      <seq>gtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactgaaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="26406" stop="28913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26706" g_stop="26908" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28302" g_stop="28613" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="515" r_length="312" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E206844" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26706" e_stop="26908"/>
          <exon e_start="28302" e_stop="28613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTCTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGAT</genome_strand>
        <mrna_strand>GTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGAAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709243" ref_strand="+" ref_description="SGN-E709243 [FA51AE04]">
      <seq>ccgatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgatggctgtaccttcaatcatcgttatgtcaaatctaatcctcaagaagttgagaatgctacatggatgttgacggtttttaactgtttcggtcaccagttctgcctgcactttgaggctttcaatcttggattggcaccggtatacatggcattccttcgttttatgggtgatgatgatgatgccaaaagatttacctatagtcttgaagtaagtggatttggcagaaagttaacatggcagggagtacccaggaccatccgtgatagtcataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="26449" stop="30273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26748" g_stop="26908" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28302" g_stop="28685" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="545" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28686" i_stop="29771" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29772" g_stop="29974" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="748" r_length="203" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E709243" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26748" e_stop="26908"/>
          <exon e_start="28302" e_stop="28685"/>
          <exon e_start="29772" e_stop="29974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTCTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACGGTTAGTCCTCTATCTTTCTTTCTCTCTTTTTTCTTTTTTCCTTTGTTGTGAAGGAGAGCCTTGGTGTAACTGGTTAAGTTGCCGCCATGTGACCAGGAGGTCACGTGTTTGAGCCATGGAAATAGCCTCTTGCAGCAATGCAGGGTAAGACTGTATAACCTCTCCTATCTCTACGAGGTAGGAGTAAGGTTTGTATACACTCTACCCTCCCTAGATCCCACTTTTAGGCTAACACCTGCCACCGGGTATGTTATTGTAATTTTACAGCTTTCCTGCACAAGTAAAAGAAGCACAAACGTCCAGTGTTTTGTGCTTCTTTATCAACAACTTAAAGGCAAAATCCCAATGAGATTCACATACCCTTTTAAGTCAACATTGAAAGAAAATCTTTTGAAAATTCTGATGCTGTCTTCTGTGGAAGGAGAGAAATTGATGGCTGTTTCTGTTAATTTGTTCTCTTAAAGTTAGATCTTGAACTCCTATTCAATACTTTGAGGAAAAATCTGTTACTATTTACCTTATCAAAAAAAGAAGAACCACTATTATGTACTCCTTCGTTACAATTTGTTTTACTTTCCTTTTAGTTTGTTTATAAAAGAATGCCTCTTCCCCTTTTTGGCAAAGTGCAAACTCTTTAATTCCAACTCTTCATATGACATGTTTAATGCCATAAGATTGAAGTACATTTTGATACATTTTACATATTTTGAGTTTAAGATGACAAGATTCAAAAAATTTCTCTACTTTCTTAAACTCCGAGACACATCAAAACCAGGCAAATAATTGAAACGGAGCAGTTTTCTTCATCCAATTGTAGAAGTGTTGTATAACATTTTGTTATTCATCATCGTCTTTGTACTTTAGCTATTGTTAGGAGGTTCATACTTCTATTGCCAGCTTTATCTTTTTTGGTTGAAAGTGAAGGCAGACAAGAGCATGCATAATTTTGTTATTCGCCTACCAATTAATTTTCCATCTAGCATTTAGCCATACGATAACCGAGCCTTTTTCTTTGTGGATTTTCACATTGTTCCATCTGCAATGATGTGCTGTTGGTAATAGTTTGTTTGCTGATTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAAC</genome_strand>
        <mrna_strand>CCGATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCCAAAAGATTTACCTATAGTCTTGAAGTAAGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCCAGGACCATCCGTGATAGTCATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236248" ref_strand="+" ref_description="SGN-E236248 [cLED-20-P7]">
      <seq>gtcaaaagtacatgtgtggccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgatggctgtaccttcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="28037" stop="28930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28337" g_stop="28630" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E236248" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28337" e_stop="28630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCA</genome_strand>
        <mrna_strand>GTCAAAAGTACATGTGTGGCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373105" ref_strand="+" ref_description="SGN-E373105 [TUS-32-M1]">
      <seq>agaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgatggctgtaccttcaatcatcgttatgtcaaatctaatcctcaagaagttgagaatgctacatggatgttgacggtttttaactgtttcggtcaccagttctgcctgcactttgaggctttcaatcttggattggcaccggtatacatggcattccttcgttttatgggtgatgatgatgatgcgaaaagatttagctatagtcttgaagtaggtggatttggcagaaagttaacatggcagggagtaccgaggagcatccgtgatagtcataaaactgtccgagacagtttagacgggctgattattcaaaggagcatggcactcttcttctctggtggtgacaggaaggagctgaagctaaaggtagctgggcgtatttggcgagagccattgtaaactagatatatgcatcttccttcatcgtggggatgccctgaaagatagttagttatcgctaaattggttggtggcttaattttttgtaatggttctatacagtttctggtttttcggatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="28121" stop="30519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28421" g_stop="28685" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28686" i_stop="29771" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29772" g_stop="30219" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="711" r_length="446" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E373105" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28421" e_stop="28685"/>
          <exon e_start="29772" e_stop="30219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACGGTTAGTCCTCTATCTTTCTTTCTCTCTTTTTTCTTTTTTCCTTTGTTGTGAAGGAGAGCCTTGGTGTAACTGGTTAAGTTGCCGCCATGTGACCAGGAGGTCACGTGTTTGAGCCATGGAAATAGCCTCTTGCAGCAATGCAGGGTAAGACTGTATAACCTCTCCTATCTCTACGAGGTAGGAGTAAGGTTTGTATACACTCTACCCTCCCTAGATCCCACTTTTAGGCTAACACCTGCCACCGGGTATGTTATTGTAATTTTACAGCTTTCCTGCACAAGTAAAAGAAGCACAAACGTCCAGTGTTTTGTGCTTCTTTATCAACAACTTAAAGGCAAAATCCCAATGAGATTCACATACCCTTTTAAGTCAACATTGAAAGAAAATCTTTTGAAAATTCTGATGCTGTCTTCTGTGGAAGGAGAGAAATTGATGGCTGTTTCTGTTAATTTGTTCTCTTAAAGTTAGATCTTGAACTCCTATTCAATACTTTGAGGAAAAATCTGTTACTATTTACCTTATCAAAAAAAGAAGAACCACTATTATGTACTCCTTCGTTACAATTTGTTTTACTTTCCTTTTAGTTTGTTTATAAAAGAATGCCTCTTCCCCTTTTTGGCAAAGTGCAAACTCTTTAATTCCAACTCTTCATATGACATGTTTAATGCCATAAGATTGAAGTACATTTTGATACATTTTACATATTTTGAGTTTAAGATGACAAGATTCAAAAAATTTCTCTACTTTCTTAAACTCCGAGACACATCAAAACCAGGCAAATAATTGAAACGGAGCAGTTTTCTTCATCCAATTGTAGAAGTGTTGTATAACATTTTGTTATTCATCATCGTCTTTGTACTTTAGCTATTGTTAGGAGGTTCATACTTCTATTGCCAGCTTTATCTTTTTTGGTTGAAAGTGAAGGCAGACAAGAGCATGCATAATTTTGTTATTCGCCTACCAATTAATTTTCCATCTAGCATTTAGCCATACGATAACCGAGCCTTTTTCTTTGTGGATTTTCACATTGTTCCATCTGCAATGATGTGCTGTTGGTAATAGTTTGTTTGCTGATTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGA</genome_strand>
        <mrna_strand>AGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAG-ATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGT-AATGGTTCTATACAGTTTCTGGTTTTTCGGATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294141" ref_strand="+" ref_description="SGN-E294141 [cLET-13-L17]">
      <seq>agaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgatggctgtaccttcaatcatcgttatgtcaaatctaatcctcaagaagttgagaatgctacatggatgttgacggtttttaactgtttcggtcaccagttctgcctgcactttgaggctttcaatcttggattggcaccggtatacatggcattccttcgttttatgggtgatgatgatgatgcgaaaagatttagctatagtcttgaagtaggtggatttggcagaaagttaacatggcagggagtaccgaggagcatccgtgatagtcataaaactgtccgagacagtttagacgggctgattattcaaaggagcatggcactcttcttctctggtggtgacaggaaggagctgaagctaaaggtagctgggcgtatttggcgagagccattgtaaactagatatatgcatcttccttcatcgtggggatgccctgaaagtatagttagttatcgctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="28121" stop="30460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28421" g_stop="28685" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28686" i_stop="29771" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29772" g_stop="30160" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="654" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E294141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28421" e_stop="28685"/>
          <exon e_start="29772" e_stop="30160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACGGTTAGTCCTCTATCTTTCTTTCTCTCTTTTTTCTTTTTTCCTTTGTTGTGAAGGAGAGCCTTGGTGTAACTGGTTAAGTTGCCGCCATGTGACCAGGAGGTCACGTGTTTGAGCCATGGAAATAGCCTCTTGCAGCAATGCAGGGTAAGACTGTATAACCTCTCCTATCTCTACGAGGTAGGAGTAAGGTTTGTATACACTCTACCCTCCCTAGATCCCACTTTTAGGCTAACACCTGCCACCGGGTATGTTATTGTAATTTTACAGCTTTCCTGCACAAGTAAAAGAAGCACAAACGTCCAGTGTTTTGTGCTTCTTTATCAACAACTTAAAGGCAAAATCCCAATGAGATTCACATACCCTTTTAAGTCAACATTGAAAGAAAATCTTTTGAAAATTCTGATGCTGTCTTCTGTGGAAGGAGAGAAATTGATGGCTGTTTCTGTTAATTTGTTCTCTTAAAGTTAGATCTTGAACTCCTATTCAATACTTTGAGGAAAAATCTGTTACTATTTACCTTATCAAAAAAAGAAGAACCACTATTATGTACTCCTTCGTTACAATTTGTTTTACTTTCCTTTTAGTTTGTTTATAAAAGAATGCCTCTTCCCCTTTTTGGCAAAGTGCAAACTCTTTAATTCCAACTCTTCATATGACATGTTTAATGCCATAAGATTGAAGTACATTTTGATACATTTTACATATTTTGAGTTTAAGATGACAAGATTCAAAAAATTTCTCTACTTTCTTAAACTCCGAGACACATCAAAACCAGGCAAATAATTGAAACGGAGCAGTTTTCTTCATCCAATTGTAGAAGTGTTGTATAACATTTTGTTATTCATCATCGTCTTTGTACTTTAGCTATTGTTAGGAGGTTCATACTTCTATTGCCAGCTTTATCTTTTTTGGTTGAAAGTGAAGGCAGACAAGAGCATGCATAATTTTGTTATTCGCCTACCAATTAATTTTCCATCTAGCATTTAGCCATACGATAACCGAGCCTTTTTCTTTGTGGATTTTCACATTGTTCCATCTGCAATGATGTGCTGTTGGTAATAGTTTGTTTGCTGATTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAAT</genome_strand>
        <mrna_strand>AGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331455" ref_strand="+" ref_description="SGN-E331455 [cTOD-9-N6]">
      <seq>acttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgatggctgtaccttcaatcatcgttatgtcaaatctaatcctcaagaagttgagaatgctacatggatgttgacggtttttaactgtttcggtcaccagttctgcctgcactttgaggctttcaatcttggattggcaccggtatacatggcattccttcgttttatgggtgatgatgatgatgcgaaaagatttagctatagtcttgaagtaggtggatttggcagaaagttaacatggcagggagtaccgaggagcatccgtgatagtcataaaactgtccgagacagtttagacgggctgattattcaaaggagcatggcactcttcttctctggtggtgacaggaaggagctgaaactaaaggtagctgggcgtatttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="28167" stop="30382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28467" g_stop="28685" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28686" i_stop="29771" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29772" g_stop="30082" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="530" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E331455" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28467" e_stop="28685"/>
          <exon e_start="29772" e_stop="30082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACGGTTAGTCCTCTATCTTTCTTTCTCTCTTTTTTCTTTTTTCCTTTGTTGTGAAGGAGAGCCTTGGTGTAACTGGTTAAGTTGCCGCCATGTGACCAGGAGGTCACGTGTTTGAGCCATGGAAATAGCCTCTTGCAGCAATGCAGGGTAAGACTGTATAACCTCTCCTATCTCTACGAGGTAGGAGTAAGGTTTGTATACACTCTACCCTCCCTAGATCCCACTTTTAGGCTAACACCTGCCACCGGGTATGTTATTGTAATTTTACAGCTTTCCTGCACAAGTAAAAGAAGCACAAACGTCCAGTGTTTTGTGCTTCTTTATCAACAACTTAAAGGCAAAATCCCAATGAGATTCACATACCCTTTTAAGTCAACATTGAAAGAAAATCTTTTGAAAATTCTGATGCTGTCTTCTGTGGAAGGAGAGAAATTGATGGCTGTTTCTGTTAATTTGTTCTCTTAAAGTTAGATCTTGAACTCCTATTCAATACTTTGAGGAAAAATCTGTTACTATTTACCTTATCAAAAAAAGAAGAACCACTATTATGTACTCCTTCGTTACAATTTGTTTTACTTTCCTTTTAGTTTGTTTATAAAAGAATGCCTCTTCCCCTTTTTGGCAAAGTGCAAACTCTTTAATTCCAACTCTTCATATGACATGTTTAATGCCATAAGATTGAAGTACATTTTGATACATTTTACATATTTTGAGTTTAAGATGACAAGATTCAAAAAATTTCTCTACTTTCTTAAACTCCGAGACACATCAAAACCAGGCAAATAATTGAAACGGAGCAGTTTTCTTCATCCAATTGTAGAAGTGTTGTATAACATTTTGTTATTCATCATCGTCTTTGTACTTTAGCTATTGTTAGGAGGTTCATACTTCTATTGCCAGCTTTATCTTTTTTGGTTGAAAGTGAAGGCAGACAAGAGCATGCATAATTTTGTTATTCGCCTACCAATTAATTTTCCATCTAGCATTTAGCCATACGATAACCGAGCCTTTTTCTTTGTGGATTTTCACATTGTTCCATCTGCAATGATGTGCTGTTGGTAATAGTTTGTTTGCTGATTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCG</genome_strand>
        <mrna_strand>ACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAACTAAAGGTAGCTGGGCGTATTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461352" ref_strand="+" ref_description="SGN-E461352 [cPRO-8-K5]">
      <seq>aagattcaaaagtcttttttactttcttaaactccgcgtcacatcaaaaccagacaaacaattgaaactggggagtagttttcttcatccaattgtagaagtgatgtatacattttgttattcatcgtcatgtttgtactttagctattgctaggaggctcatacttttatgcccagctttatcttttctggttgaaaatgaaggcagacaagagcatgcataattttgttgttcgcctatcaattaattttcagtctagcatttagtcatgataactgagctttttttttttgtggattttcacattgttccatctgcaatgtgctgttggtaatagtttgtttgctgtttcctggaataggtttttaactgtttcggtcaccagttctgcctgcactttgaggctttcaatcttggattggcaccggtatacatggcattccttcgttttatgggtgatgatgatgatgcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="29108" stop="30185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29408" g_stop="29885" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E461352" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29408" e_stop="29885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTCAAAAAATTTCTCTACTTTCTTAAACTCCGAGACACATCAAAACCAGGCAAATAATTGAAAC---GGAGCAGTTTTCTTCATCCAATTGTAGAAGTGTTGTATAACATTTTGTTATTCATCATCGTCTTTGTACTTTAGCTATTGTTAGGAGGTTCATACTTCTATTGCCAGCTTTATCTTTTTTGGTTGAAAGTGAAGGCAGACAAGAGCATGCATAATTTTGTTATTCGCCTACCAATTAATTTTCCATCTAGCATTTAGCCATACGATAACCGAGC-CTTTTTCTTTGTGGATTTTCACATTGTTCCATCTGCAATGATGTGCTGTTGGTAATAGTTTGTTTGCTGATTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAA</genome_strand>
        <mrna_strand>AAGATTCAAAAGTCTTTTTTACTTTCTTAAACTCCGCGTCACATCAAAACCAGACAAACAATTGAAACTGGGGAGTAGTTTTCTTCATCCAATTGTAGAAGTGATGTAT-ACATTTTGTTATTCATCGTCATGTTTGTACTTTAGCTATTGCTAGGAGGCTCATACTTTTATGCCCAGCTTTATCTTTTCTGGTTGAAAATGAAGGCAGACAAGAGCATGCATAATTTTGTTGTTCGCCTATCAATTAATTTTCAGTCTAGCATTTAGTCAT--GATAACTGAGCTTTTTTTTTTTGTGGATTTTCACATTGTTCCATCTGC-A--ATGTGCTGTTGGTAATAGTTTGTTTGCTGTTTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435119" ref_strand="+" ref_description="SGN-E435119 [STM-61-C13]">
      <seq>tcatatggcaggtcataaaaaagcttaaaatgcctcacaactttagattcttgatccacagttgagctaaactacaatcgatacgatcgatccgaaaaaccagaaactgtatagaaccatttacaaaaaattaagccaccaaccaatttagcgataactaactatactttctgggcatccccacaatgaaggaagatgcatatatctagtttacaatggctctcgccaaatacgcccagctacctttagcttcagctccttcctgtcaccaccagagaagaagagtgccatgctcctttgaataatcagcccgtctaaactgtctcggacagttttatgactatcacggatgctcctcgggactccctgccatgttaactttctgccaaatccacctacttcaagactataactaaatcttttcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="30605" stop="29579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30305" g_stop="29879" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E435119" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30305" e_stop="29879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATGGCTGGTCATAGAAAAGCTTAAAATGCCTCACAACTTTAGATACATGATCCACAGTTGAGCTAAACTACAATCGATACGATCGATCCGAAAAACCAGAAACTGTATAGAACCATTTACAAAAAATTAAGCCACCAACCAATTTAGCGATAACTAACTATACTTTCAGGGCATCCCCACGATGAAGGAAGATGCATATATCTAGTTTACAATGGCTCTCGCCAAATACGCCCAGCTACCTTTAGCTTCAGCTCCTTCCTGTCACCACCAGAGAAGAAGAGTGCCATGCTCCTTTGAATAATCAGCCCGTCTAAACTGTCTCGGACAGTTTTATGACTATCACGGATGCTCCTCGGTACTCCCTGCCATGTTAACTTTCTGCCAAATCCACCTACTTCAAGACTATAGCTAAATCTTTTCGCA</genome_strand>
        <mrna_strand>TCATATGGCAGGTCATAAAAAAGCTTAAAATGCCTCACAACTTTAGATTCTTGATCCACAGTTGAGCTAAACTACAATCGATACGATCGATCCGAAAAACCAGAAACTGTATAGAACCATTTACAAAAAATTAAGCCACCAACCAATTTAGCGATAACTAACTATACTTTCTGGGCATCCCCACAATGAAGGAAGATGCATATATCTAGTTTACAATGGCTCTCGCCAAATACGCCCAGCTACCTTTAGCTTCAGCTCCTTCCTGTCACCACCAGAGAAGAAGAGTGCCATGCTCCTTTGAATAATCAGCCCGTCTAAACTGTCTCGGACAGTTTTATGACTATCACGGATGCTCCTCGGGACTCCCTGCCATGTTAACTTTCTGCCAAATCCACCTACTTCAAGACTATAACTAAATCTTTTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396227" ref_strand="+" ref_description="SGN-E396227 [TUS-34-K16](-)">
      <seq>ctgattattcaaaggggcaaggcactcttcttctctggtggtgacaggaaggagctgaagctaaaggtagctgggcgtatttggcgagagccattgtaaactagatatatgcatcttccttcattgtggggatgccctgaaagtatagttagttatcgctaaattggttggtggcttaattttttgtaaatggttctatacagtttctggtttttcggatcgatcgtatcgattgtagtttagctcaactgtggatcatgtatctaaagttgtgaggcattttaagcttttctatgaccagccatatgataatctatctggttattagtctctttctgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="29697" stop="30638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29997" g_stop="30333" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="353"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E396227" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29997" e_stop="30333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</genome_strand>
        <mrna_strand>CTGATTATTCAAAGGGGCAAGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATTGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604988" ref_strand="+" ref_description="SGN-E604988 [57007]">
      <seq>tgggattcaagttctgttgatattgctgcttctggtcttggttggtttgccattggactaaagggagatgctaaattaggtgtctggacatatgatggtgttgatgtcattgttcgtaacgcgttactcccaaacagatcctatgattttgaagttgctggctttactgtttcaaaaattgtttccactgctgaccgctcctcaaataagcagcgccgtgatgagaagaagaggaaactgagcgactctactgcagaaaaacctgcaaaaccatcatctgtcgatgtggcttcaactacttgctaattgtggaagcatttacaatctggcaatgtactttgcttgtcccagcactggaatgtagatcggacgtgggaataatcacctattacctctccgggacttggataagttgatgcgtttctaccatgatttttgccccctgcaaagaaaaacgcggcatcaaaaccagagaaatgcattaagcaaaggcattcagggtccatccactattgcatatcaagacaccttctgctgtgatggcggtatcccctttacgctgttcttaccttcgttatactcaagttttggcgtctatcgatgccaaaatgtctcatttcgtaaatgaagcttctttatacacaaattttgctgttcatcgatgccaaaatgtcttgatatctaaatgaagctaaaggctgaaggattcatgtatgcaacacaaaccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="35689" stop="37017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35989" g_stop="36717" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E604988" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35989" e_stop="36717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATTCAAGTTCTGTTGATATTGCTGCTTCTGGTCTTGGTTGGTTTGCCATTGGACTAAAGGGAGAGGCTAAATTAGGTGTCTGGACATATGATGGTGTTGATGTCATTGTTCGTAACGCGTTACTCCCAAACAGATCCTATGATTTCGAAGTTGCTGGCTTTACTGTTTCAAAAATTGTTTCCACTGCTGACCGCTCCTCAAATAAGCAGCGCCGTGATGATAAGAAGAGAAAATTGAGCGACTCTACTGCAGAAAAACCTGCAAAACCATCAACTGTCGATGTGGCTTCAACAACTTGCTAATTGTGGAAGCATTTACAATCTGGCGATGTACTTTGCTTGTCCCAGTACTGGAATGTAGATCGAACGTGGGAATAATCGTCTATTACCTCTCCGGGACCTGGATAAGTTGATGCCTTTCTACCATGATTTTTGCCCCCTGCAAAGAAAAACGCGGCATCAAAACCAGAGAAATGCAGGAAGTAAAGGCATTCAGGGTTCATGCACTATTGCATATCAAGACCCCTTCTGCTACGATGGCGGTATCCCTTTTACGCTGTTCTTACCTTCGTTATACACAAGTTTTGGCGTCTATCGATGCCAAAATGTCTCATTTCATAGATGAAGCTTCTTTATACACAAATTTTGGTGTTCATCGATGCCAAAATGTCTCGATACGTAAATGAAGCTAAATGCTGAAGGATTTATGTATGCAACACAAACCGA</genome_strand>
        <mrna_strand>TGGGATTCAAGTTCTGTTGATATTGCTGCTTCTGGTCTTGGTTGGTTTGCCATTGGACTAAAGGGAGATGCTAAATTAGGTGTCTGGACATATGATGGTGTTGATGTCATTGTTCGTAACGCGTTACTCCCAAACAGATCCTATGATTTTGAAGTTGCTGGCTTTACTGTTTCAAAAATTGTTTCCACTGCTGACCGCTCCTCAAATAAGCAGCGCCGTGATGAGAAGAAGAGGAAACTGAGCGACTCTACTGCAGAAAAACCTGCAAAACCATCATCTGTCGATGTGGCTTCAACTACTTGCTAATTGTGGAAGCATTTACAATCTGGCAATGTACTTTGCTTGTCCCAGCACTGGAATGTAGATCGGACGTGGGAATAATCACCTATTACCTCTCCGGGACTTGGATAAGTTGATGCGTTTCTACCATGATTTTTGCCCCCTGCAAAGAAAAACGCGGCATCAAAACCAGAGAAATGCATTAAGCAAAGGCATTCAGGGTCCATCCACTATTGCATATCAAGACACCTTCTGCTGTGATGGCGGTATCCCCTTTACGCTGTTCTTACCTTCGTTATACTCAAGTTTTGGCGTCTATCGATGCCAAAATGTCTCATTTCGTAAATGAAGCTTCTTTATACACAAATTTTGCTGTTCATCGATGCCAAAATGTCTTGATATCTAAATGAAGCTAAAGGCTGAAGGATTCATGTATGCAACACAAACCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389850" ref_strand="+" ref_description="SGN-E389850 [TUS-4-I2]">
      <seq>cacatgcttagcatcgatagggaggagcaagaagaggtggatgtgaacgatgatttggcgagggaccactcgttttacactcaagggttggagggtatacgccaagcgtatgtcaactttcagtctaccggtgaaccatttctaaggccctctgattattatgcggaaatggtgaagtctgacactcatatggagaaagttaagggccgactcttggctgagaagaggaggattgaggagtccgaggagaggaggaaggctagagataacaagaaacttgctaaagatgtacaagcacagaagatgaaagaacgaactaagcagaagaagcaagagattgagtccgttaaaaagtggaggaagcagaggcagcagagtggctttgataaagaagatgctggcggtctagacttggcatttaacggaggaaacacggataaaccctatcagagatcaaataagaagagacctggtgtatctcccggagatcgttcaggtggaaaagggaaggggttcaacaaaaagaggaaaaaccgggaattcaaggattctaagtttggatttggtggtagaaaaggtttaaagaagcagaacactgctgacactaccaacgacttcggtggattgcataaaggtgatcgttctgctaaaaacnacaacgcgttaagagatagttctactcatcagttactactcttgttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="39212" stop="40534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39512" g_stop="40238" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E389850" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39512" e_stop="40238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGGCTTAGCATCGATAGGGAGGAGCAAGAAGAGGTGGATGTGAACGATGATTTGGCGAGGGAACACTCGTTTTACACGCAGGGGTTGGAGGGTATACGTCAAGCGTACGTCAACTTTCAGTCAACCGGTGAACCATTTCTGAGGCCCTCTGATTATTACGCTGAAATGGTGAAGTCTGACACTCACATGGAGAAAGTTAAGGGCCGACTCTTGGCTGAGAAGAGGAGGATTGAGGAGTCCGAGGAGAGGAGGAAGGCAAGAGATAACAAGAAACTTGCTAAAGATGTACAAGCACAGAAGATGAAAGAACGAACTAAGCAGAAGAAGCAAGAGATTGAGTCCGTTAAGAAGTGGAGGAAGCAGAGGCAACAAAGTGGCTTCGACAAAGAAGATGCTGGCGGTCTAGATTTGGCATTTAATGGAGGAGAGGCGAATAAACCCTATCAGCGATCAAATAAGAAGAGACCTGGTGTATCTCCCGGAGATCGTTCAGGTGGTAAGGCAACATTTGGTGGAAAAGGTAAGGGGTTTGACAAAAAGAGGAAAAGCAGGGAATTCAAGGATTCAAAGTTTGGATTTGGTGGTAGAAAAGGTTTAAAGAAGCAGAACACTGCTGACACTACCAACGATTTCGGAGGATTCCACAAAGGTGATCGTTCTGCTAAAAACAACAAACGCGTTAAGAGATAATAGTTCTGCTCATCAGTTACTATTTTTTGTTGTA</genome_strand>
        <mrna_strand>CACATGCTTAGCATCGATAGGGAGGAGCAAGAAGAGGTGGATGTGAACGATGATTTGGCGAGGGACCACTCGTTTTACACTCAAGGGTTGGAGGGTATACGCCAAGCGTATGTCAACTTTCAGTCTACCGGTGAACCATTTCTAAGGCCCTCTGATTATTATGCGGAAATGGTGAAGTCTGACACTCATATGGAGAAAGTTAAGGGCCGACTCTTGGCTGAGAAGAGGAGGATTGAGGAGTCCGAGGAGAGGAGGAAGGCTAGAGATAACAAGAAACTTGCTAAAGATGTACAAGCACAGAAGATGAAAGAACGAACTAAGCAGAAGAAGCAAGAGATTGAGTCCGTTAAAAAGTGGAGGAAGCAGAGGCAGCAGAGTGGCTTTGATAAAGAAGATGCTGGCGGTCTAGACTTGGCATTTAACGGAGGAAACACGGATAAACCCTATCAGAGATCAAATAAGAAGAGACCTGGTGTATCTCCCGGAGATCGTTCAGGTGG--A---AA-A-------G----GG-AAGGGGTTCAACAAAAAGAGGAAAAACCGGGAATTCAAGGATTCTAAGTTTGGATTTGGTGGTAGAAAAGGTTTAAAGAAGCAGAACACTGCTGACACTACCAACGACTTCGGTGGATTGCATAAAGGTGATCGTTCTGCTAAAAACNAC-AACGCGTTAAGAG---ATAGTTCTACTCATCAGTTACTA-CTCTTGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231503" ref_strand="+" ref_description="SGN-E231503 [cLED-4-O8]">
      <seq>acaggcttagcatcgatagggaggagcaagaagaggtggatgtgaacgatgatttggcgagggagcactcgttttacactcaagggttggagggtatacgccaagcgtatgtcaactttcagtctaccggtgaaccatttctaaggccctctgattattatgcggaaatggtgaagtctgacactcatatggagaaagttaagggccgactcttggctgagaagaggaggattgaggagtccgaggagaggaggaatgctagagataacaagaaacttgctaaagatgtacaagctcagaagatgaaagaacgaactaagctgaagaagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="39213" stop="40145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39513" g_stop="39845" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E231503" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39513" e_stop="39845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGCTTAGCATCGATAGGGAGGAGCAAGAAGAGGTGGATGTGAACGATGATTTGGCGAGGGAACACTCGTTTTACACGCAGGGGTTGGAGGGTATACGTCAAGCGTACGTCAACTTTCAGTCAACCGGTGAACCATTTCTGAGGCCCTCTGATTATTACGCTGAAATGGTGAAGTCTGACACTCACATGGAGAAAGTTAAGGGCCGACTCTTGGCTGAGAAGAGGAGGATTGAGGAGTCCGAGGAGAGGAGGAAGGCAAGAGATAACAAGAAACTTGCTAAAGATGTACAAGCACAGAAGATGAAAGAACGAACTAAGCAGAAGAAGCAAG</genome_strand>
        <mrna_strand>ACAGGCTTAGCATCGATAGGGAGGAGCAAGAAGAGGTGGATGTGAACGATGATTTGGCGAGGGAGCACTCGTTTTACACTCAAGGGTTGGAGGGTATACGCCAAGCGTATGTCAACTTTCAGTCTACCGGTGAACCATTTCTAAGGCCCTCTGATTATTATGCGGAAATGGTGAAGTCTGACACTCATATGGAGAAAGTTAAGGGCCGACTCTTGGCTGAGAAGAGGAGGATTGAGGAGTCCGAGGAGAGGAGGAATGCTAGAGATAACAAGAAACTTGCTAAAGATGTACAAGCTCAGAAGATGAAAGAACGAACTAAGCTGAAGAAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417324" ref_strand="+" ref_description="SGN-E417324 [STM-25-A10]">
      <seq>ataacaatagctctcaattaagtactatttcatccgcgtaacaaaggaataactttggtctagtacaacaaaaagtagtaagtgataagcagaactatctcttaacgcgcttgttgttttttgcagaacgatcacctttgtggaatcctccgaaatcgttggtagtgtcagcagtgttctgcttcttcaaaccttttctcccaccaaatccaaacttggaatccttgaattccctgcttttcctctttttgtcaaaccccttccctttcccaccaaatgttgctttcccacctgaacgatctccgggagatacaccaggtctcttcttatttgatctctgatagggtttatcagcatttcctccattaaatgccaaatctagaccgccagcatcttctttatcaaagccgctttgttgcctctgcttcctccactttttaacagactcaatctcttgcttcttctgcttagttctttctttcatcttctgtgcttgtacatccttggcaagtttcttgttatctctggccttcctcctctcctcggactcctcaatcctcctcttctcagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40626" stop="39426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40277" g_stop="39726" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="573" r_length="548" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E417324" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40277" e_stop="39726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTCTAGTAAAGTACAAAGGAATAACTTTGATCTAGTACAACAAAAAATAGTAACTGATGAGCAGAACTATTATCTCTTAACGCGTTTGTTGTTTTTAGCAGAACGATCACCTTTGTGGAATCCTCCGAAATCGTTGGTAGTGTCAGCAGTGTTCTGCTTCTTTAAACCTTTTCTACCACCAAATCCAAACTTTGAATCCTTGAATTCCCTGCTTTTCCTCTTTTTGTCAAACCCCTTACCTTTTCCACCAAATGTTGCCTTACCACCTGAACGATCTCCGGGAGATACACCAGGTCTCTTCTTATTTGATCGCTGATAGGGTTTATTCGCCTCTCCTCCATTAAATGCCAAATCTAGACCGCCAGCATCTTCTTTGTCGAAGCCACTTTGTTGCCTCTGCTTCCTCCACTTCTTAACGGACTCAATCTCTTGCTTCTTCTGCTTAGTTCGTTCTTTCATCTTCTGTGCTTGTACATCTTTAGCAAGTTTCTTGTTATCTCTTGCCTTCCTCCTCTCCTCGGACTCCTCAATCCTCCTCTTCTCAGCCA</genome_strand>
        <mrna_strand>TAT-TTCATCCGCGTAACAAAGGAATAACTTTGGTCTAGTACAACAAAAAGTAGTAAGTGATAAGCAGAAC---TATCTCTTAACGCGCTTGTTGTTTTTTGCAGAACGATCACCTTTGTGGAATCCTCCGAAATCGTTGGTAGTGTCAGCAGTGTTCTGCTTCTTCAAACCTTTTCTCCCACCAAATCCAAACTTGGAATCCTTGAATTCCCTGCTTTTCCTCTTTTTGTCAAACCCCTTCCCTTTCCCACCAAATGTTGCTTTCCCACCTGAACGATCTCCGGGAGATACACCAGGTCTCTTCTTATTTGATCTCTGATAGGGTTTATCAGCATTTCCTCCATTAAATGCCAAATCTAGACCGCCAGCATCTTCTTTATCAAAGCCGCTTTGTTGCCTCTGCTTCCTCCACTTTTTAACAGACTCAATCTCTTGCTTCTTCTGCTTAGTTCTTTCTTTCATCTTCTGTGCTTGTACATCCTTGGCAAGTTTCTTGTTATCTCTGGCCTTCCTCCTCTCCTCGGACTCCTCAATCCTCCTCTTCTCAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338650" ref_strand="+" ref_description="SGN-E338650 [cTOE-15-N7]">
      <seq>aattacaaaaccctaaccctaaggagaagaccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcnctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40935" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41235" g_stop="41314" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="163" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="379" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="583" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="595"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E338650" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41235" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACAAAACCCTAACCCTAAGGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>AATTACAAAACCCTAACCCTAAGGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCNCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279178" ref_strand="-" ref_description="SGN-E279178 [cLEL-4-D18](-)">
      <seq>gcacgagagaagaccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttgggtgatctcatcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40955" stop="42723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41252" g_stop="41314" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="146" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42423" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="260" r_length="114" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E279178" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279178" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41252" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTT-GGTGATCTCATCATGAA</genome_strand>
        <mrna_strand>GCACGAGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGGTGATCTCATCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725244" ref_strand="+" ref_description="SGN-E725244 [FC26CA12]">
      <seq>ggagaagaccagcaattgctctcgaactccccttacaatcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40957" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41257" g_stop="41314" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="141" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="357" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="561" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="584"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E725244" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41257" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>GGAGAAGACCAGCAATTGCTCTCGAACTCCCCTTACAATCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715249" ref_strand="+" ref_description="SGN-E715249 [FB13DA07]">
      <seq>cgaataccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40960" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41259" g_stop="41314" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="139" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="355" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="559" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="569"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E715249" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41259" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CGAATACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355414" ref_strand="+" ref_description="SGN-E355414 [cTOS-25-E4]">
      <seq>aagaccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaacgaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40961" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41261" g_stop="41314" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="353" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43491" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="566" r_length="213" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E355414" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41261" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGAC</genome_strand>
        <mrna_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289458" ref_strand="+" ref_description="SGN-E289458 [cLET-3-H6]">
      <seq>aagaccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcantcgctgttgctgcccccactggtggtgctgctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40961" stop="42788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41261" g_stop="41314" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42488" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="315" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E289458" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41261" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTG</genome_strand>
        <mrna_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCANTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291337" ref_strand="+" ref_description="SGN-E291337 [cLET-2-M14]">
      <seq>aagaccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40961" stop="42737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41261" g_stop="41314" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42437" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="264" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E291337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41261" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTG</genome_strand>
        <mrna_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579489" ref_strand="+" ref_description="SGN-E579489 [86618]">
      <seq>gaccagcaattgctctcgaactcgccgtacactctttgctgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtagctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40963" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41263" g_stop="41314" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="346" r_length="216" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="550" r_length="204" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="563"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E579489" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41263" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>GACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTTGCTGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTAGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299014" ref_strand="+" ref_description="SGN-E299014 [cLET-42-N1]">
      <seq>accagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagacgctgttgctgcccccactgatggtgctgctggtggtgccgcagctgctgcccctgctgctgatgaaaagaaggatgagcccaaggaagaaagtgacgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgattattgcttcttatttaaaaatttgacgagactttgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40964" stop="43690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41264" g_stop="41314" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="134" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="350" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43390" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="462" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E299014" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41264" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTAT</genome_strand>
        <mrna_strand>ACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGACGCTGTTGCTGCCCCCACTGATGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGATGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCCCAAGGAAGAAAGTGACGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTATTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555098" ref_strand="+" ref_description="SGN-E555098 [cTSC-6-G21]">
      <seq>ccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40965" stop="43779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41265" g_stop="41314" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="133" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="349" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43475" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="546" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="578"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E555098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41265" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTAT</genome_strand>
        <mrna_strand>CCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559593" ref_strand="+" ref_description="SGN-E559593 [19113]">
      <seq>cagcaattgctctcgaactcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttggatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctggctgctgaggaaaagaaggaagagcccaagggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttctgttacttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40966" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41266" g_stop="41314" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="128" r_length="79" r_score="0.885"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="348" r_length="220" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.907" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="553" r_length="205" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="573"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E559593" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41266" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTT-GCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCT-GCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAA-GGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CAGCAATTGCTCTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTCTGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735212" ref_strand="+" ref_description="SGN-E735212 [LB14CH11]">
      <seq>cagtaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttannaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40966" stop="43779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41266" g_stop="41314" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="132" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="348" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="552" r_length="204" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="574"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E735212" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41266" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CAGTAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713373" ref_strand="+" ref_description="SGN-E713373 [FB08BH01]">
      <seq>cagtaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40966" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41266" g_stop="41314" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="132" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="348" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="552" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="577"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E713373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41266" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CAGTAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595067" ref_strand="+" ref_description="SGN-E595067 [38332]">
      <seq>cagaaattgctctcgaactcgccgtgcactctttgccgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgctcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttcttctttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40966" stop="43767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41266" g_stop="41314" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="127" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="343" r_length="216" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43460" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="525" r_length="182" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="526" polyA_stop="542"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E595067" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41266" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTT</genome_strand>
        <mrna_strand>CAGAAATTGCTCTCGAACTCGCCGTGCACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTCTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571466" ref_strand="+" ref_description="SGN-E571466 [13789]">
      <seq>agcaattgctctcgaactcgccgtacactctttgctgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttnatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtagctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactggttaaatgtaacccttgacataattatggtttatgaacatcagttatgttacttattaccgactccaattatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40967" stop="43803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41267" g_stop="41314" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="126" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="342" r_length="216" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43503" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="569" r_length="227" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E571466" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41267" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCAC-AGTTAAATGTAA-CCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCAATTATGTC</genome_strand>
        <mrna_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTTGCTGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTNATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTAGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGGTTAAATGTAACCCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTACCGACTCCAATTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E565673" ref_strand="+" ref_description="SGN-E565673 [4112]">
      <seq>agcaattgctctcgaactcgccgtacactctttgccgtcttctcgaagttaatcgatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgcattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtctatgaacatcagttctgttacttaagaacaacccacagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40967" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41267" g_stop="41314" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="126" r_length="78" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="345" r_length="219" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="550" r_length="205" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E565673" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41267" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACG-ATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGCATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTCTATGAACATCAGTTCTGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458921" ref_strand="+" ref_description="SGN-E458921 [cPRO-32-F16]">
      <seq>agaaattgctctcgaactcgccgtgcactctttgccgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgctcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggcggtggtggtgcagtcgctgttgctgcccccactggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40967" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41267" g_stop="41314" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="126" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="330" r_length="204" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="534" r_length="204" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="544"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E458921" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41267" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>AGAAATTGCTCTCGAACTCGCCGTGCACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGCGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCA------------CTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711716" ref_strand="+" ref_description="SGN-E711716 [FB02DB01]">
      <seq>ccctttagctctcgaactcgccgtacactcttcgccgtcttccctaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttactanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40972" stop="43781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41267" g_stop="41314" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="551" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="564"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E711716" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41267" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CCCTTTAGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCCCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336994" ref_strand="+" ref_description="SGN-E336994 [cTOE-20-B21]">
      <seq>agcatttgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40967" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41267" g_stop="41314" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="551" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="564"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E336994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41267" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>AGCATTTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338404" ref_strand="+" ref_description="SGN-E338404 [cTOE-15-K1]">
      <seq>agcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40967" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41267" g_stop="41314" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="551" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="561"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E338404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41267" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310691" ref_strand="+" ref_description="SGN-E310691 [cLEZ-15-E11]">
      <seq>agcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40967" stop="43767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41267" g_stop="41314" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43467" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="536" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E310691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41267" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACA</genome_strand>
        <mrna_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295885" ref_strand="+" ref_description="SGN-E295885 [cLET-27-M21]">
      <seq>agcaattgctctcgaactcgccgtacactcttcaccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctactgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggcggtggtggtgcagacactgttgctgaccccactggtggtgctgctggtggtggcgcatctgctgtccctgctgctgatgaaaagaaggaagctcccaacgaagaaagtgatgatgatgtgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40967" stop="43616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41267" g_stop="41314" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43316" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="385" r_length="38" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E295885" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41267" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTT</genome_strand>
        <mrna_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCACCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTACTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGCGGTGGTGGTGCAGACACTGTTGCTGACCCCACTGGTGGTGCTGCTGGTGGTGGCGCATCTGCTGTCCCTGCTGCTGATGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCCCAACGAAGAAAGTGATGATGATGTGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304929" ref_strand="+" ref_description="SGN-E304929 [cLEX-10-D9]">
      <seq>agcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggcgctggtggtggtggtggtgcactcgctgttgctgcccccactggtggtgctgctggtggtgccgcanctgctgcccctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40967" stop="42811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41267" g_stop="41314" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42511" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="332" r_length="201" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E304929" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41267" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCT</genome_strand>
        <mrna_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGCGCTGGTGGTGGTGGTGGTGCACTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCANCTGCTGCCCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434117" ref_strand="-" ref_description="SGN-E434117 [STM-59-O22]">
      <seq>gaaattgctctcgaactcgccgtgcactctttgccgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgctcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggcggtggtggtgcagtcgctgttgctgcccccactggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggggtataaacatcagttatgttcttaaaaaagatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40968" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41268" g_stop="41314" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="329" r_length="204" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43493" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="543" r_length="214" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E434117" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434117" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41268" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTC</genome_strand>
        <mrna_strand>GAAATTGCTCTCGAACTCGCCGTGCACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGCGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCA------------CTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGGGTATAAACATCAGTTATGTT-CTTAAAAAAGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404734" ref_strand="+" ref_description="SGN-E404734 [PPC-15-G19]">
      <seq>gaaattgctctcgaactcgccgtgcactctttgccgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgctcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggcggtggtggtgcagtcgctgttgctgcccccactggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaagagctactcccagtacgattttttgttcttttttaaaagtttgatgagacttggttatagcacccttgttaaagagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40968" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41268" g_stop="41314" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="329" r_length="204" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43491" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="542" r_length="213" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E404734" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41268" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGAC</genome_strand>
        <mrna_strand>GAAATTGCTCTCGAACTCGCCGTGCACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGCGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCA------------CTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAAGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAAGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434116" ref_strand="+" ref_description="SGN-E434116 [STM-59-O22]">
      <seq>gaaattgctctcgaactcgccgtgcactctttgccgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgctcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggcggtggtggtgcagtcgctgttgctgcccccactggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40968" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41268" g_stop="41314" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="329" r_length="204" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="533" r_length="204" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="543"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E434116" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41268" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>GAAATTGCTCTCGAACTCGCCGTGCACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGCGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCA------------CTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311073" ref_strand="+" ref_description="SGN-E311073 [cLEZ-17-J20]">
      <seq>tcaattgttctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccctgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40969" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41268" g_stop="41314" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="130" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="346" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="550" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="562"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E311073" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41268" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>TCAATTGTTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCCTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622959" ref_strand="+" ref_description="SGN-E622959 [73332]">
      <seq>gcaattgctctcgaactcgccgtacactctttgctgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtagctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40968" stop="43759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41268" g_stop="41314" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="341" r_length="216" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43459" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="522" r_length="181" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E622959" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41268" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTT</genome_strand>
        <mrna_strand>GCAATTGCTCTCGAACTCGCCGTACACTCTTTGCTGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTAGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458668" ref_strand="+" ref_description="SGN-E458668 [cPRO-7-A17]">
      <seq>aaattgctctcgaactcgccgtgcactctttgccgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgctcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttcttctttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41269" g_stop="41314" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="340" r_length="216" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="544" r_length="204" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="554"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E458668" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41269" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>AAATTGCTCTCGAACTCGCCGTGCACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTCTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569631" ref_strand="+" ref_description="SGN-E569631 [14095]">
      <seq>caattgctctcgaactcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttggctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctggctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40969" stop="43766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41269" g_stop="41314" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="345" r_length="221" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43466" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="533" r_length="188" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E569631" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41269" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTT-GCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCT-GCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAAC</genome_strand>
        <mrna_strand>CAATTGCTCTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578978" ref_strand="+" ref_description="SGN-E578978 [86101]">
      <seq>aattgctctcgaactcgccgtacactctttgctgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtagctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttattaccgactccaattatgtcgttttatggtttggatgatctgttaaactttcataacgaggacaatccgatcataccaatccagtagctctccctatagtcgacatggagactatggtatgtgattgggaatgagttcgttcatggcattaccagaagccctgaagtttttgttttatttctatctaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="43941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="339" r_length="216" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43674" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="737" r_length="398" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E578978" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCAATTATGTCGCTTTATAGTTTGGATGATCTTTTGGACTTCCAT-ACGAGGACAATCCGATCATCCCAATCCAGTAGCTCTCCTTATAGACGACATGGAGACTACGGTACGTGACTGTGAATGAGTTCGTTCATGGCATTACCAGTAG--CTTAAGTTTTTGTTCGATTTCTATCGTATGGTGC</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTTGCTGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTAGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTACCGACTCCAATTATGTCGTTTTATGGTTTGGATGATCTGTTAAACTTTCATAACGAGGACAATCCGATCATACCAATCCAGTAGCTCTCCCTATAGTCGACATGGAGACTATGGTATGTGATTGGGAATGAGTTCGTTCATGGCATTACCAGAAGCCCTGAAGTTTTTGTTTTATTTCTATC-TAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559570" ref_strand="-" ref_description="SGN-E559570 [19088]">
      <seq>tttggctctcgaactcgccgtacactctttgctgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcgaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtagctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttattaccgactccaattatgtcgttttatggtttgaaaaaaaaaaaaaaaaaaaaaaactcgagagtagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40972" stop="43818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.89"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="124" r_length="79" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="340" r_length="216" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43517" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="579" r_length="239" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="580" polyA_stop="602"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E559570" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559570" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATC-ACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCAATTATGTCGCTTTATAGTTTGG</genome_strand>
        <mrna_strand>TTTGGCTCTCGAACTCGCCGTACACTCTTTGCTGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCGACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTAGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTACCGACTCCAATTATGTCGTTTTATGGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587720" ref_strand="-" ref_description="SGN-E587720 [41258]">
      <seq>aattgctctcgaactcgccgtacactctttgctgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtagctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="43787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="339" r_length="216" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43487" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="548" r_length="209" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E587720" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587720" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTC</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTTGCTGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTAGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587707" ref_strand="+" ref_description="SGN-E587707 [41244]">
      <seq>aattgctctcgaactcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttctgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="43779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="342" r_length="219" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43473" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="537" r_length="195" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="575"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E587707" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTT</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451366" ref_strand="+" ref_description="SGN-E451366 [cSTS-12-D11]">
      <seq>aattgctctcgaactcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcnagttctgttannaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="43779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="342" r_length="219" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43470" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="534" r_length="192" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="565"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E451366" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCA</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356861" ref_strand="+" ref_description="SGN-E356861 [cTOS-22-O3]">
      <seq>aattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcngtgctggtggtggtggtggtgcantcnctgttgctgcccccactggtggtgctgctggtggtgccgcanctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccaatacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacaggtaaatgtaaccttgacataattatgggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="43761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="128" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="344" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43461" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="527" r_length="183" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E356861" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTA</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCNGTGCTGGTGGTGGTGGTGGTGCANTCNCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCANCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAATACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGGTAAATGTAACCTTGACATAATTATGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587736" ref_strand="-" ref_description="SGN-E587736 [41274]">
      <seq>aattgctctcgaactcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaacattggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaacattgacataattatggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="43760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="342" r_length="219" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43460" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="524" r_length="182" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E587736" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587736" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTT</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACATTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACATTGACATAATTATGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602583" ref_strand="+" ref_description="SGN-E602583 [55651]">
      <seq>aattgctctcgaactcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="43755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="342" r_length="219" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43455" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="519" r_length="177" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E602583" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTAT</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294888" ref_strand="-" ref_description="SGN-E294888 [cLET-17-G21](-)">
      <seq>aattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcantcnctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="43697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="128" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="344" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43397" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="463" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E294888" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294888" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCC</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCANTCNCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294887" ref_strand="+" ref_description="SGN-E294887 [cLET-17-G21]">
      <seq>aattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcantcnctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="43697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="128" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="344" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43397" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="463" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E294887" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCC</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCANTCNCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284827" ref_strand="+" ref_description="SGN-E284827 [cLER-19-K17]">
      <seq>aattgctctcgaactcgccgttcactcttcgccgtcttctcgaaggttagttgatcaatatgtcgcgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcaccccctgttgctgcccccactggaggtgctgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="42786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="128" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42486" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="304" r_length="176" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E284827" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGG</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTTCACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGCGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCACCCCCTGTTGCTGCCCCCACTGGAGGTGCTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283991" ref_strand="+" ref_description="SGN-E283991 [cLER-13-J14]">
      <seq>aattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcnctgttgctgcccccactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40970" stop="42774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="128" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42474" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="292" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E283991" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGG</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCNCTGTTGCTGCCCCCACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340904" ref_strand="+" ref_description="SGN-E340904 [cTOF-5-I11]">
      <seq>attgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtgggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40971" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41271" g_stop="41314" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="127" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="344" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="548" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="558"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E340904" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41271" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGT-GGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>ATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461044" ref_strand="+" ref_description="SGN-E461044 [cPRO-34-K3]">
      <seq>ttgctctcgaactcgccgtgcactctttgccgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgctcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggcggtggtggtgcagtcgctgttgctgcccccactggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttattaccgactccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40972" stop="43796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41272" g_stop="41314" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="121" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="325" r_length="204" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43495" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="542" r_length="217" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="552"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E461044" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41272" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCA</genome_strand>
        <mrna_strand>TTGCTCTCGAACTCGCCGTGCACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGCGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCA------------CTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTACCGACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587555" ref_strand="+" ref_description="SGN-E587555 [41089]">
      <seq>ttgctctcgaactcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttctgttacttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40972" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41272" g_stop="41314" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="121" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="340" r_length="219" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43486" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="548" r_length="208" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E587555" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41272" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTT</genome_strand>
        <mrna_strand>TTGCTCTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTCTGTTACTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448505" ref_strand="+" ref_description="SGN-E448505 [cSTS-3-K18]">
      <seq>ttgctctcgaactcgccgtacactctttgccgtcttctcgaagttatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtnggtggtggtgcagncnctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctgtttcaaaagtttgatgagacttgggtatagcaccgacgttgaggagattttggatctgcttgtcactgttaaatgtatccttgacataattatgggatatgaacatcagttctgttactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40972" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41272" g_stop="41314" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="120" r_length="77" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="340" r_length="220" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43483" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="545" r_length="205" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E448505" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41272" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGT-GGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTA</genome_strand>
        <mrna_strand>TTGCTCTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-ATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTNGGTGGTGGTGCAGNCNCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTGTTTCAAAAGTTTGATGAGACTTGGGTATAGCACCGACGTTGAGGAGATTTTGGATCTGCTTGTCACTGTTAAATGTATCCTTGACATAATTATGGGATATGAACATCAGTTCTGTTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605701" ref_strand="-" ref_description="SGN-E605701 [21628]">
      <seq>ttgctctcgaactcgccgtacactctcttgctgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacntacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagccttggtgatctcatcatgaatgtcggtgctggtgctgatggtggtgcagtagctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40972" stop="43780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41272" g_stop="41314" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="122" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="338" r_length="216" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43476" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="536" r_length="198" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E605701" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605701" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41272" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTCGAACTCGCCGTACACTCT-TCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATG</genome_strand>
        <mrna_strand>TTGCTCTCGAACTCGCCGTACACTCTCTTGCTGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACNTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGCTGATGGTGGTGCAGTAGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390849" ref_strand="+" ref_description="SGN-E390849 [TUS-47-E4]">
      <seq>ttgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgattatgatatgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40972" stop="43616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41272" g_stop="41314" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="126" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="342" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43316" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="380" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E390849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41272" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTT</genome_strand>
        <mrna_strand>TTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATTATGATATGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225313" ref_strand="-" ref_description="SGN-E225313 [cLEL-17-P6](-)">
      <seq>ttgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40972" stop="42739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41272" g_stop="41314" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="126" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42439" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="255" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E225313" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225313" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41272" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGT</genome_strand>
        <mrna_strand>TTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559502" ref_strand="-" ref_description="SGN-E559502 [19008]">
      <seq>tgctctcgaactcgccgtacactctttgctgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtagctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttattaccgactccaattatgtcgttttatggtttgaaaaaaaaaaaaaaaaaaaaaaactcgagagtagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40973" stop="43818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41273" g_stop="41314" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="120" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="336" r_length="216" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43517" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="575" r_length="239" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="576" polyA_stop="598"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E559502" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559502" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41273" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCAATTATGTCGCTTTATAGTTTGG</genome_strand>
        <mrna_strand>TGCTCTCGAACTCGCCGTACACTCTTTGCTGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTAGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTACCGACTCCAATTATGTCGTTTTATGGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285317" ref_strand="+" ref_description="SGN-E285317 [cLER-20-C16]">
      <seq>tgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40973" stop="43765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41273" g_stop="41314" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="125" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="341" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43465" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="528" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E285317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41273" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAA</genome_strand>
        <mrna_strand>TGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564032" ref_strand="+" ref_description="SGN-E564032 [3446]">
      <seq>tgctctcgaactcgccgtacactctttgctgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttggatcctccatggatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtagctgttgctgcccacactggtggtgctggtggtggtgccgcactgctgcccctggctgctgaggaaaagaaggaagagcccaagggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttggttaaggagatttttgatctgcttgtcactgttaaatgtaaccttggacataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40973" stop="43752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41273" g_stop="41314" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="122" r_length="80" r_score="0.872"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.83"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="338" r_length="216" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.907" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43452" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="515" r_length="177" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E564032" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41273" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTT-GCTCCTCCATG-ATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCT-GCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAA-GGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTT-GTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTT-GACATAAT</genome_strand>
        <mrna_strand>TGCTCTCGAACTCGCCGTACACTCTTTGCTGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGGATCCTCCATGGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTAGCTGTTGCTGCCCACACTGGTGGTGCTGGTGGTGGTGCCGCA-CTGCTGCCCCTGGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGGACATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716961" ref_strand="+" ref_description="SGN-E716961 [FB18CB08]">
      <seq>gctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40974" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41274" g_stop="41314" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="340" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="544" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="569"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E716961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41274" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225501" ref_strand="-" ref_description="SGN-E225501 [cLEL-17-P6](-)">
      <seq>gctctcgaactcgccgttcactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtcgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40974" stop="43686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41274" g_stop="41314" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="341" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43386" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="449" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E225501" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225501" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41274" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGT-GCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTG</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGTTCACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTCGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283446" ref_strand="+" ref_description="SGN-E283446 [cLER-12-L5]">
      <seq>gctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtccgtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggcgccgcaactgctgcccctgctgctgaggaaaagaaggaagagccccccgaagaaagtgatgatgatatgggtttcagcctgtttgattagaagctcctcccaacacgatttttgcttcttatttaaaaatttgacgagacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40974" stop="43685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41274" g_stop="41314" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="340" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43385" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="447" r_length="107" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E283446" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41274" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTT</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCCGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGCGCCGCAACTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCCCCGAAGAAAGTGATGATGATATGGGTTTCAGCCTGTTTGATTAGAAGCTCCTCCCAACACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215241" ref_strand="-" ref_description="SGN-E215241 [cLEL-20-M15](-)">
      <seq>gctctcgaactcgttttacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggcggtggtgcagacgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40990" stop="43668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41274" g_stop="41314" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="340" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43368" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="430" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E215241" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215241" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41274" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAA</genome_strand>
        <mrna_strand>GCTCTCGAACTCGTTTTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGCGGTGGTGCAGACGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215529" ref_strand="-" ref_description="SGN-E215529 [cLEL-20-M15](-)">
      <seq>gctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggttgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40974" stop="43605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41274" g_stop="41314" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="341" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43305" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="368" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E215529" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215529" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41274" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGG-TGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGAT</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232206" ref_strand="-" ref_description="SGN-E232206 [cLEL-5-A17](-)">
      <seq>gctctcgaactcgccggacacttttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40974" stop="42734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41274" g_stop="41314" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42434" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="248" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E232206" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232206" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41274" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTG</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGGACACTTTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232562" ref_strand="-" ref_description="SGN-E232562 [cLEL-5-A17](-)">
      <seq>gctctcgaactcgccgatcactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40974" stop="42733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41274" g_stop="41314" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42433" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="247" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E232562" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232562" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41274" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCT</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGATCACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307673" ref_strand="+" ref_description="SGN-E307673 [cLEY-16-L12]">
      <seq>tctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttatttccgactccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40976" stop="43796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41276" g_stop="41314" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="122" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="338" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43495" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="555" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="565"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E307673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41276" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCA</genome_strand>
        <mrna_strand>TCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591352" ref_strand="+" ref_description="SGN-E591352 [45063]">
      <seq>ctcgaactcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagccgaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttctgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40977" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41277" g_stop="41314" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="116" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="335" r_length="219" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="539" r_length="204" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="549"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E591352" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41277" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCGAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTCTGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587586" ref_strand="+" ref_description="SGN-E587586 [41120]">
      <seq>ctcgaactcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttattcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40977" stop="43776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41277" g_stop="41314" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="116" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="335" r_length="219" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43476" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="533" r_length="198" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E587586" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41277" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATG</genome_strand>
        <mrna_strand>CTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTATTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250552" ref_strand="+" ref_description="SGN-E250552 [cLEG-21-K9]">
      <seq>ctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40977" stop="43779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41277" g_stop="41314" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="121" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="337" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43475" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="534" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="550"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E250552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41277" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTAT</genome_strand>
        <mrna_strand>CTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606525" ref_strand="-" ref_description="SGN-E606525 [22470]">
      <seq>ctcgaactcgccgtacactctttgctgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtagctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40977" stop="43768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41277" g_stop="41314" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="116" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="332" r_length="216" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43468" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="522" r_length="190" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E606525" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606525" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41277" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACAT</genome_strand>
        <mrna_strand>CTCGAACTCGCCGTACACTCTTTGCTGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTAGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561105" ref_strand="+" ref_description="SGN-E561105 [20864]">
      <seq>ctcgaactcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40977" stop="42771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41277" g_stop="41314" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="116" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42480" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="289" r_length="173" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E561105" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41277" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGC</genome_strand>
        <mrna_strand>CTCGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338004" ref_strand="+" ref_description="SGN-E338004 [cTOE-14-E12]">
      <seq>tcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40978" stop="43755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41278" g_stop="41314" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="120" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="336" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43455" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="513" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E338004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41278" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTAT</genome_strand>
        <mrna_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599436" ref_strand="-" ref_description="SGN-E599436 [52424]">
      <seq>tcgaactcgccgtacactctttgctgtcttctcgaagttaatcaatatgtcgtacggagaagttgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagccttggtgatctcatcatgaatgtcggtgctgtggtgtgttggtgcagtagctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40978" stop="43747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41278" g_stop="41314" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="115" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="329" r_length="214" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43447" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="498" r_length="169" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E599436" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599436" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41278" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGAC</genome_strand>
        <mrna_strand>TCGAACTCGCCGTACACTCTTTGCTGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTACGGAGAAGTTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTGGTGATCTCATCATGAATGTCGGTGCT-GTGGT-GTGTTGGTGCAGTAGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336574" ref_strand="+" ref_description="SGN-E336574 [cTOE-4-A20]">
      <seq>tcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctccnnnttgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtctctgttgctgcccccactggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40978" stop="42777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41278" g_stop="41314" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="120" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42477" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="287" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E336574" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41278" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGG</genome_strand>
        <mrna_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCNNNTTGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCTCTGTTGCTGCCCCCACTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284562" ref_strand="+" ref_description="SGN-E284562 [cLES-3-D12]">
      <seq>ttgaactctgcgttcactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaaggtgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40978" stop="42734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41278" g_stop="41314" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="120" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42434" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="244" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E284562" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41278" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTG</genome_strand>
        <mrna_strand>TTGAACTCTGCGTTCACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGGTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466763" ref_strand="+" ref_description="SGN-E466763 [cPRO-26-A21]">
      <seq>cgaactcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcngtgctggtggtggtggtggtggtgcantcnctgttgctgcccccactggtggtgctggtggtggtgccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40979" stop="42795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41279" g_stop="41314" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="114" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42495" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="302" r_length="188" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E466763" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41279" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGC</genome_strand>
        <mrna_strand>CGAACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCNGTGCTGGTGGTGGTGGTGGTGGTGCANTCNCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253549" ref_strand="+" ref_description="SGN-E253549 [cLEG-24-L3]">
      <seq>gaactcgccgtacactcttttccgtcttctctaaggttagcagatcaataggtcgcgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaattttaactttagctaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40980" stop="42724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41280" g_stop="41314" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="118" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42424" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="232" r_length="114" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E253549" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41280" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAAT</genome_strand>
        <mrna_strand>GAACTCGCCGTACACTCTTTTCCGTCTTCTCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCAGATCAATAGGTCGCGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTTAACTTTAGCTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310841" ref_strand="+" ref_description="SGN-E310841 [cLEZ-15-I14]">
      <seq>aactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcaattatgttacttatttccgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40981" stop="43793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41281" g_stop="41314" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="117" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="333" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43493" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="548" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E310841" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41281" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTC</genome_strand>
        <mrna_strand>AACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAATTATGTTACTTATTTCCGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600862" ref_strand="-" ref_description="SGN-E600862 [53884]">
      <seq>actcgccgtacactctttgccgtcttctcgaagttaatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgccccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40982" stop="43766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41282" g_stop="41314" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41979" g_stop="42056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="111" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="331" r_length="220" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43466" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="519" r_length="188" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E600862" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600862" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41282" e_stop="41314"/>
          <exon e_start="41979" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTG-CCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAAC</genome_strand>
        <mrna_strand>ACTCGCCGTACACTCTTTGCCGTCTTCTCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303693" ref_strand="+" ref_description="SGN-E303693 [cLEY-7-M19]">
      <seq>ctcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttatttccgactccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="40994" stop="43796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41294" g_stop="41314" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="104" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="320" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43279" g_stop="43495" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="537" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="547"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E303693" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41294" e_stop="41314"/>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCA</genome_strand>
        <mrna_strand>CTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718818" ref_strand="+" ref_description="SGN-E718818 [FC05DF08]">
      <seq>cgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="41672" stop="43779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="96" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="312" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43279" g_stop="43488" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="522" r_length="210" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E718818" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCC</genome_strand>
        <mrna_strand>GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587556" ref_strand="+" ref_description="SGN-E587556 [41090]">
      <seq>ctcgaagttatcaatatgtcgttcggagaaattgcttgcacctacgctgccttgatcctccatgatgaggacattccaatcaccgctgagaaaatttcaactttagtcaaagcagctaatgtgacagtggagccatactggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttctgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="41677" stop="43779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="84" r_length="81" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="303" r_length="219" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43279" g_stop="43473" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="498" r_length="195" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="514"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E587556" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTT</genome_strand>
        <mrna_strand>G-AAGTT-ATCAATATGTCGTTCGGAGAAATTGCTTGCACCTACGCTGCCTTGATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GCTGAGAAAATTTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E562621" ref_strand="+" ref_description="SGN-E562621 [1061]">
      <seq>aactcgccgtaactctttgctgtcttctcgaagttatcaattgtcgtacggagaagttgcttgacctacgctgccttatcctccatgatgaggacattccaatcaccggtgagaaaattcaactttagtcaaagcagctaatgtgacagtggagccatactggcccctattgtttgctaagcttgctgagaagaaaagcctttgtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtanctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaacgaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="41677" stop="43769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41974" g_stop="42056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="107" r_length="78" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="322" r_length="215" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43279" g_stop="43470" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="514" r_length="192" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E562621" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41974" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCA</genome_strand>
        <mrna_strand>G-AAGTT-ATCAAT-TGTCGTACGGAGAAGTTGCTTG-ACCTACGCTGCCTT-ATCCTCCATGATGAGGACATTCCAATCACC..............................................................................................................................................................................................................................................................GGTGAGAAAA-TTCAACTTTAGTCAAAGCAGCTAATGTGACAGTGGAGCCATACTGGCCCCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAGCCTTTGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTANCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAACGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293023" ref_strand="+" ref_description="SGN-E293023 [cLET-12-L4]">
      <seq>tgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="41694" stop="42723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41994" g_stop="42056" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42311" g_stop="42423" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="176" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E293023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41994" e_stop="42056"/>
          <exon e_start="42311" e_stop="42423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAA</genome_strand>
        <mrna_strand>TGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718631" ref_strand="+" ref_description="SGN-E718631 [FC05BA05]">
      <seq>gctgccttgctcctccatgatgaggacattccaatcactgcaaagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaaacttgctgaaaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcacctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattaaaagctcctcccagtacaatttttgcttcttatttaaaaatttgacgagactttgttataccacccttgttgaaaagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="41718" stop="43769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42018" g_stop="42056" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="255" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43279" g_stop="43469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="446" r_length="191" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E718631" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42018" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATC</genome_strand>
        <mrna_strand>GCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAAAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAACTTGCTGAAAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCACCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAAAAGCTCCTCCCAGTACAATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATACCACCCTTGTTGAAAAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310790" ref_strand="+" ref_description="SGN-E310790 [cLEZ-15-C21]">
      <seq>atcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="42011" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42051" g_stop="42056" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42311" g_stop="42526" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="222" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="426" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="436"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E310790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42051" e_stop="42056"/>
          <exon e_start="42311" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>ATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224123" ref_strand="+" ref_description="SGN-E224123 [cLEL-19-K2](-)">
      <seq>tttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaaaagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="42028" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42328" g_stop="42526" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="403" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="421"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E224123" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42328" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>TTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAAAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587754" ref_strand="-" ref_description="SGN-E587754 [41292]">
      <seq>tggcctctattgtttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="42065" stop="43763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42365" g_stop="42526" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43279" g_stop="43463" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="350" r_length="185" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E587754" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587754" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42365" e_stop="42526"/>
          <exon e_start="43279" e_stop="43463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGC---TGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATG</genome_strand>
        <mrna_strand>TGGCCTCTATTGTTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357142" ref_strand="+" ref_description="SGN-E357142 [cTOS-22-N18]">
      <seq>cctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="42068" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42368" g_stop="42526" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43279" g_stop="43482" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="363" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="376"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E357142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42368" e_stop="42526"/>
          <exon e_start="43279" e_stop="43482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587891" ref_strand="-" ref_description="SGN-E587891 [41432]">
      <seq>tttgctaagcttgctgagaagaaaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaacccttgacataattatggtttatgaacatcagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="42077" stop="43773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42377" g_stop="42526" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43279" g_stop="43474" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="350" r_length="197" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E587891" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587891" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42377" e_stop="42526"/>
          <exon e_start="43279" e_stop="43474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGT---GCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAA-CCTTGACATAATTATGGTTTATGAACATCAGTTA</genome_strand>
        <mrna_strand>TTTGCTAAGCTTGCTGAGAAGAAAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCCTTGACATAATTATGGTTTATGAACATCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238650" ref_strand="+" ref_description="SGN-E238650 [cLEL-9-H17](-)">
      <seq>aaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattaaaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccatgttaaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggcctatgaacatcagttatgttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="42101" stop="43779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42401" g_stop="42526" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43279" g_stop="43475" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="323" r_length="197" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="347"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E238650" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42401" e_stop="42526"/>
          <exon e_start="43279" e_stop="43475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTAT</genome_strand>
        <mrna_strand>AACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAAAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCATGTTAAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGCCTATGAACATCAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593500" ref_strand="-" ref_description="SGN-E593500 [36732]">
      <seq>gaatgtcggtgctggtggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgattttttgttctttttcaaaagtttgatgagacttggttatagcaccgttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttctgttacttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="42125" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42417" g_stop="42526" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43279" g_stop="43487" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="318" r_length="209" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E593500" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593500" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42417" e_stop="42526"/>
          <exon e_start="43279" e_stop="43487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTC</genome_strand>
        <mrna_strand>GAATGTCGGT-GCTGGTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTTGTTCTTTTTCAAAAGTTTGATGAGACTTGGTTATAGCACCGTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTCTGTTACTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616478" ref_strand="-" ref_description="SGN-E616478 [66288]">
      <seq>actggtggtgctggtggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgacgatatgggattcagtctgtttgattaggagctactcccagtacgatttttggttcttttttaaaagtttgatgagacttggttatagcacccttgttaaggagatttttgatctgcttgtcactgttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="42170" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42470" g_stop="42526" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43279" g_stop="43488" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="267" r_length="210" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E616478" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616478" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42470" e_stop="42526"/>
          <exon e_start="43279" e_stop="43488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCC</genome_strand>
        <mrna_strand>ACTGGTGGTGCTGGTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGACGATATGGGATTCAGTCTGTTTGATTAGGAGCTACTCCCAGTACGATTTTTGGTTCTTTTTTAAAAGTTTGATGAGACTTGGTTATAGCACCCTTGTTAAGGAGATTTTTGATCTGCTTGTCACTGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739567" ref_strand="+" ref_description="SGN-E739567 [LC17DH02]">
      <seq>ccatgctgtagaacaactcgttaaagatgaatctcctgaaaaaatgacctcggatcaaattttctggttatatactatcatgataacggccacagtagtaaaacttgccctttggttatactgcagaagctcaggaaacaacattgtccgtgcctacgcaaaggatcactattttgacgtggttactaatgtagtcggactggtagcagctgtacttggcgataaattctactggtggattgatcctgttggtgccattatgcttgcactttataccatcaccaactggtcaggaactgttttagaaaacgcagtgtcactagtgggacaatcagccccacccgaatacttgcaaaagttaacgtatcttgtgataagacaccctcaagtgaagcgtattgatacagttcgagcctacacatttggtgtcttgtacttcgtagaggtagatattgaactcccggaagatttgcctttgaaagaagcacatgctatcggagaaactctacaaataaaactcgaaaaactccctgaagttgaacgagcattcgttcatctcgattttgaatgtgaacacaaaccagagcactctgttctcagcaggttaccaaacactgaaccttaggttcatgtttacgtttaagcccggataaaggaagagggttgttattattatcgacgattcggggttttgttgtttttttttacacacattttaactatataaatgtgtatattcatatgatccagcataagggattgttgaaaagagaggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="50608" stop="52296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50908" g_stop="51070" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51071" i_stop="51153" i_length="83">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.588" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51154" g_stop="51304" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="314" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51305" i_stop="51444" i_length="140">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51445" g_stop="51575" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="445" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51576" i_stop="51662" i_length="87">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51663" g_stop="51996" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="779" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E739567" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50908" e_stop="51070"/>
          <exon e_start="51154" e_stop="51304"/>
          <exon e_start="51445" e_stop="51575"/>
          <exon e_start="51663" e_stop="51996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGCTGTAGAACAACTCGTTAAAGATGAATCTCCTGAAAAAATGACCTCGGATCAAATTTTCTGGTTATATACTATCATGATAACGGCCACAGTAGTAAAACTTGCCCTTTGGTTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTACGCAAAGGTGTGTACTGTATCTTCGCGTTCTATTTTTGGCATCGTTATCCTTGTAGTCTAGACTCGTAACTTGAAGATACCTTTCGACAGGATCACTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTGTACTTGGCGATAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATGCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAACGCAGGTATCGTCTCATTCCTGCACAACTTTAGTTTGCATCGATAGCCTGGTTGAAAAACGGAGTGTTCTACTAGAAGATTCTGTTAGTTTTGTTTCGTCATTATACTATGTTTGATTCCATACTGAACGACGTTCTTCATGTAGTGTCACTAGTGGGACAATCAGCCCCACCCGAATACTTGCAAAAGTTAACGTATCTTGTGATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTCGTAGAGGTCAGTCTCTGAAAAAACCATCTATAATAGCACACGAATGGTTCTTCTATCGATGATTTTGAGACTCGTTTGCTTACTGTAACGTAGGTAGATATTGAACTCCCGGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAACTCGAAAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTACCAAACACTGAACCTTAGGTTCATGTTTACGTTTAAGCCCGGATAAAGGAAGAGGGTTGTTATTATTATCGACGATTCGGGGTTTTGTTGTTTTTTTTTACACACATTTTAACTATATAAATGTGTATATTCATATGATCCAGCATAAGGGATTGTTGAAAAGAGAGGATAT</genome_strand>
        <mrna_strand>CCATGCTGTAGAACAACTCGTTAAAGATGAATCTCCTGAAAAAATGACCTCGGATCAAATTTTCTGGTTATATACTATCATGATAACGGCCACAGTAGTAAAACTTGCCCTTTGGTTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTACGCAAAG...................................................................................GATCACTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTGTACTTGGCGATAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATGCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAACGCAG............................................................................................................................................TGTCACTAGTGGGACAATCAGCCCCACCCGAATACTTGCAAAAGTTAACGTATCTTGTGATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTCGTAGAG.......................................................................................GTAGATATTGAACTCCCGGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAACTCGAAAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTACCAAACACTGAACCTTAGGTTCATGTTTACGTTTAAGCCCGGATAAAGGAAGAGGGTTGTTATTATTATCGACGATTCGGGGTTTTGTTGTTTTTTTTTACACACATTTTAACTATATAAATGTGTATATTCATATGATCCAGCATAAGGGATTGTTGAAAAGAGAGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428024" ref_strand="+" ref_description="SGN-E428024 [STM-49-F17]">
      <seq>gttatatactatcatgataacggccacagtggtaaaacttgccctttggctatactgcagaagctcaggaaacaacattgtccgtgcctatgcaaaggatcattattttgacgtggttactaatgtagtcggactggtagcagctatacttggcgacaaattctactggtggattgatcctgttggtgccattattcttgcactttataccatcaccaactggtcaggaactgttttagaaaatgcagtgtcactggtgggacagtcagccccgcctgaatacttgcaaaagttaacgtatcttgttataagacaccctcaagtgaagcgtattgatacagttcgagcctacacatttggtgtcttgtactttgtagaggttgatattgaactcccagaagatttgcctttgaaagaagcacatgctatcggagaaactctacaaataaagctcgagaaactccctgaagttgaacgagcattcgttcatctcgattttgaatgtgaacacaaaccagagcactctgttctcagcaggctgccaaacactgaaccttaggctcatggttacgttatgcccggataacggaagagggttgttattactttcgacgattccggggtttgnntgttttttgataaacactttaactatataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="50674" stop="52209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50974" g_stop="51070" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51071" i_stop="51153" i_length="83">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.588" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51154" g_stop="51304" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="248" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51305" i_stop="51444" i_length="140">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51445" g_stop="51575" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="379" r_length="131" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51576" i_stop="51662" i_length="87">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51663" g_stop="51946" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="661" r_length="282" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E428024" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50974" e_stop="51070"/>
          <exon e_start="51154" e_stop="51304"/>
          <exon e_start="51445" e_stop="51575"/>
          <exon e_start="51663" e_stop="51946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATATACTATCATGATAACGGCCACAGTAGTAAAACTTGCCCTTTGGTTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTACGCAAAGGTGTGTACTGTATCTTCGCGTTCTATTTTTGGCATCGTTATCCTTGTAGTCTAGACTCGTAACTTGAAGATACCTTTCGACAGGATCACTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTGTACTTGGCGATAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATGCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAACGCAGGTATCGTCTCATTCCTGCACAACTTTAGTTTGCATCGATAGCCTGGTTGAAAAACGGAGTGTTCTACTAGAAGATTCTGTTAGTTTTGTTTCGTCATTATACTATGTTTGATTCCATACTGAACGACGTTCTTCATGTAGTGTCACTAGTGGGACAATCAGCCCCACCCGAATACTTGCAAAAGTTAACGTATCTTGTGATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTCGTAGAGGTCAGTCTCTGAAAAAACCATCTATAATAGCACACGAATGGTTCTTCTATCGATGATTTTGAGACTCGTTTGCTTACTGTAACGTAGGTAGATATTGAACTCCCGGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAACTCGAAAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTACCAAACACTGAACCTTAGGTTCATGTTTACGTTTAAGCCCGGATAAAGGAAGAGGGTTGTTATTATTATCGACGATTCGGGGTTTTGTTGTTTTTTTTTACACACATTTTAACTATATAAAT</genome_strand>
        <mrna_strand>GTTATATACTATCATGATAACGGCCACAGTGGTAAAACTTGCCCTTTGGCTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTATGCAAAG...................................................................................GATCATTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTATACTTGGCGACAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATTCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAATGCAG............................................................................................................................................TGTCACTGGTGGGACAGTCAGCCCCGCCTGAATACTTGCAAAAGTTAACGTATCTTGTTATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTTGTAGAG.......................................................................................GTTGATATTGAACTCCCAGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAGCTCGAGAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGCTGCCAAACACTGAACCTTAGGCTCATGGTTACG-TTATGCCCGGATAACGGAAGAGGGTTGTTATTACTTTCGACGATTCCGGGGTTTG-NNTGTTTTTTGATAAACACTTTAACTATATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478500" ref_strand="+" ref_description="SGN-E478500 [cSTD-5-B19]">
      <seq>gttatatactatcatgataacggccacagtggtaaaacttgccctttggctatactgcagaagctcaggaaacaacattgtccgtgcctatgcaaaggatcattattttgacgtggttactaatgtagtcggactggtagcagctatacttggcgacaaattctactgggggattgatcctgttggtgccattattcttgcactttataccatcaccaactggtcaggaactgttttagaaaatgcagtgtcactggtgggacagtcagccccgcctgaatacttgcaaaagttaacgtatcttgttataagacaccctcaagtgaagcgtattgatacagttcgagcctacacatttggtgtcttgtactttgtagagggtgatattgaactcccagaagatttgcctttgaaagaagcacatgctatcggagaaactctacaaataaagctcgagaaactccctgaagttgaacgagcattcgttcatctcgattttgaatgtgaacacaaaccagagcactctgttctcagcaggctggcaaacactgaacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="50674" stop="52140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50974" g_stop="51070" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51071" i_stop="51153" i_length="83">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.588" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51154" g_stop="51304" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="248" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51305" i_stop="51444" i_length="140">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51445" g_stop="51575" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="379" r_length="131" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51576" i_stop="51662" i_length="87">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51663" g_stop="51840" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="557" r_length="178" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E478500" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50974" e_stop="51070"/>
          <exon e_start="51154" e_stop="51304"/>
          <exon e_start="51445" e_stop="51575"/>
          <exon e_start="51663" e_stop="51840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATATACTATCATGATAACGGCCACAGTAGTAAAACTTGCCCTTTGGTTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTACGCAAAGGTGTGTACTGTATCTTCGCGTTCTATTTTTGGCATCGTTATCCTTGTAGTCTAGACTCGTAACTTGAAGATACCTTTCGACAGGATCACTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTGTACTTGGCGATAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATGCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAACGCAGGTATCGTCTCATTCCTGCACAACTTTAGTTTGCATCGATAGCCTGGTTGAAAAACGGAGTGTTCTACTAGAAGATTCTGTTAGTTTTGTTTCGTCATTATACTATGTTTGATTCCATACTGAACGACGTTCTTCATGTAGTGTCACTAGTGGGACAATCAGCCCCACCCGAATACTTGCAAAAGTTAACGTATCTTGTGATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTCGTAGAGGTCAGTCTCTGAAAAAACCATCTATAATAGCACACGAATGGTTCTTCTATCGATGATTTTGAGACTCGTTTGCTTACTGTAACGTAGGTAGATATTGAACTCCCGGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAACTCGAAAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTACCAAACACTGAACCTT</genome_strand>
        <mrna_strand>GTTATATACTATCATGATAACGGCCACAGTGGTAAAACTTGCCCTTTGGCTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTATGCAAAG...................................................................................GATCATTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTATACTTGGCGACAAATTCTACTGGGGGATTGATCCTGTTGGTGCCATTATTCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAATGCAG............................................................................................................................................TGTCACTGGTGGGACAGTCAGCCCCGCCTGAATACTTGCAAAAGTTAACGTATCTTGTTATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTTGTAGAG.......................................................................................GGTGATATTGAACTCCCAGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAGCTCGAGAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGCTGGCAAACACTGAACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428025" ref_strand="-" ref_description="SGN-E428025 [STM-49-F17]">
      <seq>cgtggttactaatgtagtcggactggtagcagctatacttggcgacaaattctactggtggattgatcctgttggtgccattattcttgcactttataccatcaccaactggtcaggaactgttttagaaaatgcagtgtcactggtgggacagtcagccccgcctgaatacttgcaaaagttaacgtatcttgttataagacaccctcaagtgaagcgtattgatacagttcgagcctacacatttggtgtcttgtactttgtagaggttgatattgaactcccagaagatttgcctttgaaagaagcacatgctatcggagaaactctacaaataaagctcgagaaactccctgaagttgaacgagcattcgttcatctcgattttgaatgtgaacacaaaccagagcactctgttctcagcaggctgccaaacactgaaccttaggctcatggttacgttatgcccggataacggaggagggttgttattactttcgacgattcggggttttgttgtttttttgataaacactttaactatataaatgtgtatattcatatgatccagcataagggattgttgaaagagaggatgaagaaaacttggatttatttcaaaataagatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="50868" stop="52328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51168" g_stop="51304" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51305" i_stop="51444" i_length="140">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51445" g_stop="51575" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="268" r_length="131" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51576" i_stop="51662" i_length="87">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51663" g_stop="52029" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="632" r_length="364" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E428025" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428025" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51168" e_stop="51304"/>
          <exon e_start="51445" e_stop="51575"/>
          <exon e_start="51663" e_stop="52029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTGTACTTGGCGATAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATGCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAACGCAGGTATCGTCTCATTCCTGCACAACTTTAGTTTGCATCGATAGCCTGGTTGAAAAACGGAGTGTTCTACTAGAAGATTCTGTTAGTTTTGTTTCGTCATTATACTATGTTTGATTCCATACTGAACGACGTTCTTCATGTAGTGTCACTAGTGGGACAATCAGCCCCACCCGAATACTTGCAAAAGTTAACGTATCTTGTGATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTCGTAGAGGTCAGTCTCTGAAAAAACCATCTATAATAGCACACGAATGGTTCTTCTATCGATGATTTTGAGACTCGTTTGCTTACTGTAACGTAGGTAGATATTGAACTCCCGGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAACTCGAAAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTACCAAACACTGAACCTTAGGTTCATGTTTACGTTTAAGCCCGGATAAAGGAAGAGGGTTGTTATTATTATCGACGATTCGGGGTTTTGTTGTTTTTTTTTACACACATTTTAACTATATAAATGTGTATATTCATATGATCCAGCATAAGGGATTGTTGAAAAGAGAGGATATCAAGAACATGGATTTATTTTCAGATGATAGGTC</genome_strand>
        <mrna_strand>CGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTATACTTGGCGACAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATTCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAATGCAG............................................................................................................................................TGTCACTGGTGGGACAGTCAGCCCCGCCTGAATACTTGCAAAAGTTAACGTATCTTGTTATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTTGTAGAG.......................................................................................GTTGATATTGAACTCCCAGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAGCTCGAGAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGCTGCCAAACACTGAACCTTAGGCTCATGGTTACG-TTATGCCCGGATAACGGAGGAGGGTTGTTATTACTTTCGACGATTCGGGGTTTTGTTG-TTTTTTTGATAAACACTTTAACTATATAAATGTGTATATTCATATGATCCAGCATAAGGGATTGTTG-AAAGAGAGGATGAAGAAAACTTGGATTTATTTCAAAATAAGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316998" ref_strand="+" ref_description="SGN-E316998 [cTOA-27-A23]">
      <seq>tggagttcaccggatcttcaccgtccatcggaaatcattaccggcgaatccatttcgcagtgaaaaatctgccggagttgtagcaattccggtgatggatcaatggagaactaaaacaccggagaaaccgatccaaaatcgcatggcgcgatcactgcagtccctgaaagacgtcagagaagcttctcagaagctccggaaacacgatctgatccaacgcgaggtttctgatccgttattaagctacggtgaagtgaaatctccattggtagctggatcgccggtttctgaacggaagaagcatgtgaactcggtaaagctgccggaaaagtatgaaatgttggaaaaattcttcaatagcatggatagttcaattcggctgctacatttgaagggatctgcaacaactttcactaatattagtgcgaaagtagagagtttgatcgataagaggtttacttgcagtcatttagctcagctgaagtttattttacctgaagccattgagataaagaagattctcaagcacgatgagcgcagttggtgcatgaagccggatctttatatcactttaaatgcaaatgcagttgataatagtgagaagtggaaatctaacagtagcagtgttctattgaggaaatattccgctctcggctcttggatttcttcaagtcacaccctgagggtgatgacanttcctgagggatgctgccaggcccattcactcagtctaagcaagtagtgacccactcatgtagaccttctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="55417" stop="58378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55717" g_stop="56047" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56048" i_stop="56736" i_length="689">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56737" g_stop="56856" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="450" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56857" i_stop="56950" i_length="94">
            <donor d_prob="0.571" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56951" g_stop="57185" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="684" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57186" i_stop="57993" i_length="808">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57994" g_stop="58078" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="769" r_length="85" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E316998" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55717" e_stop="56047"/>
          <exon e_start="56737" e_stop="56856"/>
          <exon e_start="56951" e_stop="57185"/>
          <exon e_start="57994" e_stop="58078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTCACCGGATCTTCACCGTCCGATCGGAAATCATTACCGGCGAATCCATTTCGCAGTGAAAAATCTGCCGGAGTTGTAGCAATTCCGGTGATGGATCAATGGAGAACTAAAACACCGGAGAAACCGATCCAAAATCGCATGGCGCGATCACTGCAGTCCCTGAAAGACGTCAGAGAAGCTTCTCAGAAGCTCCGGAAACACGATCTGATCCAACGCGAGGTTTCTGATCCGTTATTAAGCTACGGTGAAGTGAAATCTCCATTGGTAGCTGGATCGCCGGTTTCTGAACGGAAGAAGCATGTGAACTCGGTAAAGCTGCCGGAAAAGTGAGTGTTTCCTGTACTTTCCGTTTTGATGATTTATTCACTTTGTGTCTCTTTGACCAGATACTTACTTGAATATTCTTCAATAAGTTCATCGCAATTGTTTATTTATTTATGCTTTTGATATGAAGTGAAACTTAATTTAAATAAATTTTCTTCAATATGTTCATCACAATTGTTTATTTATTTATTTTGCTTTTGATGCGAAGAAAACTTAGTTGAATAAGTTTTATCCTTTGAAGAAATAATAAGATATTTAGATTTAACAATCGAGGCTTGCTCAAGTGGTTAAGCATCGTTGATTGTGAGCTTAAAGTCACACTGGATGGTAAGTAGGAACACTACTGATCTTATGCCGGATTGGGTAGGACTTTGGAAAGCAAAAGTAACAGAAAATTTGGGGACTCAGGGAATTTGGATGTAGAATCAATATTTGTAAATTAAGTAAAAAATATATATAATAATAAAAAAAGCTACTATATGTGATATAATTAACAATTCAAAAGTTTATATGAAAAACTTGTTTGACTCTCGAAATCCAAATACGGCACATAGATTGGGATGGAGGGAGTAGTTGTTTCAATATATTAGCTTTTGAAAGTATTAGTCTTATTTGTTTATTAGCTAAGAGTGATGACAGGGTAAGAGGCTTGGTTGAGTTTTTCTTAATGTGTGTTTCTATTACTGTATAGGTATGAAATGTTGGAAAAATTCTTCAATAGCATGGATAGTTCAATTCGGCTGCTACATTTGAAGGGATCTGCAACAACTTTCACTAATATTAGTGCGAAAGTAGAGAGTTTGATCGATAAGTATGAAGATCTAATGATGTTTGAACATTTTCATTGATGGTGTTTGCTGTACTGAGAGGATTGTTAATAATTTTGTTCTTTTTGAACTTTTTAGGAGGTTTACTTGCAGTCATTTAGCTCAGCTGAAGTTTATTTTACCTGAAGCCATTGAGATAAAGAAGATTCTCAAGCACGATGAGCGCAGTTGGTGCATGAAGCCGGATCTTTATATCACTTTAAATGCAAATGCAGTTGATAATAGTGAGAAGTGGAAATCTAACAGTAGCAGTGTTCTATTGAGGAAAATATTCCGCTCTCGGCTCTTGGATTTCTTCAAGTCACACCCTGAGGTAATCAATTTTTCTGATGTTTTGATTGTTTGTGTTGAACAATCTCTCATGGTAGGAGTAAGTTTTGCGTACACTGAACCCTCCCAAACCTCACTTGTAGGATTACACTAAGTATATTGTTGTTAAAGATTGAACTATCTGCCAGAATATAGCTGATGCAGTATTGAGATTTATTGGCTTGAATTCATGTTATTTAGAAAGACTAATATGTTCTGAGATGCTATTTGACTTGCTAAGTGCTCTTGTTATTTCAAGCTCATTTTCTGTAAGACATCCCGACCAGTGTTTCATTTGCAAACAATTGCTCTTGAGCATATTAAGAGGAATATGAACACTTTTAACAGCATAGCAGCAGAAGTTTCAAATGGAATATGAGATTTTAAGCTGGAGGTCTTTCATTATACTATACGTTCTTGGGAAAGTGATGCAATTGTTTCTGGCATTTAGATTTGTGCAGTGCCTGTGCAACATTGTAGGTGCTTTAGTCCAGAAAATACTAAACTTTGTATGAGAATGAAGCTATACGTGAAGCACCTAAAGAGTGGTAATACTGTTTCATGAAGCTACAGAGTACTTCAGTGGCTGGCCTGCCATATTGTATGAAAGGAATAGCTTTTGATAAGAAAATTTGTGTTGAATTTGTATTGTGTTTTACTCTGACTATCAGCATTGAATAACCAGCACACACACTTTTACATATATGAGCACCATGTTGTCAGCTTAGACATCGTTGAAGTATAATTAAATGTTTTCCTGTAAATTTTATTTCCATGATAAACAAATAAGATAATTACTGTTTCTGTTTCAGGGTGATGACA-TTCCTGAGGGAATGCTGCCAGGCCCATTCACTCAGTCTAAGCAAGTAGTGACCAACTCATGTAGACCTTCTGGCT</genome_strand>
        <mrna_strand>TGGAGTTCACCGGATCTTCACCGTCC-ATCGGAAATCATTACCGGCGAATCCATTTCGCAGTGAAAAATCTGCCGGAGTTGTAGCAATTCCGGTGATGGATCAATGGAGAACTAAAACACCGGAGAAACCGATCCAAAATCGCATGGCGCGATCACTGCAGTCCCTGAAAGACGTCAGAGAAGCTTCTCAGAAGCTCCGGAAACACGATCTGATCCAACGCGAGGTTTCTGATCCGTTATTAAGCTACGGTGAAGTGAAATCTCCATTGGTAGCTGGATCGCCGGTTTCTGAACGGAAGAAGCATGTGAACTCGGTAAAGCTGCCGGAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATGTTGGAAAAATTCTTCAATAGCATGGATAGTTCAATTCGGCTGCTACATTTGAAGGGATCTGCAACAACTTTCACTAATATTAGTGCGAAAGTAGAGAGTTTGATCGATAA..............................................................................................GAGGTTTACTTGCAGTCATTTAGCTCAGCTGAAGTTTATTTTACCTGAAGCCATTGAGATAAAGAAGATTCTCAAGCACGATGAGCGCAGTTGGTGCATGAAGCCGGATCTTTATATCACTTTAAATGCAAATGCAGTTGATAATAGTGAGAAGTGGAAATCTAACAGTAGCAGTGTTCTATTGAGG-AAATATTCCGCTCTCGGCTCTTGGATTTCTTCAAGTCACACCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATGACANTTCCTGAGGG-ATGCTGCCAGGCCCATTCACTCAGTCTAAGCAAGTAGTGACCCACTCATGTAGACCTTCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732151" ref_strand="+" ref_description="SGN-E732151 [LB01BF08]">
      <seq>ctcgggctcgtttctctagcttcaataccccttaatgtcccaagttccaccaagaagaaaacagtagcatgttctgatgctcctaagttatctctaaaacaaactagcatcatgaaatgctcagcaggaggggttgttttggctagttcaccatgccatccacctgctcttcctatgattgaagccaaaaagggagaagatggttctacatccgctccagcaacccctatgctcgaacctcctaagagatgttacatgagtccagatgatccagctgaatcaccaataaaactagctagacgcccgtcaactagaaggtcgttgctcttcggtactcctgtgaagagtgcaaatgctggtgataaagtctgcgagaatggaaggttttcaactgataatgatattcttgacattcttcctgagaatcttctgcaatcgataggagaaaaggagagtgaagcactagcggagcaaaatccagccatatcccaagcaaaaaggcgcaaacagatgattgcttgtttgcctcacctctttgacatgatttatttcctgtttcaatctattaaacgttctgtcatgacgaaagaggagctcatgcacagagtaatttcaagccatttagagataacggacaaaagtgaagttgaacagcaactcctattactgcaagaattggctcctgaatggatttatgagaaaccagcatctaatggaactcttctcttacttgttagcaagatatcaaatcctgacacaattcgttcaagactagcagaagccaattgagagaaacnagaaactagtgatttgtactttattttaccaaatagacgtgtaaggaataacaatttagaaaaaagtgtaaataataagtgttttgtctaattaatacagtaccacttgcgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="57925" stop="60037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58225" g_stop="58662" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58663" i_stop="58815" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58816" g_stop="59017" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="640" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59018" i_stop="59114" i_length="97">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59115" g_stop="59205" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="731" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59206" i_stop="59555" i_length="350">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59556" g_stop="59737" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="912" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E732151" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58225" e_stop="58662"/>
          <exon e_start="58816" e_stop="59017"/>
          <exon e_start="59115" e_stop="59205"/>
          <exon e_start="59556" e_stop="59737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGGCTCGTTTCTCCAGCTTCAATACCCCTTAATGTCCCAAGTTCCACCAAGAAGAAAACAGTAGCATGTTCTGATGCTCCTAAGTTATCTCTAAAACAAACTAGCATCATGAAATGCTCAGCAGGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTCCAGCAACCCCTATGCTCGAACCTCCTAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCAATAAAACTAGCTAGACGCCCGTCAACTAGAAGGTCGTTGCTCTTCGGTACTCCTGTGAAGAGTGCAAATGCTGGTGATAAAGTCTGCGAGAATGGAAGGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGAGAATCTTCTGCAATCGGTAAGAAAACACACACTTGCATATCAATCTTCCTTGATAAAATTTTTTAAGATCAACTACATTGGATTCATTTAAATTTTCATTCCTCAACGTAGCTGAACTACAAAATATTCTGTTTTATGCAACAAGAAGCTAACTTCCATGATTTCACAGATAGGAGAAAAGGAGAGTGAAGCACTAGCGGAGCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCAAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGAAAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAAGTAAGCCACTAAGCCCGGTTGACAATTTTCAGAAGCCTGTAGTCCTTTTGAGATTCATTGGAGCTTCTTTCTGAATCTTGATGTTTCATTACTACAGGTGAAGTTGAACAGCAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAAACCAGCATCTAATGGAACTCTTCTCTTACTGTAAGCTACAATTCTCAAATTCCAATCATTTGTTTGCTTTGTCCAAAGCAATGATGAGTTTAGAAGATCTATATTTGCCAGTTTCTTGATCAATTTTCGTCGTTAGAATAGATTAGAGTCTCACATTGGTCGGGAAATGGAGTGATAATCTCTAGCATTTAAGGTTGGGTTAGACCCAAGAGTCATATTTCACGTGGTATTAGAACCAAGGGTCGTGTTATAGCTTAAGCCCATAGAGGTATTACAGTTCCGTTCCATATTGATTGAGAAATTAGCTAGTGCTTACTCTTTCCGCGTGAGCTAACTTTTAGAATTAAGCTACATCTAATATCTATATCTTTATTTTGCAGTGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACAAGAAACTAGTGATTTGTACTTTATTTTACCAAATAGACGTGTAAGGAATAACAATTTAGAAAAAAGTTGTAAATAATAAGTGTTTTGTCTAATTAATACAGTACCACTTGCGTTGC</genome_strand>
        <mrna_strand>CTCGGGCTCGTTTCTCTAGCTTCAATACCCCTTAATGTCCCAAGTTCCACCAAGAAGAAAACAGTAGCATGTTCTGATGCTCCTAAGTTATCTCTAAAACAAACTAGCATCATGAAATGCTCAGCAGGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTCCAGCAACCCCTATGCTCGAACCTCCTAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCAATAAAACTAGCTAGACGCCCGTCAACTAGAAGGTCGTTGCTCTTCGGTACTCCTGTGAAGAGTGCAAATGCTGGTGATAAAGTCTGCGAGAATGGAAGGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGAGAATCTTCTGCAATCG.........................................................................................................................................................ATAGGAGAAAAGGAGAGTGAAGCACTAGCGGAGCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCAAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGAAAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAA.................................................................................................GTGAAGTTGAACAGCAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAAACCAGCATCTAATGGAACTCTTCTCTTACT..............................................................................................................................................................................................................................................................................................................................................................TGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACNAGAAACTAGTGATTTGTACTTTATTTTACCAAATAGACGTGTAAGGAATAACAATTTAGAAAAAAG-TGTAAATAATAAGTGTTTTGTCTAATTAATACAGTACCACTTGCGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726695" ref_strand="+" ref_description="SGN-E726695 [LA12CC05]">
      <seq>tctggctcgactctccaacttcaataccccattactgtcccaagttccaccatgaataaaacagtatcatgttcgtgatgctcctaaattatctctaaaacataactagcatcatgaaatgctcagcacgaggggttgttttggctagttcaccatgccatccacctgctcttcctatgattgaagccaaaaagggagaagatggttctacatccgctctcagcaacccctatgctcgaacctcataagagatgttacatgagtccagatgatccagctgaatcacctataaaactagctagacacccgtcaactagaagggcggtgctcttctgaactcctgtgaagagtgcaaatgctgatgatatagtctgcgacaatggaacgttttcaactgataatgatattcttgacattcttcctgacaatcttctgctatcgataggacaaaaggagagtgaagcactatcggatcaaaatccagccatatcccaagcaaaaaggcgcgaacagatgattgcttgtttgcctcacctctttgacatgatttatttcctgtttcaatctattaaacgttctgtcatgacgatagaggagctcatgcacagagtaatttcaagccatttagagataacggacaaaagtgaagttgaacagacaactcctattactgcaagaattggctcctgaatggatttatgagagaccagcatctaatggaactcttctcttacttgttagcaagatatcaaatcctgacacaattcgttcaagactagcagaagccaattgagagaaacaagaaactagtgatttgtactttattttaccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="57926" stop="59955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58226" g_stop="58662" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58663" i_stop="58815" i_length="153">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58816" g_stop="59017" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="643" r_length="202" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59018" i_stop="59114" i_length="97">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59115" g_stop="59205" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="735" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59206" i_stop="59555" i_length="350">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59556" g_stop="59655" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="835" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="SGN-E726695" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58226" e_stop="58662"/>
          <exon e_start="58816" e_stop="59017"/>
          <exon e_start="59115" e_stop="59205"/>
          <exon e_start="59556" e_stop="59655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGCTCGTTTCTCCAGCTTCAATACCCC-TTAATGTCCCAAGTTCCACCAAGAAGAAAACAGTAGCATGTTC-TGATGCTCCTAAGTTATCTCTAAAACA-AACTAGCATCATGAAATGCTCAGCAGGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTC-CAGCAACCCCTATGCTCGAACCTCCTAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCAATAAAACTAGCTAGACGCCCGTCAACTAGAAGGTCGTTGCTCTTCGGTACTCCTGTGAAGAGTGCAAATGCTGGTGATAAAGTCTGCGAGAATGGAAGGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGAGAATCTTCTGCAATCGGTAAGAAAACACACACTTGCATATCAATCTTCCTTGATAAAATTTTTTAAGATCAACTACATTGGATTCATTTAAATTTTCATTCCTCAACGTAGCTGAACTACAAAATATTCTGTTTTATGCAACAAGAAGCTAACTTCCATGATTTCACAGATAGGAGAAAAGGAGAGTGAAGCACTAGCGGAGCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCAAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGAAAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAAGTAAGCCACTAAGCCCGGTTGACAATTTTCAGAAGCCTGTAGTCCTTTTGAGATTCATTGGAGCTTCTTTCTGAATCTTGATGTTTCATTACTACAGGTGAAGTTGAACAG-CAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAAACCAGCATCTAATGGAACTCTTCTCTTACTGTAAGCTACAATTCTCAAATTCCAATCATTTGTTTGCTTTGTCCAAAGCAATGATGAGTTTAGAAGATCTATATTTGCCAGTTTCTTGATCAATTTTCGTCGTTAGAATAGATTAGAGTCTCACATTGGTCGGGAAATGGAGTGATAATCTCTAGCATTTAAGGTTGGGTTAGACCCAAGAGTCATATTTCACGTGGTATTAGAACCAAGGGTCGTGTTATAGCTTAAGCCCATAGAGGTATTACAGTTCCGTTCCATATTGATTGAGAAATTAGCTAGTGCTTACTCTTTCCGCGTGAGCTAACTTTTAGAATTAAGCTACATCTAATATCTATATCTTTATTTTGCAGTGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACAAGAAACTAGTGATTTGTACTTTATTTTACCAAAT</genome_strand>
        <mrna_strand>TCTGGCTCGACTCTCCAACTTCAATACCCCATTACTGTCCCAAGTTCCACCATGAATAAAACAGTATCATGTTCGTGATGCTCCTAAATTATCTCTAAAACATAACTAGCATCATGAAATGCTCAGCACGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTCTCAGCAACCCCTATGCTCGAACCTCATAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCTATAAAACTAGCTAGACACCCGTCAACTAGAAGGGCGGTGCTCTTCTGAACTCCTGTGAAGAGTGCAAATGCTGATGATATAGTCTGCGACAATGGAACGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGACAATCTTCTGCTATCG.........................................................................................................................................................ATAGGACAAAAGGAGAGTGAAGCACTATCGGATCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCGAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGATAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAA.................................................................................................GTGAAGTTGAACAGACAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAGACCAGCATCTAATGGAACTCTTCTCTTACT..............................................................................................................................................................................................................................................................................................................................................................TGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACAAGAAACTAGTGATTTGTACTTTATTTTACCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733774" ref_strand="+" ref_description="SGN-E733774 [LB10DF07]">
      <seq>ggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattcccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcatatcaattatttcggaatattgtgagagaagagcaataatttggtgttcaatttgcatattgtcttcatatctcataacaatagagaataaaagaagagaaaacagactgttttgtactttggattgtatctggaaaattgttacttaaagtttgtaccatctattattttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="62417" stop="59541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62117" g_stop="61945" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="266" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60472" g_stop="60341" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="398" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60243" g_stop="59842" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="800" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="801" polyA_stop="812"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E733774" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62117" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60341"/>
          <exon e_start="60243" e_stop="59842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</genome_strand>
        <mrna_strand>GGAAAAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371634" ref_strand="+" ref_description="SGN-E371634 [TUS-29-C4](-)">
      <seq>gacctgcctatgctcaactgaagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattcccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcatatcaattatttcggaatattgtgagagaagagcaataatttggtgttcaatttgcatattgtcttcatatctcataacaatagagaataaaagaagagaaaacagactgttttgtactttggattgtatctggaaaattgttacttaaagtttgtaccatctattattttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="62375" stop="59541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62075" g_stop="61945" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="224" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60472" g_stop="60341" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="356" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60243" g_stop="59842" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="758" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E371634" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62075" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60341"/>
          <exon e_start="60243" e_stop="59842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</genome_strand>
        <mrna_strand>GACCTGCCTATGCTCAACTGAAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398565" ref_strand="+" ref_description="SGN-E398565 [TUS-24-L22](-)">
      <seq>ggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagttaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattcccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcatatcaattatttcggaatattgtgagagaagagcaataatttggtgttcaatttgcatattgtcttcatatctcataacaatagagaataaaagaagagaaaacagactgttttgtactttggattgtatctggaaaattgttacttaaagtttgtaccatctattatttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="62265" stop="59541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61965" g_stop="61945" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="114" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60472" g_stop="60341" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="246" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60243" g_stop="59842" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="648" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="659"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E398565" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61965" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60341"/>
          <exon e_start="60243" e_stop="59842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</genome_strand>
        <mrna_strand>GGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGTTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395698" ref_strand="+" ref_description="SGN-E395698 [TUS-17-K22](-)">
      <seq>aatggacgactgttgccaaactcataaggttgaaagctgtactaccccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctttcttgataccggggtagtagtattcccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcatatcaattatttctgaatattgtgagagaagagcaataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="60668" stop="59676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60368" g_stop="60341" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60243" g_stop="59976" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="296" r_length="268" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E395698" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60368" e_stop="60341"/>
          <exon e_start="60243" e_stop="59976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATT</genome_strand>
        <mrna_strand>AATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACCCCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTTTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCTGAATATTGTGAGAGAAGAGCAATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710300" ref_strand="+" ref_description="SGN-E710300 [FA55AA09]">
      <seq>cttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattccccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcataatcaattatttcggaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64363" stop="59696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64063" g_stop="63986" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62829" g_stop="62726" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="182" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="348" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="441" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60472" g_stop="60341" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="573" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60243" g_stop="59996" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="823" r_length="250" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E710300" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64063" e_stop="63986"/>
          <exon e_start="62829" e_stop="62726"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60341"/>
          <exon e_start="60243" e_stop="59996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATT-CCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCAT-ATCAATTATTTCGGAATATT</genome_strand>
        <mrna_strand>CTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATAATCAATTATTTCGGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246728" ref_strand="+" ref_description="SGN-E246728 [cLEF-45-H5]">
      <seq>ccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagtagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattcccggactatcatcgacccctncaccattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64359" stop="59761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64059" g_stop="63986" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62111" i_length="1875">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="240" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="333" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60472" g_stop="60341" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="465" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60243" g_stop="60061" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="648" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E246728" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64059" e_stop="63986"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60341"/>
          <exon e_start="60243" e_stop="60061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCT</genome_strand>
        <mrna_strand>CCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTNCACCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371635" ref_strand="+" ref_description="SGN-E371635 [TUS-29-C4]">
      <seq>aaagagagagagatggcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64379" stop="59814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64079" g_stop="63986" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62829" g_stop="62726" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="198" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="364" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="457" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60472" g_stop="60341" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="589" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60243" g_stop="60114" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="719" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E371635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64079" e_stop="63986"/>
          <exon e_start="62829" e_stop="62726"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60341"/>
          <exon e_start="60243" e_stop="60114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTC</genome_strand>
        <mrna_strand>AAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395699" ref_strand="+" ref_description="SGN-E395699 [TUS-17-K22]">
      <seq>cctttctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagtatatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcttaaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64355" stop="59878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64060" g_stop="63986" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62111" i_length="1875">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="241" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="334" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60472" g_stop="60341" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="466" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60243" g_stop="60178" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="532" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E395699" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64060" e_stop="63986"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60341"/>
          <exon e_start="60243" e_stop="60178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAAC</genome_strand>
        <mrna_strand>CCTTTCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCTTAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280534" ref_strand="+" ref_description="SGN-E280534 [cLER-1-A20]">
      <seq>aaagagagagagatggcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64379" stop="60044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64079" g_stop="63986" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62829" g_stop="62726" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="198" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="364" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="457" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60472" g_stop="60344" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="586" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E280534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64079" e_stop="63986"/>
          <exon e_start="62829" e_stop="62726"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCAT</genome_strand>
        <mrna_strand>AAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271596" ref_strand="+" ref_description="SGN-E271596 [cLEM-23-B10]">
      <seq>agagagagagatggcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64377" stop="60047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64077" g_stop="63986" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62829" g_stop="62726" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="196" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="362" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="455" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60472" g_stop="60347" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="581" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E271596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64077" e_stop="63986"/>
          <exon e_start="62829" e_stop="62726"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACT</genome_strand>
        <mrna_strand>AGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475199" ref_strand="+" ref_description="SGN-E475199 [cSTB-39-F7]">
      <seq>gcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttatgtcagttgaatttgaagaagacgggaggatctcatgtgagctgcagctcggagaatgagagttgtacttctgcatcttccgagcattcacaggaacctgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacttgcctatgctcgactggagctctgataactgcttctggaaatccgatttctgaaccaaaagcaattgccttagatggaaatgaaagccctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgaatgccccaattgttatggacgagggaaactagtatgtcctgtatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64364" stop="60142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64064" g_stop="63986" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.860" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62829" g_stop="62726" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="183" r_length="104" r_score="0.894"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615">
            <donor d_prob="0.441" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="349" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="442" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60472" g_stop="60442" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="473" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E475199" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64064" e_stop="63986"/>
          <exon e_start="62829" e_stop="62726"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTT</genome_strand>
        <mrna_strand>GCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTATGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTTGAAGAAGACGGGAGGATCTCATGTGAGCTGCAGCTCGGAGAATGAGAGTTGTACTTCTGCATCTTCCGAGCATTCACAGGAACCTGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACTTGCCTATGCTCGACTGGAGCTCTGATAACTGCTTCTGGAAATCCGATTTCTGAACCAAAAGCAATTGCCTTAGATGGAAATGAAAGCCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAATGCCCCAATTGTTATG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247521" ref_strand="+" ref_description="SGN-E247521 [cLEF-42-A6]">
      <seq>cacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64358" stop="60154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64058" g_stop="63986" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62829" g_stop="62726" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="177" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="343" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="436" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60472" g_stop="60454" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="455" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E247521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64058" e_stop="63986"/>
          <exon e_start="62829" e_stop="62726"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATG</genome_strand>
        <mrna_strand>CACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396198" ref_strand="+" ref_description="SGN-E396198 [TUS-24-L22]">
      <seq>cccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagtagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaatacttttatgagttcactgagtgccccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64360" stop="60467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64060" g_stop="63986" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62111" i_length="1875">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="241" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60853" g_stop="60767" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="328" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E396198" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64060" e_stop="63986"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATT</genome_strand>
        <mrna_strand>CCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAATACTTTTATGAGTTCACTGAGTGCCCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297206" ref_strand="+" ref_description="SGN-E297206 [cLET-29-H2]">
      <seq>aaaaaagagagagagatggcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcataagatgagagttgtacttctgcatcttccgagcatttacgggaacatgttgaggaaaagagatctcaaacatcactctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64382" stop="60496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64082" g_stop="63986" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62829" g_stop="62726" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="201" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615">
            <donor d_prob="0.441" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="367" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60796" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="425" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E297206" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64082" e_stop="63986"/>
          <exon e_start="62829" e_stop="62726"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGA</genome_strand>
        <mrna_strand>AAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCATAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTTGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCACTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203210" ref_strand="+" ref_description="SGN-E203210 [cLEB-3-N2](-)">
      <seq>tatcgtattacggcaacagctgctacgccagaccaagctgctcttatcctgagtgtacctcgccgaagacctggtgatgagactcaagaaactctgcgaacatctcagtttcccagcacacatgttaaggaaaaatggggaaagaatctgtatctttcttgtctatgctatggacgcactgtatcttaaaacaaatcgtgaccaaattgttgtaacccgacatttggatcttatatcttgttgtttcattgtccaagtgtaaatggatggtggtggtggtaagaagttagatgtgtcttagaatgttatgctataggagaacttttagtttgtcttaaaattatgaaaatgttgtagctgctctgtgtaacagctttctgcttatgatgttgttgttatcctactagtacaggaacaattgttcttgctgcaataattgtttcgtgtactcaaatttctggggaaagttttaatgttatctttacctatcgattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="66188" stop="64900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65888" g_stop="65760" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65759" i_stop="65566" i_length="194">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65565" g_stop="65201" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="494" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="511"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E203210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65888" e_stop="65760"/>
          <exon e_start="65565" e_stop="65201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAGGTAGTGTTTGTGAAATTGTTCTCTACTTTGCCTAATTGTTGTGTTGGCTATTGCATAGGAGCGAGGGTTCTATCCTGTGTGCACCCTAAGGGTAGCGACTAAGGGTTTCCCTCGACAAATACACTCTATTCACATCATTTTTTATTATATGAGCGAGTTGTTGACTTGTGTTCTATCCTTGATTCTTTGTGCAGGAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAAATTTCTGGGGAAAGTTTTAATGTTATCTTTACCTATCGATT</genome_strand>
        <mrna_strand>TATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAG..................................................................................................................................................................................................GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAAATTTCTGGGGAAAGTTTTAATGTTATCTTTACCTATCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552938" ref_strand="+" ref_description="SGN-E552938 [cTSB-5-I14]">
      <seq>gtgacctccatggcaactgctaacactaggtgggctgttgttatgtcacgcaattcaggcttcagtgatcaggtggtagagcttgatttcctttatcctagtgagggtattcataagaggtgggataatggttatcgtattacggcaacagctgctacgccagaccaagctgctcttatcctgagtgtacctcgccgaagacctggtgatgagactcaagaaactctgcgaacatctcagtttcccagcacacattttaaggaaaaatggggaaagaatctgtatctttcttgtctatgctatggacgcactgtatcttaaaacaaatcgtgaccaaattgttgtaacccgacatttggatcttatatcttgttgtttcattgtccaagtgtaaatggatggtggtggtggtaagaagttagatgtgtcttagaatgttatgctataggagaacttttagtttgtcttaaaattatgaaaatgttgtagctgctctgtgtaacagctttctgcttatgatgttgttgttatcctactagtacaggaacaattgttcttgctgcaataattgtttcgtgtactcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="66868" stop="64941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66568" g_stop="66497" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66496" i_stop="65949" i_length="548">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65948" g_stop="65760" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="261" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65759" i_stop="65566" i_length="194">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65565" g_stop="65242" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="585" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="596"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E552938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66568" e_stop="66497"/>
          <exon e_start="65948" e_stop="65760"/>
          <exon e_start="65565" e_stop="65242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAGGTTGTTTGTCTCCCCTCTTTAACACTCTCATACAATATTTAATCTGGTGTTAGTGTTAATACGGTATCTCATTTCCTTCTGCCCCCTCCTCCCTTTGTGGTGATAACCTGGAAAAATTATCGGATAAATTTCCCCATGAAGCGTAGGCTTAAGGATCTAAAAGGGTAGTCACAGTAAGATTTTGTCTGCGAGGAAATGAAGTTGGTTGGTTTAATGACCTTCTGTCCTAAAATTTACTTAATAAGTCCATACCTCGTTTTGTTACACTTGATTTATAATTTCTTTTTTCTTACTAAAAGAAAGTCCATTACTCTTTATTTTTCTTGAAATCATGTAGTTTGTTTATGTTACGGCCCTACCTGAACAGCATCTGTTCTATTGGCTTGTAATACGATATCCTTGAGTTCTGAGGAAACATGAAAGTAGGATACCAAGTCTAGTTGATGAAGCATGGTCATGTGACTAGAGCGTGATTCACAGCCTCCTAGTTGTGTGGGGCAGTAGTTTCTGTCTCATCTGCTAACATGGAGATTTTTAATGTTTTATAGGTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAGGTAGTGTTTGTGAAATTGTTCTCTACTTTGCCTAATTGTTGTGTTGGCTATTGCATAGGAGCGAGGGTTCTATCCTGTGTGCACCCTAAGGGTAGCGACTAAGGGTTTCCCTCGACAAATACACTCTATTCACATCATTTTTTATTATATGAGCGAGTTGTTGACTTGTGTTCTATCCTTGATTCTTTGTGCAGGAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAA</genome_strand>
        <mrna_strand>GTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATTTTAAG..................................................................................................................................................................................................GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556294" ref_strand="+" ref_description="SGN-E556294 [cTSD-3-A18]">
      <seq>gtgacctccatggcaactgctaacactaggtgggctgttgttatgtcacgcaattcaggcttcagtgatcaggtggtagagcttgatttcctttatcctagtgagggtattcataagaggtgggataatggttatcgtattacggcaacagctgctacgccagaccaagctgctcttatcctgagtgtacctcgccgaagacctggtgatgagactcaagaaactctgcgaacatctcagtttcccagcacacattttaaggaaaaatggggaaagaatctgtatctttcttgtctatgctatggacgcactgtatcttaaaacaaatcgtgaccaaattgttgtaacccgacatttggatcttatatcttgttgtttcattgtccaagtgtaaatggatggtggtggtggtaagaagttagatgtgtcttagaatgttatgctataggagaacttttagtttgtcttaaaattatgaaaatgttgtagctgctctgtgtaacagctttctgcttatgatgttgttgttatcctactagtacaggaacaattgttcttgctgcaataattgtttcgtgtactcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="66868" stop="64941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66568" g_stop="66497" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66496" i_stop="65949" i_length="548">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65948" g_stop="65760" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="261" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65759" i_stop="65566" i_length="194">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65565" g_stop="65242" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="585" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="597"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E556294" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66568" e_stop="66497"/>
          <exon e_start="65948" e_stop="65760"/>
          <exon e_start="65565" e_stop="65242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAGGTTGTTTGTCTCCCCTCTTTAACACTCTCATACAATATTTAATCTGGTGTTAGTGTTAATACGGTATCTCATTTCCTTCTGCCCCCTCCTCCCTTTGTGGTGATAACCTGGAAAAATTATCGGATAAATTTCCCCATGAAGCGTAGGCTTAAGGATCTAAAAGGGTAGTCACAGTAAGATTTTGTCTGCGAGGAAATGAAGTTGGTTGGTTTAATGACCTTCTGTCCTAAAATTTACTTAATAAGTCCATACCTCGTTTTGTTACACTTGATTTATAATTTCTTTTTTCTTACTAAAAGAAAGTCCATTACTCTTTATTTTTCTTGAAATCATGTAGTTTGTTTATGTTACGGCCCTACCTGAACAGCATCTGTTCTATTGGCTTGTAATACGATATCCTTGAGTTCTGAGGAAACATGAAAGTAGGATACCAAGTCTAGTTGATGAAGCATGGTCATGTGACTAGAGCGTGATTCACAGCCTCCTAGTTGTGTGGGGCAGTAGTTTCTGTCTCATCTGCTAACATGGAGATTTTTAATGTTTTATAGGTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAGGTAGTGTTTGTGAAATTGTTCTCTACTTTGCCTAATTGTTGTGTTGGCTATTGCATAGGAGCGAGGGTTCTATCCTGTGTGCACCCTAAGGGTAGCGACTAAGGGTTTCCCTCGACAAATACACTCTATTCACATCATTTTTTATTATATGAGCGAGTTGTTGACTTGTGTTCTATCCTTGATTCTTTGTGCAGGAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAA</genome_strand>
        <mrna_strand>GTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATTTTAAG..................................................................................................................................................................................................GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E583016" ref_strand="+" ref_description="SGN-E583016 [8649]">
      <seq>gtgacctccatggcaacggctaacactaggtgggctgttgtgatgtcacgcaattcaggcttcagtgaccaggtggtagagcttgatttcctttatcctagtgagggtattcataagcggtgggataatggttatcgtattacggcaacagctgctacaccagaccaagctgctcttatcctgagtgtacctcgccgaagacctggtgatgagactcaagaaactctgcgaacatctcagtttcccagcacacatgtcaaggaaaaatggggaaagaatctgtatctttcttgtctatgctatggacgcactgtatcttaaaacaaatcgcgaccaaattgttgtaacctgacattttgatcttatattacgaacttctcgtcgtcctggtttcattgtccaagtgtaaatggatggtggtaaagttagctgtgtcgtanaatgttatgcataggaaaactttagttgtcttaaaattatgaatgttgtagctgctgtgtaacagctttctgcttatgatgttgttgttatcctactagtactgaaacaattgttcttgctggcaaaaatttgtcttcgtggtactcgaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="66868" stop="64939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66568" g_stop="66497" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66496" i_stop="65949" i_length="548">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65948" g_stop="65760" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="261" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65759" i_stop="65566" i_length="194">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65565" g_stop="65266" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="561" r_length="300" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E583016" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66568" e_stop="66497"/>
          <exon e_start="65948" e_stop="65760"/>
          <exon e_start="65565" e_stop="65266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAGGTTGTTTGTCTCCCCTCTTTAACACTCTCATACAATATTTAATCTGGTGTTAGTGTTAATACGGTATCTCATTTCCTTCTGCCCCCTCCTCCCTTTGTGGTGATAACCTGGAAAAATTATCGGATAAATTTCCCCATGAAGCGTAGGCTTAAGGATCTAAAAGGGTAGTCACAGTAAGATTTTGTCTGCGAGGAAATGAAGTTGGTTGGTTTAATGACCTTCTGTCCTAAAATTTACTTAATAAGTCCATACCTCGTTTTGTTACACTTGATTTATAATTTCTTTTTTCTTACTAAAAGAAAGTCCATTACTCTTTATTTTTCTTGAAATCATGTAGTTTGTTTATGTTACGGCCCTACCTGAACAGCATCTGTTCTATTGGCTTGTAATACGATATCCTTGAGTTCTGAGGAAACATGAAAGTAGGATACCAAGTCTAGTTGATGAAGCATGGTCATGTGACTAGAGCGTGATTCACAGCCTCCTAGTTGTGTGGGGCAGTAGTTTCTGTCTCATCTGCTAACATGGAGATTTTTAATGTTTTATAGGTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAGGTAGTGTTTGTGAAATTGTTCTCTACTTTGCCTAATTGTTGTGTTGGCTATTGCATAGGAGCGAGGGTTCTATCCTGTGTGCACCCTAAGGGTAGCGACTAAGGGTTTCCCTCGACAAATACACTCTATTCACATCATTTTTTATTATATGAGCGAGTTGTTGACTTGTGTTCTATCCTTGATTCTTTGTGCAGGAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTT-TCATTGTCCAAGTGTAAATG--GATG-GT-GGTGG-TGGT-AAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCT</genome_strand>
        <mrna_strand>GTGACCTCCATGGCAACGGCTAACACTAGGTGGGCTGTTGTGATGTCACGCAATTCAGGCTTCAGTGACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGCGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACACCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTCAAG..................................................................................................................................................................................................GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGCGACCAAATTGTTGTAACCTGACATTTTGATCTTATATTACGAACTTCTCGTCGTCCTGGTTTCATTGTCCAAGTGTAAATGGATGGTGGTAAAGTTAGCTGTGTCGTANAATGTTATGC-ATAGGAAAAC-TTTAG-TTGTCTTAAAATTATG--AATGTTGTAGCTG--CTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACTGAAACAATTGTTCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477097" ref_strand="+" ref_description="SGN-E477097 [cSTB-47-O21]">
      <seq>ctaacactaggtgggctgttgttatgtcacgcaattcaggcttcagtgaccaggtggtagagctcgatttcctttatcctagtgagggtattcataagcggtgggataatggttatcgtattacggcaacagctgctacaccagaccaagctgctcttatcctgagtgtacctcgccgaagacctggtgatgagactcaagaaactctgcgaacatctcagtttcccagcacacatgtcaaggaaaaatggggaaagaatctgtatctttcttgtctatgctatggacgcactgtatcttaaaacaaatcgcgaccaaattgttgtaacctgtcattttgatcttatattacgaacttctcgtcatctttgtttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="66849" stop="65159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66549" g_stop="66497" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66496" i_stop="65949" i_length="548">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65948" g_stop="65760" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="242" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65759" i_stop="65566" i_length="194">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65565" g_stop="65461" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="347" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E477097" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66549" e_stop="66497"/>
          <exon e_start="65948" e_stop="65760"/>
          <exon e_start="65565" e_stop="65461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAGGTTGTTTGTCTCCCCTCTTTAACACTCTCATACAATATTTAATCTGGTGTTAGTGTTAATACGGTATCTCATTTCCTTCTGCCCCCTCCTCCCTTTGTGGTGATAACCTGGAAAAATTATCGGATAAATTTCCCCATGAAGCGTAGGCTTAAGGATCTAAAAGGGTAGTCACAGTAAGATTTTGTCTGCGAGGAAATGAAGTTGGTTGGTTTAATGACCTTCTGTCCTAAAATTTACTTAATAAGTCCATACCTCGTTTTGTTACACTTGATTTATAATTTCTTTTTTCTTACTAAAAGAAAGTCCATTACTCTTTATTTTTCTTGAAATCATGTAGTTTGTTTATGTTACGGCCCTACCTGAACAGCATCTGTTCTATTGGCTTGTAATACGATATCCTTGAGTTCTGAGGAAACATGAAAGTAGGATACCAAGTCTAGTTGATGAAGCATGGTCATGTGACTAGAGCGTGATTCACAGCCTCCTAGTTGTGTGGGGCAGTAGTTTCTGTCTCATCTGCTAACATGGAGATTTTTAATGTTTTATAGGTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAGGTAGTGTTTGTGAAATTGTTCTCTACTTTGCCTAATTGTTGTGTTGGCTATTGCATAGGAGCGAGGGTTCTATCCTGTGTGCACCCTAAGGGTAGCGACTAAGGGTTTCCCTCGACAAATACACTCTATTCACATCATTTTTTATTATATGAGCGAGTTGTTGACTTGTGTTCTATCCTTGATTCTTTGTGCAGGAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTAT</genome_strand>
        <mrna_strand>CTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGAGCTCGATTTCCTTTATCCTAGTGAGGGTATTCATAAGCGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACACCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTCAAG..................................................................................................................................................................................................GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGCGACCAAATTGTTGTAACCTGTCATTTTGATCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321070" ref_strand="+" ref_description="SGN-E321070 [cTOB-13-E1]">
      <seq>tcaaaaggctattcaagttggccaaaagcgggggagactaactttaaatgaggaagaagagcagcctcagaagaaaattcgaatcggtgttcctgcgacgcaatggatttcaatatataatgccagaaagccgatgaaacagaggtaccattacaatgtagcagacacaagattggcacagcatgtggagaaagggtctgtggatggtttgtctataagttgtgtagcatcatgttctagcttatgggctatcatcatggatgctggaacgaacttcactagccaagtttatgagctgtcacctttcttcttacacaaggagtggattatggagcaatgggagaaaaactattatattagttctcttgctggtggcataaatggagcctctttagtagtaatgtcaaaaggcacacagttcactcaacagtcttataaagtcagtgagtcatttcccttcaagtggataagcaagaaatggaaagaagggttccatgtgacctccatggcaactgctaacactaggtgggctgttgttatgtcacgcaattcaggcttcagtgatcaggtggtagagcttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="68982" stop="65631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68763" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68762" i_stop="68679" i_length="84">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68678" g_stop="68542" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="144" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68541" i_stop="67900" i_length="642">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="67725" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="319" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67724" i_stop="67637" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67636" g_stop="67546" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="410" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67545" i_stop="66655" i_length="891">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66654" g_stop="66497" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="568" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66496" i_stop="65949" i_length="548">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65948" g_stop="65931" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="586" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E321070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68763"/>
          <exon e_start="68678" e_stop="68542"/>
          <exon e_start="67899" e_stop="67725"/>
          <exon e_start="67636" e_stop="67546"/>
          <exon e_start="66654" e_stop="66497"/>
          <exon e_start="65948" e_stop="65931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGTAAGTATTCTAAATTTTATACGAGTCAACAGTAGGTAAGCTTTATTACACTACTATATGGGGCTTATGGTGTAATCATTATAGGCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAGGTACATATATCATGTCACGTGATTTGTCTTTTATGGCAGTTAATAAGTATTTGTCTGTGGTGAACATTAGCTCTGGATTCTTCACCTTAAATGGGGATGTGGTTTGTTGGTTTGGGGGGGGGGGGGGTAATAACACAAGTGGGGTTTGGAGAGGTAAGATATATGCAGAATGGTACTCCTGGAAGTTTTCAACTTCTTGGATTTTGGGAGCAGGTAAAATTAAGCTTCTGCTGGTAATATATTTTGAACTTTTTGGAGGCTGTATATGGTAGTCAGAGAAACAAATATCTGCCAAATTTGGTATATTAGTCAATACTCATTTACTTATTTTATTAAGAAGAATACATGGAGTGTCCTTTGTCTTCTGATGGCATAATCACTAAAGATTTTTCTGGAAGATCTGTTTTATCTTCATCTATGCTCCACAGTATTAGGAGATGATCCTTTTCTATTCGCTCCATAGTGTTGATTGGATAGGTATAGAGGATTGGTTGGCTTTTGTAGAGACCTTGTTCTGCTGTGAGATACAGCCACTTTTTACGCCTAATTATTATGAATATTATTACTTGATAGTTGATACAAAAGAAAAAATCATCTAATGTACCCCAACTTTCCCTAATATTAACATCATGACTTCATTAGGTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAGGTAATTAGAAGTTCCATGTAGTCTTCATGTGGTGTGCAGCTTTTTAGCTTCAGATGTGTTTATCTAATCTTCCAAATGTGTGTTACAGGAGTGGATTATGGAGCAATGGGAGAAAAACTATTATATTAGTTCTCTTGCTGGTGGCATAAATGGAGCCTCTTTAGTAGTAATGTCAAAAGGTGGGTTTCTTTTAACATGCTGTAGGTTAATTCTTTCTACTTGTTTTAATCTTTTACCCACTTTTAGAGAATACAGTTAGATATCTTTTCTTGCTTATCAGTCAGCAAAAGTTACAATTAACTAGCATGTTATGCTTGGTGCATATGGTTTAGTAGGTCACGACATAATTTTGATTGGGCTATTTGTATTACTGCAAGATATGCTTTCTGTTGGTTTCTTTTTTTGTTGGTCCCTCTGAACTTCATCTTGCATTGAAAACAAGCTCTACTGCTGGATCTGTATTTTCCTTCTTCGATTTTATGCATCCAACTATAACATGTATCTCTCTCTCTCTCGTGTTGTAAAATGGCAAGTTTTTATTATTACTCATAAACAGCCCTAAGAATGTGCTGGATTTATATACATTGTGCCAAAAGTGCGAAGACAAAAGTATAGCCCTATCTAAATGTATAATATATGGATTATTGGAGCTCTTAAGCTGTAGTTGCTAGGGTAGTTGTCTCCTGATGTCGTTCTGTGATGATAGTTTCTTATATTTGTAAGGCGAATCAGAAGGTGTTAGCTTTTTATCAGTTTTTATGATGTACGAGTCTAAAAATTGTTCAGTCAGATGGTGTTATATGATGATGGGTTACCTCTTCAGATATTTTTTTGGAGCTGGTAAATGTTGGGTTACGTCTTGTATATGCCAGTTTAACACTAGTTGGTGATATATGGAATAGAAGTTTGATATTTGAGTTGCATTTCGTCATCTAATTGTTGTGGAGGGTATTTTTTCCTATGCAAAGGCAAATGCAGATTGTTTTGCCAGCTTTGAGCTTTTCTGGATGCAGATCTAGTTCCTGGACTATCTTTATTTTTGTATATAATACTTGTGTCATTTTTTGCAGGCACACAGTTCACTCAACAGTCTTATAAAGTCAGTGAGTCATTTCCCTTCAAGTGGATAAGCAAGAAATGGAAAGAAGGGTTCCATGTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAGGTTGTTTGTCTCCCCTCTTTAACACTCTCATACAATATTTAATCTGGTGTTAGTGTTAATACGGTATCTCATTTCCTTCTGCCCCCTCCTCCCTTTGTGGTGATAACCTGGAAAAATTATCGGATAAATTTCCCCATGAAGCGTAGGCTTAAGGATCTAAAAGGGTAGTCACAGTAAGATTTTGTCTGCGAGGAAATGAAGTTGGTTGGTTTAATGACCTTCTGTCCTAAAATTTACTTAATAAGTCCATACCTCGTTTTGTTACACTTGATTTATAATTTCTTTTTTCTTACTAAAAGAAAGTCCATTACTCTTTATTTTTCTTGAAATCATGTAGTTTGTTTATGTTACGGCCCTACCTGAACAGCATCTGTTCTATTGGCTTGTAATACGATATCCTTGAGTTCTGAGGAAACATGAAAGTAGGATACCAAGTCTAGTTGATGAAGCATGGTCATGTGACTAGAGCGTGATTCACAGCCTCCTAGTTGTGTGGGGCAGTAGTTTCTGTCTCATCTGCTAACATGGAGATTTTTAATGTTTTATAGGTGGTAGAGCTTGATTTC</genome_strand>
        <mrna_strand>TCAAAAG....................................................................................GCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAG........................................................................................GAGTGGATTATGGAGCAATGGGAGAAAAACTATTATATTAGTTCTCTTGCTGGTGGCATAAATGGAGCCTCTTTAGTAGTAATGTCAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACAGTTCACTCAACAGTCTTATAAAGTCAGTGAGTCATTTCCCTTCAAGTGGATAAGCAAGAAATGGAAAGAAGGGTTCCATGTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGAGCTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699816" ref_strand="+" ref_description="SGN-E699816 [FA11BB10]">
      <seq>agcgtcctgacacgttcagagggactgttcgctatgcaagtgcacatgctcacttgggaaggactgccagtagaagagatgatttggaatcacttgcatatacactaatttttcttcatcgaggcaggctcccatggcagggctatcagggtgataacaaatcatttttagtctgtaaaaaaaagatggcaacatctccagagatgctttgttgcttctgccctgcaccttttagagaatttcttgatacagtaattaacatgaagtttgatgaagaaccgaaatattcaaagttaatctctttatttgggagcttgcttggagctgatcctgctataaggccgatcaacacagatggtgctcaaaaggctattcaagttggccaaaagcgggggagactaactttaaatgaggaagaagagcagcctcagaagaaaattcgaatcggtgttcctgcgacgcaatggatttcaatatataatgccagaaagccgatgaaacagaggtaccattacaatgtagcagacacaagattggcacagcatgtggagaaagggtctgtggatggtttgtctataagttgtgtagcatcatgttctagcttatgggctatcatcatggatgctggaacgaacttcactagccaagtttatgagctgtcacctttcttcttacacaaggagtggattatggagcaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="69533" stop="67315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69313" g_stop="69295" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69294" i_stop="69219" i_length="76">
            <donor d_prob="0.895" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69218" g_stop="69089" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="149" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69088" i_stop="68982" i_length="107">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68981" g_stop="68763" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="368" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68762" i_stop="68679" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68678" g_stop="68542" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="505" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68541" i_stop="67900" i_length="642">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67899" g_stop="67725" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="680" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67724" i_stop="67637" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67636" g_stop="67615" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="702" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E699816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69313" e_stop="69295"/>
          <exon e_start="69218" e_stop="69089"/>
          <exon e_start="68981" e_stop="68763"/>
          <exon e_start="68678" e_stop="68542"/>
          <exon e_start="67899" e_stop="67725"/>
          <exon e_start="67636" e_stop="67615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTCCTGACACGTTCAGGTGTGGTGATGTTCTGCTATCCTTTGCTTAGTTTTCTTATATCTACCCAATACTAACTTCTGTCTATCAATTTCAGAGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAGGTTTCTGCTTTACCTGCTTCTTTCCAGTCTTTACACTGCATACACTTTGTTTCAGTCATTGAACAACCCCCACGTCTCTTGTTACAATTTATATTTCTGGATTGCAGGGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGCTATAAGGCCGATCAACACAGATGGTGCTCAAAAGGTAAGTATTCTAAATTTTATACGAGTCAACAGTAGGTAAGCTTTATTACACTACTATATGGGGCTTATGGTGTAATCATTATAGGCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAGGTACATATATCATGTCACGTGATTTGTCTTTTATGGCAGTTAATAAGTATTTGTCTGTGGTGAACATTAGCTCTGGATTCTTCACCTTAAATGGGGATGTGGTTTGTTGGTTTGGGGGGGGGGGGGGTAATAACACAAGTGGGGTTTGGAGAGGTAAGATATATGCAGAATGGTACTCCTGGAAGTTTTCAACTTCTTGGATTTTGGGAGCAGGTAAAATTAAGCTTCTGCTGGTAATATATTTTGAACTTTTTGGAGGCTGTATATGGTAGTCAGAGAAACAAATATCTGCCAAATTTGGTATATTAGTCAATACTCATTTACTTATTTTATTAAGAAGAATACATGGAGTGTCCTTTGTCTTCTGATGGCATAATCACTAAAGATTTTTCTGGAAGATCTGTTTTATCTTCATCTATGCTCCACAGTATTAGGAGATGATCCTTTTCTATTCGCTCCATAGTGTTGATTGGATAGGTATAGAGGATTGGTTGGCTTTTGTAGAGACCTTGTTCTGCTGTGAGATACAGCCACTTTTTACGCCTAATTATTATGAATATTATTACTTGATAGTTGATACAAAAGAAAAAATCATCTAATGTACCCCAACTTTCCCTAATATTAACATCATGACTTCATTAGGTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAGGTAATTAGAAGTTCCATGTAGTCTTCATGTGGTGTGCAGCTTTTTAGCTTCAGATGTGTTTATCTAATCTTCCAAATGTGTGTTACAGGAGTGGATTATGGAGCAATGGG</genome_strand>
        <mrna_strand>AGCGTCCTGACACGTTCAG............................................................................AGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAG...........................................................................................................GGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGCTATAAGGCCGATCAACACAGATGGTGCTCAAAAG....................................................................................GCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAG........................................................................................GAGTGGATTATGGAGCAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453787" ref_strand="+" ref_description="SGN-E453787 [cSTS-21-K7]">
      <seq>tgcggagatgtaaagccagaaaactttttacttggccagccatcaacaccacaagagaagaagttgttcctaagttgacttgggactggccacaaagtggaaagacacttcaaaagggcagcatgtcggatatgatcagcgtcctgacacgttcagagggaccgttcgctatgcaagtgcacatgctcacttgggaaggactgccagtagaagagatgatttggaatcacttgcatacacactaatttttcttcatcgagggaggctcccatggcaaggctatcagggtgataacaaatcatttttagtctgcaaaaaaaagatggcaacatctccagagatgctttgttgcttctgccctgcaccttttagagaatttcttgatacagtaattaacatgaaatttgatgaagagccaaaatattcaaagttaatctccctatttgggagcttgcttggagctgatcctgctataaggccgatcaacacagatggtgctcaaaaggctattcaagttggccaaaagcgggggagactaactttaaatgaggaagaagagcagcctcagaagaaaattcgaatcggtgttcctgcgacgcaatggatttcaatatataatgccagaaagccgatgaaacagaggtaccattacaatgtagcagacacaagattggcacagcatgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="69823" stop="67556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69526" g_stop="69439" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69438" i_stop="69362" i_length="77">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69361" g_stop="69295" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="156" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69294" i_stop="69219" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69218" g_stop="69089" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="286" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69088" i_stop="68982" i_length="107">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68981" g_stop="68763" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="505" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68762" i_stop="68679" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68678" g_stop="68542" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="642" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68541" i_stop="67900" i_length="642">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67899" g_stop="67856" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="686" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E453787" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69526" e_stop="69439"/>
          <exon e_start="69361" e_stop="69295"/>
          <exon e_start="69218" e_stop="69089"/>
          <exon e_start="68981" e_stop="68763"/>
          <exon e_start="68678" e_stop="68542"/>
          <exon e_start="67899" e_stop="67856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCT-AGTTGACTTGGGACTGGGTAAGAGAGCTTAGTGTAGGTTTCTGTGTTTGTTAATTTGATAACCCTTTTCCTAATTATTTATCTACCAATTACAGCCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAGGTGTGGTGATGTTCTGCTATCCTTTGCTTAGTTTTCTTATATCTACCCAATACTAACTTCTGTCTATCAATTTCAGAGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAGGTTTCTGCTTTACCTGCTTCTTTCCAGTCTTTACACTGCATACACTTTGTTTCAGTCATTGAACAACCCCCACGTCTCTTGTTACAATTTATATTTCTGGATTGCAGGGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGCTATAAGGCCGATCAACACAGATGGTGCTCAAAAGGTAAGTATTCTAAATTTTATACGAGTCAACAGTAGGTAAGCTTTATTACACTACTATATGGGGCTTATGGTGTAATCATTATAGGCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAGGTACATATATCATGTCACGTGATTTGTCTTTTATGGCAGTTAATAAGTATTTGTCTGTGGTGAACATTAGCTCTGGATTCTTCACCTTAAATGGGGATGTGGTTTGTTGGTTTGGGGGGGGGGGGGGTAATAACACAAGTGGGGTTTGGAGAGGTAAGATATATGCAGAATGGTACTCCTGGAAGTTTTCAACTTCTTGGATTTTGGGAGCAGGTAAAATTAAGCTTCTGCTGGTAATATATTTTGAACTTTTTGGAGGCTGTATATGGTAGTCAGAGAAACAAATATCTGCCAAATTTGGTATATTAGTCAATACTCATTTACTTATTTTATTAAGAAGAATACATGGAGTGTCCTTTGTCTTCTGATGGCATAATCACTAAAGATTTTTCTGGAAGATCTGTTTTATCTTCATCTATGCTCCACAGTATTAGGAGATGATCCTTTTCTATTCGCTCCATAGTGTTGATTGGATAGGTATAGAGGATTGGTTGGCTTTTGTAGAGACCTTGTTCTGCTGTGAGATACAGCCACTTTTTACGCCTAATTATTATGAATATTATTACTTGATAGTTGATACAAAAGAAAAAATCATCTAATGTACCCCAACTTTCCCTAATATTAACATCATGACTTCATTAGGTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGG</genome_strand>
        <mrna_strand>TGCGGAGATGTAAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAAGTTGACTTGGGACTGG.............................................................................CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAG............................................................................AGGGACCGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATACACACTAATTTTTCTTCATCGAGGGAGGCTCCCATGGCAAGGCTATCAG...........................................................................................................GGTGATAACAAATCATTTTTAGTCTGCAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAATTTGATGAAGAGCCAAAATATTCAAAGTTAATCTCCCTATTTGGGAGCTTGCTTGGAGCTGATCCTGCTATAAGGCCGATCAACACAGATGGTGCTCAAAAG....................................................................................GCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334474" ref_strand="+" ref_description="SGN-E334474 [cTOD-23-G12]">
      <seq>cactgaagtttgagcatcgaaacagcaaaggctgtagctatggccctccatatgagtggcaggtttacaatactcttggaggcagccatggagtgcctagagtgcattataaaggacgggcaggagagtattatgtgatggttatggacatgctaggccctagcttatgggatgtatggaattcctctgggcaatcaatgtcagcagaaatggtggcttgtattgcagttgagtcattgtcgattttggaaaagctgcatgcgaaaggttatgttcatggagatgtgaagccagaaaactttttacttggccagccatcaacaccacaagagaagaagttgttcctagttgacttgggactggccacaaagtggaaagacacttcaaaagggcagcatgtcggatatgatcagcgtcctgacacgttcagagggactgttcgctatgcaagtgcacatgctcacttgggaaggactgccagtagaagagatgatttggaatcacttgcatatacactaatttttcttcatcgaggcaggctcccatggcaggnctatcagggtgataacaaatcatttttagtctgtaaaaaaagatggcaacatctccagagatgctttgttgcttctgccctgcaccttttagagatttcttgatacagtaattaacatgagtttgatgaagaaccgaaatattcaaagttaatctctttatttgggagcttgcttggagctgatcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="71788" stop="68497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71488" g_stop="71419" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71418" i_stop="71330" i_length="89">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71329" g_stop="71260" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="140" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71259" i_stop="70234" i_length="1026">
            <donor d_prob="0.511" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70233" g_stop="70178" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="196" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70177" i_stop="69734" i_length="444">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69733" g_stop="69662" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="268" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69661" i_stop="69534" i_length="128">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69533" g_stop="69439" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="363" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69438" i_stop="69362" i_length="77">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69361" g_stop="69295" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="430" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69294" i_stop="69219" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69218" g_stop="69089" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="560" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69088" i_stop="68982" i_length="107">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68981" g_stop="68797" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="742" r_length="182" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E334474" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71488" e_stop="71419"/>
          <exon e_start="71329" e_stop="71260"/>
          <exon e_start="70233" e_stop="70178"/>
          <exon e_start="69733" e_stop="69662"/>
          <exon e_start="69533" e_stop="69439"/>
          <exon e_start="69361" e_stop="69295"/>
          <exon e_start="69218" e_stop="69089"/>
          <exon e_start="68981" e_stop="68797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAAGTAAGGATTGATATCTTTTAAAGTTACTGTGTACACTTGTACTGAAATGAGATTTGCAGGACTGAAAGTTCCTTTTTTTTTTGGTTCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATGGTATGTTCACCAAGACAGATTTGCATTGATTATAGTAATGGAGGATAAAAAAATTGAGTTGTGGATATTTATTTTTGGGAGAAACATCAAGATAATGAGTTGAGACAGTGAATGTGACCTCTTTTAGCATTCTAATTTCAGCATCCAAAGAGAATTAAATAAAATATATTTAATAGGCAGGCAGCGTGATATATTTCAAGGTTTTAAGAGGGTCTCATATCTGCTCTTACCAAGCTAACAAATAGCTTTAGTGTACAATGGAGGTCTTTATTTTTTATTCACTTATTTAGCCAGGTCCTGTTCTAATTGAATGAGTGGAACTCTTTTGGTAGTTGCTTACTTTCTTTTTGGTATGATTGTCTTTTGAGGGGACTGATTTTGTTTTGCTATTACACTTCCCCTGGATCTCAGAAGTCGTCTTTGATATTAGCTGCCGGGCTTTGGTCTAGTGTTAAGAACGTTACTTGTGATGTGTGGGTTAGGAACACGTCACATGTTCAAACCTTGCTGCAAATGAAAGCCTAGTACTCCTATTTAAGTGGAGAACATTGGAGGGGTGAGCCATCATCCACAGAGTGTGAAACCATGTACCACTGGTCCTGGTGGATTTCTCGACTACAAAAAAAGTGACCATTTTACTTCAAATTGTTAGTCCACTCGTCTTACAAAAATTGTCACTCTTTCCTGTTCAATTTAAGAAAAAAAGGGACCTTTGTCAAGCATATTCTCCTAATTGTTTAGTAAAGAGTCTGCTAGAATCATGTCCGTTTTCTTGCTGTTGAAGATTGATTGATAGAATAAAGATATAATTTTTTGAAATGGGATAAAATTTTGGGACATACACAGAAAGTTAAGGAGAGATAAATATTTCTGATCCGATGAGTTACCAGCAAAGTGGTTGTTAATGATTAGGACCTCTTTTCAATGAACGGATTCTGCTCTGTATGTTTTCTGGACTAGTGAATGCTGTTGTATATAATAATAAAATGTGTGTGCGTATTGACCTTATTATTATCATGTATGCAGGTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATCGTAAGTAGCTAATGCTAGTATTAAACATACTTACTGAACAAAGACTTCTTCAATTGTCAGACCTCCAGAAGTGGCTGCTTTTTCCCCACTCTTTCAGTTATTTTTGATTATTATGATAAATTGATAATAGAAATACCGTCGTTCAATAAGTCAACCTGCTCAAGGATGGCATTCTCAAATTGAAAAATGGTCTAAAATAAGTCACCAATTATTTGACATGAACTATGTAGTAATTCTAATTTCAAAGTTAAATGGTCCTTGATATCCATCCTTAAACACTGGTGATAAGGATCTGCTCGCAATTGTGTATAGTGTAGATTCTGATTTTCTGGGGTTTATTTCTAAGAACAGCAAAAACATCGTTGATAAACTTATTGAGTTTTGGTTTACCATATATCAATGTGTCAGTTGAATATGGTCTGCTCATAAATCCTACTTATGCAGAATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGGGTACGGATTCACTCTTTTCCTGCAATCAGTTTGGTTCTTTTTATTTGCTGAATGTTGAACTACTTTTAATTTGTAGTCATTGTACTTCTCTTTTGAATTCTTCGTAGTGACTTTTTTGTTGATCTCAGTTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGGGTAAGAGAGCTTAGTGTAGGTTTCTGTGTTTGTTAATTTGATAACCCTTTTCCTAATTATTTATCTACCAATTACAGCCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAGGTGTGGTGATGTTCTGCTATCCTTTGCTTAGTTTTCTTATATCTACCCAATACTAACTTCTGTCTATCAATTTCAGAGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAGGTTTCTGCTTTACCTGCTTCTTTCCAGTCTTTACACTGCATACACTTTGTTTCAGTCATTGAACAACCCCCACGTCTCTTGTTACAATTTATATTTCTGGATTGCAGGGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGC</genome_strand>
        <mrna_strand>CACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAA.........................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGG................................................................................................................................TTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGG.............................................................................CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAG............................................................................AGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGNCTATCAG...........................................................................................................GGTGATAACAAATCATTTTTAGTCTGT-AAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAG-ATTTCTTGATACAGTAATTAACATG-AGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317366" ref_strand="+" ref_description="SGN-E317366 [cTOA-28-C20]">
      <seq>cgtgctagtggtcccttggctttggaggtcgcactgaagtttgagcatcgaaacagcaaaggctgtagctatggccctccatatgagtggcaggtttacaatactcttggaggcagccatggagtgcctagagtgcattataaaggacgggcaggagagtattatgtgatggttatggacatgctaggccctagcttatgggatgtatggaattcctctgggcaatcaatgtcagcagaaatggtggcttgtattgcagttgagtcattgtcgattttggaaaagctgcatgcgaaaggttatgttcatggagatgtgaagccagaaaactttttacttggccagccatcaacaccacaagagaagaagttgttcctagttgacttgggactggccacaaagtggaaagacacttcaaaagggcagcatgtcggatatgatcagcgtcctgacacgttcagagggactgttcgctatgcaagtgcacatgctcacttgggaaggactgccagtagaagagatgatttggaatcacttgcatatacactaatttttcttcatcgaggcaggctcccatggcaggnctatcanggtgataacaaatcatttttagtctgtaaaaaaagatggcaacatctccagagatgctttgttgcttctgccctgcaccttttagaagatttcttgatacagtaattaacatgaagtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="71985" stop="68558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71685" g_stop="71659" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71658" i_stop="71493" i_length="166">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71492" g_stop="71419" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="101" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71418" i_stop="71330" i_length="89">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71329" g_stop="71260" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="171" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71259" i_stop="70234" i_length="1026">
            <donor d_prob="0.511" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70233" g_stop="70178" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="227" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70177" i_stop="69734" i_length="444">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69733" g_stop="69662" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="299" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69661" i_stop="69534" i_length="128">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69533" g_stop="69439" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="394" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69438" i_stop="69362" i_length="77">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69361" g_stop="69295" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="461" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69294" i_stop="69219" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69218" g_stop="69089" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="591" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69088" i_stop="68982" i_length="107">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68981" g_stop="68858" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="714" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E317366" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71685" e_stop="71659"/>
          <exon e_start="71492" e_stop="71419"/>
          <exon e_start="71329" e_stop="71260"/>
          <exon e_start="70233" e_stop="70178"/>
          <exon e_start="69733" e_stop="69662"/>
          <exon e_start="69533" e_stop="69439"/>
          <exon e_start="69361" e_stop="69295"/>
          <exon e_start="69218" e_stop="69089"/>
          <exon e_start="68981" e_stop="68858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTAGTGGTCCCTTGGCTTTGGAGGTAAAGTGGTTGCATATGAATAATCTATCCACTTTTTCCCGTTATCCTTTTCGACAAGGCTAATTTATCTGTCTACTAATCTTAGCGTCTTCTCGATGCAATTGTTAATGAAATCTTATTTTACGTGATAAAAGAAAACCATATTGATTTTCTTTTATGTCTCTAGGTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAAGTAAGGATTGATATCTTTTAAAGTTACTGTGTACACTTGTACTGAAATGAGATTTGCAGGACTGAAAGTTCCTTTTTTTTTTGGTTCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATGGTATGTTCACCAAGACAGATTTGCATTGATTATAGTAATGGAGGATAAAAAAATTGAGTTGTGGATATTTATTTTTGGGAGAAACATCAAGATAATGAGTTGAGACAGTGAATGTGACCTCTTTTAGCATTCTAATTTCAGCATCCAAAGAGAATTAAATAAAATATATTTAATAGGCAGGCAGCGTGATATATTTCAAGGTTTTAAGAGGGTCTCATATCTGCTCTTACCAAGCTAACAAATAGCTTTAGTGTACAATGGAGGTCTTTATTTTTTATTCACTTATTTAGCCAGGTCCTGTTCTAATTGAATGAGTGGAACTCTTTTGGTAGTTGCTTACTTTCTTTTTGGTATGATTGTCTTTTGAGGGGACTGATTTTGTTTTGCTATTACACTTCCCCTGGATCTCAGAAGTCGTCTTTGATATTAGCTGCCGGGCTTTGGTCTAGTGTTAAGAACGTTACTTGTGATGTGTGGGTTAGGAACACGTCACATGTTCAAACCTTGCTGCAAATGAAAGCCTAGTACTCCTATTTAAGTGGAGAACATTGGAGGGGTGAGCCATCATCCACAGAGTGTGAAACCATGTACCACTGGTCCTGGTGGATTTCTCGACTACAAAAAAAGTGACCATTTTACTTCAAATTGTTAGTCCACTCGTCTTACAAAAATTGTCACTCTTTCCTGTTCAATTTAAGAAAAAAAGGGACCTTTGTCAAGCATATTCTCCTAATTGTTTAGTAAAGAGTCTGCTAGAATCATGTCCGTTTTCTTGCTGTTGAAGATTGATTGATAGAATAAAGATATAATTTTTTGAAATGGGATAAAATTTTGGGACATACACAGAAAGTTAAGGAGAGATAAATATTTCTGATCCGATGAGTTACCAGCAAAGTGGTTGTTAATGATTAGGACCTCTTTTCAATGAACGGATTCTGCTCTGTATGTTTTCTGGACTAGTGAATGCTGTTGTATATAATAATAAAATGTGTGTGCGTATTGACCTTATTATTATCATGTATGCAGGTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATCGTAAGTAGCTAATGCTAGTATTAAACATACTTACTGAACAAAGACTTCTTCAATTGTCAGACCTCCAGAAGTGGCTGCTTTTTCCCCACTCTTTCAGTTATTTTTGATTATTATGATAAATTGATAATAGAAATACCGTCGTTCAATAAGTCAACCTGCTCAAGGATGGCATTCTCAAATTGAAAAATGGTCTAAAATAAGTCACCAATTATTTGACATGAACTATGTAGTAATTCTAATTTCAAAGTTAAATGGTCCTTGATATCCATCCTTAAACACTGGTGATAAGGATCTGCTCGCAATTGTGTATAGTGTAGATTCTGATTTTCTGGGGTTTATTTCTAAGAACAGCAAAAACATCGTTGATAAACTTATTGAGTTTTGGTTTACCATATATCAATGTGTCAGTTGAATATGGTCTGCTCATAAATCCTACTTATGCAGAATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGGGTACGGATTCACTCTTTTCCTGCAATCAGTTTGGTTCTTTTTATTTGCTGAATGTTGAACTACTTTTAATTTGTAGTCATTGTACTTCTCTTTTGAATTCTTCGTAGTGACTTTTTTGTTGATCTCAGTTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGGGTAAGAGAGCTTAGTGTAGGTTTCTGTGTTTGTTAATTTGATAACCCTTTTCCTAATTATTTATCTACCAATTACAGCCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAGGTGTGGTGATGTTCTGCTATCCTTTGCTTAGTTTTCTTATATCTACCCAATACTAACTTCTGTCTATCAATTTCAGAGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAGGTTTCTGCTTTACCTGCTTCTTTCCAGTCTTTACACTGCATACACTTTGTTTCAGTCATTGAACAACCCCCACGTCTCTTGTTACAATTTATATTTCTGGATTGCAGGGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATG</genome_strand>
        <mrna_strand>CGTGCTAGTGGTCCCTTGGCTTTGGAG......................................................................................................................................................................GTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAA.........................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGG................................................................................................................................TTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGG.............................................................................CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAG............................................................................AGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGNCTATCAN...........................................................................................................GGTGATAACAAATCATTTTTAGTCTGT-AAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAAGATTTCTTGATACAGTAATTAACATGAAGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472186" ref_strand="+" ref_description="SGN-E472186 [cSTB-27-J2]">
      <seq>ggaattcctctgggcaatcaatgtctgcagaaatggtggcttgtattgcagttgagtcattgtcgattttggaaaagctgcatgcaaaaggttacgtgcacggagatgtaaagccagaaaactttttacttggccagccatcaacaccacaagagaagaagttgttcctagttgacttgggactggccacaaagtggaaagacacttcaaaagggcagcatgtcggatatgatcagcgtcctgacacgttcagagggaccgttcgctatgcaagtgcacatgctcacttgggaaggactgccagtagaagagatgatttggaatcacttgcatacacactaatttttcttcatcgagggaggctcccatggcaaggctatcagggtgataacaaatcatttttagtctgcaaaaaaaagatggcaacatctccagagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="70033" stop="68623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69733" g_stop="69662" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="91" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69661" i_stop="69534" i_length="128">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69533" g_stop="69439" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="186" r_length="95" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69438" i_stop="69362" i_length="77">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69361" g_stop="69295" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="253" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69294" i_stop="69219" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69218" g_stop="69089" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="383" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69088" i_stop="68982" i_length="107">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68981" g_stop="68923" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="442" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E472186" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69733" e_stop="69662"/>
          <exon e_start="69533" e_stop="69439"/>
          <exon e_start="69361" e_stop="69295"/>
          <exon e_start="69218" e_stop="69089"/>
          <exon e_start="68981" e_stop="68923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGGGTACGGATTCACTCTTTTCCTGCAATCAGTTTGGTTCTTTTTATTTGCTGAATGTTGAACTACTTTTAATTTGTAGTCATTGTACTTCTCTTTTGAATTCTTCGTAGTGACTTTTTTGTTGATCTCAGTTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGGGTAAGAGAGCTTAGTGTAGGTTTCTGTGTTTGTTAATTTGATAACCCTTTTCCTAATTATTTATCTACCAATTACAGCCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAGGTGTGGTGATGTTCTGCTATCCTTTGCTTAGTTTTCTTATATCTACCCAATACTAACTTCTGTCTATCAATTTCAGAGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAGGTTTCTGCTTTACCTGCTTCTTTCCAGTCTTTACACTGCATACACTTTGTTTCAGTCATTGAACAACCCCCACGTCTCTTGTTACAATTTATATTTCTGGATTGCAGGGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCT</genome_strand>
        <mrna_strand>AATGTCTGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCAAAAGG................................................................................................................................TTACGTGCACGGAGATGTAAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGG.............................................................................CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAG............................................................................AGGGACCGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATACACACTAATTTTTCTTCATCGAGGGAGGCTCCCATGGCAAGGCTATCAG...........................................................................................................GGTGATAACAAATCATTTTTAGTCTGCAAAAAAAAGATGGCAACATCTCCAGAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455810" ref_strand="+" ref_description="SGN-E455810 [cSTS-27-M2]">
      <seq>tgggttgagtgctaataataaagtgactgcacaggaagatgaaagtacttctctttttcctgatcaggtgcaagtaggaggatctccagtttataaggttgaaaggaagttaggtaaaggtggttttggacaggtgtttttgggtcgccgtcttaccggtggaaatgaacgtgctagtggtccattggctttggaggtcgcactgaaatttgagcatcgaaatagcaaaggttgtagctatggccctccatatgagtggcaagtttacaatactcttggaggcagccatggagtgcctagagtgcattataaaggacgggcaggagactattatgtgatggttatggacatgctaggccctagcttatgggatgtatggaattcctctgggcaatcaatgtctgcagaaatggtggcttgtattgcagttgagtcattgtcgattttggaaaagctgcatgcaaaaggttacgtgcacggagatgtaaagccagaaaactttttacttggccagccatcaacaccacaagagaagaaagtgttcctagttgacttgggactggccacaaagtggaaagacacttcaaaagggcagcatgtcggatatgatcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="73262" stop="69010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72962" g_stop="72896" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72895" i_stop="71788" i_length="1108">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71787" g_stop="71659" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="196" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71658" i_stop="71493" i_length="166">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71492" g_stop="71419" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="270" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71418" i_stop="71330" i_length="89">
            <donor d_prob="0.969" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71329" g_stop="71260" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="340" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71259" i_stop="70234" i_length="1026">
            <donor d_prob="0.511" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70233" g_stop="70178" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="396" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70177" i_stop="69734" i_length="444">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69733" g_stop="69662" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="468" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69661" i_stop="69534" i_length="128">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69533" g_stop="69439" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="563" r_length="95" r_score="0.937"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69438" i_stop="69362" i_length="77">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69361" g_stop="69310" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="615" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E455810" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72962" e_stop="72896"/>
          <exon e_start="71787" e_stop="71659"/>
          <exon e_start="71492" e_stop="71419"/>
          <exon e_start="71329" e_stop="71260"/>
          <exon e_start="70233" e_stop="70178"/>
          <exon e_start="69733" e_stop="69662"/>
          <exon e_start="69533" e_stop="69439"/>
          <exon e_start="69361" e_stop="69310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGAGTGCTAATAATAAAGTGACTGCACAGGAAGATGAAAGTACTTCTCTTTTTCCTGATCAGGTGGGTGATCATTCATCTCTTCATCTGAATCTTAAAAAAAAACTAGCTTTACATCTATATATGCTTGGTTCTTATACATGATCATCTTGTTTTAGAAAATTTTGATGTTGTGTCTTTGTTGTTTGAAGCAAGTGATTGTGTTGTTTTGTTAGGTGTTGTGGGATTTTGTGTTTTTGAATCATTATAAATGTGTATTGCTCGGTTAAATTCGGGCTATTTCTGGAAAAAAGAGAGTAGATTTGGTACTATATTGACCATGGTGGATTGTTTTCCATTGTATTGATGTCATTGGTCTTACTTACATACATGTTTTGCTTATGTTTTGGAATTGTTATCTATATGTAGCATCTTTCTCTTCCCTGATCAGGTCGGTGATCATCAATTTCTGTATCTAATCCCAAAAAAGCTAGTTGGGGCTGGTTTTAGTGAAGCCTGCAAATTTATGCGATGTTCTTAGATGTTACATCTTCCTTTAGATAATTTTGATGTTATGTCTTTCTTGTTTGAAGCAATGTGTTGTTTTGCTAGGTGTTCTAGGTGTTTAAAGGGATTTTATGTTTTGAATCATAATAAATGTGTATTTCTATGTTAAATTCTGGCTATTTCTTGTAAAAGGAAGTAAATTTGGTACTATATTGACCTTGAGGAGATAGTTGGAGATCGCATCAATGTCGTTAGTCCTACTCAAATACATGTTTTGTGTATGCTTTAGCATTGCTATCTATTTTTAGCCGCTATCATATATTTGATAGTAGGTATGTGAAGTAAATAGGGAATACTAGCATCTGAGCTCTAGAATTTCTTAATTCTAATACAATGTACTTACTATATCGTATATAATTACACAGTTATACCTGCTACTTAGTATGTGGAAGTTGCTTGATCCAGCCATAGACGACTGTCCATTCCCCTCCCATGTGATTCTCATCATTTCTGCAAGCCTTTTTAGCTTAAAAAAGCTTGATGACACATGTGACATTTAATTGCTAGAATCTCGATATTGAGCTTTACTGTCGTCGTGTTCTAAGTTCTTTTTTTTCTTCAAATCTTTGTATTAAATGTCGAAATTTCACTCATTTTTTGCTTTCTGTTTGAATGTTGTTTTCAGGTGCAAGTAGGAGGATCTCCAGTTTATAAGGTTGAAAGGAAGCTAGGTAAAGGTGGTTTTGGACAGGTGTTTTTGGGTCGCCGTCTTACCGGTGGAAATGAACGTGCTAGTGGTCCCTTGGCTTTGGAGGTAAAGTGGTTGCATATGAATAATCTATCCACTTTTTCCCGTTATCCTTTTCGACAAGGCTAATTTATCTGTCTACTAATCTTAGCGTCTTCTCGATGCAATTGTTAATGAAATCTTATTTTACGTGATAAAAGAAAACCATATTGATTTTCTTTTATGTCTCTAGGTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAAGTAAGGATTGATATCTTTTAAAGTTACTGTGTACACTTGTACTGAAATGAGATTTGCAGGACTGAAAGTTCCTTTTTTTTTTGGTTCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATGGTATGTTCACCAAGACAGATTTGCATTGATTATAGTAATGGAGGATAAAAAAATTGAGTTGTGGATATTTATTTTTGGGAGAAACATCAAGATAATGAGTTGAGACAGTGAATGTGACCTCTTTTAGCATTCTAATTTCAGCATCCAAAGAGAATTAAATAAAATATATTTAATAGGCAGGCAGCGTGATATATTTCAAGGTTTTAAGAGGGTCTCATATCTGCTCTTACCAAGCTAACAAATAGCTTTAGTGTACAATGGAGGTCTTTATTTTTTATTCACTTATTTAGCCAGGTCCTGTTCTAATTGAATGAGTGGAACTCTTTTGGTAGTTGCTTACTTTCTTTTTGGTATGATTGTCTTTTGAGGGGACTGATTTTGTTTTGCTATTACACTTCCCCTGGATCTCAGAAGTCGTCTTTGATATTAGCTGCCGGGCTTTGGTCTAGTGTTAAGAACGTTACTTGTGATGTGTGGGTTAGGAACACGTCACATGTTCAAACCTTGCTGCAAATGAAAGCCTAGTACTCCTATTTAAGTGGAGAACATTGGAGGGGTGAGCCATCATCCACAGAGTGTGAAACCATGTACCACTGGTCCTGGTGGATTTCTCGACTACAAAAAAAGTGACCATTTTACTTCAAATTGTTAGTCCACTCGTCTTACAAAAATTGTCACTCTTTCCTGTTCAATTTAAGAAAAAAAGGGACCTTTGTCAAGCATATTCTCCTAATTGTTTAGTAAAGAGTCTGCTAGAATCATGTCCGTTTTCTTGCTGTTGAAGATTGATTGATAGAATAAAGATATAATTTTTTGAAATGGGATAAAATTTTGGGACATACACAGAAAGTTAAGGAGAGATAAATATTTCTGATCCGATGAGTTACCAGCAAAGTGGTTGTTAATGATTAGGACCTCTTTTCAATGAACGGATTCTGCTCTGTATGTTTTCTGGACTAGTGAATGCTGTTGTATATAATAATAAAATGTGTGTGCGTATTGACCTTATTATTATCATGTATGCAGGTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATCGTAAGTAGCTAATGCTAGTATTAAACATACTTACTGAACAAAGACTTCTTCAATTGTCAGACCTCCAGAAGTGGCTGCTTTTTCCCCACTCTTTCAGTTATTTTTGATTATTATGATAAATTGATAATAGAAATACCGTCGTTCAATAAGTCAACCTGCTCAAGGATGGCATTCTCAAATTGAAAAATGGTCTAAAATAAGTCACCAATTATTTGACATGAACTATGTAGTAATTCTAATTTCAAAGTTAAATGGTCCTTGATATCCATCCTTAAACACTGGTGATAAGGATCTGCTCGCAATTGTGTATAGTGTAGATTCTGATTTTCTGGGGTTTATTTCTAAGAACAGCAAAAACATCGTTGATAAACTTATTGAGTTTTGGTTTACCATATATCAATGTGTCAGTTGAATATGGTCTGCTCATAAATCCTACTTATGCAGAATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGGGTACGGATTCACTCTTTTCCTGCAATCAGTTTGGTTCTTTTTATTTGCTGAATGTTGAACTACTTTTAATTTGTAGTCATTGTACTTCTCTTTTGAATTCTTCGTAGTGACTTTTTTGTTGATCTCAGTTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGGGTAAGAGAGCTTAGTGTAGGTTTCTGTGTTTGTTAATTTGATAACCCTTTTCCTAATTATTTATCTACCAATTACAGCCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCG</genome_strand>
        <mrna_strand>TGGGTTGAGTGCTAATAATAAAGTGACTGCACAGGAAGATGAAAGTACTTCTCTTTTTCCTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGTAGGAGGATCTCCAGTTTATAAGGTTGAAAGGAAGTTAGGTAAAGGTGGTTTTGGACAGGTGTTTTTGGGTCGCCGTCTTACCGGTGGAAATGAACGTGCTAGTGGTCCATTGGCTTTGGAG......................................................................................................................................................................GTCGCACTGAAATTTGAGCATCGAAATAGCAAAGGTTGTAGCTATGGCCCTCCATATGAGTGGCAAGTTTACAA.........................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGACTATTATGTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCTGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCAAAAGG................................................................................................................................TTACGTGCACGGAGATGTAAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAAGTGTTCCTAGTTGACTTGGGACTGG.............................................................................CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454515" ref_strand="+" ref_description="SGN-E454515 [cSTS-23-H7]">
      <seq>atctccagtttataaggttgaaaggaagttaggtaaaggtggttttggacaggtgtttttgggtcgccgtcttaccggtggaaatgaacgtgctagtggtccattggctttggaggtcgcactgaaatttgagcatcgaaatagcaaaggttgtagctatggccctccatatgagtggcaagtttacaatactcttggaggcagccatggagtgcctagagtgcattataaaggacgggcaggagactattatgtgatggttatggacatgctaggccctagcttatgggatgtatggaattcctctgggcaatcaatgtctgcagaaatggtggcttgtattgcagttgagtcattgtcgattttggaaaagctgcatgcaaaaggttacgtgcacggagatgtaaagccagaaaactttttacttggccagccatcaacaccacaagagaagaagttgttcctagttgacttgggactggccacaaagtggaaagacacttcaaaagggcagcatgtcngatatgatcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="72073" stop="69010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71773" g_stop="71659" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71658" i_stop="71493" i_length="166">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71492" g_stop="71419" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="189" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71418" i_stop="71330" i_length="89">
            <donor d_prob="0.969" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71329" g_stop="71260" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="259" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71259" i_stop="70234" i_length="1026">
            <donor d_prob="0.511" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70233" g_stop="70178" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="315" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70177" i_stop="69734" i_length="444">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69733" g_stop="69662" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="387" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69661" i_stop="69534" i_length="128">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69533" g_stop="69439" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="482" r_length="95" r_score="0.958"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69438" i_stop="69362" i_length="77">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69361" g_stop="69310" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="534" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E454515" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71773" e_stop="71659"/>
          <exon e_start="71492" e_stop="71419"/>
          <exon e_start="71329" e_stop="71260"/>
          <exon e_start="70233" e_stop="70178"/>
          <exon e_start="69733" e_stop="69662"/>
          <exon e_start="69533" e_stop="69439"/>
          <exon e_start="69361" e_stop="69310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCAGTTTATAAGGTTGAAAGGAAGCTAGGTAAAGGTGGTTTTGGACAGGTGTTTTTGGGTCGCCGTCTTACCGGTGGAAATGAACGTGCTAGTGGTCCCTTGGCTTTGGAGGTAAAGTGGTTGCATATGAATAATCTATCCACTTTTTCCCGTTATCCTTTTCGACAAGGCTAATTTATCTGTCTACTAATCTTAGCGTCTTCTCGATGCAATTGTTAATGAAATCTTATTTTACGTGATAAAAGAAAACCATATTGATTTTCTTTTATGTCTCTAGGTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAAGTAAGGATTGATATCTTTTAAAGTTACTGTGTACACTTGTACTGAAATGAGATTTGCAGGACTGAAAGTTCCTTTTTTTTTTGGTTCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATGGTATGTTCACCAAGACAGATTTGCATTGATTATAGTAATGGAGGATAAAAAAATTGAGTTGTGGATATTTATTTTTGGGAGAAACATCAAGATAATGAGTTGAGACAGTGAATGTGACCTCTTTTAGCATTCTAATTTCAGCATCCAAAGAGAATTAAATAAAATATATTTAATAGGCAGGCAGCGTGATATATTTCAAGGTTTTAAGAGGGTCTCATATCTGCTCTTACCAAGCTAACAAATAGCTTTAGTGTACAATGGAGGTCTTTATTTTTTATTCACTTATTTAGCCAGGTCCTGTTCTAATTGAATGAGTGGAACTCTTTTGGTAGTTGCTTACTTTCTTTTTGGTATGATTGTCTTTTGAGGGGACTGATTTTGTTTTGCTATTACACTTCCCCTGGATCTCAGAAGTCGTCTTTGATATTAGCTGCCGGGCTTTGGTCTAGTGTTAAGAACGTTACTTGTGATGTGTGGGTTAGGAACACGTCACATGTTCAAACCTTGCTGCAAATGAAAGCCTAGTACTCCTATTTAAGTGGAGAACATTGGAGGGGTGAGCCATCATCCACAGAGTGTGAAACCATGTACCACTGGTCCTGGTGGATTTCTCGACTACAAAAAAAGTGACCATTTTACTTCAAATTGTTAGTCCACTCGTCTTACAAAAATTGTCACTCTTTCCTGTTCAATTTAAGAAAAAAAGGGACCTTTGTCAAGCATATTCTCCTAATTGTTTAGTAAAGAGTCTGCTAGAATCATGTCCGTTTTCTTGCTGTTGAAGATTGATTGATAGAATAAAGATATAATTTTTTGAAATGGGATAAAATTTTGGGACATACACAGAAAGTTAAGGAGAGATAAATATTTCTGATCCGATGAGTTACCAGCAAAGTGGTTGTTAATGATTAGGACCTCTTTTCAATGAACGGATTCTGCTCTGTATGTTTTCTGGACTAGTGAATGCTGTTGTATATAATAATAAAATGTGTGTGCGTATTGACCTTATTATTATCATGTATGCAGGTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATCGTAAGTAGCTAATGCTAGTATTAAACATACTTACTGAACAAAGACTTCTTCAATTGTCAGACCTCCAGAAGTGGCTGCTTTTTCCCCACTCTTTCAGTTATTTTTGATTATTATGATAAATTGATAATAGAAATACCGTCGTTCAATAAGTCAACCTGCTCAAGGATGGCATTCTCAAATTGAAAAATGGTCTAAAATAAGTCACCAATTATTTGACATGAACTATGTAGTAATTCTAATTTCAAAGTTAAATGGTCCTTGATATCCATCCTTAAACACTGGTGATAAGGATCTGCTCGCAATTGTGTATAGTGTAGATTCTGATTTTCTGGGGTTTATTTCTAAGAACAGCAAAAACATCGTTGATAAACTTATTGAGTTTTGGTTTACCATATATCAATGTGTCAGTTGAATATGGTCTGCTCATAAATCCTACTTATGCAGAATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGGGTACGGATTCACTCTTTTCCTGCAATCAGTTTGGTTCTTTTTATTTGCTGAATGTTGAACTACTTTTAATTTGTAGTCATTGTACTTCTCTTTTGAATTCTTCGTAGTGACTTTTTTGTTGATCTCAGTTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGGGTAAGAGAGCTTAGTGTAGGTTTCTGTGTTTGTTAATTTGATAACCCTTTTCCTAATTATTTATCTACCAATTACAGCCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCG</genome_strand>
        <mrna_strand>ATCTCCAGTTTATAAGGTTGAAAGGAAGTTAGGTAAAGGTGGTTTTGGACAGGTGTTTTTGGGTCGCCGTCTTACCGGTGGAAATGAACGTGCTAGTGGTCCATTGGCTTTGGAG......................................................................................................................................................................GTCGCACTGAAATTTGAGCATCGAAATAGCAAAGGTTGTAGCTATGGCCCTCCATATGAGTGGCAAGTTTACAA.........................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGACTATTATGTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCTGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCAAAAGG................................................................................................................................TTACGTGCACGGAGATGTAAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGG.............................................................................CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCNGATATGATCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455049" ref_strand="+" ref_description="SGN-E455049 [cSTS-25-M5]">
      <seq>ggaagatgaaagtacttctctttttcctgatcaggtgcaagtaggaggatctccagtttataaggttgaaaggaagttaggtaaaggtggttttggacaggtgtttttgggtcgccgtcttaccggtggaaatgaacgtgctagtggtcccttggctttggaggtcgcactgaaatttgagcatcgaaacagcaaaggctgtagctatggccctccatatgagtggcaagtttacaatactcttggaggcagccatggagtgcctagagtgcattataaaggacgggcaggagactattatgtgatggttatggacatgctaggccctagcttatgggatgtatggaattcctctgggcaatcaatgtctgcagaaatggtggcttgtattgcagttgagtcattgtcgattttggaaaagctgcatgcaaaaggttacgtgcacggagatgtaaagccagaaaactttttacttggccagccatcaacaccacaagagaagaagttgttcctagttgacttgggactggccacaaagtggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="73229" stop="69130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72929" g_stop="72896" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72895" i_stop="71788" i_length="1108">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71787" g_stop="71659" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="163" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71658" i_stop="71493" i_length="166">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71492" g_stop="71419" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="237" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71418" i_stop="71330" i_length="89">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71329" g_stop="71260" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="307" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71259" i_stop="70234" i_length="1026">
            <donor d_prob="0.511" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70233" g_stop="70178" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="363" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70177" i_stop="69734" i_length="444">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69733" g_stop="69662" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="435" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69661" i_stop="69534" i_length="128">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69533" g_stop="69439" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="530" r_length="95" r_score="0.958"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69438" i_stop="69362" i_length="77">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69361" g_stop="69347" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="545" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E455049" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72929" e_stop="72896"/>
          <exon e_start="71787" e_stop="71659"/>
          <exon e_start="71492" e_stop="71419"/>
          <exon e_start="71329" e_stop="71260"/>
          <exon e_start="70233" e_stop="70178"/>
          <exon e_start="69733" e_stop="69662"/>
          <exon e_start="69533" e_stop="69439"/>
          <exon e_start="69361" e_stop="69347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATGAAAGTACTTCTCTTTTTCCTGATCAGGTGGGTGATCATTCATCTCTTCATCTGAATCTTAAAAAAAAACTAGCTTTACATCTATATATGCTTGGTTCTTATACATGATCATCTTGTTTTAGAAAATTTTGATGTTGTGTCTTTGTTGTTTGAAGCAAGTGATTGTGTTGTTTTGTTAGGTGTTGTGGGATTTTGTGTTTTTGAATCATTATAAATGTGTATTGCTCGGTTAAATTCGGGCTATTTCTGGAAAAAAGAGAGTAGATTTGGTACTATATTGACCATGGTGGATTGTTTTCCATTGTATTGATGTCATTGGTCTTACTTACATACATGTTTTGCTTATGTTTTGGAATTGTTATCTATATGTAGCATCTTTCTCTTCCCTGATCAGGTCGGTGATCATCAATTTCTGTATCTAATCCCAAAAAAGCTAGTTGGGGCTGGTTTTAGTGAAGCCTGCAAATTTATGCGATGTTCTTAGATGTTACATCTTCCTTTAGATAATTTTGATGTTATGTCTTTCTTGTTTGAAGCAATGTGTTGTTTTGCTAGGTGTTCTAGGTGTTTAAAGGGATTTTATGTTTTGAATCATAATAAATGTGTATTTCTATGTTAAATTCTGGCTATTTCTTGTAAAAGGAAGTAAATTTGGTACTATATTGACCTTGAGGAGATAGTTGGAGATCGCATCAATGTCGTTAGTCCTACTCAAATACATGTTTTGTGTATGCTTTAGCATTGCTATCTATTTTTAGCCGCTATCATATATTTGATAGTAGGTATGTGAAGTAAATAGGGAATACTAGCATCTGAGCTCTAGAATTTCTTAATTCTAATACAATGTACTTACTATATCGTATATAATTACACAGTTATACCTGCTACTTAGTATGTGGAAGTTGCTTGATCCAGCCATAGACGACTGTCCATTCCCCTCCCATGTGATTCTCATCATTTCTGCAAGCCTTTTTAGCTTAAAAAAGCTTGATGACACATGTGACATTTAATTGCTAGAATCTCGATATTGAGCTTTACTGTCGTCGTGTTCTAAGTTCTTTTTTTTCTTCAAATCTTTGTATTAAATGTCGAAATTTCACTCATTTTTTGCTTTCTGTTTGAATGTTGTTTTCAGGTGCAAGTAGGAGGATCTCCAGTTTATAAGGTTGAAAGGAAGCTAGGTAAAGGTGGTTTTGGACAGGTGTTTTTGGGTCGCCGTCTTACCGGTGGAAATGAACGTGCTAGTGGTCCCTTGGCTTTGGAGGTAAAGTGGTTGCATATGAATAATCTATCCACTTTTTCCCGTTATCCTTTTCGACAAGGCTAATTTATCTGTCTACTAATCTTAGCGTCTTCTCGATGCAATTGTTAATGAAATCTTATTTTACGTGATAAAAGAAAACCATATTGATTTTCTTTTATGTCTCTAGGTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAAGTAAGGATTGATATCTTTTAAAGTTACTGTGTACACTTGTACTGAAATGAGATTTGCAGGACTGAAAGTTCCTTTTTTTTTTGGTTCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATGGTATGTTCACCAAGACAGATTTGCATTGATTATAGTAATGGAGGATAAAAAAATTGAGTTGTGGATATTTATTTTTGGGAGAAACATCAAGATAATGAGTTGAGACAGTGAATGTGACCTCTTTTAGCATTCTAATTTCAGCATCCAAAGAGAATTAAATAAAATATATTTAATAGGCAGGCAGCGTGATATATTTCAAGGTTTTAAGAGGGTCTCATATCTGCTCTTACCAAGCTAACAAATAGCTTTAGTGTACAATGGAGGTCTTTATTTTTTATTCACTTATTTAGCCAGGTCCTGTTCTAATTGAATGAGTGGAACTCTTTTGGTAGTTGCTTACTTTCTTTTTGGTATGATTGTCTTTTGAGGGGACTGATTTTGTTTTGCTATTACACTTCCCCTGGATCTCAGAAGTCGTCTTTGATATTAGCTGCCGGGCTTTGGTCTAGTGTTAAGAACGTTACTTGTGATGTGTGGGTTAGGAACACGTCACATGTTCAAACCTTGCTGCAAATGAAAGCCTAGTACTCCTATTTAAGTGGAGAACATTGGAGGGGTGAGCCATCATCCACAGAGTGTGAAACCATGTACCACTGGTCCTGGTGGATTTCTCGACTACAAAAAAAGTGACCATTTTACTTCAAATTGTTAGTCCACTCGTCTTACAAAAATTGTCACTCTTTCCTGTTCAATTTAAGAAAAAAAGGGACCTTTGTCAAGCATATTCTCCTAATTGTTTAGTAAAGAGTCTGCTAGAATCATGTCCGTTTTCTTGCTGTTGAAGATTGATTGATAGAATAAAGATATAATTTTTTGAAATGGGATAAAATTTTGGGACATACACAGAAAGTTAAGGAGAGATAAATATTTCTGATCCGATGAGTTACCAGCAAAGTGGTTGTTAATGATTAGGACCTCTTTTCAATGAACGGATTCTGCTCTGTATGTTTTCTGGACTAGTGAATGCTGTTGTATATAATAATAAAATGTGTGTGCGTATTGACCTTATTATTATCATGTATGCAGGTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATCGTAAGTAGCTAATGCTAGTATTAAACATACTTACTGAACAAAGACTTCTTCAATTGTCAGACCTCCAGAAGTGGCTGCTTTTTCCCCACTCTTTCAGTTATTTTTGATTATTATGATAAATTGATAATAGAAATACCGTCGTTCAATAAGTCAACCTGCTCAAGGATGGCATTCTCAAATTGAAAAATGGTCTAAAATAAGTCACCAATTATTTGACATGAACTATGTAGTAATTCTAATTTCAAAGTTAAATGGTCCTTGATATCCATCCTTAAACACTGGTGATAAGGATCTGCTCGCAATTGTGTATAGTGTAGATTCTGATTTTCTGGGGTTTATTTCTAAGAACAGCAAAAACATCGTTGATAAACTTATTGAGTTTTGGTTTACCATATATCAATGTGTCAGTTGAATATGGTCTGCTCATAAATCCTACTTATGCAGAATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGGGTACGGATTCACTCTTTTCCTGCAATCAGTTTGGTTCTTTTTATTTGCTGAATGTTGAACTACTTTTAATTTGTAGTCATTGTACTTCTCTTTTGAATTCTTCGTAGTGACTTTTTTGTTGATCTCAGTTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGGGTAAGAGAGCTTAGTGTAGGTTTCTGTGTTTGTTAATTTGATAACCCTTTTCCTAATTATTTATCTACCAATTACAGCCACAAAGTGGAAAG</genome_strand>
        <mrna_strand>GGAAGATGAAAGTACTTCTCTTTTTCCTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGTAGGAGGATCTCCAGTTTATAAGGTTGAAAGGAAGTTAGGTAAAGGTGGTTTTGGACAGGTGTTTTTGGGTCGCCGTCTTACCGGTGGAAATGAACGTGCTAGTGGTCCCTTGGCTTTGGAG......................................................................................................................................................................GTCGCACTGAAATTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAAGTTTACAA.........................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGACTATTATGTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCTGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCAAAAGG................................................................................................................................TTACGTGCACGGAGATGTAAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGG.............................................................................CCACAAAGTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720812" ref_strand="+" ref_description="SGN-E720812 [FC11DG01]">
      <seq>cccccactctctctctaaaagtagtgctttttcatcgacattcacgcggattacagatcgtttacagtatttgaacaaaccctagcatcaaaagtttgtttttttttcttccagtttttgaatttggtttcaaaaattcaatcgagtttgagtttgttgtaaaaacggatttggggttgtttttgtatgtttagggttttgattatgatgatgaaagtataagtgatgtgttgcaatcggaatcgggttgttgtttttgttcaattttatatgggtaaaaaagaatgccggatttgcggagtggggtatgtcggcgccgtgctcctcctccagtagttgaaacaaaacccgaaacgaaaaaaagggttggtggcggtggtgttggtggtcggagttatataaagactcgtgctgctaaggctaaggcagcggaagcagaagcaaagcttgtggaagtagaggaagaggaagtgaaggagaacgaaaacgagagagtagagggagaagaatttgaagaaaagcataaaatgggtgatgagagtggtggtttgagtgctaataataaagtgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="73806" stop="72634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73506" g_stop="72934" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E720812" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73506" e_stop="72934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCACTCTCTCTCTAAAAGTAGTGCTTTTTCATCGACATTCACGCGGATTACAGATCGTTTACAGTATTTGAACAAACCCTAGCATCAAAAGTTTGTTTTTTTTTCTTCCAGTTTTTGAATTTGGTTTCAGAAATTCAATCGAGTTTGAGTTTGTTGTAGAAACGGATTTGGGGTTGTTTTTGTATGTTTAGGGTTTTGATTATGATGATGAAAGTATAAGTGATGTGTTGCAATCGGAATCGGGTTGTTGTTTTTGTTCAATTTTATATGGGTAAAAAAGAATGCCGGAGTTGCGGAGTGGGGTATGTCGGCGCCGTGCTCCTCCTCCAGTAGTTGAAACAAAACCCGAAACGAAGAAAAGGGTTGGTGGCGGTGGTGTTGGTGGTCGGAGTTATATAAAGACTCGTGCTGCTAAGGCTAAGGCAGCGGAAGCAGAAGCAAAGCTTGTGGAAGTAGAGGAAGAGGAAGTGAAGGAGAACGAAAACGAGAGAGTAGAGGGAGAAGAAGTTGAAGAAGAGCATAAGATGGGTGATGAGAGTGGTGGTTTGAGTGCTAATAATAAAGTGACTG</genome_strand>
        <mrna_strand>CCCCCACTCTCTCTCTAAAAGTAGTGCTTTTTCATCGACATTCACGCGGATTACAGATCGTTTACAGTATTTGAACAAACCCTAGCATCAAAAGTTTGTTTTTTTTTCTTCCAGTTTTTGAATTTGGTTTCAAAAATTCAATCGAGTTTGAGTTTGTTGTAAAAACGGATTTGGGGTTGTTTTTGTATGTTTAGGGTTTTGATTATGATGATGAAAGTATAAGTGATGTGTTGCAATCGGAATCGGGTTGTTGTTTTTGTTCAATTTTATATGGGTAAAAAAGAATGCCGGATTTGCGGAGTGGGGTATGTCGGCGCCGTGCTCCTCCTCCAGTAGTTGAAACAAAACCCGAAACGAAAAAAAGGGTTGGTGGCGGTGGTGTTGGTGGTCGGAGTTATATAAAGACTCGTGCTGCTAAGGCTAAGGCAGCGGAAGCAGAAGCAAAGCTTGTGGAAGTAGAGGAAGAGGAAGTGAAGGAGAACGAAAACGAGAGAGTAGAGGGAGAAGAATTTGAAGAAAAGCATAAAATGGGTGATGAGAGTGGTGGTTTGAGTGCTAATAATAAAGTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366438" ref_strand="+" ref_description="SGN-E366438 [cLPT-1-J24]">
      <seq>tcccccactctctctctaaaagtagtgctttttcatcgacattcacgcggattacagatcgtttactgtatttgaacaaaccctagcatcaaaaatttaatttttttttcagtttttgaatttggtttcagaaattcaatcgagtttgagtttgttgtagaaacggatttggggttgtttttgtatgtttagggttttgattatgatggtgaaagtataagtgatgtgttgcaatcggaatcgggttgttgtttttgttgttcaatttatatgggtaaaaaagaatgccggagttgcggagtggggtatgtcggcgccgtgctcctcctccagtagttgaaacaaaacccgaaacgaaaaaaagggttggtggcggtggtgttggtgttggtggtcggagttatataaagactcgtgctgctaaggctaaggcggcggaagcagaagcaaagcttgtggaagtagaggaagaggaagaggaagaggaagtgaaggttgaggtgaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="73807" stop="72718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73507" g_stop="73003" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="SGN-E366438" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73507" e_stop="73003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCCACTCTCTCTCTAAAAGTAGTGCTTTTTCATCGACATTCACGCGGATTACAGATCGTTTACAGTATTTGAACAAACCCTAGCATCAAAAGTTTGTTTTTTTTTCTTCCAGTTTTTGAATTTGGTTTCAGAAATTCAATCGAGTTTGAGTTTGTTGTAGAAACGGATTTGGGGTTGTTTTTGTATGTTTAGGGTTTTGATTATGATGATGAAAGTATAAGTGATGTGTTGCAATCGGAATCGGGTTGTTGTTTTTG-T-TCAATTTTATATGGGTAAAAAAGAATGCCGGAGTTGCGGAGTGGGGTATGTCGGCGCCGTGCTCCTCCTCCAGTAGTTGAAACAAAACCCGAAACGAAGAAAAGGGTTGGTGGC----G-G-TGGTGTTGGTGGTCGGAGTTATATAAAGACTCGTGCTGCTAAGGCTAAGGCAGCGGAAGCAGAAGCAAAGCTTGTGGAAGTAGAGGAAGAGGAAGTGAAGGAGAACGAAAACGAGAGAGTAGAGGGAG</genome_strand>
        <mrna_strand>TCCCCCACTCTCTCTCTAAAAGTAGTGCTTTTTCATCGACATTCACGCGGATTACAGATCGTTTACTGTATTTGAACAAACCCTAGCATCAAAAATTT-AATTTTTTT-TT-CAGTTTTTGAATTTGGTTTCAGAAATTCAATCGAGTTTGAGTTTGTTGTAGAAACGGATTTGGGGTTGTTTTTGTATGTTTAGGGTTTTGATTATGATGGTGAAAGTATAAGTGATGTGTTGCAATCGGAATCGGGTTGTTGTTTTTGTTGTTCAATTTATATGGGTAAAAAAGAATGCCGGAGTTGCGGAGTGGGGTATGTCGGCGCCGTGCTCCTCCTCCAGTAGTTGAAACAAAACCCGAAACGAAAAAAAGGGTTGGTGGCGGTGGTGTTGGTGTTGGTGGTCGGAGTTATATAAAGACTCGTGCTGCTAAGGCTAAGGCGGCGGAAGCAGAAGCAAAGCTTGTGGAAGTAGAGGAAGAGGAAGAGGAAGAGGAAGTGAA-GGTTGAGGTGAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>164</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3068" PGL_stop="10404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3068" e_stop="3169"/>
            <exon e_start="5213" e_stop="5291"/>
            <exon e_start="5382" e_stop="5553"/>
            <exon e_start="5681" e_stop="5761"/>
            <exon e_start="5877" e_stop="6057"/>
            <exon e_start="7710" e_stop="7737"/>
            <exon e_start="7827" e_stop="7917"/>
            <exon e_start="9130" e_stop="9220"/>
            <exon e_start="9316" e_stop="9394"/>
            <exon e_start="9932" e_stop="10404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.275" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.923" e_score="0.994"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="0.929"/>
          <exon-intron don_prob="0.944" acc_prob="0.970" e_score="0.956"/>
          <exon-intron don_prob="0.195" acc_prob="0.555" e_score="0.967"/>
          <exon-intron don_prob="0.951" acc_prob="0.957" e_score="0.949"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3068" e_stop="3169" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3170" i_stop="5212" i_length="2043"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5213" e_stop="5291" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.275">
            <gDNA_intron_boundary i_start="5292" i_stop="5381" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5382" e_stop="5553" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5554" i_stop="5680" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5681" e_stop="5761" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5762" i_stop="5876" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="5877" e_stop="6057" e_length="181"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.923">
            <gDNA_intron_boundary i_start="6058" i_stop="7709" i_length="1652"/>
          </intron>
          <exon e_serial="6" e_score="0.929">
            <gDNA_exon_boundary e_start="7710" e_stop="7737" e_length="28"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="0.956">
            <gDNA_exon_boundary e_start="7827" e_stop="7917" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.944" acc_prob="0.970">
            <gDNA_intron_boundary i_start="7918" i_stop="9129" i_length="1212"/>
          </intron>
          <exon e_serial="8" e_score="0.967">
            <gDNA_exon_boundary e_start="9130" e_stop="9220" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.195" acc_prob="0.555">
            <gDNA_intron_boundary i_start="9221" i_stop="9315" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="0.949">
            <gDNA_exon_boundary e_start="9316" e_stop="9394" e_length="79"/>
          </exon>
          <intron i_serial="9" don_prob="0.951" acc_prob="0.957">
            <gDNA_intron_boundary i_start="9395" i_stop="9931" i_length="537"/>
          </intron>
          <exon e_serial="10" e_score="0.918">
            <gDNA_exon_boundary e_start="9932" e_stop="10404" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3068" stop="3169"/>
              <exon start="5213" stop="5291"/>
              <exon start="5382" stop="5553"/>
              <exon start="5681" stop="5761"/>
              <exon start="5877" stop="6057"/>
              <exon start="7710" stop="7737"/>
              <exon start="7827" stop="7849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3068" stop="3169"/>
              <exon start="5213" stop="5291"/>
              <exon start="5382" stop="5553"/>
              <exon start="5681" stop="5761"/>
              <exon start="5877" stop="6057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3068" stop="3169"/>
              <exon start="5213" stop="5291"/>
              <exon start="5382" stop="5553"/>
              <exon start="5681" stop="5761"/>
              <exon start="5877" stop="6057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3115" stop="3169"/>
              <exon start="5213" stop="5291"/>
              <exon start="5382" stop="5553"/>
              <exon start="5681" stop="5761"/>
              <exon start="5877" stop="6021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5405" stop="5553"/>
              <exon start="5681" stop="5761"/>
              <exon start="5877" stop="6057"/>
              <exon start="7710" stop="7737"/>
              <exon start="7827" stop="7917"/>
              <exon start="9130" stop="9220"/>
              <exon start="9316" stop="9394"/>
              <exon start="9932" stop="10065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5405" stop="5553"/>
              <exon start="5681" stop="5761"/>
              <exon start="5877" stop="6057"/>
              <exon start="7710" stop="7737"/>
              <exon start="7827" stop="7917"/>
              <exon start="9130" stop="9220"/>
              <exon start="9316" stop="9394"/>
              <exon start="9932" stop="9963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5405" stop="5553"/>
              <exon start="5681" stop="5761"/>
              <exon start="5877" stop="6057"/>
              <exon start="7710" stop="7737"/>
              <exon start="7827" stop="7917"/>
              <exon start="9130" stop="9220"/>
              <exon start="9316" stop="9390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5997" stop="6057"/>
              <exon start="7710" stop="7737"/>
              <exon start="7827" stop="7917"/>
              <exon start="9130" stop="9220"/>
              <exon start="9316" stop="9394"/>
              <exon start="9932" stop="10404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429950" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG : ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG : TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG : GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA : GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT : GATTCTCAAACTGAAGTTCCCCCAAAAG : GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG : TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG : ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG : GTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGCAAAGTTTCATTTTAACATATTCTTTCGAGTTTTCGGGTGATAATGTCAGTTCACTCTTCCTTATACTGGAGAGGGAAGTTCTGATGATTCTTTCTGATGCATTAGCACAACAAATGTAACAATAGTTCACCTTGTTCCAATTATATCGGATGTCCCCTGAGAAACGAGTTGACTCTATGAATCATAATTTATTTACTAGTCGTAAAGAAGGGATTTGTTAGCTCTCGATTTTCTTGTGTAGTGAGGATTCAAATAGTCGATCCCAACTTGCTTTGGGATTGTGGTGTAGTCCTTGTTGTGTTCTTATTCAAATGCACTCTTTTGGCCTCCAAAAGAATATTTGGTTTCACA</gDNA_template>
            <first_frame> S  M  L  W  S  S  C  T  S  G  C  K  C  G  S  S  C  L  N  K  P  F  H  Q  R  P  V  K  K  M  K  I  V  K  :  T  E  K  C  G  T  G  I  V  A  D  E  D  I  K  T  K  E  F  V  V  E  Y  V  G  E   : V  I  D  D  K  T  C  E  E  R  L  W  K  L  K  H  S  G  E  T  N  F  Y  L  C  E  I  N  R  D  M  V  I  D  A  T  Y  K  G  N  K  S  R  Y  I  N  H  S  C  C  P  N  T  E  M  Q  R  W :   M  I  D  G  E  N  R  I  G  I  F  A  T  R  D  I  K  R  G  E  H  L  T  Y  D  Y  Q :   F  V  Q  F  G  A  D  Q  D  C  H  C  G  A  I  N  C  K  R  K  L  G  I  R  P  N  K  L  K  L  P  S  S  D  A  A  A  L  K  L  V  A  C  Q  V  A  A  P  F  P  K  E  K  V  L  L  S  A  K  H  :  D  S  Q  T  E  V  P  P  K   : G  N  W  S  S  D  S  A  R  K  I  Q  H  P  R  N  C  T  G  Q  I  I  R  I  I  R  Y  S  D  Q  S :   P  V  D  S  L  E  S  R  I  P  D  V  S  S  S  F  G  I  I  K  Q  F  D  R  I  T  K  K  H  L  :  I  M  F  E  D  G  S  T  E  H  L  D  L  S  K  E  D  W  R  F  C  N  F  A  *  S   : G  L  K  L  S  K  *  R  Y  T  *  F  N  L  S  S  *  Y  A  I  Y  S  *  Q  S  K  I  A  K  Y  P  L  P  L  L  L  L  Y  Q  M  C  K  V  S  F  *  H  I  L  S  S  F  R  V  I  M  S  V  H  S  S  L  Y  W  R  G  K  F  *  *  F  F  L  M  H  *  H  N  K  C  N  N  S  S  P  C  S  N  Y  I  G  C  P  L  R  N  E  L  T  L  *  I  I  I  Y  L  L  V  V  K  K  G  F  V  S  S  R  F  S  C  V  V  R  I  Q  I  V  D  P  N  L  L  W  D  C  G  V  V  L  V  V  F  L  F  K  C  T  L  L  A  S  K  R  I  F  G  F  T </first_frame>
            <second_frame>  A  C  Y  G  L  A  A  P  R  D  V  N  V  G  V  L  V  *  I  S  H  S  I  N  V  L  *  R  R  *  K  *  *  R :   L  R  N  V  A  L  G  L  W  Q  M  K  I  S  R  Q  K  S  L  L  *  S  M  L  E  K  :  L  L  M  T  R  H  V  K  S  D  F  G  N  *  S  T  V  G  K  Q  I  F  T  C  V  R  S  I  G  I  W  *  L  M  P  L  I  R  E  T  N  P  D  T  L  I  I  A  V  V  Q  I  L  R  C  R  D   : G  *  L  M  V  R  I  E  L  A  Y  L  Q  R  V  T  L  K  G  A  S  I  *  P  T  I  I   : S  L  F  N  L  V  Q  I  K  I  V  T  V  V  L  *  I  A  S  E  S  W  E  S  D  L  T  N  *  N  F  L  L  Q  M  L  L  H  *  S  *  W  H  A  R  *  L  R  P  F  P  K  R  K  Y  C  Y  R  Q  N  M :   I  L  K  L  K  F  P  Q  K  :  E  I  G  V  L  T  L  L  G  K  S  S  I  L  G  I  A  Q  V  K  L  *  E  *  F  A  I  L  T  R   : V  L  L  I  H  W  S  H  E  Y  L  M  F  P  V  P  L  E  S  *  N  S  L  T  E  S  P  K  N  I  * :   S  C  L  K  T  V  V  L  S  T  L  T  C  Q  K  K  I  G  D  F  V  T  L  L  N  R  :  V  L  N  C  R  N  K  D  I  H  D  S  T  S  V  A  D  T  R  Y  I  L  N  S  P  K  L  Q  S  I  L  C  L  C  S  C  C  T  K  C  A  K  F  H  F  N  I  F  F  R  V  F  G  *  *  C  Q  F  T  L  P  Y  T  G  E  G  S  S  D  D  S  F  *  C  I  S  T  T  N  V  T  I  V  H  L  V  P  I  I  S  D  V  P  *  E  T  S  *  L  Y  E  S  *  F  I  Y  *  S  *  R  R  D  L  L  A  L  D  F  L  V  *  *  G  F  K  *  S  I  P  T  C  F  G  I  V  V  *  S  L  L  C  S  Y  S  N  A  L  F  W  P  P  K  E  Y  L  V  S   </second_frame>
            <third_frame>   H  A  M  V  *  L  H  L  G  M  *  M  W  E  F  L  S  E  *  A  I  P  S  T  S  C  E  E  D  E  N  S  E   : D  *  E  M  W  H  W  D  C  G  R  *  R  Y  Q  D  K  R  V  C  C  R  V  C  W  R  S :   Y  *  *  Q  D  M  *  R  A  T  L  E  I  E  A  Q  W  G  N  K  F  L  L  V  *  D  Q  *  G  Y  G  D  *  C  H  L  *  G  K  Q  I  Q  I  H  *  S  *  L  L  S  K  Y  *  D  A  E  M  :  D  D  *  W  *  E  *  N  W  H  I  C  N  A  *  H  *  K  G  R  A  S  D  L  R  L  S  :  V  C  S  I  W  C  R  S  R  L  S  L  W  C  Y  K  L  Q  A  K  A  G  N  Q  T  *  Q  T  K  T  S  F  F  R  C  C  C  T  K  A  S  G  M  P  G  S  C  A  L  S  Q  R  E  S  T  A  I  G  K  T   : *  F  S  N  *  S  S  P  K  R :   K  L  E  F  *  L  C  S  E  N  P  A  S  S  E  L  H  R  S  N  Y  K  N  N  S  L  F  *  P  E  :  S  C  *  F  T  G  V  T  N  T  *  C  F  Q  F  L  W  N  H  K  T  V  *  Q  N  H  Q  K  T  F   : D  H  V  *  R  R  *  Y  *  A  P  *  L  V  K  R  R  L  A  I  L  *  L  C  L  I  G :   S  *  T  V  E  I  K  I  Y  M  I  Q  P  Q  *  L  I  R  D  I  F  L  T  V  Q  N  C  K  V  S  S  A  F  A  P  A  V  P  N  V  Q  S  F  I  L  T  Y  S  F  E  F  S  G  D  N  V  S  S  L  F  L  I  L  E  R  E  V  L  M  I  L  S  D  A  L  A  Q  Q  M  *  Q  *  F  T  L  F  Q  L  Y  R  M  S  P  E  K  R  V  D  S  M  N  H  N  L  F  T  S  R  K  E  G  I  C  *  L  S  I  F  L  C  S  E  D  S  N  S  R  S  Q  L  A  L  G  L  W  C  S  P  C  C  V  L  I  Q  M  H  S  F  G  L  Q  K  N  I  W  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3068" stop="3169"/>
                    <exon start="5213" stop="5291"/>
                    <exon start="5382" stop="5553"/>
                    <exon start="5681" stop="5761"/>
                    <exon start="5877" stop="6057"/>
                    <exon start="7710" stop="7737"/>
                    <exon start="7827" stop="7917"/>
                    <exon start="9130" stop="9220"/>
                    <exon start="9316" stop="9390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMLWSSCTSGCKCGSSCLNKPFHQRPVKKMKIVKTEKCGTGIVADEDIKTKEFVVEYVGEVIDDKTCEERLWKLKHSGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQRWMIDGENRIGIFATRDIKRGEHLTYDYQFVQFGADQDCHCGAINCKRKLGIRPNKLKLPSSDAAALKLVACQVAAPFPKEKVLLSAKHDSQTEVPPKGNWSSDSARKIQHPRNCTGQIIRIIRYSDQSPVDSLESRIPDVSSSFGIIKQFDRITKKHLIMFEDGSTEHLDLSKEDWRFCNFA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9978" stop="10172"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRDIFLTVQNCKVSSAFAPAVPNVQSFILTYSFEFSGDNVSSLFLILEREVLMILSDALAQQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3068" e_stop="3169"/>
            <exon e_start="5213" e_stop="5291"/>
            <exon e_start="5382" e_stop="5553"/>
            <exon e_start="5681" e_stop="5761"/>
            <exon e_start="5877" e_stop="6057"/>
            <exon e_start="6572" e_stop="6679"/>
            <exon e_start="7710" e_stop="7737"/>
            <exon e_start="7827" e_stop="7917"/>
            <exon e_start="9130" e_stop="9220"/>
            <exon e_start="9316" e_stop="9394"/>
            <exon e_start="9932" e_stop="10065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.275" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.950" e_score="0.989"/>
          <exon-intron don_prob="0.516" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.195" acc_prob="0.555" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3068" e_stop="3169" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3170" i_stop="5212" i_length="2043"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5213" e_stop="5291" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.275">
            <gDNA_intron_boundary i_start="5292" i_stop="5381" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5382" e_stop="5553" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5554" i_stop="5680" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5681" e_stop="5761" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5762" i_stop="5876" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="5877" e_stop="6057" e_length="181"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.950">
            <gDNA_intron_boundary i_start="6058" i_stop="6571" i_length="514"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6572" e_stop="6679" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.516" acc_prob="0.923">
            <gDNA_intron_boundary i_start="6680" i_stop="7709" i_length="1030"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="7710" e_stop="7737" e_length="28"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="7738" i_stop="7826" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="7827" e_stop="7917" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.944" acc_prob="0.970">
            <gDNA_intron_boundary i_start="7918" i_stop="9129" i_length="1212"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="9130" e_stop="9220" e_length="91"/>
          </exon>
          <intron i_serial="9" don_prob="0.195" acc_prob="0.555">
            <gDNA_intron_boundary i_start="9221" i_stop="9315" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="9316" e_stop="9394" e_length="79"/>
          </exon>
          <intron i_serial="10" don_prob="0.951" acc_prob="0.957">
            <gDNA_intron_boundary i_start="9395" i_stop="9931" i_length="537"/>
          </intron>
          <exon e_serial="11" e_score="0.992">
            <gDNA_exon_boundary e_start="9932" e_stop="10065" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3068" stop="3169"/>
              <exon start="5213" stop="5291"/>
              <exon start="5382" stop="5553"/>
              <exon start="5681" stop="5761"/>
              <exon start="5877" stop="6057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3068" stop="3169"/>
              <exon start="5213" stop="5291"/>
              <exon start="5382" stop="5553"/>
              <exon start="5681" stop="5761"/>
              <exon start="5877" stop="6057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3115" stop="3169"/>
              <exon start="5213" stop="5291"/>
              <exon start="5382" stop="5553"/>
              <exon start="5681" stop="5761"/>
              <exon start="5877" stop="6021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5999" stop="6057"/>
              <exon start="6572" stop="6679"/>
              <exon start="7710" stop="7737"/>
              <exon start="7827" stop="7917"/>
              <exon start="9130" stop="9220"/>
              <exon start="9316" stop="9394"/>
              <exon start="9932" stop="10053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5999" stop="6057"/>
              <exon start="6572" stop="6679"/>
              <exon start="7710" stop="7737"/>
              <exon start="7827" stop="7917"/>
              <exon start="9130" stop="9220"/>
              <exon start="9316" stop="9394"/>
              <exon start="9932" stop="10036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6001" stop="6057"/>
              <exon start="6572" stop="6679"/>
              <exon start="7710" stop="7737"/>
              <exon start="7827" stop="7917"/>
              <exon start="9130" stop="9220"/>
              <exon start="9316" stop="9394"/>
              <exon start="9932" stop="10065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG : ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG : TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG : GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA : GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT : AAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAG : GATTCTCAAACTGAAGTTCCCCCAAAAG : GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG : TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG : ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG : GTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGCAAAGTTTCATTT</gDNA_template>
            <first_frame> S  M  L  W  S  S  C  T  S  G  C  K  C  G  S  S  C  L  N  K  P  F  H  Q  R  P  V  K  K  M  K  I  V  K  :  T  E  K  C  G  T  G  I  V  A  D  E  D  I  K  T  K  E  F  V  V  E  Y  V  G  E   : V  I  D  D  K  T  C  E  E  R  L  W  K  L  K  H  S  G  E  T  N  F  Y  L  C  E  I  N  R  D  M  V  I  D  A  T  Y  K  G  N  K  S  R  Y  I  N  H  S  C  C  P  N  T  E  M  Q  R  W :   M  I  D  G  E  N  R  I  G  I  F  A  T  R  D  I  K  R  G  E  H  L  T  Y  D  Y  Q :   F  V  Q  F  G  A  D  Q  D  C  H  C  G  A  I  N  C  K  R  K  L  G  I  R  P  N  K  L  K  L  P  S  S  D  A  A  A  L  K  L  V  A  C  Q  V  A  A  P  F  P  K  E  K  V  L  L  S  A  K  H  :  K  N  T  Q  Q  F  Q  T  L  C  G  L  E  L  K  E  R  Q  H  E  D  H  E  *  Y  M  *  S  *  N  R  P  T  F  S  E  :  D  S  Q  T  E  V  P  P  K   : G  N  W  S  S  D  S  A  R  K  I  Q  H  P  R  N  C  T  G  Q  I  I  R  I  I  R  Y  S  D  Q  S :   P  V  D  S  L  E  S  R  I  P  D  V  S  S  S  F  G  I  I  K  Q  F  D  R  I  T  K  K  H  L  :  I  M  F  E  D  G  S  T  E  H  L  D  L  S  K  E  D  W  R  F  C  N  F  A  *  S   : G  L  K  L  S  K  *  R  Y  T  *  F  N  L  S  S  *  Y  A  I  Y  S  *  Q  S  K  I  A  K  Y  P  L  P  L  L  L  L  Y  Q  M  C  K  V  S  F </first_frame>
            <second_frame>  A  C  Y  G  L  A  A  P  R  D  V  N  V  G  V  L  V  *  I  S  H  S  I  N  V  L  *  R  R  *  K  *  *  R :   L  R  N  V  A  L  G  L  W  Q  M  K  I  S  R  Q  K  S  L  L  *  S  M  L  E  K  :  L  L  M  T  R  H  V  K  S  D  F  G  N  *  S  T  V  G  K  Q  I  F  T  C  V  R  S  I  G  I  W  *  L  M  P  L  I  R  E  T  N  P  D  T  L  I  I  A  V  V  Q  I  L  R  C  R  D   : G  *  L  M  V  R  I  E  L  A  Y  L  Q  R  V  T  L  K  G  A  S  I  *  P  T  I  I   : S  L  F  N  L  V  Q  I  K  I  V  T  V  V  L  *  I  A  S  E  S  W  E  S  D  L  T  N  *  N  F  L  L  Q  M  L  L  H  *  S  *  W  H  A  R  *  L  R  P  F  P  K  R  K  Y  C  Y  R  Q  N  I :   K  T  H  N  N  F  K  L  Y  V  D  *  S  L  K  K  G  N  T  R  I  M  S  N  I  C  E  A  E  T  D  L  L  F  L  R :   I  L  K  L  K  F  P  Q  K  :  E  I  G  V  L  T  L  L  G  K  S  S  I  L  G  I  A  Q  V  K  L  *  E  *  F  A  I  L  T  R   : V  L  L  I  H  W  S  H  E  Y  L  M  F  P  V  P  L  E  S  *  N  S  L  T  E  S  P  K  N  I  * :   S  C  L  K  T  V  V  L  S  T  L  T  C  Q  K  K  I  G  D  F  V  T  L  L  N  R  :  V  L  N  C  R  N  K  D  I  H  D  S  T  S  V  A  D  T  R  Y  I  L  N  S  P  K  L  Q  S  I  L  C  L  C  S  C  C  T  K  C  A  K  F  H   </second_frame>
            <third_frame>   H  A  M  V  *  L  H  L  G  M  *  M  W  E  F  L  S  E  *  A  I  P  S  T  S  C  E  E  D  E  N  S  E   : D  *  E  M  W  H  W  D  C  G  R  *  R  Y  Q  D  K  R  V  C  C  R  V  C  W  R  S :   Y  *  *  Q  D  M  *  R  A  T  L  E  I  E  A  Q  W  G  N  K  F  L  L  V  *  D  Q  *  G  Y  G  D  *  C  H  L  *  G  K  Q  I  Q  I  H  *  S  *  L  L  S  K  Y  *  D  A  E  M  :  D  D  *  W  *  E  *  N  W  H  I  C  N  A  *  H  *  K  G  R  A  S  D  L  R  L  S  :  V  C  S  I  W  C  R  S  R  L  S  L  W  C  Y  K  L  Q  A  K  A  G  N  Q  T  *  Q  T  K  T  S  F  F  R  C  C  C  T  K  A  S  G  M  P  G  S  C  A  L  S  Q  R  E  S  T  A  I  G  K  T   : *  K  H  T  T  I  S  N  S  M  W  T  R  A  *  R  K  A  T  R  G  S  *  V  I  Y  V  K  L  K  Q  T  Y  F  F  *   : G  F  S  N  *  S  S  P  K  R :   K  L  E  F  *  L  C  S  E  N  P  A  S  S  E  L  H  R  S  N  Y  K  N  N  S  L  F  *  P  E  :  S  C  *  F  T  G  V  T  N  T  *  C  F  Q  F  L  W  N  H  K  T  V  *  Q  N  H  Q  K  T  F   : D  H  V  *  R  R  *  Y  *  A  P  *  L  V  K  R  R  L  A  I  L  *  L  C  L  I  G :   S  *  T  V  E  I  K  I  Y  M  I  Q  P  Q  *  L  I  R  D  I  F  L  T  V  Q  N  C  K  V  S  S  A  F  A  P  A  V  P  N  V  Q  S  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3068" stop="3169"/>
                    <exon start="5213" stop="5291"/>
                    <exon start="5382" stop="5553"/>
                    <exon start="5681" stop="5761"/>
                    <exon start="5877" stop="6057"/>
                    <exon start="6572" stop="6643"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMLWSSCTSGCKCGSSCLNKPFHQRPVKKMKIVKTEKCGTGIVADEDIKTKEFVVEYVGEVIDDKTCEERLWKLKHSGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQRWMIDGENRIGIFATRDIKRGEHLTYDYQFVQFGADQDCHCGAINCKRKLGIRPNKLKLPSSDAAALKLVACQVAAPFPKEKVLLSAKHKNTQQFQTLCGLELKERQHEDHE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6659" stop="6679"/>
                    <exon start="7710" stop="7737"/>
                    <exon start="7827" stop="7917"/>
                    <exon start="9130" stop="9220"/>
                    <exon start="9316" stop="9390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRPTFSEDSQTEVPPKGNWSSDSARKIQHPRNCTGQIIRIIRYSDQSPVDSLESRIPDVSSSFGIIKQFDRITKKHLIMFEDGSTEHLDLSKEDWRFCNFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11692" PGL_stop="15550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11692" e_stop="11849"/>
            <exon e_start="12635" e_stop="12831"/>
            <exon e_start="14289" e_stop="14369"/>
            <exon e_start="14496" e_stop="14726"/>
            <exon e_start="14942" e_stop="15019"/>
            <exon e_start="15488" e_stop="15550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.998" e_score="0.994"/>
          <exon-intron don_prob="0.862" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="11692" e_stop="11849" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11850" i_stop="12634" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12635" e_stop="12831" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.862" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12832" i_stop="14288" i_length="1457"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14289" e_stop="14369" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.906" acc_prob="0.988">
            <gDNA_intron_boundary i_start="14370" i_stop="14495" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14496" e_stop="14726" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.916">
            <gDNA_intron_boundary i_start="14727" i_stop="14941" i_length="215"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14942" e_stop="15019" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.988">
            <gDNA_intron_boundary i_start="15020" i_stop="15487" i_length="468"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15488" e_stop="15550" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11692" stop="11849"/>
              <exon start="12635" stop="12831"/>
              <exon start="14289" stop="14369"/>
              <exon start="14496" stop="14726"/>
              <exon start="14942" stop="15019"/>
              <exon start="15488" stop="15550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAATTTCACTTTCTTCAGTGCAAATTCGAATTTGAATTTCAATGGCGACACTTTCATGGAGGCACCATACACTAATTCAAGCTCTACTCTCTCGTGGTCCGCTTAAAGAGAAGGATTTTCAATCTATATTCACCAGAATCATCGACAAATCCTCAG : GTAATCATCAGTCACTATTCAATGAATACCTGAGAAAGATAAACGGAGAGCTCGCTTATGTGCAGTTAGAGCTACGGGCATGTAGAAACCAGTATGACGGACATGTGCATTATGGTGTTGTGAACAATGTTTCAGATGAGTCATCCAAACTTGGTACTAAATATTCAGTTCCCCAGATAGCTTTCTATAAAGGCATT : ATTGAAGCAATTGTTCAAGACGCAGCAGCTCAGGGATTTATATCGACCATTGATGCACTGAACATACGGCTCGAAAATCAG : TTTCTAGCTGGAACAGAATCCCAGTCTCAGAGAGGTCATATTCCTGCAGCGTTTAGAAATTTTTCAATGTCTCAAAAGGAGAGGACCCTTGAGGAACTTGCGAGGGACCGCTGGCTTTCTCTAACAGATGGTAAGATAGGACTAGGAGTTCGTTCGTTCCTTGATCTCAGAAGTTGGTTTCGCAGTAATGAGGTTCCAGCATGTGAAGTTTGCAATGAAGCTGCTGTGAAG : GCTGAGCTTTGCAAAAATGAAGGCTGTAATGTTCGTATGCATATGTACTGTCTGAGAATGAAGTTCTCCAAAAGCAAG : GCTGAGAAAGTTTGTCCCGGTTGTGGGACAAGATGGCATTACAACATTGCAAAAGTAGAAGCT</gDNA_template>
            <first_frame> Q  N  F  T  F  F  S  A  N  S  N  L  N  F  N  G  D  T  F  M  E  A  P  Y  T  N  S  S  S  T  L  S  W  S  A  *  R  E  G  F  S  I  Y  I  H  Q  N  H  R  Q  I  L  R :   *  S  S  V  T  I  Q  *  I  P  E  K  D  K  R  R  A  R  L  C  A  V  R  A  T  G  M  *  K  P  V  *  R  T  C  A  L  W  C  C  E  Q  C  F  R  *  V  I  Q  T  W  Y  *  I  F  S  S  P  D  S  F  L  *  R  H   : Y  *  S  N  C  S  R  R  S  S  S  G  I  Y  I  D  H  *  C  T  E  H  T  A  R  K  S   : V  S  S  W  N  R  I  P  V  S  E  R  S  Y  S  C  S  V  *  K  F  F  N  V  S  K  G  E  D  P  *  G  T  C  E  G  P  L  A  F  S  N  R  W  *  D  R  T  R  S  S  F  V  P  *  S  Q  K  L  V  S  Q  *  *  G  S  S  M  *  S  L  Q  *  S  C  C  E   : G  *  A  L  Q  K  *  R  L  *  C  S  Y  A  Y  V  L  S  E  N  E  V  L  Q  K  Q   : G  *  E  S  L  S  R  L  W  D  K  M  A  L  Q  H  C  K  S  R  S  </first_frame>
            <second_frame>  R  I  S  L  S  S  V  Q  I  R  I  *  I  S  M  A  T  L  S  W  R  H  H  T  L  I  Q  A  L  L  S  R  G  P  L  K  E  K  D  F  Q  S  I  F  T  R  I  I  D  K  S  S   : G  N  H  Q  S  L  F  N  E  Y  L  R  K  I  N  G  E  L  A  Y  V  Q  L  E  L  R  A  C  R  N  Q  Y  D  G  H  V  H  Y  G  V  V  N  N  V  S  D  E  S  S  K  L  G  T  K  Y  S  V  P  Q  I  A  F  Y  K  G  I  :  I  E  A  I  V  Q  D  A  A  A  Q  G  F  I  S  T  I  D  A  L  N  I  R  L  E  N  Q  :  F  L  A  G  T  E  S  Q  S  Q  R  G  H  I  P  A  A  F  R  N  F  S  M  S  Q  K  E  R  T  L  E  E  L  A  R  D  R  W  L  S  L  T  D  G  K  I  G  L  G  V  R  S  F  L  D  L  R  S  W  F  R  S  N  E  V  P  A  C  E  V  C  N  E  A  A  V  K  :  A  E  L  C  K  N  E  G  C  N  V  R  M  H  M  Y  C  L  R  M  K  F  S  K  S  K  :  A  E  K  V  C  P  G  C  G  T  R  W  H  Y  N  I  A  K  V  E  A </second_frame>
            <third_frame>   E  F  H  F  L  Q  C  K  F  E  F  E  F  Q  W  R  H  F  H  G  G  T  I  H  *  F  K  L  Y  S  L  V  V  R  L  K  R  R  I  F  N  L  Y  S  P  E  S  S  T  N  P  Q  :  V  I  I  S  H  Y  S  M  N  T  *  E  R  *  T  E  S  S  L  M  C  S  *  S  Y  G  H  V  E  T  S  M  T  D  M  C  I  M  V  L  *  T  M  F  Q  M  S  H  P  N  L  V  L  N  I  Q  F  P  R  *  L  S  I  K  A  L :   L  K  Q  L  F  K  T  Q  Q  L  R  D  L  Y  R  P  L  M  H  *  T  Y  G  S  K  I  S :   F  *  L  E  Q  N  P  S  L  R  E  V  I  F  L  Q  R  L  E  I  F  Q  C  L  K  R  R  G  P  L  R  N  L  R  G  T  A  G  F  L  *  Q  M  V  R  *  D  *  E  F  V  R  S  L  I  S  E  V  G  F  A  V  M  R  F  Q  H  V  K  F  A  M  K  L  L  *  R :   L  S  F  A  K  M  K  A  V  M  F  V  C  I  C  T  V  *  E  *  S  S  P  K  A  R :   L  R  K  F  V  P  V  V  G  Q  D  G  I  T  T  L  Q  K  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11729" stop="11849"/>
                    <exon start="12635" stop="12831"/>
                    <exon start="14289" stop="14369"/>
                    <exon start="14496" stop="14726"/>
                    <exon start="14942" stop="15019"/>
                    <exon start="15488" stop="15550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISMATLSWRHHTLIQALLSRGPLKEKDFQSIFTRIIDKSSGNHQSLFNEYLRKINGELAYVQLELRACRNQYDGHVHYGVVNNVSDESSKLGTKYSVPQIAFYKGIIEAIVQDAAAQGFISTIDALNIRLENQFLAGTESQSQRGHIPAAFRNFSMSQKERTLEELARDRWLSLTDGKIGLGVRSFLDLRSWFRSNEVPACEVCNEAAVKAELCKNEGCNVRMHMYCLRMKFSKSKAEKVCPGCGTRWHYNIAKVEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17206" PGL_stop="16726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17206" e_stop="16726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="17206" e_stop="16726" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17206" stop="16726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTATAAGTGCATAACTTTTCACTTTATTGTTTGAGCATTGTGTTGATTTCTCTAAACTTGTTTTTCGTTGAACAAGATTGTTTTTTCATATACTCATGGAAAGCAACACCGTGCTCAGAAGTTAGAGTGAAATGTTATGCATTTGTGATTATATATTTTCTTGGCTAGAGTTGTATTGCCAAGTGAAGTGTTTTAATTGATTTGAACCTTCGAGTGAGTTGCTTCGTGATCTTCTTATGCCTTAGCTTCAGAACTTACCACTATATCATCAATTCTCGAAGAGTGTGGCCTACCTGAATGCTCTCACTAAACTATTCAGACTGTTGTAAATCTCTACTGTTGAGGCTTTATTTTTGGCAGTTCTTAAATGTGTATCTTAAGTTTTGTAATTAATTTATGTTTGTTTAGTATATCTCTGTTGTTACCCCTTTGTAATCTTTTGGATTCAATGATGAAGTTGGTTTGGAAATATTGTAG</gDNA_template>
            <first_frame> F  I  I  S  A  *  L  F  T  L  L  F  E  H  C  V  D  F  S  K  L  V  F  R  *  T  R  L  F  F  H  I  L  M  E  S  N  T  V  L  R  S  *  S  E  M  L  C  I  C  D  Y  I  F  S  W  L  E  L  Y  C  Q  V  K  C  F  N  *  F  E  P  S  S  E  L  L  R  D  L  L  M  P  *  L  Q  N  L  P  L  Y  H  Q  F  S  K  S  V  A  Y  L  N  A  L  T  K  L  F  R  L  L  *  I  S  T  V  E  A  L  F  L  A  V  L  K  C  V  S  *  V  L  *  L  I  Y  V  C  L  V  Y  L  C  C  Y  P  F  V  I  F  W  I  Q  *  *  S  W  F  G  N  I  V  </first_frame>
            <second_frame>  S  L  *  V  H  N  F  S  L  Y  C  L  S  I  V  L  I  S  L  N  L  F  F  V  E  Q  D  C  F  F  I  Y  S  W  K  A  T  P  C  S  E  V  R  V  K  C  Y  A  F  V  I  I  Y  F  L  G  *  S  C  I  A  K  *  S  V  L  I  D  L  N  L  R  V  S  C  F  V  I  F  L  C  L  S  F  R  T  Y  H  Y  I  I  N  S  R  R  V  W  P  T  *  M  L  S  L  N  Y  S  D  C  C  K  S  L  L  L  R  L  Y  F  W  Q  F  L  N  V  Y  L  K  F  C  N  *  F  M  F  V  *  Y  I  S  V  V  T  P  L  *  S  F  G  F  N  D  E  V  G  L  E  I  L  * </second_frame>
            <third_frame>   H  Y  K  C  I  T  F  H  F  I  V  *  A  L  C  *  F  L  *  T  C  F  S  L  N  K  I  V  F  S  Y  T  H  G  K  Q  H  R  A  Q  K  L  E  *  N  V  M  H  L  *  L  Y  I  F  L  A  R  V  V  L  P  S  E  V  F  *  L  I  *  T  F  E  *  V  A  S  *  S  S  Y  A  L  A  S  E  L  T  T  I  S  S  I  L  E  E  C  G  L  P  E  C  S  H  *  T  I  Q  T  V  V  N  L  Y  C  *  G  F  I  F  G  S  S  *  M  C  I  L  S  F  V  I  N  L  C  L  F  S  I  S  L  L  L  P  L  C  N  L  L  D  S  M  M  K  L  V  W  K  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0124N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19533" PGL_stop="17247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19533" e_stop="19342"/>
            <exon e_start="17536" e_stop="17247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.980" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="19533" e_stop="19342" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.980">
            <gDNA_intron_boundary i_start="19341" i_stop="17537" i_length="1805"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17536" e_stop="17247" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19533" stop="19342"/>
              <exon start="17536" stop="17247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTACCGCCGCCGGCTGCGGCATCTCTGCCACCCAATTCCGCCGTCATCGACGTTTGTGCCACGGCGGTGGTTTCATCTATAGCTTTGTACACTGAAAAATTACTGATTTTGAATTTTCGATGATACCCAGATGGAAGAAACATAGCAAAGAATGGTTTTTGTGGATCAGATCTGTATTCATCAAATGATG : GTATTTTCCATGTTAAGAATCTCGAAGCCAATCGATTGAAGACTAGTGCTCGAAAAAGTTATGACGTTGCTGGATGGAATCAGAAGATAAAAACTTATTGTTCGTTTGAAGGAAATGGCACTATGCCTCTCCCTAAAATGTTTAATAGATTGTACGACCAGGGCATGTGGAAGACGAGCTGCTTTCTTATATCACAATGATCAGTCTTCGGAAATTGATGATATAGTGGTTTGGAAGACGAGGCAAAAAAAGCTTACGAAGCAACCTAGTTGAATGTTCAAATCAATTGA</gDNA_template>
            <first_frame> C  Y  R  R  R  L  R  H  L  C  H  P  I  P  P  S  S  T  F  V  P  R  R  W  F  H  L  *  L  C  T  L  K  N  Y  *  F  *  I  F  D  D  T  Q  M  E  E  T  *  Q  R  M  V  F  V  D  Q  I  C  I  H  Q  M  M  :  V  F  S  M  L  R  I  S  K  P  I  D  *  R  L  V  L  E  K  V  M  T  L  L  D  G  I  R  R  *  K  L  I  V  R  L  K  E  M  A  L  C  L  S  L  K  C  L  I  D  C  T  T  R  A  C  G  R  R  A  A  F  L  Y  H  N  D  Q  S  S  E  I  D  D  I  V  V  W  K  T  R  Q  K  K  L  T  K  Q  P  S  *  M  F  K  S  I   </first_frame>
            <second_frame>  V  T  A  A  G  C  G  I  S  A  T  Q  F  R  R  H  R  R  L  C  H  G  G  G  F  I  Y  S  F  V  H  *  K  I  T  D  F  E  F  S  M  I  P  R  W  K  K  H  S  K  E  W  F  L  W  I  R  S  V  F  I  K  *  W :   Y  F  P  C  *  E  S  R  S  Q  S  I  E  D  *  C  S  K  K  L  *  R  C  W  M  E  S  E  D  K  N  L  L  F  V  *  R  K  W  H  Y  A  S  P  *  N  V  *  *  I  V  R  P  G  H  V  E  D  E  L  L  S  Y  I  T  M  I  S  L  R  K  L  M  I  *  W  F  G  R  R  G  K  K  S  L  R  S  N  L  V  E  C  S  N  Q  L  </second_frame>
            <third_frame>   L  P  P  P  A  A  A  S  L  P  P  N  S  A  V  I  D  V  C  A  T  A  V  V  S  S  I  A  L  Y  T  E  K  L  L  I  L  N  F  R  *  Y  P  D  G  R  N  I  A  K  N  G  F  C  G  S  D  L  Y  S  S  N  D   : G  I  F  H  V  K  N  L  E  A  N  R  L  K  T  S  A  R  K  S  Y  D  V  A  G  W  N  Q  K  I  K  T  Y  C  S  F  E  G  N  G  T  M  P  L  P  K  M  F  N  R  L  Y  D  Q  G  M  W  K  T  S  C  F  L  I  S  Q  *  S  V  F  G  N  *  *  Y  S  G  L  E  D  E  A  K  K  A  Y  E  A  T  *  L  N  V  Q  I  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19408" stop="19342"/>
                    <exon start="17536" stop="17337"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPDGRNIAKNGFCGSDLYSSNDGIFHVKNLEANRLKTSARKSYDVAGWNQKIKTYCSFEGNGTMPLPKMFNRLYDQGMWKTSCFLISQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22518" PGL_stop="30333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22518" e_stop="23078"/>
            <exon e_start="26606" e_stop="26908"/>
            <exon e_start="28302" e_stop="28685"/>
            <exon e_start="29772" e_stop="30333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.987"/>
          <exon-intron don_prob="0.826" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="22518" e_stop="23078" e_length="561"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="23079" i_stop="26605" i_length="3527"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26606" e_stop="26908" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.727">
            <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28302" e_stop="28685" e_length="384"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="28686" i_stop="29771" i_length="1086"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="29772" e_stop="30333" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22518" stop="22924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22527" stop="22980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22527" stop="22979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22550" stop="22957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22770" stop="23078"/>
              <exon start="26606" stop="26691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22863" stop="23078"/>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23030" stop="23078"/>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26625" stop="26838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26706" stop="26908"/>
              <exon start="28302" stop="28613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26748" stop="26908"/>
              <exon start="28302" stop="28685"/>
              <exon start="29772" stop="29974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28337" stop="28630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28421" stop="28685"/>
              <exon start="29772" stop="30219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28421" stop="28685"/>
              <exon start="29772" stop="30160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28467" stop="28685"/>
              <exon start="29772" stop="30082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29997" stop="30333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTG : GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG : TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG : GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</gDNA_template>
            <first_frame> S  S  K  T  E  F  P  Q  K  M  V  C  C  T  K  F  T  I  A  F  Q  K  N  P  I  F  F  S  I  F  F  S  I  F  F  Y  L  Y  T  N  M  C  M  C  H  K  N  Q  *  A  I  R  G  V  V  S  I  I  S  L  N  Y  Y  E  I  M  R  I  Y  M  I  *  L  *  P  F  S  N  L  *  L  L  L  P  F  R  F  V  Y  L  *  R  E  T  N  K  W  F  C  F  L  R  F  T  V  E  K  T  R  A  C  F  G  G  H  E  N  Q  G  E  S  F  *  G  Y  L  V  H  L  N  H  P  L  L  P  F  C  *  D  P  F  I  F  C  S  W  F  L  S  L  F  S  F  F  L  L  L  M  K  P  I  R  K  T  Q  L  L  V  A  F  V  E  N  G  M  S  *  S  G  F  Y  V  Q  N  L  I  L  :  D  Q  G  R  Q  E  S  *  K  I  R  F  V  E  D  I  Y  C  C  Q  H  I  V  V  Y  I  D  T  M  A  P  G  G  S  N  Y  Q  D  I  G  D  S  R  S  A  Y  S  D  Y  G  I  A  P  E  S  A  E  F  K  N  S  P  F  R  K  A  A  A  V  I  G  G  K  N  G  V  G  S  N  S  A  V  H  E  L  L  E  C  P  V  C  M  N  P  M  Y  P  P  I  H  Q  :  C  P  N  G  H  T  L  C  V  K  C  K  S  K  V  H  V  C  P  I  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  I  A  E  S  L  E  L  P  C  R  Y  Q  I  Y  G  C  Q  D  I  F  T  Y  H  T  R  L  R  H  E  Q  N  C  R  F  R  P  Y  N  C  P  Y  A  G  S  E  C  A  V  T  G  D  I  Q  Y  L  V  A  H  L  K  D  D  H  K  V  D  M  H  D  G  C  T  F  N  H  R  Y  V  K  S  N  P  Q  E  V  E  N  A  T  W  M  L  T  :  V  F  N  C  F  G  H  Q  F  C  L  H  F  E  A  F  N  L  G  L  A  P  V  Y  M  A  F  L  R  F  M  G  D  D  D  D  A  K  R  F  S  Y  S  L  E  V  G  G  F  G  R  K  L  T  W  Q  G  V  P  R  S  I  R  D  S  H  K  T  V  R  D  S  L  D  G  L  I  I  Q  R  S  M  A  L  F  F  S  G  G  D  R  K  E  L  K  L  K  V  A  G  R  I  W  R  E  P  L  *  T  R  Y  M  H  L  P  S  S  W  G  C  P  E  S  I  V  S  Y  R  *  I  G  W  W  L  N  F  L  *  M  V  L  Y  S  F  W  F  F  G  S  I  V  S  I  V  V  *  L  N  C  G  S  C  I  *  S  C  E  A  F  *  A  F  L  *  P  A  I  *  *  S  I  W  L  L  V  S  F  </first_frame>
            <second_frame>  P  L  R  Q  N  F  H  K  K  W  C  V  V  Q  N  S  Q  *  P  F  K  K  I  Q  S  F  L  V  Y  F  F  Q  F  F  S  I  C  T  Q  T  C  V  C  V  T  K  I  S  K  L  *  G  G  L  Y  Q  L  *  V  *  I  I  M  K  L  *  G  F  T  *  F  D  C  D  P  F  Q  I  F  D  S  C  Y  P  L  D  L  Y  T  C  K  E  K  Q  T  N  G  F  V  F  S  D  L  L  L  K  K  Q  E  P  V  L  V  D  T  K  I  K  E  K  A  F  K  D  I  W  C  I  S  T  T  H  S  Y  P  F  V  K  T  L  S  F  S  V  L  G  F  C  L  C  F  P  F  F  C  C  *  *  S  L  S  G  R  P  N  Y  W  L  L  L  L  R  M  G  *  V  N  L  A  F  T  Y  K  I  L  S  W :   I  R  A  V  K  R  A  R  R  S  D  L  W  R  I  Y  I  V  V  N  T  *  *  F  I  *  I  P  W  L  P  E  A  V  T  T  R  I  L  V  I  P  A  V  H  I  L  T  M  V  L  H  Q  K  V  L  S  S  K  T  P  P  L  E  K  L  Q  L  L  L  V  G  R  M  E  L  D  L  I  V  L  F  M  S  Y  L  N  A  L  F  V  *  I  Q  C  I  H  Q  F  T  S :   V  Q  T  A  T  R  Y  A  *  S  A  S  Q  K  Y  M  C  V  Q  F  A  A  M  S  L  E  T  *  D  V  *  H  W  K  K  L  L  S  H  *  N  C  R  A  D  T  K  F  M  A  V  K  I  Y  S  L  I  I  L  G  F  V  M  S  R  T  A  D  F  D  H  T  I  A  H  M  Q  D  L  N  A  L  L  P  V  I  F  S  T  S  L  H  T  *  K  M  I  T  K  L  I  C  M  M  A  V  P  S  I  I  V  M  S  N  L  I  L  K  K  L  R  M  L  H  G  C  *  R :   F  L  T  V  S  V  T  S  S  A  C  T  L  R  L  S  I  L  D  W  H  R  Y  T  W  H  S  F  V  L  W  V  M  M  M  M  R  K  D  L  A  I  V  L  K  *  V  D  L  A  E  S  *  H  G  R  E  Y  R  G  A  S  V  I  V  I  K  L  S  E  T  V  *  T  G  *  L  F  K  G  A  W  H  S  S  S  L  V  V  T  G  R  S  *  S  *  R  *  L  G  V  F  G  E  S  H  C  K  L  D  I  C  I  F  L  H  R  G  D  A  L  K  V  *  L  V  I  A  K  L  V  G  G  L  I  F  C  K  W  F  Y  T  V  S  G  F  S  D  R  S  Y  R  L  *  F  S  S  T  V  D  H  V  S  K  V  V  R  H  F  K  L  F  Y  D  Q  P  Y  D  N  L  S  G  Y  *  S  L  S </second_frame>
            <third_frame>   L  *  D  R  I  S  T  K  N  G  V  L  Y  K  I  H  N  S  L  S  K  K  S  N  L  F  *  Y  I  F  F  N  F  F  L  F  V  H  K  H  V  Y  V  S  Q  K  S  V  S  Y  K  G  G  C  I  N  Y  K  F  K  L  L  *  N  Y  E  D  L  H  D  L  I  V  T  L  F  K  S  L  T  L  V  T  L  *  I  C  I  L  V  K  R  N  K  Q  M  V  L  F  S  Q  I  Y  C  *  K  N  K  S  L  F  W  W  T  R  K  S  R  R  K  L  L  R  I  F  G  A  S  Q  P  P  T  L  T  L  L  L  R  P  F  H  F  L  F  L  V  F  V  F  V  F  L  F  F  V  V  D  E  A  Y  Q  E  D  P  I  I  G  C  F  C  *  E  W  D  E  L  I  W  L  L  R  T  K  S  Y  L   : G  S  G  P  S  R  E  L  E  D  Q  I  C  G  G  Y  I  L  L  S  T  H  S  S  L  Y  R  Y  H  G  S  R  R  Q  *  L  P  G  Y  W  *  F  P  Q  C  I  F  *  L  W  Y  C  T  R  K  C  *  V  Q  K  L  P  L  *  K  S  C  S  C  Y  W  W  E  E  W  S  W  I  *  *  C  C  S  *  A  T  *  M  P  C  L  Y  E  S  N  V  S  T  N  S  P   : V  S  K  R  P  H  V  M  R  E  V  Q  V  K  S  T  C  V  S  N  L  P  P  *  A  W  K  H  K  M  F  S  T  G  K  N  C  *  V  T  R  I  A  V  P  I  P  N  L  W  L  S  R  Y  I  H  L  S  Y  *  A  S  S  *  A  E  L  Q  I  S  T  I  Q  L  P  I  C  R  I  *  M  R  C  Y  R  *  Y  S  V  P  R  C  T  P  K  R  *  S  Q  S  *  Y  A  *  W  L  Y  L  Q  S  S  L  C  Q  I  *  S  S  R  S  *  E  C  Y  M  D  V  D   : G  F  *  L  F  R  S  P  V  L  P  A  L  *  G  F  Q  S  W  I  G  T  G  I  H  G  I  P  S  F  Y  G  *  *  *  *  C  E  K  I  *  L  *  S  *  S  R  W  I  W  Q  K  V  N  M  A  G  S  T  E  E  H  P  *  *  S  *  N  C  P  R  Q  F  R  R  A  D  Y  S  K  E  H  G  T  L  L  L  W  W  *  Q  E  G  A  E  A  K  G  S  W  A  Y  L  A  R  A  I  V  N  *  I  Y  A  S  S  F  I  V  G  M  P  *  K  Y  S  *  L  S  L  N  W  L  V  A  *  F  F  V  N  G  S  I  Q  F  L  V  F  R  I  D  R  I  D  C  S  L  A  Q  L  W  I  M  Y  L  K  L  *  G  I  L  S  F  S  M  T  S  H  M  I  I  Y  L  V  I  S  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26630" stop="26908"/>
                    <exon start="28302" stop="28685"/>
                    <exon start="29772" stop="30095"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRFVEDIYCCQHIVVYIDTMAPGGSNYQDIGDSRSAYSDYGIAPESAEFKNSPFRKAAAVIGGKNGVGSNSAVHELLECPVCMNPMYPPIHQCPNGHTLCVKCKSKVHVCPICRHELGNIRCLALEKIAESLELPCRYQIYGCQDIFTYHTRLRHEQNCRFRPYNCPYAGSECAVTGDIQYLVAHLKDDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGHQFCLHFEAFNLGLAPVYMAFLRFMGDDDDAKRFSYSLEVGGFGRKLTWQGVPRSIRDSHKTVRDSLDGLIIQRSMALFFSGGDRKELKLKVAGRIWREPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22729" stop="22989"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDCDPFQIFDSCYPLDLYTCKEKQTNGFVFSDLLLKKQEPVLVDTKIKEKAFKDIWCISTTHSYPFVKTLSFSVLGFCLCFPFFCC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22518" e_stop="23060"/>
            <exon e_start="26606" e_stop="26908"/>
            <exon e_start="28302" e_stop="28685"/>
            <exon e_start="29772" e_stop="30333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.987"/>
          <exon-intron don_prob="0.826" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="22518" e_stop="23060" e_length="543"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="23061" i_stop="26605" i_length="3545"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26606" e_stop="26908" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.727">
            <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28302" e_stop="28685" e_length="384"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="28686" i_stop="29771" i_length="1086"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="29772" e_stop="30333" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22518" stop="22924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22527" stop="22980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22527" stop="22979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22550" stop="22957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22833" stop="23060"/>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22954" stop="23060"/>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26625" stop="26838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26706" stop="26908"/>
              <exon start="28302" stop="28613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26748" stop="26908"/>
              <exon start="28302" stop="28685"/>
              <exon start="29772" stop="29974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28337" stop="28630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28421" stop="28685"/>
              <exon start="29772" stop="30219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28421" stop="28685"/>
              <exon start="29772" stop="30160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28467" stop="28685"/>
              <exon start="29772" stop="30082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29997" stop="30333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTAC : GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG : TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG : GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</gDNA_template>
            <first_frame> S  S  K  T  E  F  P  Q  K  M  V  C  C  T  K  F  T  I  A  F  Q  K  N  P  I  F  F  S  I  F  F  S  I  F  F  Y  L  Y  T  N  M  C  M  C  H  K  N  Q  *  A  I  R  G  V  V  S  I  I  S  L  N  Y  Y  E  I  M  R  I  Y  M  I  *  L  *  P  F  S  N  L  *  L  L  L  P  F  R  F  V  Y  L  *  R  E  T  N  K  W  F  C  F  L  R  F  T  V  E  K  T  R  A  C  F  G  G  H  E  N  Q  G  E  S  F  *  G  Y  L  V  H  L  N  H  P  L  L  P  F  C  *  D  P  F  I  F  C  S  W  F  L  S  L  F  S  F  F  L  L  L  M  K  P  I  R  K  T  Q  L  L  V  A  F  V  E  N  G  M  S  *  S  G  F  Y  :  D  Q  G  R  Q  E  S  *  K  I  R  F  V  E  D  I  Y  C  C  Q  H  I  V  V  Y  I  D  T  M  A  P  G  G  S  N  Y  Q  D  I  G  D  S  R  S  A  Y  S  D  Y  G  I  A  P  E  S  A  E  F  K  N  S  P  F  R  K  A  A  A  V  I  G  G  K  N  G  V  G  S  N  S  A  V  H  E  L  L  E  C  P  V  C  M  N  P  M  Y  P  P  I  H  Q  :  C  P  N  G  H  T  L  C  V  K  C  K  S  K  V  H  V  C  P  I  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  I  A  E  S  L  E  L  P  C  R  Y  Q  I  Y  G  C  Q  D  I  F  T  Y  H  T  R  L  R  H  E  Q  N  C  R  F  R  P  Y  N  C  P  Y  A  G  S  E  C  A  V  T  G  D  I  Q  Y  L  V  A  H  L  K  D  D  H  K  V  D  M  H  D  G  C  T  F  N  H  R  Y  V  K  S  N  P  Q  E  V  E  N  A  T  W  M  L  T  :  V  F  N  C  F  G  H  Q  F  C  L  H  F  E  A  F  N  L  G  L  A  P  V  Y  M  A  F  L  R  F  M  G  D  D  D  D  A  K  R  F  S  Y  S  L  E  V  G  G  F  G  R  K  L  T  W  Q  G  V  P  R  S  I  R  D  S  H  K  T  V  R  D  S  L  D  G  L  I  I  Q  R  S  M  A  L  F  F  S  G  G  D  R  K  E  L  K  L  K  V  A  G  R  I  W  R  E  P  L  *  T  R  Y  M  H  L  P  S  S  W  G  C  P  E  S  I  V  S  Y  R  *  I  G  W  W  L  N  F  L  *  M  V  L  Y  S  F  W  F  F  G  S  I  V  S  I  V  V  *  L  N  C  G  S  C  I  *  S  C  E  A  F  *  A  F  L  *  P  A  I  *  *  S  I  W  L  L  V  S  F  </first_frame>
            <second_frame>  P  L  R  Q  N  F  H  K  K  W  C  V  V  Q  N  S  Q  *  P  F  K  K  I  Q  S  F  L  V  Y  F  F  Q  F  F  S  I  C  T  Q  T  C  V  C  V  T  K  I  S  K  L  *  G  G  L  Y  Q  L  *  V  *  I  I  M  K  L  *  G  F  T  *  F  D  C  D  P  F  Q  I  F  D  S  C  Y  P  L  D  L  Y  T  C  K  E  K  Q  T  N  G  F  V  F  S  D  L  L  L  K  K  Q  E  P  V  L  V  D  T  K  I  K  E  K  A  F  K  D  I  W  C  I  S  T  T  H  S  Y  P  F  V  K  T  L  S  F  S  V  L  G  F  C  L  C  F  P  F  F  C  C  *  *  S  L  S  G  R  P  N  Y  W  L  L  L  L  R  M  G  *  V  N  L  A  F  T :   I  R  A  V  K  R  A  R  R  S  D  L  W  R  I  Y  I  V  V  N  T  *  *  F  I  *  I  P  W  L  P  E  A  V  T  T  R  I  L  V  I  P  A  V  H  I  L  T  M  V  L  H  Q  K  V  L  S  S  K  T  P  P  L  E  K  L  Q  L  L  L  V  G  R  M  E  L  D  L  I  V  L  F  M  S  Y  L  N  A  L  F  V  *  I  Q  C  I  H  Q  F  T  S :   V  Q  T  A  T  R  Y  A  *  S  A  S  Q  K  Y  M  C  V  Q  F  A  A  M  S  L  E  T  *  D  V  *  H  W  K  K  L  L  S  H  *  N  C  R  A  D  T  K  F  M  A  V  K  I  Y  S  L  I  I  L  G  F  V  M  S  R  T  A  D  F  D  H  T  I  A  H  M  Q  D  L  N  A  L  L  P  V  I  F  S  T  S  L  H  T  *  K  M  I  T  K  L  I  C  M  M  A  V  P  S  I  I  V  M  S  N  L  I  L  K  K  L  R  M  L  H  G  C  *  R :   F  L  T  V  S  V  T  S  S  A  C  T  L  R  L  S  I  L  D  W  H  R  Y  T  W  H  S  F  V  L  W  V  M  M  M  M  R  K  D  L  A  I  V  L  K  *  V  D  L  A  E  S  *  H  G  R  E  Y  R  G  A  S  V  I  V  I  K  L  S  E  T  V  *  T  G  *  L  F  K  G  A  W  H  S  S  S  L  V  V  T  G  R  S  *  S  *  R  *  L  G  V  F  G  E  S  H  C  K  L  D  I  C  I  F  L  H  R  G  D  A  L  K  V  *  L  V  I  A  K  L  V  G  G  L  I  F  C  K  W  F  Y  T  V  S  G  F  S  D  R  S  Y  R  L  *  F  S  S  T  V  D  H  V  S  K  V  V  R  H  F  K  L  F  Y  D  Q  P  Y  D  N  L  S  G  Y  *  S  L  S </second_frame>
            <third_frame>   L  *  D  R  I  S  T  K  N  G  V  L  Y  K  I  H  N  S  L  S  K  K  S  N  L  F  *  Y  I  F  F  N  F  F  L  F  V  H  K  H  V  Y  V  S  Q  K  S  V  S  Y  K  G  G  C  I  N  Y  K  F  K  L  L  *  N  Y  E  D  L  H  D  L  I  V  T  L  F  K  S  L  T  L  V  T  L  *  I  C  I  L  V  K  R  N  K  Q  M  V  L  F  S  Q  I  Y  C  *  K  N  K  S  L  F  W  W  T  R  K  S  R  R  K  L  L  R  I  F  G  A  S  Q  P  P  T  L  T  L  L  L  R  P  F  H  F  L  F  L  V  F  V  F  V  F  L  F  F  V  V  D  E  A  Y  Q  E  D  P  I  I  G  C  F  C  *  E  W  D  E  L  I  W  L  L   : R  S  G  P  S  R  E  L  E  D  Q  I  C  G  G  Y  I  L  L  S  T  H  S  S  L  Y  R  Y  H  G  S  R  R  Q  *  L  P  G  Y  W  *  F  P  Q  C  I  F  *  L  W  Y  C  T  R  K  C  *  V  Q  K  L  P  L  *  K  S  C  S  C  Y  W  W  E  E  W  S  W  I  *  *  C  C  S  *  A  T  *  M  P  C  L  Y  E  S  N  V  S  T  N  S  P   : V  S  K  R  P  H  V  M  R  E  V  Q  V  K  S  T  C  V  S  N  L  P  P  *  A  W  K  H  K  M  F  S  T  G  K  N  C  *  V  T  R  I  A  V  P  I  P  N  L  W  L  S  R  Y  I  H  L  S  Y  *  A  S  S  *  A  E  L  Q  I  S  T  I  Q  L  P  I  C  R  I  *  M  R  C  Y  R  *  Y  S  V  P  R  C  T  P  K  R  *  S  Q  S  *  Y  A  *  W  L  Y  L  Q  S  S  L  C  Q  I  *  S  S  R  S  *  E  C  Y  M  D  V  D   : G  F  *  L  F  R  S  P  V  L  P  A  L  *  G  F  Q  S  W  I  G  T  G  I  H  G  I  P  S  F  Y  G  *  *  *  *  C  E  K  I  *  L  *  S  *  S  R  W  I  W  Q  K  V  N  M  A  G  S  T  E  E  H  P  *  *  S  *  N  C  P  R  Q  F  R  R  A  D  Y  S  K  E  H  G  T  L  L  L  W  W  *  Q  E  G  A  E  A  K  G  S  W  A  Y  L  A  R  A  I  V  N  *  I  Y  A  S  S  F  I  V  G  M  P  *  K  Y  S  *  L  S  L  N  W  L  V  A  *  F  F  V  N  G  S  I  Q  F  L  V  F  R  I  D  R  I  D  C  S  L  A  Q  L  W  I  M  Y  L  K  L  *  G  I  L  S  F  S  M  T  S  H  M  I  I  Y  L  V  I  S  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26630" stop="26908"/>
                    <exon start="28302" stop="28685"/>
                    <exon start="29772" stop="30095"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRFVEDIYCCQHIVVYIDTMAPGGSNYQDIGDSRSAYSDYGIAPESAEFKNSPFRKAAAVIGGKNGVGSNSAVHELLECPVCMNPMYPPIHQCPNGHTLCVKCKSKVHVCPICRHELGNIRCLALEKIAESLELPCRYQIYGCQDIFTYHTRLRHEQNCRFRPYNCPYAGSECAVTGDIQYLVAHLKDDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGHQFCLHFEAFNLGLAPVYMAFLRFMGDDDDAKRFSYSLEVGGFGRKLTWQGVPRSIRDSHKTVRDSLDGLIIQRSMALFFSGGDRKELKLKVAGRIWREPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22729" stop="22989"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDCDPFQIFDSCYPLDLYTCKEKQTNGFVFSDLLLKKQEPVLVDTKIKEKAFKDIWCISTTHSYPFVKTLSFSVLGFCLCFPFFCC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22518" e_stop="22926"/>
            <exon e_start="26606" e_stop="26908"/>
            <exon e_start="28302" e_stop="28685"/>
            <exon e_start="29772" e_stop="30333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.605" acc_prob="0.992" e_score="0.995"/>
          <exon-intron don_prob="0.826" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="22518" e_stop="22926" e_length="409"/>
          </exon>
          <intron i_serial="1" don_prob="0.605" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22927" i_stop="26605" i_length="3679"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26606" e_stop="26908" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.727">
            <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28302" e_stop="28685" e_length="384"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="28686" i_stop="29771" i_length="1086"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="29772" e_stop="30333" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22518" stop="22924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22835" stop="22926"/>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26625" stop="26838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26706" stop="26908"/>
              <exon start="28302" stop="28613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26748" stop="26908"/>
              <exon start="28302" stop="28685"/>
              <exon start="29772" stop="29974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28337" stop="28630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28421" stop="28685"/>
              <exon start="29772" stop="30219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28421" stop="28685"/>
              <exon start="29772" stop="30160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28467" stop="28685"/>
              <exon start="29772" stop="30082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29997" stop="30333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTT : GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG : TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG : GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</gDNA_template>
            <first_frame> S  S  K  T  E  F  P  Q  K  M  V  C  C  T  K  F  T  I  A  F  Q  K  N  P  I  F  F  S  I  F  F  S  I  F  F  Y  L  Y  T  N  M  C  M  C  H  K  N  Q  *  A  I  R  G  V  V  S  I  I  S  L  N  Y  Y  E  I  M  R  I  Y  M  I  *  L  *  P  F  S  N  L  *  L  L  L  P  F  R  F  V  Y  L  *  R  E  T  N  K  W  F  C  F  L  R  F  T  V  E  K  T  R  A  C  F  G  G  H  E  N  Q  G  E  S  F  *  G  Y  L  V  H  L  N  H  P  L  L  P  F   : *  S  G  P  S  R  E  L  E  D  Q  I  C  G  G  Y  I  L  L  S  T  H  S  S  L  Y  R  Y  H  G  S  R  R  Q  *  L  P  G  Y  W  *  F  P  Q  C  I  F  *  L  W  Y  C  T  R  K  C  *  V  Q  K  L  P  L  *  K  S  C  S  C  Y  W  W  E  E  W  S  W  I  *  *  C  C  S  *  A  T  *  M  P  C  L  Y  E  S  N  V  S  T  N  S  P   : V  S  K  R  P  H  V  M  R  E  V  Q  V  K  S  T  C  V  S  N  L  P  P  *  A  W  K  H  K  M  F  S  T  G  K  N  C  *  V  T  R  I  A  V  P  I  P  N  L  W  L  S  R  Y  I  H  L  S  Y  *  A  S  S  *  A  E  L  Q  I  S  T  I  Q  L  P  I  C  R  I  *  M  R  C  Y  R  *  Y  S  V  P  R  C  T  P  K  R  *  S  Q  S  *  Y  A  *  W  L  Y  L  Q  S  S  L  C  Q  I  *  S  S  R  S  *  E  C  Y  M  D  V  D   : G  F  *  L  F  R  S  P  V  L  P  A  L  *  G  F  Q  S  W  I  G  T  G  I  H  G  I  P  S  F  Y  G  *  *  *  *  C  E  K  I  *  L  *  S  *  S  R  W  I  W  Q  K  V  N  M  A  G  S  T  E  E  H  P  *  *  S  *  N  C  P  R  Q  F  R  R  A  D  Y  S  K  E  H  G  T  L  L  L  W  W  *  Q  E  G  A  E  A  K  G  S  W  A  Y  L  A  R  A  I  V  N  *  I  Y  A  S  S  F  I  V  G  M  P  *  K  Y  S  *  L  S  L  N  W  L  V  A  *  F  F  V  N  G  S  I  Q  F  L  V  F  R  I  D  R  I  D  C  S  L  A  Q  L  W  I  M  Y  L  K  L  *  G  I  L  S  F  S  M  T  S  H  M  I  I  Y  L  V  I  S  L  F   </first_frame>
            <second_frame>  P  L  R  Q  N  F  H  K  K  W  C  V  V  Q  N  S  Q  *  P  F  K  K  I  Q  S  F  L  V  Y  F  F  Q  F  F  S  I  C  T  Q  T  C  V  C  V  T  K  I  S  K  L  *  G  G  L  Y  Q  L  *  V  *  I  I  M  K  L  *  G  F  T  *  F  D  C  D  P  F  Q  I  F  D  S  C  Y  P  L  D  L  Y  T  C  K  E  K  Q  T  N  G  F  V  F  S  D  L  L  L  K  K  Q  E  P  V  L  V  D  T  K  I  K  E  K  A  F  K  D  I  W  C  I  S  T  T  H  S  Y  P  F  :  D  Q  G  R  Q  E  S  *  K  I  R  F  V  E  D  I  Y  C  C  Q  H  I  V  V  Y  I  D  T  M  A  P  G  G  S  N  Y  Q  D  I  G  D  S  R  S  A  Y  S  D  Y  G  I  A  P  E  S  A  E  F  K  N  S  P  F  R  K  A  A  A  V  I  G  G  K  N  G  V  G  S  N  S  A  V  H  E  L  L  E  C  P  V  C  M  N  P  M  Y  P  P  I  H  Q  :  C  P  N  G  H  T  L  C  V  K  C  K  S  K  V  H  V  C  P  I  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  I  A  E  S  L  E  L  P  C  R  Y  Q  I  Y  G  C  Q  D  I  F  T  Y  H  T  R  L  R  H  E  Q  N  C  R  F  R  P  Y  N  C  P  Y  A  G  S  E  C  A  V  T  G  D  I  Q  Y  L  V  A  H  L  K  D  D  H  K  V  D  M  H  D  G  C  T  F  N  H  R  Y  V  K  S  N  P  Q  E  V  E  N  A  T  W  M  L  T  :  V  F  N  C  F  G  H  Q  F  C  L  H  F  E  A  F  N  L  G  L  A  P  V  Y  M  A  F  L  R  F  M  G  D  D  D  D  A  K  R  F  S  Y  S  L  E  V  G  G  F  G  R  K  L  T  W  Q  G  V  P  R  S  I  R  D  S  H  K  T  V  R  D  S  L  D  G  L  I  I  Q  R  S  M  A  L  F  F  S  G  G  D  R  K  E  L  K  L  K  V  A  G  R  I  W  R  E  P  L  *  T  R  Y  M  H  L  P  S  S  W  G  C  P  E  S  I  V  S  Y  R  *  I  G  W  W  L  N  F  L  *  M  V  L  Y  S  F  W  F  F  G  S  I  V  S  I  V  V  *  L  N  C  G  S  C  I  *  S  C  E  A  F  *  A  F  L  *  P  A  I  *  *  S  I  W  L  L  V  S  F  </second_frame>
            <third_frame>   L  *  D  R  I  S  T  K  N  G  V  L  Y  K  I  H  N  S  L  S  K  K  S  N  L  F  *  Y  I  F  F  N  F  F  L  F  V  H  K  H  V  Y  V  S  Q  K  S  V  S  Y  K  G  G  C  I  N  Y  K  F  K  L  L  *  N  Y  E  D  L  H  D  L  I  V  T  L  F  K  S  L  T  L  V  T  L  *  I  C  I  L  V  K  R  N  K  Q  M  V  L  F  S  Q  I  Y  C  *  K  N  K  S  L  F  W  W  T  R  K  S  R  R  K  L  L  R  I  F  G  A  S  Q  P  P  T  L  T  L  L :   I  R  A  V  K  R  A  R  R  S  D  L  W  R  I  Y  I  V  V  N  T  *  *  F  I  *  I  P  W  L  P  E  A  V  T  T  R  I  L  V  I  P  A  V  H  I  L  T  M  V  L  H  Q  K  V  L  S  S  K  T  P  P  L  E  K  L  Q  L  L  L  V  G  R  M  E  L  D  L  I  V  L  F  M  S  Y  L  N  A  L  F  V  *  I  Q  C  I  H  Q  F  T  S :   V  Q  T  A  T  R  Y  A  *  S  A  S  Q  K  Y  M  C  V  Q  F  A  A  M  S  L  E  T  *  D  V  *  H  W  K  K  L  L  S  H  *  N  C  R  A  D  T  K  F  M  A  V  K  I  Y  S  L  I  I  L  G  F  V  M  S  R  T  A  D  F  D  H  T  I  A  H  M  Q  D  L  N  A  L  L  P  V  I  F  S  T  S  L  H  T  *  K  M  I  T  K  L  I  C  M  M  A  V  P  S  I  I  V  M  S  N  L  I  L  K  K  L  R  M  L  H  G  C  *  R :   F  L  T  V  S  V  T  S  S  A  C  T  L  R  L  S  I  L  D  W  H  R  Y  T  W  H  S  F  V  L  W  V  M  M  M  M  R  K  D  L  A  I  V  L  K  *  V  D  L  A  E  S  *  H  G  R  E  Y  R  G  A  S  V  I  V  I  K  L  S  E  T  V  *  T  G  *  L  F  K  G  A  W  H  S  S  S  L  V  V  T  G  R  S  *  S  *  R  *  L  G  V  F  G  E  S  H  C  K  L  D  I  C  I  F  L  H  R  G  D  A  L  K  V  *  L  V  I  A  K  L  V  G  G  L  I  F  C  K  W  F  Y  T  V  S  G  F  S  D  R  S  Y  R  L  *  F  S  S  T  V  D  H  V  S  K  V  V  R  H  F  K  L  F  Y  D  Q  P  Y  D  N  L  S  G  Y  *  S  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26630" stop="26908"/>
                    <exon start="28302" stop="28685"/>
                    <exon start="29772" stop="30095"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRFVEDIYCCQHIVVYIDTMAPGGSNYQDIGDSRSAYSDYGIAPESAEFKNSPFRKAAAVIGGKNGVGSNSAVHELLECPVCMNPMYPPIHQCPNGHTLCVKCKSKVHVCPICRHELGNIRCLALEKIAESLELPCRYQIYGCQDIFTYHTRLRHEQNCRFRPYNCPYAGSECAVTGDIQYLVAHLKDDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGHQFCLHFEAFNLGLAPVYMAFLRFMGDDDDAKRFSYSLEVGGFGRKLTWQGVPRSIRDSHKTVRDSLDGLIIQRSMALFFSGGDRKELKLKVAGRIWREPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22729" stop="22926"/>
                    <exon start="26606" stop="26629"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDCDPFQIFDSCYPLDLYTCKEKQTNGFVFSDLLLKKQEPVLVDTKIKEKAFKDIWCISTTHSYPFDQGRQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="25634" e_stop="25667"/>
            <exon e_start="26606" e_stop="26908"/>
            <exon e_start="28302" e_stop="28685"/>
            <exon e_start="29772" e_stop="30333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25634" e_stop="25667" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.992">
            <gDNA_intron_boundary i_start="25668" i_stop="26605" i_length="938"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26606" e_stop="26908" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.727">
            <gDNA_intron_boundary i_start="26909" i_stop="28301" i_length="1393"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28302" e_stop="28685" e_length="384"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="28686" i_stop="29771" i_length="1086"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="29772" e_stop="30333" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25634" stop="25667"/>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26606" stop="26908"/>
              <exon start="28302" stop="28613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26625" stop="26838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26706" stop="26908"/>
              <exon start="28302" stop="28613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26748" stop="26908"/>
              <exon start="28302" stop="28685"/>
              <exon start="29772" stop="29974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28337" stop="28630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28421" stop="28685"/>
              <exon start="29772" stop="30219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28421" stop="28685"/>
              <exon start="29772" stop="30160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28467" stop="28685"/>
              <exon start="29772" stop="30082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29997" stop="30333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAATCCATACCATGAAACTAGCTGCAGATGAG : GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG : TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG : GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</gDNA_template>
            <first_frame> V  N  P  Y  H  E  T  S  C  R  *   : G  S  G  P  S  R  E  L  E  D  Q  I  C  G  G  Y  I  L  L  S  T  H  S  S  L  Y  R  Y  H  G  S  R  R  Q  *  L  P  G  Y  W  *  F  P  Q  C  I  F  *  L  W  Y  C  T  R  K  C  *  V  Q  K  L  P  L  *  K  S  C  S  C  Y  W  W  E  E  W  S  W  I  *  *  C  C  S  *  A  T  *  M  P  C  L  Y  E  S  N  V  S  T  N  S  P   : V  S  K  R  P  H  V  M  R  E  V  Q  V  K  S  T  C  V  S  N  L  P  P  *  A  W  K  H  K  M  F  S  T  G  K  N  C  *  V  T  R  I  A  V  P  I  P  N  L  W  L  S  R  Y  I  H  L  S  Y  *  A  S  S  *  A  E  L  Q  I  S  T  I  Q  L  P  I  C  R  I  *  M  R  C  Y  R  *  Y  S  V  P  R  C  T  P  K  R  *  S  Q  S  *  Y  A  *  W  L  Y  L  Q  S  S  L  C  Q  I  *  S  S  R  S  *  E  C  Y  M  D  V  D   : G  F  *  L  F  R  S  P  V  L  P  A  L  *  G  F  Q  S  W  I  G  T  G  I  H  G  I  P  S  F  Y  G  *  *  *  *  C  E  K  I  *  L  *  S  *  S  R  W  I  W  Q  K  V  N  M  A  G  S  T  E  E  H  P  *  *  S  *  N  C  P  R  Q  F  R  R  A  D  Y  S  K  E  H  G  T  L  L  L  W  W  *  Q  E  G  A  E  A  K  G  S  W  A  Y  L  A  R  A  I  V  N  *  I  Y  A  S  S  F  I  V  G  M  P  *  K  Y  S  *  L  S  L  N  W  L  V  A  *  F  F  V  N  G  S  I  Q  F  L  V  F  R  I  D  R  I  D  C  S  L  A  Q  L  W  I  M  Y  L  K  L  *  G  I  L  S  F  S  M  T  S  H  M  I  I  Y  L  V  I  S  L  F   </first_frame>
            <second_frame>  S  I  H  T  M  K  L  A  A  D  E  :  D  Q  G  R  Q  E  S  *  K  I  R  F  V  E  D  I  Y  C  C  Q  H  I  V  V  Y  I  D  T  M  A  P  G  G  S  N  Y  Q  D  I  G  D  S  R  S  A  Y  S  D  Y  G  I  A  P  E  S  A  E  F  K  N  S  P  F  R  K  A  A  A  V  I  G  G  K  N  G  V  G  S  N  S  A  V  H  E  L  L  E  C  P  V  C  M  N  P  M  Y  P  P  I  H  Q  :  C  P  N  G  H  T  L  C  V  K  C  K  S  K  V  H  V  C  P  I  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  I  A  E  S  L  E  L  P  C  R  Y  Q  I  Y  G  C  Q  D  I  F  T  Y  H  T  R  L  R  H  E  Q  N  C  R  F  R  P  Y  N  C  P  Y  A  G  S  E  C  A  V  T  G  D  I  Q  Y  L  V  A  H  L  K  D  D  H  K  V  D  M  H  D  G  C  T  F  N  H  R  Y  V  K  S  N  P  Q  E  V  E  N  A  T  W  M  L  T  :  V  F  N  C  F  G  H  Q  F  C  L  H  F  E  A  F  N  L  G  L  A  P  V  Y  M  A  F  L  R  F  M  G  D  D  D  D  A  K  R  F  S  Y  S  L  E  V  G  G  F  G  R  K  L  T  W  Q  G  V  P  R  S  I  R  D  S  H  K  T  V  R  D  S  L  D  G  L  I  I  Q  R  S  M  A  L  F  F  S  G  G  D  R  K  E  L  K  L  K  V  A  G  R  I  W  R  E  P  L  *  T  R  Y  M  H  L  P  S  S  W  G  C  P  E  S  I  V  S  Y  R  *  I  G  W  W  L  N  F  L  *  M  V  L  Y  S  F  W  F  F  G  S  I  V  S  I  V  V  *  L  N  C  G  S  C  I  *  S  C  E  A  F  *  A  F  L  *  P  A  I  *  *  S  I  W  L  L  V  S  F  </second_frame>
            <third_frame>   Q  S  I  P  *  N  *  L  Q  M  R :   I  R  A  V  K  R  A  R  R  S  D  L  W  R  I  Y  I  V  V  N  T  *  *  F  I  *  I  P  W  L  P  E  A  V  T  T  R  I  L  V  I  P  A  V  H  I  L  T  M  V  L  H  Q  K  V  L  S  S  K  T  P  P  L  E  K  L  Q  L  L  L  V  G  R  M  E  L  D  L  I  V  L  F  M  S  Y  L  N  A  L  F  V  *  I  Q  C  I  H  Q  F  T  S :   V  Q  T  A  T  R  Y  A  *  S  A  S  Q  K  Y  M  C  V  Q  F  A  A  M  S  L  E  T  *  D  V  *  H  W  K  K  L  L  S  H  *  N  C  R  A  D  T  K  F  M  A  V  K  I  Y  S  L  I  I  L  G  F  V  M  S  R  T  A  D  F  D  H  T  I  A  H  M  Q  D  L  N  A  L  L  P  V  I  F  S  T  S  L  H  T  *  K  M  I  T  K  L  I  C  M  M  A  V  P  S  I  I  V  M  S  N  L  I  L  K  K  L  R  M  L  H  G  C  *  R :   F  L  T  V  S  V  T  S  S  A  C  T  L  R  L  S  I  L  D  W  H  R  Y  T  W  H  S  F  V  L  W  V  M  M  M  M  R  K  D  L  A  I  V  L  K  *  V  D  L  A  E  S  *  H  G  R  E  Y  R  G  A  S  V  I  V  I  K  L  S  E  T  V  *  T  G  *  L  F  K  G  A  W  H  S  S  S  L  V  V  T  G  R  S  *  S  *  R  *  L  G  V  F  G  E  S  H  C  K  L  D  I  C  I  F  L  H  R  G  D  A  L  K  V  *  L  V  I  A  K  L  V  G  G  L  I  F  C  K  W  F  Y  T  V  S  G  F  S  D  R  S  Y  R  L  *  F  S  S  T  V  D  H  V  S  K  V  V  R  H  F  K  L  F  Y  D  Q  P  Y  D  N  L  S  G  Y  *  S  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26630" stop="26908"/>
                    <exon start="28302" stop="28685"/>
                    <exon start="29772" stop="30095"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRFVEDIYCCQHIVVYIDTMAPGGSNYQDIGDSRSAYSDYGIAPESAEFKNSPFRKAAAVIGGKNGVGSNSAVHELLECPVCMNPMYPPIHQCPNGHTLCVKCKSKVHVCPICRHELGNIRCLALEKIAESLELPCRYQIYGCQDIFTYHTRLRHEQNCRFRPYNCPYAGSECAVTGDIQYLVAHLKDDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGHQFCLHFEAFNLGLAPVYMAFLRFMGDDDDAKRFSYSLEVGGFGRKLTWQGVPRSIRDSHKTVRDSLDGLIIQRSMALFFSGGDRKELKLKVAGRIWREPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="29408" e_stop="29885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="29408" e_stop="29885" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29408" stop="29885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATTCAAAAAATTTCTCTACTTTCTTAAACTCCGAGACACATCAAAACCAGGCAAATAATTGAAACGGAGCAGTTTTCTTCATCCAATTGTAGAAGTGTTGTATAACATTTTGTTATTCATCATCGTCTTTGTACTTTAGCTATTGTTAGGAGGTTCATACTTCTATTGCCAGCTTTATCTTTTTTGGTTGAAAGTGAAGGCAGACAAGAGCATGCATAATTTTGTTATTCGCCTACCAATTAATTTTCCATCTAGCATTTAGCCATACGATAACCGAGCCTTTTTCTTTGTGGATTTTCACATTGTTCCATCTGCAATGATGTGCTGTTGGTAATAGTTTGTTTGCTGATTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAA</gDNA_template>
            <first_frame> K  I  Q  K  I  S  L  L  S  *  T  P  R  H  I  K  T  R  Q  I  I  E  T  E  Q  F  S  S  S  N  C  R  S  V  V  *  H  F  V  I  H  H  R  L  C  T  L  A  I  V  R  R  F  I  L  L  L  P  A  L  S  F  L  V  E  S  E  G  R  Q  E  H  A  *  F  C  Y  S  P  T  N  *  F  S  I  *  H  L  A  I  R  *  P  S  L  F  L  C  G  F  S  H  C  S  I  C  N  D  V  L  L  V  I  V  C  L  L  I  P  G  I  G  F  *  L  F  R  S  P  V  L  P  A  L  *  G  F  Q  S  W  I  G  T  G  I  H  G  I  P  S  F  Y  G  *  *  *  *  C  E  </first_frame>
            <second_frame>  R  F  K  K  F  L  Y  F  L  K  L  R  D  T  S  K  P  G  K  *  L  K  R  S  S  F  L  H  P  I  V  E  V  L  Y  N  I  L  L  F  I  I  V  F  V  L  *  L  L  L  G  G  S  Y  F  Y  C  Q  L  Y  L  F  W  L  K  V  K  A  D  K  S  M  H  N  F  V  I  R  L  P  I  N  F  P  S  S  I  *  P  Y  D  N  R  A  F  F  F  V  D  F  H  I  V  P  S  A  M  M  C  C  W  *  *  F  V  C  *  F  L  E  *  V  F  N  C  F  G  H  Q  F  C  L  H  F  E  A  F  N  L  G  L  A  P  V  Y  M  A  F  L  R  F  M  G  D  D  D  D  A  K </second_frame>
            <third_frame>   D  S  K  N  F  S  T  F  L  N  S  E  T  H  Q  N  Q  A  N  N  *  N  G  A  V  F  F  I  Q  L  *  K  C  C  I  T  F  C  Y  S  S  S  S  L  Y  F  S  Y  C  *  E  V  H  T  S  I  A  S  F  I  F  F  G  *  K  *  R  Q  T  R  A  C  I  I  L  L  F  A  Y  Q  L  I  F  H  L  A  F  S  H  T  I  T  E  P  F  S  L  W  I  F  T  L  F  H  L  Q  *  C  A  V  G  N  S  L  F  A  D  S  W  N  R  F  L  T  V  S  V  T  S  S  A  C  T  L  R  L  S  I  L  D  W  H  R  Y  T  W  H  S  F  V  L  W  V  M  M  M  M  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0124N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="30305" PGL_stop="29879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30305" e_stop="29879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="30305" e_stop="29879" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30305" stop="29879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435119" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATATGGCTGGTCATAGAAAAGCTTAAAATGCCTCACAACTTTAGATACATGATCCACAGTTGAGCTAAACTACAATCGATACGATCGATCCGAAAAACCAGAAACTGTATAGAACCATTTACAAAAAATTAAGCCACCAACCAATTTAGCGATAACTAACTATACTTTCAGGGCATCCCCACGATGAAGGAAGATGCATATATCTAGTTTACAATGGCTCTCGCCAAATACGCCCAGCTACCTTTAGCTTCAGCTCCTTCCTGTCACCACCAGAGAAGAAGAGTGCCATGCTCCTTTGAATAATCAGCCCGTCTAAACTGTCTCGGACAGTTTTATGACTATCACGGATGCTCCTCGGTACTCCCTGCCATGTTAACTTTCTGCCAAATCCACCTACTTCAAGACTATAGCTAAATCTTTTCGCA</gDNA_template>
            <first_frame> S  Y  G  W  S  *  K  S  L  K  C  L  T  T  L  D  T  *  S  T  V  E  L  N  Y  N  R  Y  D  R  S  E  K  P  E  T  V  *  N  H  L  Q  K  I  K  P  P  T  N  L  A  I  T  N  Y  T  F  R  A  S  P  R  *  R  K  M  H  I  S  S  L  Q  W  L  S  P  N  T  P  S  Y  L  *  L  Q  L  L  P  V  T  T  R  E  E  E  C  H  A  P  L  N  N  Q  P  V  *  T  V  S  D  S  F  M  T  I  T  D  A  P  R  Y  S  L  P  C  *  L  S  A  K  S  T  Y  F  K  T  I  A  K  S  F  R  </first_frame>
            <second_frame>  H  M  A  G  H  R  K  A  *  N  A  S  Q  L  *  I  H  D  P  Q  L  S  *  T  T  I  D  T  I  D  P  K  N  Q  K  L  Y  R  T  I  Y  K  K  L  S  H  Q  P  I  *  R  *  L  T  I  L  S  G  H  P  H  D  E  G  R  C  I  Y  L  V  Y  N  G  S  R  Q  I  R  P  A  T  F  S  F  S  S  F  L  S  P  P  E  K  K  S  A  M  L  L  *  I  I  S  P  S  K  L  S  R  T  V  L  *  L  S  R  M  L  L  G  T  P  C  H  V  N  F  L  P  N  P  P  T  S  R  L  *  L  N  L  F  A </second_frame>
            <third_frame>   I  W  L  V  I  E  K  L  K  M  P  H  N  F  R  Y  M  I  H  S  *  A  K  L  Q  S  I  R  S  I  R  K  T  R  N  C  I  E  P  F  T  K  N  *  A  T  N  Q  F  S  D  N  *  L  Y  F  Q  G  I  P  T  M  K  E  D  A  Y  I  *  F  T  M  A  L  A  K  Y  A  Q  L  P  L  A  S  A  P  S  C  H  H  Q  R  R  R  V  P  C  S  F  E  *  S  A  R  L  N  C  L  G  Q  F  Y  D  Y  H  G  C  S  S  V  L  P  A  M  L  T  F  C  Q  I  H  L  L  Q  D  Y  S  *  I  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0124N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="35989" PGL_stop="36717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35989" e_stop="36717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="35989" e_stop="36717" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35989" stop="36717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGATTCAAGTTCTGTTGATATTGCTGCTTCTGGTCTTGGTTGGTTTGCCATTGGACTAAAGGGAGAGGCTAAATTAGGTGTCTGGACATATGATGGTGTTGATGTCATTGTTCGTAACGCGTTACTCCCAAACAGATCCTATGATTTCGAAGTTGCTGGCTTTACTGTTTCAAAAATTGTTTCCACTGCTGACCGCTCCTCAAATAAGCAGCGCCGTGATGATAAGAAGAGAAAATTGAGCGACTCTACTGCAGAAAAACCTGCAAAACCATCAACTGTCGATGTGGCTTCAACAACTTGCTAATTGTGGAAGCATTTACAATCTGGCGATGTACTTTGCTTGTCCCAGTACTGGAATGTAGATCGAACGTGGGAATAATCGTCTATTACCTCTCCGGGACCTGGATAAGTTGATGCCTTTCTACCATGATTTTTGCCCCCTGCAAAGAAAAACGCGGCATCAAAACCAGAGAAATGCAGGAAGTAAAGGCATTCAGGGTTCATGCACTATTGCATATCAAGACCCCTTCTGCTACGATGGCGGTATCCCTTTTACGCTGTTCTTACCTTCGTTATACACAAGTTTTGGCGTCTATCGATGCCAAAATGTCTCATTTCATAGATGAAGCTTCTTTATACACAAATTTTGGTGTTCATCGATGCCAAAATGTCTCGATACGTAAATGAAGCTAAATGCTGAAGGATTTATGTATGCAACACAAACCGA</gDNA_template>
            <first_frame> W  D  S  S  S  V  D  I  A  A  S  G  L  G  W  F  A  I  G  L  K  G  E  A  K  L  G  V  W  T  Y  D  G  V  D  V  I  V  R  N  A  L  L  P  N  R  S  Y  D  F  E  V  A  G  F  T  V  S  K  I  V  S  T  A  D  R  S  S  N  K  Q  R  R  D  D  K  K  R  K  L  S  D  S  T  A  E  K  P  A  K  P  S  T  V  D  V  A  S  T  T  C  *  L  W  K  H  L  Q  S  G  D  V  L  C  L  S  Q  Y  W  N  V  D  R  T  W  E  *  S  S  I  T  S  P  G  P  G  *  V  D  A  F  L  P  *  F  L  P  P  A  K  K  N  A  A  S  K  P  E  K  C  R  K  *  R  H  S  G  F  M  H  Y  C  I  S  R  P  L  L  L  R  W  R  Y  P  F  Y  A  V  L  T  F  V  I  H  K  F  W  R  L  S  M  P  K  C  L  I  S  *  M  K  L  L  Y  T  Q  I  L  V  F  I  D  A  K  M  S  R  Y  V  N  E  A  K  C  *  R  I  Y  V  C  N  T  N  R </first_frame>
            <second_frame>  G  I  Q  V  L  L  I  L  L  L  L  V  L  V  G  L  P  L  D  *  R  E  R  L  N  *  V  S  G  H  M  M  V  L  M  S  L  F  V  T  R  Y  S  Q  T  D  P  M  I  S  K  L  L  A  L  L  F  Q  K  L  F  P  L  L  T  A  P  Q  I  S  S  A  V  M  I  R  R  E  N  *  A  T  L  L  Q  K  N  L  Q  N  H  Q  L  S  M  W  L  Q  Q  L  A  N  C  G  S  I  Y  N  L  A  M  Y  F  A  C  P  S  T  G  M  *  I  E  R  G  N  N  R  L  L  P  L  R  D  L  D  K  L  M  P  F  Y  H  D  F  C  P  L  Q  R  K  T  R  H  Q  N  Q  R  N  A  G  S  K  G  I  Q  G  S  C  T  I  A  Y  Q  D  P  F  C  Y  D  G  G  I  P  F  T  L  F  L  P  S  L  Y  T  S  F  G  V  Y  R  C  Q  N  V  S  F  H  R  *  S  F  F  I  H  K  F  W  C  S  S  M  P  K  C  L  D  T  *  M  K  L  N  A  E  G  F  M  Y  A  T  Q  T   </second_frame>
            <third_frame>   G  F  K  F  C  *  Y  C  C  F  W  S  W  L  V  C  H  W  T  K  G  R  G  *  I  R  C  L  D  I  *  W  C  *  C  H  C  S  *  R  V  T  P  K  Q  I  L  *  F  R  S  C  W  L  Y  C  F  K  N  C  F  H  C  *  P  L  L  K  *  A  A  P  *  *  *  E  E  K  I  E  R  L  Y  C  R  K  T  C  K  T  I  N  C  R  C  G  F  N  N  L  L  I  V  E  A  F  T  I  W  R  C  T  L  L  V  P  V  L  E  C  R  S  N  V  G  I  I  V  Y  Y  L  S  G  T  W  I  S  *  C  L  S  T  M  I  F  A  P  C  K  E  K  R  G  I  K  T  R  E  M  Q  E  V  K  A  F  R  V  H  A  L  L  H  I  K  T  P  S  A  T  M  A  V  S  L  L  R  C  S  Y  L  R  Y  T  Q  V  L  A  S  I  D  A  K  M  S  H  F  I  D  E  A  S  L  Y  T  N  F  G  V  H  R  C  Q  N  V  S  I  R  K  *  S  *  M  L  K  D  L  C  M  Q  H  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35989" stop="36294"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDSSSVDIAASGLGWFAIGLKGEAKLGVWTYDGVDVIVRNALLPNRSYDFEVAGFTVSKIVSTADRSSNKQRRDDKKRKLSDSTAEKPAKPSTVDVASTTC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36405" stop="36677"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLSTMIFAPCKEKRGIKTREMQEVKAFRVHALLHIKTPSATMAVSLLRCSYLRYTQVLASIDAKMSHFIDEASLYTNFGVHRCQNVSIRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36353" stop="36616"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IERGNNRLLPLRDLDKLMPFYHDFCPLQRKTRHQNQRNAGSKGIQGSCTIAYQDPFCYDGGIPFTLFLPSLYTSFGVYRCQNVSFHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="39512" PGL_stop="40238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39512" e_stop="40238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="39512" e_stop="40238" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39512" stop="40238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39513" stop="39845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231503" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAGGCTTAGCATCGATAGGGAGGAGCAAGAAGAGGTGGATGTGAACGATGATTTGGCGAGGGAACACTCGTTTTACACGCAGGGGTTGGAGGGTATACGTCAAGCGTACGTCAACTTTCAGTCAACCGGTGAACCATTTCTGAGGCCCTCTGATTATTACGCTGAAATGGTGAAGTCTGACACTCACATGGAGAAAGTTAAGGGCCGACTCTTGGCTGAGAAGAGGAGGATTGAGGAGTCCGAGGAGAGGAGGAAGGCAAGAGATAACAAGAAACTTGCTAAAGATGTACAAGCACAGAAGATGAAAGAACGAACTAAGCAGAAGAAGCAAGAGATTGAGTCCGTTAAGAAGTGGAGGAAGCAGAGGCAACAAAGTGGCTTCGACAAAGAAGATGCTGGCGGTCTAGATTTGGCATTTAATGGAGGAGAGGCGAATAAACCCTATCAGCGATCAAATAAGAAGAGACCTGGTGTATCTCCCGGAGATCGTTCAGGTGGTAAGGCAACATTTGGTGGAAAAGGTAAGGGGTTTGACAAAAAGAGGAAAAGCAGGGAATTCAAGGATTCAAAGTTTGGATTTGGTGGTAGAAAAGGTTTAAAGAAGCAGAACACTGCTGACACTACCAACGATTTCGGAGGATTCCACAAAGGTGATCGTTCTGCTAAAAACAACAAACGCGTTAAGAGATAATAGTTCTGCTCATCAGTTACTATTTTTTGTTGTA</gDNA_template>
            <first_frame> H  R  L  S  I  D  R  E  E  Q  E  E  V  D  V  N  D  D  L  A  R  E  H  S  F  Y  T  Q  G  L  E  G  I  R  Q  A  Y  V  N  F  Q  S  T  G  E  P  F  L  R  P  S  D  Y  Y  A  E  M  V  K  S  D  T  H  M  E  K  V  K  G  R  L  L  A  E  K  R  R  I  E  E  S  E  E  R  R  K  A  R  D  N  K  K  L  A  K  D  V  Q  A  Q  K  M  K  E  R  T  K  Q  K  K  Q  E  I  E  S  V  K  K  W  R  K  Q  R  Q  Q  S  G  F  D  K  E  D  A  G  G  L  D  L  A  F  N  G  G  E  A  N  K  P  Y  Q  R  S  N  K  K  R  P  G  V  S  P  G  D  R  S  G  G  K  A  T  F  G  G  K  G  K  G  F  D  K  K  R  K  S  R  E  F  K  D  S  K  F  G  F  G  G  R  K  G  L  K  K  Q  N  T  A  D  T  T  N  D  F  G  G  F  H  K  G  D  R  S  A  K  N  N  K  R  V  K  R  *  *  F  C  S  S  V  T  I  F  C  C  </first_frame>
            <second_frame>  T  G  L  A  S  I  G  R  S  K  K  R  W  M  *  T  M  I  W  R  G  N  T  R  F  T  R  R  G  W  R  V  Y  V  K  R  T  S  T  F  S  Q  P  V  N  H  F  *  G  P  L  I  I  T  L  K  W  *  S  L  T  L  T  W  R  K  L  R  A  D  S  W  L  R  R  G  G  L  R  S  P  R  R  G  G  R  Q  E  I  T  R  N  L  L  K  M  Y  K  H  R  R  *  K  N  E  L  S  R  R  S  K  R  L  S  P  L  R  S  G  G  S  R  G  N  K  V  A  S  T  K  K  M  L  A  V  *  I  W  H  L  M  E  E  R  R  I  N  P  I  S  D  Q  I  R  R  D  L  V  Y  L  P  E  I  V  Q  V  V  R  Q  H  L  V  E  K  V  R  G  L  T  K  R  G  K  A  G  N  S  R  I  Q  S  L  D  L  V  V  E  K  V  *  R  S  R  T  L  L  T  L  P  T  I  S  E  D  S  T  K  V  I  V  L  L  K  T  T  N  A  L  R  D  N  S  S  A  H  Q  L  L  F  F  V  V </second_frame>
            <third_frame>   Q  A  *  H  R  *  G  G  A  R  R  G  G  C  E  R  *  F  G  E  G  T  L  V  L  H  A  G  V  G  G  Y  T  S  S  V  R  Q  L  S  V  N  R  *  T  I  S  E  A  L  *  L  L  R  *  N  G  E  V  *  H  S  H  G  E  S  *  G  P  T  L  G  *  E  E  E  D  *  G  V  R  G  E  E  E  G  K  R  *  Q  E  T  C  *  R  C  T  S  T  E  D  E  R  T  N  *  A  E  E  A  R  D  *  V  R  *  E  V  E  E  A  E  A  T  K  W  L  R  Q  R  R  C  W  R  S  R  F  G  I  *  W  R  R  G  E  *  T  L  S  A  I  K  *  E  E  T  W  C  I  S  R  R  S  F  R  W  *  G  N  I  W  W  K  R  *  G  V  *  Q  K  E  E  K  Q  G  I  Q  G  F  K  V  W  I  W  W  *  K  R  F  K  E  A  E  H  C  *  H  Y  Q  R  F  R  R  I  P  Q  R  *  S  F  C  *  K  Q  Q  T  R  *  E  I  I  V  L  L  I  S  Y  Y  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39512" stop="40204"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRLSIDREEQEEVDVNDDLAREHSFYTQGLEGIRQAYVNFQSTGEPFLRPSDYYAEMVKSDTHMEKVKGRLLAEKRRIEESEERRKARDNKKLAKDVQAQKMKERTKQKKQEIESVKKWRKQRQQSGFDKEDAGGLDLAFNGGEANKPYQRSNKKRPGVSPGDRSGGKATFGGKGKGFDKKRKSREFKDSKFGFGGRKGLKKQNTADTTNDFGGFHKGDRSAKNNKRVKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="40277" PGL_stop="39726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40277" e_stop="39726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="40277" e_stop="39726" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40277" stop="39726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGTCTAGTAAAGTACAAAGGAATAACTTTGATCTAGTACAACAAAAAATAGTAACTGATGAGCAGAACTATTATCTCTTAACGCGTTTGTTGTTTTTAGCAGAACGATCACCTTTGTGGAATCCTCCGAAATCGTTGGTAGTGTCAGCAGTGTTCTGCTTCTTTAAACCTTTTCTACCACCAAATCCAAACTTTGAATCCTTGAATTCCCTGCTTTTCCTCTTTTTGTCAAACCCCTTACCTTTTCCACCAAATGTTGCCTTACCACCTGAACGATCTCCGGGAGATACACCAGGTCTCTTCTTATTTGATCGCTGATAGGGTTTATTCGCCTCTCCTCCATTAAATGCCAAATCTAGACCGCCAGCATCTTCTTTGTCGAAGCCACTTTGTTGCCTCTGCTTCCTCCACTTCTTAACGGACTCAATCTCTTGCTTCTTCTGCTTAGTTCGTTCTTTCATCTTCTGTGCTTGTACATCTTTAGCAAGTTTCTTGTTATCTCTTGCCTTCCTCCTCTCCTCGGACTCCTCAATCCTCCTCTTCTCAGCCA</gDNA_template>
            <first_frame> F  G  L  V  K  Y  K  G  I  T  L  I  *  Y  N  K  K  *  *  L  M  S  R  T  I  I  S  *  R  V  C  C  F  *  Q  N  D  H  L  C  G  I  L  R  N  R  W  *  C  Q  Q  C  S  A  S  L  N  L  F  Y  H  Q  I  Q  T  L  N  P  *  I  P  C  F  S  S  F  C  Q  T  P  Y  L  F  H  Q  M  L  P  Y  H  L  N  D  L  R  E  I  H  Q  V  S  S  Y  L  I  A  D  R  V  Y  S  P  L  L  H  *  M  P  N  L  D  R  Q  H  L  L  C  R  S  H  F  V  A  S  A  S  S  T  S  *  R  T  Q  S  L  A  S  S  A  *  F  V  L  S  S  S  V  L  V  H  L  *  Q  V  S  C  Y  L  L  P  S  S  S  P  R  T  P  Q  S  S  S  S  Q  P </first_frame>
            <second_frame>  L  V  *  *  S  T  K  E  *  L  *  S  S  T  T  K  N  S  N  *  *  A  E  L  L  S  L  N  A  F  V  V  F  S  R  T  I  T  F  V  E  S  S  E  I  V  G  S  V  S  S  V  L  L  L  *  T  F  S  T  T  K  S  K  L  *  I  L  E  F  P  A  F  P  L  F  V  K  P  L  T  F  S  T  K  C  C  L  T  T  *  T  I  S  G  R  Y  T  R  S  L  L  I  *  S  L  I  G  F  I  R  L  S  S  I  K  C  Q  I  *  T  A  S  I  F  F  V  E  A  T  L  L  P  L  L  P  P  L  L  N  G  L  N  L  L  L  L  L  L  S  S  F  F  H  L  L  C  L  Y  I  F  S  K  F  L  V  I  S  C  L  P  P  L  L  G  L  L  N  P  P  L  L  S   </second_frame>
            <third_frame>   W  S  S  K  V  Q  R  N  N  F  D  L  V  Q  Q  K  I  V  T  D  E  Q  N  Y  Y  L  L  T  R  L  L  F  L  A  E  R  S  P  L  W  N  P  P  K  S  L  V  V  S  A  V  F  C  F  F  K  P  F  L  P  P  N  P  N  F  E  S  L  N  S  L  L  F  L  F  L  S  N  P  L  P  F  P  P  N  V  A  L  P  P  E  R  S  P  G  D  T  P  G  L  F  L  F  D  R  *  *  G  L  F  A  S  P  P  L  N  A  K  S  R  P  P  A  S  S  L  S  K  P  L  C  C  L  C  F  L  H  F  L  T  D  S  I  S  C  F  F  C  L  V  R  S  F  I  F  C  A  C  T  S  L  A  S  F  L  L  S  L  A  F  L  L  S  S  D  S  S  I  L  L  F  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40275" stop="39958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSSKVQRNNFDLVQQKIVTDEQNYYLLTRLLFLAERSPLWNPPKSLVVSAVFCFFKPFLPPNPNFESLNSLLFLFLSNPLPFPPNVALPPERSPGDTPGLFLFDR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39954" stop="39727"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLFASPPLNAKSRPPASSLSKPLCCLCFLHFLTDSISCFFCLVRSFIFCACTSLASFLLSLAFLLSSDSSILLFSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="41235" PGL_stop="43674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41235" e_stop="41314"/>
            <exon e_start="41974" e_stop="42056"/>
            <exon e_start="42311" e_stop="42526"/>
            <exon e_start="43279" e_stop="43495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41235" e_stop="41314" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41315" i_stop="41973" i_length="659"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41974" e_stop="42056" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42311" e_stop="42526" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43279" e_stop="43495" e_length="217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41235" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41252" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279178" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41257" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41259" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41261" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41261" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41261" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41264" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41265" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41267" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41267" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41267" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294888" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41271" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41272" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41272" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225313" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41273" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41274" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41274" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225501" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41274" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41274" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215241" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41274" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215529" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41274" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232206" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41274" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232562" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41276" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41277" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41278" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41278" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41278" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41280" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41281" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41294" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41994" stop="42056"/>
              <exon start="42311" stop="42423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42018" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42051" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42328" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42365" stop="42526"/>
              <exon start="43279" stop="43463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42368" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42377" stop="42526"/>
              <exon start="43279" stop="43474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587891" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42401" stop="42526"/>
              <exon start="43279" stop="43475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42417" stop="42526"/>
              <exon start="43279" stop="43487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593500" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42470" stop="42526"/>
              <exon start="43279" stop="43488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616478" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTACAAAACCCTAACCCTAAGGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG : GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT : GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG : GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCA</gDNA_template>
            <first_frame> N  Y  K  T  L  T  L  R  R  R  P  A  I  A  L  E  L  A  V  H  S  S  P  S  S  R  R :   L  V  D  Q  Y  V  V  R  R  S  C  L  H  L  C  C  L  A  P  P  *  *  G  H  S  N  H   : C  R  E  N  F  N  F  S  *  S  S  *  C  D  S  G  T  I  L  A  S  P  V  C  *  A  C  *  E  E  K  P  W  *  S  H  H  E  C  R  C  W  W  W  W  W  C  S  R  C  C  C  P  H  W  W  C  C  W  W  C  R  S  C  C  P  C  C  *  G  K  E   : G  R  A  Q  G  R  K  *  *  *  Y  G  F  Q  S  V  *  L  E  A  P  P  S  T  I  F  A  S  Y  L  K  I  *  R  D  F  V  I  A  P  L  L  K  R  F  L  I  C  L  S  Q  L  N  V  T  L  T  *  L  W  F  M  N  I  S  Y  V  T  Y  F  R  L   </first_frame>
            <second_frame>  I  T  K  P  *  P  *  G  E  D  Q  Q  L  L  S  N  S  P  Y  T  L  R  R  L  L  E   : G  *  L  I  N  M  S  C  G  E  V  A  C  T  Y  A  A  L  L  L  H  D  E  D  I  P  I  T  :  A  E  K  I  S  T  L  V  K  A  A  N  V  T  V  E  P  Y  W  P  L  L  F  A  K  L  A  E  K  R  N  L  G  D  L  I  M  N  V  G  A  G  G  G  G  G  A  V  A  V  A  A  P  T  G  G  A  A  G  G  A  A  A  A  A  P  A  A  E  E  K  K  :  E  E  P  K  E  E  S  D  D  D  M  G  F  S  L  F  D  *  K  L  L  P  V  R  F  L  L  L  I  *  K  F  D  E  T  L  L  *  H  P  C  *  R  D  F  *  S  A  C  H  S  *  M  *  P  *  H  N  Y  G  L  *  T  S  V  M  L  L  I  S  D  S  </second_frame>
            <third_frame>   L  Q  N  P  N  P  K  E  K  T  S  N  C  S  R  T  R  R  T  L  F  A  V  F  S  K  :  V  S  *  S  I  C  R  A  E  K  L  L  A  L  M  L  P  C  S  S  M  M  R  T  F  Q  S  L :   Q  R  K  F  Q  L  *  L  K  Q  L  M  *  Q  W  N  H  T  G  L  S  C  L  L  S  L  L  R  R  E  T  L  V  I  S  S  *  M  S  V  L  V  V  V  V  V  Q  S  L  L  L  P  P  L  V  V  L  L  V  V  P  Q  L  L  P  L  L  L  R  K  R  R :   K  S  P  R  K  K  V  M  M  I  W  V  S  V  C  L  I  R  S  S  S  Q  Y  D  F  C  F  L  F  K  N  L  T  R  L  C  Y  S  T  L  V  E  E  I  F  D  L  L  V  T  V  K  C  N  L  D  I  I  M  V  Y  E  H  Q  L  C  Y  L  F  P  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41979" stop="42056"/>
                    <exon start="42311" stop="42526"/>
                    <exon start="43279" stop="43332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LINMSCGEVACTYAALLLHDEDIPITAEKISTLVKAANVTVEPYWPLLFAKLAEKRNLGDLIMNVGAGGGGGAVAVAAPTGGAAGGAAAAAPAAEEKKEEPKEESDDDMGFSLFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42423" stop="42526"/>
                    <exon start="43279" stop="43495"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSVLVVVVVQSLLLPPLVVLLVVPQLLPLLLRKRRKSPRKKVMMIWVSVCLIRSSSQYDFCFLFKNLTRLCYSTLVEEIFDLLVTVKCNLDIIMVYEHQLCYLFPTP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41263" e_stop="41314"/>
            <exon e_start="41979" e_stop="42056"/>
            <exon e_start="42311" e_stop="42526"/>
            <exon e_start="43279" e_stop="43674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.980"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.894"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="41263" e_stop="41314" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41315" i_stop="41978" i_length="664"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41979" e_stop="42056" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42057" i_stop="42310" i_length="254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42311" e_stop="42526" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="42527" i_stop="43278" i_length="752"/>
          </intron>
          <exon e_serial="4" e_score="0.894">
            <gDNA_exon_boundary e_start="43279" e_stop="43674" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41263" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41266" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41266" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41266" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41266" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41267" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41267" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41267" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41267" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41267" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41267" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41268" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41268" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41268" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41268" stop="41314"/>
              <exon start="41974" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41268" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41269" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41269" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559570" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587736" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41272" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41272" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41272" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41272" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605701" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41273" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559502" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41273" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41277" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41277" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41277" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606525" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41277" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41278" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599436" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41279" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41282" stop="41314"/>
              <exon start="41979" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600862" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41994" stop="42056"/>
              <exon start="42311" stop="42423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42018" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42051" stop="42056"/>
              <exon start="42311" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42328" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42365" stop="42526"/>
              <exon start="43279" stop="43463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42368" stop="42526"/>
              <exon start="43279" stop="43482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42377" stop="42526"/>
              <exon start="43279" stop="43474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587891" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42401" stop="42526"/>
              <exon start="43279" stop="43475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42417" stop="42526"/>
              <exon start="43279" stop="43487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593500" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42470" stop="42526"/>
              <exon start="43279" stop="43488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616478" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG : TTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT : GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG : GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCAATTATGTCGCTTTATAGTTTGGATGATCTTTTGGACTTCCATACGAGGACAATCCGATCATCCCAATCCAGTAGCTCTCCTTATAGACGACATGGAGACTACGGTACGTGACTGTGAATGAGTTCGTTCATGGCATTACCAGTAGCTTAAGTTTTTGTTCGATTTCTATCGTATGGTGC</gDNA_template>
            <first_frame> D  Q  Q  L  L  S  N  S  P  Y  T  L  R  R  L  L  E   : V  D  Q  Y  V  V  R  R  S  C  L  H  L  C  C  L  A  P  P  *  *  G  H  S  N  H   : C  R  E  N  F  N  F  S  *  S  S  *  C  D  S  G  T  I  L  A  S  P  V  C  *  A  C  *  E  E  K  P  W  *  S  H  H  E  C  R  C  W  W  W  W  W  C  S  R  C  C  C  P  H  W  W  C  C  W  W  C  R  S  C  C  P  C  C  *  G  K  E   : G  R  A  Q  G  R  K  *  *  *  Y  G  F  Q  S  V  *  L  E  A  P  P  S  T  I  F  A  S  Y  L  K  I  *  R  D  F  V  I  A  P  L  L  K  R  F  L  I  C  L  S  Q  L  N  V  T  L  T  *  L  W  F  M  N  I  S  Y  V  T  Y  F  R  L  Q  L  C  R  F  I  V  W  M  I  F  W  T  S  I  R  G  Q  S  D  H  P  N  P  V  A  L  L  I  D  D  M  E  T  T  V  R  D  C  E  *  V  R  S  W  H  Y  Q  *  L  K  F  L  F  D  F  Y  R  M  V  </first_frame>
            <second_frame>  T  S  N  C  S  R  T  R  R  T  L  F  A  V  F  S  K  :  L  I  N  M  S  C  G  E  V  A  C  T  Y  A  A  L  L  L  H  D  E  D  I  P  I  T  :  A  E  K  I  S  T  L  V  K  A  A  N  V  T  V  E  P  Y  W  P  L  L  F  A  K  L  A  E  K  R  N  L  G  D  L  I  M  N  V  G  A  G  G  G  G  G  A  V  A  V  A  A  P  T  G  G  A  A  G  G  A  A  A  A  A  P  A  A  E  E  K  K  :  E  E  P  K  E  E  S  D  D  D  M  G  F  S  L  F  D  *  K  L  L  P  V  R  F  L  L  L  I  *  K  F  D  E  T  L  L  *  H  P  C  *  R  D  F  *  S  A  C  H  S  *  M  *  P  *  H  N  Y  G  L  *  T  S  V  M  L  L  I  S  D  S  N  Y  V  A  L  *  F  G  *  S  F  G  L  P  Y  E  D  N  P  I  I  P  I  Q  *  L  S  L  *  T  T  W  R  L  R  Y  V  T  V  N  E  F  V  H  G  I  T  S  S  L  S  F  C  S  I  S  I  V  W  C </second_frame>
            <third_frame>   P  A  I  A  L  E  L  A  V  H  S  S  P  S  S  R  S :   *  S  I  C  R  A  E  K  L  L  A  L  M  L  P  C  S  S  M  M  R  T  F  Q  S  L :   Q  R  K  F  Q  L  *  L  K  Q  L  M  *  Q  W  N  H  T  G  L  S  C  L  L  S  L  L  R  R  E  T  L  V  I  S  S  *  M  S  V  L  V  V  V  V  V  Q  S  L  L  L  P  P  L  V  V  L  L  V  V  P  Q  L  L  P  L  L  L  R  K  R  R :   K  S  P  R  K  K  V  M  M  I  W  V  S  V  C  L  I  R  S  S  S  Q  Y  D  F  C  F  L  F  K  N  L  T  R  L  C  Y  S  T  L  V  E  E  I  F  D  L  L  V  T  V  K  C  N  L  D  I  I  M  V  Y  E  H  Q  L  C  Y  L  F  P  T  P  I  M  S  L  Y  S  L  D  D  L  L  D  F  H  T  R  T  I  R  S  S  Q  S  S  S  S  P  Y  R  R  H  G  D  Y  G  T  *  L  *  M  S  S  F  M  A  L  P  V  A  *  V  F  V  R  F  L  S  Y  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42423" stop="42526"/>
                    <exon start="43279" stop="43606"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSVLVVVVVQSLLLPPLVVLLVVPQLLPLLLRKRRKSPRKKVMMIWVSVCLIRSSSQYDFCFLFKNLTRLCYSTLVEEIFDLLVTVKCNLDIIMVYEHQLCYLFPTPIMSLYSLDDLLDFHTRTIRSSQSSSSPYRRHGDYGT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41264" stop="41314"/>
                    <exon start="41979" stop="42056"/>
                    <exon start="42311" stop="42526"/>
                    <exon start="43279" stop="43332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSNCSRTRRTLFAVFSKLINMSCGEVACTYAALLLHDEDIPITAEKISTLVKAANVTVEPYWPLLFAKLAEKRNLGDLIMNVGAGGGGGAVAVAAPTGGAAGGAAAAAPAAEEKKEEPKEESDDDMGFSLFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="50908" PGL_stop="52029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50908" e_stop="51070"/>
            <exon e_start="51154" e_stop="51304"/>
            <exon e_start="51445" e_stop="51575"/>
            <exon e_start="51663" e_stop="52029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.588" e_score="0.994"/>
          <exon-intron don_prob="0.962" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="50908" e_stop="51070" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.588">
            <gDNA_intron_boundary i_start="51071" i_stop="51153" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51154" e_stop="51304" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.877">
            <gDNA_intron_boundary i_start="51305" i_stop="51444" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51445" e_stop="51575" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.901" acc_prob="0.986">
            <gDNA_intron_boundary i_start="51576" i_stop="51662" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.910">
            <gDNA_exon_boundary e_start="51663" e_stop="52029" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50908" stop="51070"/>
              <exon start="51154" stop="51304"/>
              <exon start="51445" stop="51575"/>
              <exon start="51663" stop="51996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50974" stop="51070"/>
              <exon start="51154" stop="51304"/>
              <exon start="51445" stop="51575"/>
              <exon start="51663" stop="51946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50974" stop="51070"/>
              <exon start="51154" stop="51304"/>
              <exon start="51445" stop="51575"/>
              <exon start="51663" stop="51840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51168" stop="51304"/>
              <exon start="51445" stop="51575"/>
              <exon start="51663" stop="52029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428025" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGGCTGTAGAACAACTCGTTAAAGATGAATCTCCTGAAAAAATGACCTCGGATCAAATTTTCTGGTTATATACTATCATGATAACGGCCACAGTAGTAAAACTTGCCCTTTGGTTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTACGCAAAG : GATCACTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTGTACTTGGCGATAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATGCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAACGCAG : TGTCACTAGTGGGACAATCAGCCCCACCCGAATACTTGCAAAAGTTAACGTATCTTGTGATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTCGTAGAG : GTAGATATTGAACTCCCGGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAACTCGAAAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTACCAAACACTGAACCTTAGGTTCATGTTTACGTTTAAGCCCGGATAAAGGAAGAGGGTTGTTATTATTATCGACGATTCGGGGTTTTGTTGTTTTTTTTTACACACATTTTAACTATATAAATGTGTATATTCATATGATCCAGCATAAGGGATTGTTGAAAAGAGAGGATATCAAGAACATGGATTTATTTTCAGATGATAGGTC</gDNA_template>
            <first_frame> P  G  C  R  T  T  R  *  R  *  I  S  *  K  N  D  L  G  S  N  F  L  V  I  Y  Y  H  D  N  G  H  S  S  K  T  C  P  L  V  I  L  Q  K  L  R  K  Q  H  C  P  C  L  R  K   : G  S  L  F  *  R  G  Y  *  C  S  R  T  G  S  S  C  T  W  R  *  I  L  L  V  D  *  S  C  W  C  H  Y  A  C  T  L  Y  H  H  Q  L  V  R  N  C  F  R  K  R  S :   V  T  S  G  T  I  S  P  T  R  I  L  A  K  V  N  V  S  C  D  K  T  P  S  S  E  A  Y  *  Y  S  S  S  L  H  I  W  C  L  V  L  R  R   : G  R  Y  *  T  P  G  R  F  A  F  E  R  S  T  C  Y  R  R  N  S  T  N  K  T  R  K  T  P  *  S  *  T  S  I  R  S  S  R  F  *  M  *  T  Q  T  R  A  L  C  S  Q  Q  V  T  K  H  *  T  L  G  S  C  L  R  L  S  P  D  K  G  R  G  L  L  L  L  S  T  I  R  G  F  V  V  F  F  Y  T  H  F  N  Y  I  N  V  Y  I  H  M  I  Q  H  K  G  L  L  K  R  E  D  I  K  N  M  D  L  F  S  D  D  R   </first_frame>
            <second_frame>  Q  A  V  E  Q  L  V  K  D  E  S  P  E  K  M  T  S  D  Q  I  F  W  L  Y  T  I  M  I  T  A  T  V  V  K  L  A  L  W  L  Y  C  R  S  S  G  N  N  I  V  R  A  Y  A  K  :  D  H  Y  F  D  V  V  T  N  V  V  G  L  V  A  A  V  L  G  D  K  F  Y  W  W  I  D  P  V  G  A  I  M  L  A  L  Y  T  I  T  N  W  S  G  T  V  L  E  N  A   : V  S  L  V  G  Q  S  A  P  P  E  Y  L  Q  K  L  T  Y  L  V  I  R  H  P  Q  V  K  R  I  D  T  V  R  A  Y  T  F  G  V  L  Y  F  V  E  :  V  D  I  E  L  P  E  D  L  P  L  K  E  A  H  A  I  G  E  T  L  Q  I  K  L  E  K  L  P  E  V  E  R  A  F  V  H  L  D  F  E  C  E  H  K  P  E  H  S  V  L  S  R  L  P  N  T  E  P  *  V  H  V  Y  V  *  A  R  I  K  E  E  G  C  Y  Y  Y  R  R  F  G  V  L  L  F  F  F  T  H  I  L  T  I  *  M  C  I  F  I  *  S  S  I  R  D  C  *  K  E  R  I  S  R  T  W  I  Y  F  Q  M  I  G  </second_frame>
            <third_frame>   R  L  *  N  N  S  L  K  M  N  L  L  K  K  *  P  R  I  K  F  S  G  Y  I  L  S  *  *  R  P  Q  *  *  N  L  P  F  G  Y  T  A  E  A  Q  E  T  T  L  S  V  P  T  Q  R :   I  T  I  L  T  W  L  L  M  *  S  D  W  *  Q  L  Y  L  A  I  N  S  T  G  G  L  I  L  L  V  P  L  C  L  H  F  I  P  S  P  T  G  Q  E  L  F  *  K  T  Q  :  C  H  *  W  D  N  Q  P  H  P  N  T  C  K  S  *  R  I  L  *  *  D  T  L  K  *  S  V  L  I  Q  F  E  P  T  H  L  V  S  C  T  S  *  R :   *  I  L  N  S  R  K  I  C  L  *  K  K  H  M  L  S  E  K  L  Y  K  *  N  S  K  N  S  L  K  L  N  E  H  S  F  I  S  I  L  N  V  N  T  N  Q  S  T  L  F  S  A  G  Y  Q  T  L  N  L  R  F  M  F  T  F  K  P  G  *  R  K  R  V  V  I  I  I  D  D  S  G  F  C  C  F  F  L  H  T  F  *  L  Y  K  C  V  Y  S  Y  D  P  A  *  G  I  V  E  K  R  G  Y  Q  E  H  G  F  I  F  R  *  *  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50909" stop="51070"/>
                    <exon start="51154" stop="51304"/>
                    <exon start="51445" stop="51575"/>
                    <exon start="51663" stop="51842"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAVEQLVKDESPEKMTSDQIFWLYTIMITATVVKLALWLYCRSSGNNIVRAYAKDHYFDVVTNVVGLVAAVLGDKFYWWIDPVGAIMLALYTITNWSGTVLENAVSLVGQSAPPEYLQKLTYLVIRHPQVKRIDTVRAYTFGVLYFVEVDIELPEDLPLKEAHAIGETLQIKLEKLPEVERAFVHLDFECEHKPEHSVLSRLPNTEP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51836" stop="52027"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLGSCLRLSPDKGRGLLLLSTIRGFVVFFYTHFNYINVYIHMIQHKGLLKREDIKNMDLFSDDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="55717" PGL_stop="58078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55717" e_stop="56047"/>
            <exon e_start="56737" e_stop="56856"/>
            <exon e_start="56951" e_stop="57185"/>
            <exon e_start="57994" e_stop="58078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.960" e_score="0.997"/>
          <exon-intron don_prob="0.571" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="55717" e_stop="56047" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.960">
            <gDNA_intron_boundary i_start="56048" i_stop="56736" i_length="689"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56737" e_stop="56856" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.571" acc_prob="0.952">
            <gDNA_intron_boundary i_start="56857" i_stop="56950" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="56951" e_stop="57185" e_length="235"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57186" i_stop="57993" i_length="808"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="57994" e_stop="58078" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55717" stop="56047"/>
              <exon start="56737" stop="56856"/>
              <exon start="56951" stop="57185"/>
              <exon start="57994" stop="58078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGTTCACCGGATCTTCACCGTCCGATCGGAAATCATTACCGGCGAATCCATTTCGCAGTGAAAAATCTGCCGGAGTTGTAGCAATTCCGGTGATGGATCAATGGAGAACTAAAACACCGGAGAAACCGATCCAAAATCGCATGGCGCGATCACTGCAGTCCCTGAAAGACGTCAGAGAAGCTTCTCAGAAGCTCCGGAAACACGATCTGATCCAACGCGAGGTTTCTGATCCGTTATTAAGCTACGGTGAAGTGAAATCTCCATTGGTAGCTGGATCGCCGGTTTCTGAACGGAAGAAGCATGTGAACTCGGTAAAGCTGCCGGAAAA : GTATGAAATGTTGGAAAAATTCTTCAATAGCATGGATAGTTCAATTCGGCTGCTACATTTGAAGGGATCTGCAACAACTTTCACTAATATTAGTGCGAAAGTAGAGAGTTTGATCGATAA : GAGGTTTACTTGCAGTCATTTAGCTCAGCTGAAGTTTATTTTACCTGAAGCCATTGAGATAAAGAAGATTCTCAAGCACGATGAGCGCAGTTGGTGCATGAAGCCGGATCTTTATATCACTTTAAATGCAAATGCAGTTGATAATAGTGAGAAGTGGAAATCTAACAGTAGCAGTGTTCTATTGAGGAAAATATTCCGCTCTCGGCTCTTGGATTTCTTCAAGTCACACCCTGAG : GGTGATGACATTCCTGAGGGAATGCTGCCAGGCCCATTCACTCAGTCTAAGCAAGTAGTGACCAACTCATGTAGACCTTCTGGCT</gDNA_template>
            <first_frame> W  S  S  P  D  L  H  R  P  I  G  N  H  Y  R  R  I  H  F  A  V  K  N  L  P  E  L  *  Q  F  R  *  W  I  N  G  E  L  K  H  R  R  N  R  S  K  I  A  W  R  D  H  C  S  P  *  K  T  S  E  K  L  L  R  S  S  G  N  T  I  *  S  N  A  R  F  L  I  R  Y  *  A  T  V  K  *  N  L  H  W  *  L  D  R  R  F  L  N  G  R  S  M  *  T  R  *  S  C  R  K   : S  M  K  C  W  K  N  S  S  I  A  W  I  V  Q  F  G  C  Y  I  *  R  D  L  Q  Q  L  S  L  I  L  V  R  K  *  R  V  *  S  I   : R  G  L  L  A  V  I  *  L  S  *  S  L  F  Y  L  K  P  L  R  *  R  R  F  S  S  T  M  S  A  V  G  A  *  S  R  I  F  I  S  L  *  M  Q  M  Q  L  I  I  V  R  S  G  N  L  T  V  A  V  F  Y  *  G  K  Y  S  A  L  G  S  W  I  S  S  S  H  T  L  R :   V  M  T  F  L  R  E  C  C  Q  A  H  S  L  S  L  S  K  *  *  P  T  H  V  D  L  L  A </first_frame>
            <second_frame>  G  V  H  R  I  F  T  V  R  S  E  I  I  T  G  E  S  I  S  Q  *  K  I  C  R  S  C  S  N  S  G  D  G  S  M  E  N  *  N  T  G  E  T  D  P  K  S  H  G  A  I  T  A  V  P  E  R  R  Q  R  S  F  S  E  A  P  E  T  R  S  D  P  T  R  G  F  *  S  V  I  K  L  R  *  S  E  I  S  I  G  S  W  I  A  G  F  *  T  E  E  A  C  E  L  G  K  A  A  G  K  :  V  *  N  V  G  K  I  L  Q  *  H  G  *  F  N  S  A  A  T  F  E  G  I  C  N  N  F  H  *  Y  *  C  E  S  R  E  F  D  R  *  :  E  V  Y  L  Q  S  F  S  S  A  E  V  Y  F  T  *  S  H  *  D  K  E  D  S  Q  A  R  *  A  Q  L  V  H  E  A  G  S  L  Y  H  F  K  C  K  C  S  *  *  *  *  E  V  E  I  *  Q  *  Q  C  S  I  E  E  N  I  P  L  S  A  L  G  F  L  Q  V  T  P  *   : G  *  *  H  S  *  G  N  A  A  R  P  I  H  S  V  *  A  S  S  D  Q  L  M  *  T  F  W   </second_frame>
            <third_frame>   E  F  T  G  S  S  P  S  D  R  K  S  L  P  A  N  P  F  R  S  E  K  S  A  G  V  V  A  I  P  V  M  D  Q  W  R  T  K  T  P  E  K  P  I  Q  N  R  M  A  R  S  L  Q  S  L  K  D  V  R  E  A  S  Q  K  L  R  K  H  D  L  I  Q  R  E  V  S  D  P  L  L  S  Y  G  E  V  K  S  P  L  V  A  G  S  P  V  S  E  R  K  K  H  V  N  S  V  K  L  P  E  K :   Y  E  M  L  E  K  F  F  N  S  M  D  S  S  I  R  L  L  H  L  K  G  S  A  T  T  F  T  N  I  S  A  K  V  E  S  L  I  D  K :   R  F  T  C  S  H  L  A  Q  L  K  F  I  L  P  E  A  I  E  I  K  K  I  L  K  H  D  E  R  S  W  C  M  K  P  D  L  Y  I  T  L  N  A  N  A  V  D  N  S  E  K  W  K  S  N  S  S  S  V  L  L  R  K  I  F  R  S  R  L  L  D  F  F  K  S  H  P  E  :  G  D  D  I  P  E  G  M  L  P  G  P  F  T  Q  S  K  Q  V  V  T  N  S  C  R  P  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55719" stop="56047"/>
                    <exon start="56737" stop="56856"/>
                    <exon start="56951" stop="57185"/>
                    <exon start="57994" stop="58077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFTGSSPSDRKSLPANPFRSEKSAGVVAIPVMDQWRTKTPEKPIQNRMARSLQSLKDVREASQKLRKHDLIQREVSDPLLSYGEVKSPLVAGSPVSERKKHVNSVKLPEKYEMLEKFFNSMDSSIRLLHLKGSATTFTNISAKVESLIDKRFTCSHLAQLKFILPEAIEIKKILKHDERSWCMKPDLYITLNANAVDNSEKWKSNSSSVLLRKIFRSRLLDFFKSHPEGDDIPEGMLPGPFTQSKQVVTNSCRPSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="58225" PGL_stop="59737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58225" e_stop="58662"/>
            <exon e_start="58816" e_stop="59017"/>
            <exon e_start="59115" e_stop="59205"/>
            <exon e_start="59556" e_stop="59737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="0.998"/>
          <exon-intron don_prob="0.691" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="58225" e_stop="58662" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="58663" i_stop="58815" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58816" e_stop="59017" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.691" acc_prob="0.995">
            <gDNA_intron_boundary i_start="59018" i_stop="59114" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59115" e_stop="59205" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59206" i_stop="59555" i_length="350"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="59556" e_stop="59737" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58225" stop="58662"/>
              <exon start="58816" stop="59017"/>
              <exon start="59115" stop="59205"/>
              <exon start="59556" stop="59737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58226" stop="58662"/>
              <exon start="58816" stop="59017"/>
              <exon start="59115" stop="59205"/>
              <exon start="59556" stop="59655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGGGCTCGTTTCTCCAGCTTCAATACCCCTTAATGTCCCAAGTTCCACCAAGAAGAAAACAGTAGCATGTTCTGATGCTCCTAAGTTATCTCTAAAACAAACTAGCATCATGAAATGCTCAGCAGGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTCCAGCAACCCCTATGCTCGAACCTCCTAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCAATAAAACTAGCTAGACGCCCGTCAACTAGAAGGTCGTTGCTCTTCGGTACTCCTGTGAAGAGTGCAAATGCTGGTGATAAAGTCTGCGAGAATGGAAGGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGAGAATCTTCTGCAATCG : ATAGGAGAAAAGGAGAGTGAAGCACTAGCGGAGCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCAAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGAAAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAA : GTGAAGTTGAACAGCAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAAACCAGCATCTAATGGAACTCTTCTCTTACT : TGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACAAGAAACTAGTGATTTGTACTTTATTTTACCAAATAGACGTGTAAGGAATAACAATTTAGAAAAAAGTTGTAAATAATAAGTGTTTTGTCTAATTAATACAGTACCACTTGCGTTGC</gDNA_template>
            <first_frame> L  G  L  V  S  P  A  S  I  P  L  N  V  P  S  S  T  K  K  K  T  V  A  C  S  D  A  P  K  L  S  L  K  Q  T  S  I  M  K  C  S  A  G  G  V  V  L  A  S  S  P  C  H  P  P  A  L  P  M  I  E  A  K  K  G  E  D  G  S  T  S  A  P  A  T  P  M  L  E  P  P  K  R  C  Y  M  S  P  D  D  P  A  E  S  P  I  K  L  A  R  R  P  S  T  R  R  S  L  L  F  G  T  P  V  K  S  A  N  A  G  D  K  V  C  E  N  G  R  F  S  T  D  N  D  I  L  D  I  L  P  E  N  L  L  Q  S  :  I  G  E  K  E  S  E  A  L  A  E  Q  N  P  A  I  S  Q  A  K  R  R  K  Q  M  I  A  C  L  P  H  L  F  D  M  I  Y  F  L  F  Q  S  I  K  R  S  V  M  T  K  E  E  L  M  H  R  V  I  S  S  H  L  E  I  T  D  K   : S  E  V  E  Q  Q  L  L  L  L  Q  E  L  A  P  E  W  I  Y  E  K  P  A  S  N  G  T  L  L  L  L :   V  S  K  I  S  N  P  D  T  I  R  S  R  L  A  E  A  N  *  E  K  Q  E  T  S  D  L  Y  F  I  L  P  N  R  R  V  R  N  N  N  L  E  K  S  C  K  *  *  V  F  C  L  I  N  T  V  P  L  A  L  </first_frame>
            <second_frame>  S  G  S  F  L  Q  L  Q  Y  P  L  M  S  Q  V  P  P  R  R  K  Q  *  H  V  L  M  L  L  S  Y  L  *  N  K  L  A  S  *  N  A  Q  Q  E  G  L  F  W  L  V  H  H  A  I  H  L  L  F  L  *  L  K  P  K  R  E  K  M  V  L  H  P  L  Q  Q  P  L  C  S  N  L  L  R  D  V  T  *  V  Q  M  I  Q  L  N  H  Q  *  N  *  L  D  A  R  Q  L  E  G  R  C  S  S  V  L  L  *  R  V  Q  M  L  V  I  K  S  A  R  M  E  G  F  Q  L  I  M  I  F  L  T  F  F  L  R  I  F  C  N  R :   *  E  K  R  R  V  K  H  *  R  S  K  I  Q  P  Y  P  K  Q  K  G  A  N  R  *  L  L  V  C  L  T  S  L  T  *  F  I  S  C  F  N  L  L  N  V  L  S  *  R  K  R  S  S  C  T  E  *  F  Q  A  I  *  R  *  R  T  K  :  V  K  L  N  S  N  S  Y  Y  C  K  N  W  L  L  N  G  F  M  R  N  Q  H  L  M  E  L  F  S  Y   : L  L  A  R  Y  Q  I  L  T  Q  F  V  Q  D  *  Q  K  P  I  E  R  N  K  K  L  V  I  C  T  L  F  Y  Q  I  D  V  *  G  I  T  I  *  K  K  V  V  N  N  K  C  F  V  *  L  I  Q  Y  H  L  R  C </second_frame>
            <third_frame>   R  A  R  F  S  S  F  N  T  P  *  C  P  K  F  H  Q  E  E  N  S  S  M  F  *  C  S  *  V  I  S  K  T  N  *  H  H  E  M  L  S  R  R  G  C  F  G  *  F  T  M  P  S  T  C  S  S  Y  D  *  S  Q  K  G  R  R  W  F  Y  I  R  S  S  N  P  Y  A  R  T  S  *  E  M  L  H  E  S  R  *  S  S  *  I  T  N  K  T  S  *  T  P  V  N  *  K  V  V  A  L  R  Y  S  C  E  E  C  K  C  W  *  *  S  L  R  E  W  K  V  F  N  *  *  *  Y  S  *  H  S  S  *  E  S  S  A  I   : D  R  R  K  G  E  *  S  T  S  G  A  K  S  S  H  I  P  S  K  K  A  Q  T  D  D  C  L  F  A  S  P  L  *  H  D  L  F  P  V  S  I  Y  *  T  F  C  H  D  E  R  G  A  H  A  Q  S  N  F  K  P  F  R  D  N  G  Q  K :   *  S  *  T  A  T  P  I  T  A  R  I  G  S  *  M  D  L  *  E  T  S  I  *  W  N  S  S  L  T  :  C  *  Q  D  I  K  S  *  H  N  S  F  K  T  S  R  S  Q  L  R  E  T  R  N  *  *  F  V  L  Y  F  T  K  *  T  C  K  E  *  Q  F  R  K  K  L  *  I  I  S  V  L  S  N  *  Y  S  T  T  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58225" stop="58662"/>
                    <exon start="58816" stop="59017"/>
                    <exon start="59115" stop="59205"/>
                    <exon start="59556" stop="59613"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGLVSPASIPLNVPSSTKKKTVACSDAPKLSLKQTSIMKCSAGGVVLASSPCHPPALPMIEAKKGEDGSTSAPATPMLEPPKRCYMSPDDPAESPIKLARRPSTRRSLLFGTPVKSANAGDKVCENGRFSTDNDILDILPENLLQSIGEKESEALAEQNPAISQAKRRKQMIACLPHLFDMIYFLFQSIKRSVMTKEELMHRVISSHLEITDKSEVEQQLLLLQELAPEWIYEKPASNGTLLLLVSKISNPDTIRSRLAEAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="64082" PGL_stop="59842"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64082" e_stop="63986"/>
            <exon e_start="62829" e_stop="62726"/>
            <exon e_start="62110" e_stop="61945"/>
            <exon e_start="60853" e_stop="60761"/>
            <exon e_start="60472" e_stop="60341"/>
            <exon e_start="60243" e_stop="59842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.441" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.954" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64082" e_stop="63986" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.860">
            <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62829" e_stop="62726" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.441" acc_prob="0.952">
            <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62110" e_stop="61945" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60853" e_stop="60761" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60472" e_stop="60341" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.954">
            <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60243" e_stop="59842" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64082" stop="63986"/>
              <exon start="62829" stop="62726"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64079" stop="63986"/>
              <exon start="62829" stop="62726"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="60114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64079" stop="63986"/>
              <exon start="62829" stop="62726"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64077" stop="63986"/>
              <exon start="62829" stop="62726"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64064" stop="63986"/>
              <exon start="62829" stop="62726"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64063" stop="63986"/>
              <exon start="62829" stop="62726"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="59996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64058" stop="63986"/>
              <exon start="62829" stop="62726"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62075" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="59842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61965" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="59842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60368" stop="60341"/>
              <exon start="60243" stop="59976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT : TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG : AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT : GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG : GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG : GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</gDNA_template>
            <first_frame> K  K  E  R  E  M  A  S  H  L  S  F  S  T  P  S  A  L  W  G  S  Y  L  N  P  K  S  S  S  L  S  Q   : L  N  M  K  K  R  V  G  S  H  V  N  C  S  S  E  D  E  S  C  T  S  A  S  S  E  H  L  R  E  H  V  E  E  K  :  R  S  Q  T  S  V  S  R  R  W  C  L  T  C  L  C  S  T  G  A  L  I  T  A  S  G  N  P  I  S  E  P  R  A  I  A  L  D  G  N  E  S  P  G  C  R  N  C  G  G  S  G  A  I  I   : C  D  M  C  G  G  T  G  K  W  K  A  L  N  R  K  R  A  K  D  V  Y  E  F  T  E  C  P  N  C  Y   : G  R  G  K  L  V  C  P  V  C  L  G  T  G  L  P  N  N  K  G  L  L  R  R  P  D  A  R  K  L  L  D  K  M  Y  N  G  R  L  L  P  N  S  *   : G  *  K  L  Y  Y  T  R  R  T  M  R  R  D  S  K  *  L  W  M  *  Q  L  L  C  C  *  V  Y  L  L  N  L  S  M  N  S  R  S  L  P  D  L  S  *  Y  R  G  S  S  I  P  G  L  S  S  T  P  P  P  F  W  K  E  M  G  S  S  I  C  H  M  I  E  L  A  Y  Q  L  F  R  N  I  V  R  E  E  Q  *  F  G  V  Q  F  A  Y  C  L  H  I  S  *  Q  *  R  I  K  E  E  K  T  D  C  F  V  L  W  I  V  S  G  K  L  L  L  K  V  C  T  I  Y  Y  F  L  </first_frame>
            <second_frame>  K  K  R  E  R  W  L  P  T  S  H  F  L  L  L  Q  L  Y  G  V  H  T  *  T  P  N  L  P  L  *  V  S  :  *  I  *  R  R  G  *  G  L  M  *  T  A  A  Q  K  M  R  V  V  L  L  H  L  P  S  I  Y  G  N  M  *  R  K  R :   D  L  K  H  Q  S  H  G  D  G  V  *  P  A  Y  A  Q  L  E  L  *  *  L  L  L  E  I  Q  F  L  N  Q  E  Q  L  P  *  M  E  M  K  V  L  A  V  G  I  V  G  V  V  A  L  *  F  :  V  I  C  V  V  V  Q  E  N  G  K  L  *  T  E  N  E  L  K  T  F  M  S  S  L  S  A  P  I  V  T  :  D  E  G  N  *  Y  V  L  Y  V  *  E  L  V  Y  L  I  I  K  V  F  L  G  G  Q  T  Q  G  S  Y  L  T  R  C  I  M  D  D  C  C  Q  T  H  K  :  V  E  S  C  T  T  P  E  G  Q  *  E  E  T  Q  S  N  Y  G  C  N  N  Y  C  V  V  E  C  T  C  *  I  S  R  *  T  L  V  L  S  L  I  S  L  D  T  G  V  V  V  F  P  D  Y  H  R  P  L  H  H  S  G  K  K  W  E  V  V  S  A  T  *  *  S  *  H  I  N  Y  F  G  I  L  *  E  K  S  N  N  L  V  F  N  L  H  I  V  F  I  S  H  N  N  R  E  *  K  K  R  K  Q  T  V  L  Y  F  G  L  Y  L  E  N  C  Y  L  K  F  V  P  S  I  I  F  * </second_frame>
            <third_frame>   K  R  E  R  D  G  F  P  P  L  I  F  Y  S  F  S  S  M  G  F  I  L  K  P  Q  I  F  L  F  K  S  V :   E  Y  E  E  E  G  R  V  S  C  E  L  Q  L  R  R  *  E  L  Y  F  C  I  F  R  A  F  T  G  T  C  R  G  K   : E  I  S  N  I  S  L  T  E  M  V  S  D  L  P  M  L  N  W  S  S  D  N  C  F  W  K  S  N  F  *  T  K  S  N  C  L  R  W  K  *  K  S  W  L  S  E  L  W  G  *  W  R  Y  N  L :   *  Y  V  W  W  Y  R  K  M  E  S  S  K  Q  K  T  S  *  R  R  L  *  V  H  *  V  P  Q  L  L  R :   T  R  E  T  S  M  S  C  M  F  R  N  W  F  T  *  *  *  R  S  S  *  A  A  R  R  K  E  V  T  *  Q  D  V  *  W  T  T  V  A  K  L  I  R :   L  K  A  V  L  H  Q  K  D  N  E  K  R  L  K  V  T  M  D  V  T  T  I  V  L  L  S  V  P  V  K  S  L  D  E  L  S  F  S  P  *  S  L  L  I  P  G  *  *  Y  S  R  T  I  I  D  P  S  T  I  L  E  R  N  G  K  *  Y  L  P  H  D  R  V  S  I  S  I  I  S  E  Y  C  E  R  R  A  I  I  W  C  S  I  C  I  L  S  S  Y  L  I  T  I  E  N  K  R  R  E  N  R  L  F  C  T  L  D  C  I  W  K  I  V  T  *  S  L  Y  H  L  L  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64082" stop="63986"/>
                    <exon start="62829" stop="62726"/>
                    <exon start="62110" stop="61945"/>
                    <exon start="60853" stop="60761"/>
                    <exon start="60472" stop="60342"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKEREMASHLSFSTPSALWGSYLNPKSSSLSQLNMKKRVGSHVNCSSEDESCTSASSEHLREHVEEKRSQTSVSRRWCLTCLCSTGALITASGNPISEPRAIALDGNESPGCRNCGGSGAIICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64060" e_stop="63986"/>
            <exon e_start="62110" e_stop="61945"/>
            <exon e_start="60853" e_stop="60761"/>
            <exon e_start="60472" e_stop="60341"/>
            <exon e_start="60243" e_stop="59842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.954" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64060" e_stop="63986" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.952">
            <gDNA_intron_boundary i_start="63985" i_stop="62111" i_length="1875"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62110" e_stop="61945" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60853" e_stop="60761" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60472" e_stop="60341" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.954">
            <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60243" e_stop="59842" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64060" stop="63986"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="60178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64060" stop="63986"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64059" stop="63986"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="60061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62075" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="59842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61965" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="59842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60368" stop="60341"/>
              <exon start="60243" stop="59976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT : AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT : GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG : GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG : GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</gDNA_template>
            <first_frame> P  T  S  H  F  L  L  L  Q  L  Y  G  V  H  T  *  T  P  N  L  P  L  *  V  S  :  R  S  Q  T  S  V  S  R  R  W  C  L  T  C  L  C  S  T  G  A  L  I  T  A  S  G  N  P  I  S  E  P  R  A  I  A  L  D  G  N  E  S  P  G  C  R  N  C  G  G  S  G  A  I  I   : C  D  M  C  G  G  T  G  K  W  K  A  L  N  R  K  R  A  K  D  V  Y  E  F  T  E  C  P  N  C  Y   : G  R  G  K  L  V  C  P  V  C  L  G  T  G  L  P  N  N  K  G  L  L  R  R  P  D  A  R  K  L  L  D  K  M  Y  N  G  R  L  L  P  N  S  *   : G  *  K  L  Y  Y  T  R  R  T  M  R  R  D  S  K  *  L  W  M  *  Q  L  L  C  C  *  V  Y  L  L  N  L  S  M  N  S  R  S  L  P  D  L  S  *  Y  R  G  S  S  I  P  G  L  S  S  T  P  P  P  F  W  K  E  M  G  S  S  I  C  H  M  I  E  L  A  Y  Q  L  F  R  N  I  V  R  E  E  Q  *  F  G  V  Q  F  A  Y  C  L  H  I  S  *  Q  *  R  I  K  E  E  K  T  D  C  F  V  L  W  I  V  S  G  K  L  L  L  K  V  C  T  I  Y  Y  F  L  </first_frame>
            <second_frame>  P  P  L  I  F  Y  S  F  S  S  M  G  F  I  L  K  P  Q  I  F  L  F  K  S  V :   D  L  K  H  Q  S  H  G  D  G  V  *  P  A  Y  A  Q  L  E  L  *  *  L  L  L  E  I  Q  F  L  N  Q  E  Q  L  P  *  M  E  M  K  V  L  A  V  G  I  V  G  V  V  A  L  *  F  :  V  I  C  V  V  V  Q  E  N  G  K  L  *  T  E  N  E  L  K  T  F  M  S  S  L  S  A  P  I  V  T  :  D  E  G  N  *  Y  V  L  Y  V  *  E  L  V  Y  L  I  I  K  V  F  L  G  G  Q  T  Q  G  S  Y  L  T  R  C  I  M  D  D  C  C  Q  T  H  K  :  V  E  S  C  T  T  P  E  G  Q  *  E  E  T  Q  S  N  Y  G  C  N  N  Y  C  V  V  E  C  T  C  *  I  S  R  *  T  L  V  L  S  L  I  S  L  D  T  G  V  V  V  F  P  D  Y  H  R  P  L  H  H  S  G  K  K  W  E  V  V  S  A  T  *  *  S  *  H  I  N  Y  F  G  I  L  *  E  K  S  N  N  L  V  F  N  L  H  I  V  F  I  S  H  N  N  R  E  *  K  K  R  K  Q  T  V  L  Y  F  G  L  Y  L  E  N  C  Y  L  K  F  V  P  S  I  I  F  * </second_frame>
            <third_frame>   H  L  S  F  S  T  P  S  A  L  W  G  S  Y  L  N  P  K  S  S  S  L  S  Q   : *  I  S  N  I  S  L  T  E  M  V  S  D  L  P  M  L  N  W  S  S  D  N  C  F  W  K  S  N  F  *  T  K  S  N  C  L  R  W  K  *  K  S  W  L  S  E  L  W  G  *  W  R  Y  N  L :   *  Y  V  W  W  Y  R  K  M  E  S  S  K  Q  K  T  S  *  R  R  L  *  V  H  *  V  P  Q  L  L  R :   T  R  E  T  S  M  S  C  M  F  R  N  W  F  T  *  *  *  R  S  S  *  A  A  R  R  K  E  V  T  *  Q  D  V  *  W  T  T  V  A  K  L  I  R :   L  K  A  V  L  H  Q  K  D  N  E  K  R  L  K  V  T  M  D  V  T  T  I  V  L  L  S  V  P  V  K  S  L  D  E  L  S  F  S  P  *  S  L  L  I  P  G  *  *  Y  S  R  T  I  I  D  P  S  T  I  L  E  R  N  G  K  *  Y  L  P  H  D  R  V  S  I  S  I  I  S  E  Y  C  E  R  R  A  I  I  W  C  S  I  C  I  L  S  S  Y  L  I  T  I  E  N  K  R  R  E  N  R  L  F  C  T  L  D  C  I  W  K  I  V  T  *  S  L  Y  H  L  L  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63991" stop="63986"/>
                    <exon start="62110" stop="61945"/>
                    <exon start="60853" stop="60761"/>
                    <exon start="60472" stop="60342"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSRSQTSVSRRWCLTCLCSTGALITASGNPISEPRAIALDGNESPGCRNCGGSGAIICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62117" e_stop="61945"/>
            <exon e_start="60853" e_stop="60761"/>
            <exon e_start="60472" e_stop="60341"/>
            <exon e_start="60243" e_stop="59842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.954" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="62117" e_stop="61945" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60853" e_stop="60761" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60472" e_stop="60341" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.954">
            <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60243" e_stop="59842" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62117" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="59842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62075" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="59842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61965" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="59842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60368" stop="60341"/>
              <exon start="60243" stop="59976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT : GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG : GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG : GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</gDNA_template>
            <first_frame> G  T  E  I  S  N  I  S  L  T  E  M  V  S  D  L  P  M  L  N  W  S  S  D  N  C  F  W  K  S  N  F  *  T  K  S  N  C  L  R  W  K  *  K  S  W  L  S  E  L  W  G  *  W  R  Y  N  L :   *  Y  V  W  W  Y  R  K  M  E  S  S  K  Q  K  T  S  *  R  R  L  *  V  H  *  V  P  Q  L  L  R :   T  R  E  T  S  M  S  C  M  F  R  N  W  F  T  *  *  *  R  S  S  *  A  A  R  R  K  E  V  T  *  Q  D  V  *  W  T  T  V  A  K  L  I  R :   L  K  A  V  L  H  Q  K  D  N  E  K  R  L  K  V  T  M  D  V  T  T  I  V  L  L  S  V  P  V  K  S  L  D  E  L  S  F  S  P  *  S  L  L  I  P  G  *  *  Y  S  R  T  I  I  D  P  S  T  I  L  E  R  N  G  K  *  Y  L  P  H  D  R  V  S  I  S  I  I  S  E  Y  C  E  R  R  A  I  I  W  C  S  I  C  I  L  S  S  Y  L  I  T  I  E  N  K  R  R  E  N  R  L  F  C  T  L  D  C  I  W  K  I  V  T  *  S  L  Y  H  L  L  F  F   </first_frame>
            <second_frame>  E  Q  R  S  Q  T  S  V  S  R  R  W  C  L  T  C  L  C  S  T  G  A  L  I  T  A  S  G  N  P  I  S  E  P  R  A  I  A  L  D  G  N  E  S  P  G  C  R  N  C  G  G  S  G  A  I  I   : C  D  M  C  G  G  T  G  K  W  K  A  L  N  R  K  R  A  K  D  V  Y  E  F  T  E  C  P  N  C  Y   : G  R  G  K  L  V  C  P  V  C  L  G  T  G  L  P  N  N  K  G  L  L  R  R  P  D  A  R  K  L  L  D  K  M  Y  N  G  R  L  L  P  N  S  *   : G  *  K  L  Y  Y  T  R  R  T  M  R  R  D  S  K  *  L  W  M  *  Q  L  L  C  C  *  V  Y  L  L  N  L  S  M  N  S  R  S  L  P  D  L  S  *  Y  R  G  S  S  I  P  G  L  S  S  T  P  P  P  F  W  K  E  M  G  S  S  I  C  H  M  I  E  L  A  Y  Q  L  F  R  N  I  V  R  E  E  Q  *  F  G  V  Q  F  A  Y  C  L  H  I  S  *  Q  *  R  I  K  E  E  K  T  D  C  F  V  L  W  I  V  S  G  K  L  L  L  K  V  C  T  I  Y  Y  F  L  </second_frame>
            <third_frame>   N  R  D  L  K  H  Q  S  H  G  D  G  V  *  P  A  Y  A  Q  L  E  L  *  *  L  L  L  E  I  Q  F  L  N  Q  E  Q  L  P  *  M  E  M  K  V  L  A  V  G  I  V  G  V  V  A  L  *  F  :  V  I  C  V  V  V  Q  E  N  G  K  L  *  T  E  N  E  L  K  T  F  M  S  S  L  S  A  P  I  V  T  :  D  E  G  N  *  Y  V  L  Y  V  *  E  L  V  Y  L  I  I  K  V  F  L  G  G  Q  T  Q  G  S  Y  L  T  R  C  I  M  D  D  C  C  Q  T  H  K  :  V  E  S  C  T  T  P  E  G  Q  *  E  E  T  Q  S  N  Y  G  C  N  N  Y  C  V  V  E  C  T  C  *  I  S  R  *  T  L  V  L  S  L  I  S  L  D  T  G  V  V  V  F  P  D  Y  H  R  P  L  H  H  S  G  K  K  W  E  V  V  S  A  T  *  *  S  *  H  I  N  Y  F  G  I  L  *  E  K  S  N  N  L  V  F  N  L  H  I  V  F  I  S  H  N  N  R  E  *  K  K  R  K  Q  T  V  L  Y  F  G  L  Y  L  E  N  C  Y  L  K  F  V  P  S  I  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62116" stop="61945"/>
                    <exon start="60853" stop="60761"/>
                    <exon start="60472" stop="60342"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQRSQTSVSRRWCLTCLCSTGALITASGNPISEPRAIALDGNESPGCRNCGGSGAIICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="73507" PGL_stop="65201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73507" e_stop="72896"/>
            <exon e_start="71787" e_stop="71659"/>
            <exon e_start="71492" e_stop="71419"/>
            <exon e_start="71329" e_stop="71260"/>
            <exon e_start="70233" e_stop="70178"/>
            <exon e_start="69733" e_stop="69662"/>
            <exon e_start="69533" e_stop="69439"/>
            <exon e_start="69361" e_stop="69295"/>
            <exon e_start="69218" e_stop="69089"/>
            <exon e_start="68981" e_stop="68763"/>
            <exon e_start="68678" e_stop="68542"/>
            <exon e_start="67899" e_stop="67725"/>
            <exon e_start="67636" e_stop="67546"/>
            <exon e_start="66654" e_stop="66497"/>
            <exon e_start="65948" e_stop="65760"/>
            <exon e_start="65565" e_stop="65201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.969" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.511" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="73507" e_stop="72896" e_length="612"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72895" i_stop="71788" i_length="1108"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="71787" e_stop="71659" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71658" i_stop="71493" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71492" e_stop="71419" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.964">
            <gDNA_intron_boundary i_start="71418" i_stop="71330" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71329" e_stop="71260" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.511" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71259" i_stop="70234" i_length="1026"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70233" e_stop="70178" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.960">
            <gDNA_intron_boundary i_start="70177" i_stop="69734" i_length="444"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69733" e_stop="69662" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.938" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69661" i_stop="69534" i_length="128"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69533" e_stop="69439" e_length="95"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69438" i_stop="69362" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69361" e_stop="69295" e_length="67"/>
          </exon>
          <intron i_serial="8" don_prob="0.895" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69294" i_stop="69219" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69218" e_stop="69089" e_length="130"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="69088" i_stop="68982" i_length="107"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68981" e_stop="68763" e_length="219"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="68762" i_stop="68679" i_length="84"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="68678" e_stop="68542" e_length="137"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68541" i_stop="67900" i_length="642"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="67899" e_stop="67725" e_length="175"/>
          </exon>
          <intron i_serial="12" don_prob="0.957" acc_prob="0.984">
            <gDNA_intron_boundary i_start="67724" i_stop="67637" i_length="88"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="67636" e_stop="67546" e_length="91"/>
          </exon>
          <intron i_serial="13" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67545" i_stop="66655" i_length="891"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="66654" e_stop="66497" e_length="158"/>
          </exon>
          <intron i_serial="14" don_prob="0.993" acc_prob="0.922">
            <gDNA_intron_boundary i_start="66496" i_stop="65949" i_length="548"/>
          </intron>
          <exon e_serial="15" e_score="0.995">
            <gDNA_exon_boundary e_start="65948" e_stop="65760" e_length="189"/>
          </exon>
          <intron i_serial="15" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65759" i_stop="65566" i_length="194"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="65565" e_stop="65201" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73507" stop="73003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73506" stop="72934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72962" stop="72896"/>
              <exon start="71787" stop="71659"/>
              <exon start="71492" stop="71419"/>
              <exon start="71329" stop="71260"/>
              <exon start="70233" stop="70178"/>
              <exon start="69733" stop="69662"/>
              <exon start="69533" stop="69439"/>
              <exon start="69361" stop="69310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72929" stop="72896"/>
              <exon start="71787" stop="71659"/>
              <exon start="71492" stop="71419"/>
              <exon start="71329" stop="71260"/>
              <exon start="70233" stop="70178"/>
              <exon start="69733" stop="69662"/>
              <exon start="69533" stop="69439"/>
              <exon start="69361" stop="69347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71773" stop="71659"/>
              <exon start="71492" stop="71419"/>
              <exon start="71329" stop="71260"/>
              <exon start="70233" stop="70178"/>
              <exon start="69733" stop="69662"/>
              <exon start="69533" stop="69439"/>
              <exon start="69361" stop="69310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71685" stop="71659"/>
              <exon start="71492" stop="71419"/>
              <exon start="71329" stop="71260"/>
              <exon start="70233" stop="70178"/>
              <exon start="69733" stop="69662"/>
              <exon start="69533" stop="69439"/>
              <exon start="69361" stop="69295"/>
              <exon start="69218" stop="69089"/>
              <exon start="68981" stop="68858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71488" stop="71419"/>
              <exon start="71329" stop="71260"/>
              <exon start="70233" stop="70178"/>
              <exon start="69733" stop="69662"/>
              <exon start="69533" stop="69439"/>
              <exon start="69361" stop="69295"/>
              <exon start="69218" stop="69089"/>
              <exon start="68981" stop="68797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69733" stop="69662"/>
              <exon start="69533" stop="69439"/>
              <exon start="69361" stop="69295"/>
              <exon start="69218" stop="69089"/>
              <exon start="68981" stop="68923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69526" stop="69439"/>
              <exon start="69361" stop="69295"/>
              <exon start="69218" stop="69089"/>
              <exon start="68981" stop="68763"/>
              <exon start="68678" stop="68542"/>
              <exon start="67899" stop="67856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69313" stop="69295"/>
              <exon start="69218" stop="69089"/>
              <exon start="68981" stop="68763"/>
              <exon start="68678" stop="68542"/>
              <exon start="67899" stop="67725"/>
              <exon start="67636" stop="67615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68769" stop="68763"/>
              <exon start="68678" stop="68542"/>
              <exon start="67899" stop="67725"/>
              <exon start="67636" stop="67546"/>
              <exon start="66654" stop="66497"/>
              <exon start="65948" stop="65931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66568" stop="66497"/>
              <exon start="65948" stop="65760"/>
              <exon start="65565" stop="65242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66568" stop="66497"/>
              <exon start="65948" stop="65760"/>
              <exon start="65565" stop="65242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66568" stop="66497"/>
              <exon start="65948" stop="65760"/>
              <exon start="65565" stop="65266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66549" stop="66497"/>
              <exon start="65948" stop="65760"/>
              <exon start="65565" stop="65461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65888" stop="65760"/>
              <exon start="65565" stop="65201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCCCACTCTCTCTCTAAAAGTAGTGCTTTTTCATCGACATTCACGCGGATTACAGATCGTTTACAGTATTTGAACAAACCCTAGCATCAAAAGTTTGTTTTTTTTTCTTCCAGTTTTTGAATTTGGTTTCAGAAATTCAATCGAGTTTGAGTTTGTTGTAGAAACGGATTTGGGGTTGTTTTTGTATGTTTAGGGTTTTGATTATGATGATGAAAGTATAAGTGATGTGTTGCAATCGGAATCGGGTTGTTGTTTTTGTTCAATTTTATATGGGTAAAAAAGAATGCCGGAGTTGCGGAGTGGGGTATGTCGGCGCCGTGCTCCTCCTCCAGTAGTTGAAACAAAACCCGAAACGAAGAAAAGGGTTGGTGGCGGTGGTGTTGGTGGTCGGAGTTATATAAAGACTCGTGCTGCTAAGGCTAAGGCAGCGGAAGCAGAAGCAAAGCTTGTGGAAGTAGAGGAAGAGGAAGTGAAGGAGAACGAAAACGAGAGAGTAGAGGGAGAAGAAGTTGAAGAAGAGCATAAGATGGGTGATGAGAGTGGTGGTTTGAGTGCTAATAATAAAGTGACTGCACAGGAAGATGAAAGTACTTCTCTTTTTCCTGATCAG : GTGCAAGTAGGAGGATCTCCAGTTTATAAGGTTGAAAGGAAGCTAGGTAAAGGTGGTTTTGGACAGGTGTTTTTGGGTCGCCGTCTTACCGGTGGAAATGAACGTGCTAGTGGTCCCTTGGCTTTGGAG : GTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAA : TACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATG : GTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATC : AATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGG : TTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGG : CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAG : AGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAG : GGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGCTATAAGGCCGATCAACACAGATGGTGCTCAAAAG : GCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAG : GTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAG : GAGTGGATTATGGAGCAATGGGAGAAAAACTATTATATTAGTTCTCTTGCTGGTGGCATAAATGGAGCCTCTTTAGTAGTAATGTCAAAAG : GCACACAGTTCACTCAACAGTCTTATAAAGTCAGTGAGTCATTTCCCTTCAAGTGGATAAGCAAGAAATGGAAAGAAGGGTTCCATGTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAG : GTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAG : GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAAATTTCTGGGGAAAGTTTTAATGTTATCTTTACCTATCGATT</gDNA_template>
            <first_frame> S  P  T  L  S  L  K  V  V  L  F  H  R  H  S  R  G  L  Q  I  V  Y  S  I  *  T  N  P  S  I  K  S  L  F  F  F  L  P  V  F  E  F  G  F  R  N  S  I  E  F  E  F  V  V  E  T  D  L  G  L  F  L  Y  V  *  G  F  D  Y  D  D  E  S  I  S  D  V  L  Q  S  E  S  G  C  C  F  C  S  I  L  Y  G  *  K  R  M  P  E  L  R  S  G  V  C  R  R  R  A  P  P  P  V  V  E  T  K  P  E  T  K  K  R  V  G  G  G  G  V  G  G  R  S  Y  I  K  T  R  A  A  K  A  K  A  A  E  A  E  A  K  L  V  E  V  E  E  E  E  V  K  E  N  E  N  E  R  V  E  G  E  E  V  E  E  E  H  K  M  G  D  E  S  G  G  L  S  A  N  N  K  V  T  A  Q  E  D  E  S  T  S  L  F  P  D  Q  :  V  Q  V  G  G  S  P  V  Y  K  V  E  R  K  L  G  K  G  G  F  G  Q  V  F  L  G  R  R  L  T  G  G  N  E  R  A  S  G  P  L  A  L  E  :  V  A  L  K  F  E  H  R  N  S  K  G  C  S  Y  G  P  P  Y  E  W  Q  V  Y  N :   T  L  G  G  S  H  G  V  P  R  V  H  Y  K  G  R  A  G  E  Y  Y  V  M  :  V  M  D  M  L  G  P  S  L  W  D  V  W  N  S  S  G  Q  S :   M  S  A  E  M  V  A  C  I  A  V  E  S  L  S  I  L  E  K  L  H  A  K  G :   Y  V  H  G  D  V  K  P  E  N  F  L  L  G  Q  P  S  T  P  Q  E  K  K  L  F  L  V  D  L  G  L   : A  T  K  W  K  D  T  S  K  G  Q  H  V  G  Y  D  Q  R  P  D  T  F  R :   G  T  V  R  Y  A  S  A  H  A  H  L  G  R  T  A  S  R  R  D  D  L  E  S  L  A  Y  T  L  I  F  L  H  R  G  R  L  P  W  Q  G  Y  Q  :  G  D  N  K  S  F  L  V  C  K  K  K  M  A  T  S  P  E  M  L  C  C  F  C  P  A  P  F  R  E  F  L  D  T  V  I  N  M  K  F  D  E  E  P  K  Y  S  K  L  I  S  L  F  G  S  L  L  G  A  D  P  A  I  R  P  I  N  T  D  G  A  Q  K  :  A  I  Q  V  G  Q  K  R  G  R  L  T  L  N  E  E  E  E  Q  P  Q  K  K  I  R  I  G  V  P  A  T  Q  W  I  S  I  Y  N  A  R  K  P  M  K  Q  R :   Y  H  Y  N  V  A  D  T  R  L  A  Q  H  V  E  K  G  S  V  D  G  L  S  I  S  C  V  A  S  C  S  S  L  W  A  I  I  M  D  A  G  T  N  F  T  S  Q  V  Y  E  L  S  P  F  F  L  H  K  :  E  W  I  M  E  Q  W  E  K  N  Y  Y  I  S  S  L  A  G  G  I  N  G  A  S  L  V  V  M  S  K   : G  T  Q  F  T  Q  Q  S  Y  K  V  S  E  S  F  P  F  K  W  I  S  K  K  W  K  E  G  F  H  V  T  S  M  A  T  A  N  T  R  W  A  V  V  M  S  R  N  S  G  F  S  D  Q  :  V  V  E  L  D  F  L  Y  P  S  E  G  I  H  K  R  W  D  N  G  Y  R  I  T  A  T  A  A  T  P  D  Q  A  A  L  I  L  S  V  P  R  R  R  P  G  D  E  T  Q  E  T  L  R  T  S  Q  F  P  S  T  H  V  K  :  E  K  W  G  K  N  L  Y  L  S  C  L  C  Y  G  R  T  V  S  *  N  K  S  *  P  N  C  C  N  P  T  F  G  S  Y  I  L  L  F  H  C  P  S  V  N  G  W  W  W  W  *  E  V  R  C  V  L  E  C  Y  A  I  G  E  L  L  V  C  L  K  I  M  K  M  L  *  L  L  C  V  T  A  F  C  L  *  C  C  C  Y  P  T  S  T  G  T  I  V  L  A  A  I  I  V  S  C  T  Q  I  S  G  E  S  F  N  V  I  F  T  Y  R   </first_frame>
            <second_frame>  P  P  L  S  L  *  K  *  C  F  F  I  D  I  H  A  D  Y  R  S  F  T  V  F  E  Q  T  L  A  S  K  V  C  F  F  F  F  Q  F  L  N  L  V  S  E  I  Q  S  S  L  S  L  L  *  K  R  I  W  G  C  F  C  M  F  R  V  L  I  M  M  M  K  V  *  V  M  C  C  N  R  N  R  V  V  V  F  V  Q  F  Y  M  G  K  K  E  C  R  S  C  G  V  G  Y  V  G  A  V  L  L  L  Q  *  L  K  Q  N  P  K  R  R  K  G  L  V  A  V  V  L  V  V  G  V  I  *  R  L  V  L  L  R  L  R  Q  R  K  Q  K  Q  S  L  W  K  *  R  K  R  K  *  R  R  T  K  T  R  E  *  R  E  K  K  L  K  K  S  I  R  W  V  M  R  V  V  V  *  V  L  I  I  K  *  L  H  R  K  M  K  V  L  L  F  F  L  I  R :   C  K  *  E  D  L  Q  F  I  R  L  K  G  S  *  V  K  V  V  L  D  R  C  F  W  V  A  V  L  P  V  E  M  N  V  L  V  V  P  W  L  W  R :   S  H  *  S  L  S  I  E  T  A  K  A  V  A  M  A  L  H  M  S  G  R  F  T   : I  L  L  E  A  A  M  E  C  L  E  C  I  I  K  D  G  Q  E  S  I  M  *  W :   L  W  T  C  *  A  L  A  Y  G  M  Y  G  I  P  L  G  N   : Q  C  Q  Q  K  W  W  L  V  L  Q  L  S  H  C  R  F  W  K  S  C  M  R  K   : V  M  F  M  E  M  *  S  Q  K  T  F  Y  L  A  S  H  Q  H  H  K  R  R  S  C  S  *  L  T  W  D  W  :  P  Q  S  G  K  T  L  Q  K  G  S  M  S  D  M  I  S  V  L  T  R  S   : E  G  L  F  A  M  Q  V  H  M  L  T  W  E  G  L  P  V  E  E  M  I  W  N  H  L  H  I  H  *  F  F  F  I  E  A  G  S  H  G  R  A  I  R :   V  I  T  N  H  F  *  S  V  K  K  R  W  Q  H  L  Q  R  C  F  V  A  S  A  L  H  L  L  E  N  F  L  I  Q  *  L  T  *  S  L  M  K  N  R  N  I  Q  S  *  S  L  Y  L  G  A  C  L  E  L  I  L  L  *  G  R  S  T  Q  M  V  L  K  R :   L  F  K  L  A  K  S  G  G  D  *  L  *  M  R  K  K  S  S  L  R  R  K  F  E  S  V  F  L  R  R  N  G  F  Q  Y  I  M  P  E  S  R  *  N  R   : G  T  I  T  M  *  Q  T  Q  D  W  H  S  M  W  R  K  G  L  W  M  V  C  L  *  V  V  *  H  H  V  L  A  Y  G  L  S  S  W  M  L  E  R  T  S  L  A  K  F  M  S  C  H  L  S  S  Y  T  R :   S  G  L  W  S  N  G  R  K  T  I  I  L  V  L  L  L  V  A  *  M  E  P  L  *  *  *  C  Q  K  :  A  H  S  S  L  N  S  L  I  K  S  V  S  H  F  P  S  S  G  *  A  R  N  G  K  K  G  S  M  *  P  P  W  Q  L  L  T  L  G  G  L  L  L  C  H  A  I  Q  A  S  V  I  R :   W  *  S  L  I  S  F  I  L  V  R  V  F  I  R  G  G  I  M  V  I  V  L  R  Q  Q  L  L  R  Q  T  K  L  L  L  S  *  V  Y  L  A  E  D  L  V  M  R  L  K  K  L  C  E  H  L  S  F  P  A  H  M  L  R :   K  N  G  E  R  I  C  I  F  L  V  Y  A  M  D  A  L  Y  L  K  T  N  R  D  Q  I  V  V  T  R  H  L  D  L  I  S  C  C  F  I  V  Q  V  *  M  D  G  G  G  G  K  K  L  D  V  S  *  N  V  M  L  *  E  N  F  *  F  V  L  K  L  *  K  C  C  S  C  S  V  *  Q  L  S  A  Y  D  V  V  V  I  L  L  V  Q  E  Q  L  F  L  L  Q  *  L  F  R  V  L  K  F  L  G  K  V  L  M  L  S  L  P  I  D  </second_frame>
            <third_frame>   P  H  S  L  S  K  S  S  A  F  S  S  T  F  T  R  I  T  D  R  L  Q  Y  L  N  K  P  *  H  Q  K  F  V  F  F  S  S  S  F  *  I  W  F  Q  K  F  N  R  V  *  V  C  C  R  N  G  F  G  V  V  F  V  C  L  G  F  *  L  *  *  *  K  Y  K  *  C  V  A  I  G  I  G  L  L  F  L  F  N  F  I  W  V  K  K  N  A  G  V  A  E  W  G  M  S  A  P  C  S  S  S  S  S  *  N  K  T  R  N  E  E  K  G  W  W  R  W  C  W  W  S  E  L  Y  K  D  S  C  C  *  G  *  G  S  G  S  R  S  K  A  C  G  S  R  G  R  G  S  E  G  E  R  K  R  E  S  R  G  R  R  S  *  R  R  A  *  D  G  *  *  E  W  W  F  E  C  *  *  *  S  D  C  T  G  R  *  K  Y  F  S  F  S  *  S   : G  A  S  R  R  I  S  S  L  *  G  *  K  E  A  R  *  R  W  F  W  T  G  V  F  G  S  P  S  Y  R  W  K  *  T  C  *  W  S  L  G  F  G   : G  R  T  E  V  *  A  S  K  Q  Q  R  L  *  L  W  P  S  I  *  V  A  G  L  Q  :  Y  S  W  R  Q  P  W  S  A  *  S  A  L  *  R  T  G  R  R  V  L  C  D   : G  Y  G  H  A  R  P  *  L  M  G  C  M  E  F  L  W  A  I  :  N  V  S  R  N  G  G  L  Y  C  S  *  V  I  V  D  F  G  K  A  A  C  E  R  :  L  C  S  W  R  C  E  A  R  K  L  F  T  W  P  A  I  N  T  T  R  E  E  V  V  P  S  *  L  G  T  G :   H  K  V  E  R  H  F  K  R  A  A  C  R  I  *  S  A  S  *  H  V  Q  :  R  D  C  S  L  C  K  C  T  C  S  L  G  K  D  C  Q  *  K  R  *  F  G  I  T  C  I  Y  T  N  F  S  S  S  R  Q  A  P  M  A  G  L  S   : G  *  *  Q  I  I  F  S  L  *  K  K  D  G  N  I  S  R  D  A  L  L  L  L  P  C  T  F  *  R  I  S  *  Y  S  N  *  H  E  V  *  *  R  T  E  I  F  K  V  N  L  F  I  W  E  L  A  W  S  *  S  C  Y  K  A  D  Q  H  R  W  C  S  K   : G  Y  S  S  W  P  K  A  G  E  T  N  F  K  *  G  R  R  A  A  S  E  E  N  S  N  R  C  S  C  D  A  M  D  F  N  I  *  C  Q  K  A  D  E  T  E  :  V  P  L  Q  C  S  R  H  K  I  G  T  A  C  G  E  R  V  C  G  W  F  V  Y  K  L  C  S  I  M  F  *  L  M  G  Y  H  H  G  C  W  N  E  L  H  *  P  S  L  *  A  V  T  F  L  L  T  Q   : G  V  D  Y  G  A  M  G  E  K  L  L  Y  *  F  S  C  W  W  H  K  W  S  L  F  S  S  N  V  K  R :   H  T  V  H  S  T  V  L  *  S  Q  *  V  I  S  L  Q  V  D  K  Q  E  M  E  R  R  V  P  C  D  L  H  G  N  C  *  H  *  V  G  C  C  Y  V  T  Q  F  R  L  Q  *  S   : G  G  R  A  *  F  P  L  S  *  *  G  Y  S  *  E  V  G  *  W  L  S  Y  Y  G  N  S  C  Y  A  R  P  S  C  S  Y  P  E  C  T  S  P  K  T  W  *  *  D  S  R  N  S  A  N  I  S  V  S  Q  H  T  C  *   : G  K  M  G  K  E  S  V  S  F  L  S  M  L  W  T  H  C  I  L  K  Q  I  V  T  K  L  L  *  P  D  I  W  I  L  Y  L  V  V  S  L  S  K  C  K  W  M  V  V  V  V  R  S  *  M  C  L  R  M  L  C  Y  R  R  T  F  S  L  S  *  N  Y  E  N  V  V  A  A  L  C  N  S  F  L  L  M  M  L  L  L  S  Y  *  Y  R  N  N  C  S  C  C  N  N  C  F  V  Y  S  N  F  W  G  K  F  *  C  Y  L  Y  L  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73228" stop="72896"/>
                    <exon start="71787" stop="71659"/>
                    <exon start="71492" stop="71419"/>
                    <exon start="71329" stop="71260"/>
                    <exon start="70233" stop="70178"/>
                    <exon start="69733" stop="69662"/>
                    <exon start="69533" stop="69439"/>
                    <exon start="69361" stop="69295"/>
                    <exon start="69218" stop="69089"/>
                    <exon start="68981" stop="68763"/>
                    <exon start="68678" stop="68542"/>
                    <exon start="67899" stop="67725"/>
                    <exon start="67636" stop="67546"/>
                    <exon start="66654" stop="66497"/>
                    <exon start="65948" stop="65760"/>
                    <exon start="65565" stop="65506"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2052</number_coding_nucleotides>
                  <number_encoded_amino_acids>684</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRMPELRSGVCRRRAPPPVVETKPETKKRVGGGGVGGRSYIKTRAAKAKAAEAEAKLVEVEEEEVKENENERVEGEEVEEEHKMGDESGGLSANNKVTAQEDESTSLFPDQVQVGGSPVYKVERKLGKGGFGQVFLGRRLTGGNERASGPLALEVALKFEHRNSKGCSYGPPYEWQVYNTLGGSHGVPRVHYKGRAGEYYVMVMDMLGPSLWDVWNSSGQSMSAEMVACIAVESLSILEKLHAKGYVHGDVKPENFLLGQPSTPQEKKLFLVDLGLATKWKDTSKGQHVGYDQRPDTFRGTVRYASAHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGYQGDNKSFLVCKKKMATSPEMLCCFCPAPFREFLDTVINMKFDEEPKYSKLISLFGSLLGADPAIRPINTDGAQKAIQVGQKRGRLTLNEEEEQPQKKIRIGVPATQWISIYNARKPMKQRYHYNVADTRLAQHVEKGSVDGLSISCVASCSSLWAIIMDAGTNFTSQVYELSPFFLHKEWIMEQWEKNYYISSLAGGINGASLVVMSKGTQFTQQSYKVSESFPFKWISKKWKEGFHVTSMATANTRWAVVMSRNSGFSDQVVELDFLYPSEGIHKRWDNGYRITATAATPDQAALILSVPRRRPGDETQETLRTSQFPSTHVKEKWGKNLYLSCLCYGRTVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 234 chains have been computed
$ 
$ memory statistics:
$ 354976 bytes spliced alignments in total
$ 164 spliced alignments have been stored
$ 2164 bytes was the average size of a spliced alignment
$ 26824 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1788 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 267 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:33:02
-->
