<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:33:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG301-R" ref_strand="+" ref_description="TG301-R">
      <seq>tattctgaatctggaaaattgttctgccaatttctttgaccaaccagacaatacccttttaatctaagaccctaattacaaggttactgacaatcacttttgacaccaatgtctttgataaagcactgttaaaattttcagatgtgctttaatactctgcatcctttttaggaactcttttgtctactttcactttttaaaagaaagaacttaaggagaggacatacttattatttttgcattttctatatcaagtaaagtgagaagacttccattaatttgcatccagcggatgctaatggctacaacatagctactttaagcaaataggtgatttgatcaagattctttacgttttcaagatcacagcaacaaaaagggttccttaaaaacctagcctttactaacgtttataagagggataattaagcaaaaggaccgtcataaatcctttctcaaaataccacattcatcagtttttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="4204" stop="5288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4504" g_stop="4988" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="TG301-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="TG301-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4504" e_stop="4988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCA</genome_strand>
        <mrna_strand>TATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG301-F" ref_strand="+" ref_description="TG301-F">
      <seq>ttgtaacttactaaattaagagctcaggatgaacagaacacgaattattagttcatattaagcaagaaacttaaaaaacttcaccttctccaacatactctacaacaaactcttttgtcttgatatcttcatctgccacaatcccagtgccacatttctcagtctgcacgttatgagtcaacaaaactttagttttttagatgattattgcttggttttcaaaagaaacgaaaataagaagaatacaaaataaccaacatttctttacttcttcaccagatacacaactgaattaaatgcaaaaatagatatgaaaaatgttaccagcctgcacttttgatgcagattgtacttgtttgcaattgaaaagtgtcgaatggtcatttttggtaaaaactgatgaatgtggtattttgagaaaggatttatgacggtccttttgcttaattatccctcttataaacgttagtaaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="5675" stop="4600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5375" g_stop="4900" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="TG301-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="TG301-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5375" e_stop="4900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAACTTACTAAATTAAGAGCTCAGGATGAACAGAACACGAATTATTAGTTCATATTAAGCAAGAAACTTAAAAAACTTCACCTTCTCCAACATACTCTACAACAAACTCTTTTGTCTTGATATCTTCATCTGCCACAATCCCAGTGCCACATTTCTCAGTCTGCACGTTATGAGTCAACAAAACTTTAGTTTTTTAGATGATTATTGCTTGGTTTTCAAAAGAAACGAAAATAAGAAGAATACAAAATAACCAACATTTCTTTACTTCTTCACCAGATACACAACTGAATTAAATGCAAAAATAGATATGAAAAATGTTACCAGCCTGCACTTTTGATGCAGATTGTACTTGTTTGCAATTGAAAAGTGTCGAATGGTCATTTTTGGTAAAAACTGATGAATGTGGTATTTTGAGAAAGGATTTATGACGGTCCTTTTGCTTAATTATCCCTCTTATAAACGTTAGTAAAGGC</genome_strand>
        <mrna_strand>TTGTAACTTACTAAATTAAGAGCTCAGGATGAACAGAACACGAATTATTAGTTCATATTAAGCAAGAAACTTAAAAAACTTCACCTTCTCCAACATACTCTACAACAAACTCTTTTGTCTTGATATCTTCATCTGCCACAATCCCAGTGCCACATTTCTCAGTCTGCACGTTATGAGTCAACAAAACTTTAGTTTTTTAGATGATTATTGCTTGGTTTTCAAAAGAAACGAAAATAAGAAGAATACAAAATAACCAACATTTCTTTACTTCTTCACCAGATACACAACTGAATTAAATGCAAAAATAGATATGAAAAATGTTACCAGCCTGCACTTTTGATGCAGATTGTACTTGTTTGCAATTGAAAAGTGTCGAATGGTCATTTTTGGTAAAAACTGATGAATGTGGTATTTTGAGAAAGGATTTATGACGGTCCTTTTGCTTAATTATCCCTCTTATAAACGTTAGTAAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g58060" ref_strand="+" ref_description="C2_At3g58060">
      <seq>gttatatactatcatgataacggccacagtggtaaaacttgccctttggctatactgcagaagctcaggaaacaacattgtccgtgcctatgcaaaggatcattattttgacgtggttactaatgtagtcggactggtagcagctatacttggcgacaaattctactggtggattgatcctgttggtgccattattcttgcactttataccatcaccaactggtcaggaactgttttagaaaatgcagtgtcactggtgggacagtcagccccgcctgaatacttgcaaaagttaacgtatcttgttataagacaccctcaagtgaagcgtattgatacagttcgagcctacacatttggtgtcttgtactttgtagaggttgatattgaactcccagaagatttgcctttgaaagaagcacatgctatcggagaaactctacaaataaagctcgagaaactccctgaagttgaacgagcattcgttcatctcgattttgaatgtgaacacaaaccagagcactctgttctcagcaggctgccaaacactgaaccttaggctcatggttacgttatgcccggataacggaggagggttgttattactttcgacgattcggggttttgttgtttttttgataaacactttaactatataaatgtgtatattcatatgatccagcataagggattgttgaaagagaggatgaagaaaacttggatttatttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="+" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="50674" stop="52320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50974" g_stop="51070" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51071" i_stop="51153" i_length="83">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.588" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51154" g_stop="51304" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="248" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51305" i_stop="51444" i_length="140">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51445" g_stop="51575" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="379" r_length="131" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51576" i_stop="51662" i_length="87">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51663" g_stop="52020" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="733" r_length="354" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="+" ref_id="C2_At3g58060" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g58060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50974" e_stop="51070"/>
          <exon e_start="51154" e_stop="51304"/>
          <exon e_start="51445" e_stop="51575"/>
          <exon e_start="51663" e_stop="52020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATATACTATCATGATAACGGCCACAGTAGTAAAACTTGCCCTTTGGTTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTACGCAAAGGTGTGTACTGTATCTTCGCGTTCTATTTTTGGCATCGTTATCCTTGTAGTCTAGACTCGTAACTTGAAGATACCTTTCGACAGGATCACTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTGTACTTGGCGATAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATGCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAACGCAGGTATCGTCTCATTCCTGCACAACTTTAGTTTGCATCGATAGCCTGGTTGAAAAACGGAGTGTTCTACTAGAAGATTCTGTTAGTTTTGTTTCGTCATTATACTATGTTTGATTCCATACTGAACGACGTTCTTCATGTAGTGTCACTAGTGGGACAATCAGCCCCACCCGAATACTTGCAAAAGTTAACGTATCTTGTGATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTCGTAGAGGTCAGTCTCTGAAAAAACCATCTATAATAGCACACGAATGGTTCTTCTATCGATGATTTTGAGACTCGTTTGCTTACTGTAACGTAGGTAGATATTGAACTCCCGGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAACTCGAAAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTACCAAACACTGAACCTTAGGTTCATGTTTACGTTTAAGCCCGGATAAAGGAAGAGGGTTGTTATTATTATCGACGATTCGGGGTTTTGTTGTTTTTTTTTACACACATTTTAACTATATAAATGTGTATATTCATATGATCCAGCATAAGGGATTGTTGAAAAGAGAGGATATCAAGAACATGGATTTATTTTCAGA</genome_strand>
        <mrna_strand>GTTATATACTATCATGATAACGGCCACAGTGGTAAAACTTGCCCTTTGGCTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTATGCAAAG...................................................................................GATCATTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTATACTTGGCGACAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATTCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAATGCAG............................................................................................................................................TGTCACTGGTGGGACAGTCAGCCCCGCCTGAATACTTGCAAAAGTTAACGTATCTTGTTATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTTGTAGAG.......................................................................................GTTGATATTGAACTCCCAGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAGCTCGAGAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGCTGCCAAACACTGAACCTTAGGCTCATGGTTACG-TTATGCCCGGATAACGGAGGAGGGTTGTTATTACTTTCGACGATTCGGGGTTTTGTTG-TTTTTTTGATAAACACTTTAACTATATAAATGTGTATATTCATATGATCCAGCATAAGGGATTGTTG-AAAGAGAGGATGAAGAAAACTTGGATTTA-TTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At2g34860" ref_strand="+" ref_description="C2_At2g34860">
      <seq>aaaaaagagagagagatggcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattcccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcatatcaattatttcggaatattgtgagagaagagcaataatttggtgttcaatttgcatattgtcttcatatctcataacaatagagaataaaagaagagaaaacagactgttttgtactttggattgtatctggaaaattgttacttaaagtttgtaccatctattattttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64382" stop="59541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64082" g_stop="63986" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62829" g_stop="62726" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="201" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="367" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="460" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60472" g_stop="60341" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="592" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60243" g_stop="59842" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="994" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="995" polyA_stop="1005"/>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="C2_At2g34860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>994</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At2g34860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64082" e_stop="63986"/>
          <exon e_start="62829" e_stop="62726"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60341"/>
          <exon e_start="60243" e_stop="59842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</genome_strand>
        <mrna_strand>AAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0309" ref_strand="+" ref_description="T0309">
      <seq>aaaagagagagagatggcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0124N23-QbWiT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0124N23.1" temp_strand="-" temp_description="C01HBa0124N23.1  AC238907.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0124N23 upload_account_name:manual">
        <position start="64380" stop="59898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64080" g_stop="63986" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62829" g_stop="62726" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="199" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62110" g_stop="61945" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="365" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60761" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="458" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60472" g_stop="60341" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="590" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60243" g_stop="60198" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="636" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0124N23.1" gen_strand="-" ref_id="T0309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0124N23.1" gen_strand="-"/>
        <rDNA rDNA_id="T0309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64080" e_stop="63986"/>
          <exon e_start="62829" e_stop="62726"/>
          <exon e_start="62110" e_stop="61945"/>
          <exon e_start="60853" e_stop="60761"/>
          <exon e_start="60472" e_stop="60341"/>
          <exon e_start="60243" e_stop="60198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAA</genome_strand>
        <mrna_strand>AAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4504" PGL_stop="4988"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4504" e_stop="4988"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4504" e_stop="4988" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4504" stop="4988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG301-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCA</gDNA_template>
            <first_frame> Y  S  E  S  G  K  L  F  C  Q  F  L  *  P  T  R  Q  Y  P  F  N  L  R  P  *  L  Q  G  Y  *  Q  S  L  L  T  P  M  S  L  I  K  H  C  *  N  F  Q  M  C  F  N  T  L  H  P  F  *  E  L  F  C  L  L  S  L  F  K  R  K  N  L  R  R  G  H  T  Y  Y  F  C  I  F  Y  I  K  *  S  E  K  T  S  I  N  L  H  P  A  D  A  N  G  Y  N  I  A  T  L  S  K  *  V  I  *  S  R  F  F  T  F  S  R  S  Q  Q  Q  K  G  F  L  K  N  L  A  F  T  N  V  Y  K  R  D  N  *  A  K  G  P  S  *  I  L  S  Q  N  T  T  F  I  S  F  Y   </first_frame>
            <second_frame>  I  L  N  L  E  N  C  S  A  N  F  F  D  Q  P  D  N  T  L  L  I  *  D  P  N  Y  K  V  T  D  N  H  F  *  H  Q  C  L  *  *  S  T  V  K  I  F  R  C  A  L  I  L  C  I  L  F  R  N  S  F  V  Y  F  H  F  L  K  E  R  T  *  G  E  D  I  L  I  I  F  A  F  S  I  S  S  K  V  R  R  L  P  L  I  C  I  Q  R  M  L  M  A  T  T  *  L  L  *  A  N  R  *  F  D  Q  D  S  L  R  F  Q  D  H  S  N  K  K  G  S  L  K  T  *  P  L  L  T  F  I  R  G  I  I  K  Q  K  D  R  H  K  S  F  L  K  I  P  H  S  S  V  F  T  </second_frame>
            <third_frame>   F  *  I  W  K  I  V  L  P  I  S  L  T  N  Q  T  I  P  F  *  S  K  T  L  I  T  R  L  L  T  I  T  F  D  T  N  V  F  D  K  A  L  L  K  F  S  D  V  L  *  Y  S  A  S  F  L  G  T  L  L  S  T  F  T  F  *  K  K  E  L  K  E  R  T  Y  L  L  F  L  H  F  L  Y  Q  V  K  *  E  D  F  H  *  F  A  S  S  G  C  *  W  L  Q  H  S  Y  F  K  Q  I  G  D  L  I  K  I  L  Y  V  F  K  I  T  A  T  K  R  V  P  *  K  P  S  L  Y  *  R  L  *  E  G  *  L  S  K  R  T  V  I  N  P  F  S  K  Y  H  I  H  Q  F  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0124N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5375" PGL_stop="4900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5375" e_stop="4900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5375" e_stop="4900" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5375" stop="4900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG301-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTAACTTACTAAATTAAGAGCTCAGGATGAACAGAACACGAATTATTAGTTCATATTAAGCAAGAAACTTAAAAAACTTCACCTTCTCCAACATACTCTACAACAAACTCTTTTGTCTTGATATCTTCATCTGCCACAATCCCAGTGCCACATTTCTCAGTCTGCACGTTATGAGTCAACAAAACTTTAGTTTTTTAGATGATTATTGCTTGGTTTTCAAAAGAAACGAAAATAAGAAGAATACAAAATAACCAACATTTCTTTACTTCTTCACCAGATACACAACTGAATTAAATGCAAAAATAGATATGAAAAATGTTACCAGCCTGCACTTTTGATGCAGATTGTACTTGTTTGCAATTGAAAAGTGTCGAATGGTCATTTTTGGTAAAAACTGATGAATGTGGTATTTTGAGAAAGGATTTATGACGGTCCTTTTGCTTAATTATCCCTCTTATAAACGTTAGTAAAGGC</gDNA_template>
            <first_frame> L  *  L  T  K  L  R  A  Q  D  E  Q  N  T  N  Y  *  F  I  L  S  K  K  L  K  K  L  H  L  L  Q  H  T  L  Q  Q  T  L  L  S  *  Y  L  H  L  P  Q  S  Q  C  H  I  S  Q  S  A  R  Y  E  S  T  K  L  *  F  F  R  *  L  L  L  G  F  Q  K  K  R  K  *  E  E  Y  K  I  T  N  I  S  L  L  L  H  Q  I  H  N  *  I  K  C  K  N  R  Y  E  K  C  Y  Q  P  A  L  L  M  Q  I  V  L  V  C  N  *  K  V  S  N  G  H  F  W  *  K  L  M  N  V  V  F  *  E  R  I  Y  D  G  P  F  A  *  L  S  L  L  *  T  L  V  K   </first_frame>
            <second_frame>  C  N  L  L  N  *  E  L  R  M  N  R  T  R  I  I  S  S  Y  *  A  R  N  L  K  N  F  T  F  S  N  I  L  Y  N  K  L  F  C  L  D  I  F  I  C  H  N  P  S  A  T  F  L  S  L  H  V  M  S  Q  Q  N  F  S  F  L  D  D  Y  C  L  V  F  K  R  N  E  N  K  K  N  T  K  *  P  T  F  L  Y  F  F  T  R  Y  T  T  E  L  N  A  K  I  D  M  K  N  V  T  S  L  H  F  *  C  R  L  Y  L  F  A  I  E  K  C  R  M  V  I  F  G  K  N  *  *  M  W  Y  F  E  K  G  F  M  T  V  L  L  L  N  Y  P  S  Y  K  R  *  *  R  </second_frame>
            <third_frame>   V  T  Y  *  I  K  S  S  G  *  T  E  H  E  L  L  V  H  I  K  Q  E  T  *  K  T  S  P  S  P  T  Y  S  T  T  N  S  F  V  L  I  S  S  S  A  T  I  P  V  P  H  F  S  V  C  T  L  *  V  N  K  T  L  V  F  *  M  I  I  A  W  F  S  K  E  T  K  I  R  R  I  Q  N  N  Q  H  F  F  T  S  S  P  D  T  Q  L  N  *  M  Q  K  *  I  *  K  M  L  P  A  C  T  F  D  A  D  C  T  C  L  Q  L  K  S  V  E  W  S  F  L  V  K  T  D  E  C  G  I  L  R  K  D  L  *  R  S  F  C  L  I  I  P  L  I  N  V  S  K  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0124N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="50974" PGL_stop="52020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50974" e_stop="51070"/>
            <exon e_start="51154" e_stop="51304"/>
            <exon e_start="51445" e_stop="51575"/>
            <exon e_start="51663" e_stop="52020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.588" e_score="0.969"/>
          <exon-intron don_prob="0.962" acc_prob="0.877" e_score="0.967"/>
          <exon-intron don_prob="0.901" acc_prob="0.986" e_score="0.954"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="50974" e_stop="51070" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.588">
            <gDNA_intron_boundary i_start="51071" i_stop="51153" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="51154" e_stop="51304" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.877">
            <gDNA_intron_boundary i_start="51305" i_stop="51444" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="0.954">
            <gDNA_exon_boundary e_start="51445" e_stop="51575" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.901" acc_prob="0.986">
            <gDNA_intron_boundary i_start="51576" i_stop="51662" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.922">
            <gDNA_exon_boundary e_start="51663" e_stop="52020" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50974" stop="51070"/>
              <exon start="51154" stop="51304"/>
              <exon start="51445" stop="51575"/>
              <exon start="51663" stop="52020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g58060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTATATACTATCATGATAACGGCCACAGTAGTAAAACTTGCCCTTTGGTTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTACGCAAAG : GATCACTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTGTACTTGGCGATAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATGCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAACGCAG : TGTCACTAGTGGGACAATCAGCCCCACCCGAATACTTGCAAAAGTTAACGTATCTTGTGATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTCGTAGAG : GTAGATATTGAACTCCCGGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAACTCGAAAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTACCAAACACTGAACCTTAGGTTCATGTTTACGTTTAAGCCCGGATAAAGGAAGAGGGTTGTTATTATTATCGACGATTCGGGGTTTTGTTGTTTTTTTTTACACACATTTTAACTATATAAATGTGTATATTCATATGATCCAGCATAAGGGATTGTTGAAAAGAGAGGATATCAAGAACATGGATTTATTTTCAGA</gDNA_template>
            <first_frame> V  I  Y  Y  H  D  N  G  H  S  S  K  T  C  P  L  V  I  L  Q  K  L  R  K  Q  H  C  P  C  L  R  K   : G  S  L  F  *  R  G  Y  *  C  S  R  T  G  S  S  C  T  W  R  *  I  L  L  V  D  *  S  C  W  C  H  Y  A  C  T  L  Y  H  H  Q  L  V  R  N  C  F  R  K  R  S :   V  T  S  G  T  I  S  P  T  R  I  L  A  K  V  N  V  S  C  D  K  T  P  S  S  E  A  Y  *  Y  S  S  S  L  H  I  W  C  L  V  L  R  R   : G  R  Y  *  T  P  G  R  F  A  F  E  R  S  T  C  Y  R  R  N  S  T  N  K  T  R  K  T  P  *  S  *  T  S  I  R  S  S  R  F  *  M  *  T  Q  T  R  A  L  C  S  Q  Q  V  T  K  H  *  T  L  G  S  C  L  R  L  S  P  D  K  G  R  G  L  L  L  L  S  T  I  R  G  F  V  V  F  F  Y  T  H  F  N  Y  I  N  V  Y  I  H  M  I  Q  H  K  G  L  L  K  R  E  D  I  K  N  M  D  L  F  S   </first_frame>
            <second_frame>  L  Y  T  I  M  I  T  A  T  V  V  K  L  A  L  W  L  Y  C  R  S  S  G  N  N  I  V  R  A  Y  A  K  :  D  H  Y  F  D  V  V  T  N  V  V  G  L  V  A  A  V  L  G  D  K  F  Y  W  W  I  D  P  V  G  A  I  M  L  A  L  Y  T  I  T  N  W  S  G  T  V  L  E  N  A   : V  S  L  V  G  Q  S  A  P  P  E  Y  L  Q  K  L  T  Y  L  V  I  R  H  P  Q  V  K  R  I  D  T  V  R  A  Y  T  F  G  V  L  Y  F  V  E  :  V  D  I  E  L  P  E  D  L  P  L  K  E  A  H  A  I  G  E  T  L  Q  I  K  L  E  K  L  P  E  V  E  R  A  F  V  H  L  D  F  E  C  E  H  K  P  E  H  S  V  L  S  R  L  P  N  T  E  P  *  V  H  V  Y  V  *  A  R  I  K  E  E  G  C  Y  Y  Y  R  R  F  G  V  L  L  F  F  F  T  H  I  L  T  I  *  M  C  I  F  I  *  S  S  I  R  D  C  *  K  E  R  I  S  R  T  W  I  Y  F  Q  </second_frame>
            <third_frame>   Y  I  L  S  *  *  R  P  Q  *  *  N  L  P  F  G  Y  T  A  E  A  Q  E  T  T  L  S  V  P  T  Q  R :   I  T  I  L  T  W  L  L  M  *  S  D  W  *  Q  L  Y  L  A  I  N  S  T  G  G  L  I  L  L  V  P  L  C  L  H  F  I  P  S  P  T  G  Q  E  L  F  *  K  T  Q  :  C  H  *  W  D  N  Q  P  H  P  N  T  C  K  S  *  R  I  L  *  *  D  T  L  K  *  S  V  L  I  Q  F  E  P  T  H  L  V  S  C  T  S  *  R :   *  I  L  N  S  R  K  I  C  L  *  K  K  H  M  L  S  E  K  L  Y  K  *  N  S  K  N  S  L  K  L  N  E  H  S  F  I  S  I  L  N  V  N  T  N  Q  S  T  L  F  S  A  G  Y  Q  T  L  N  L  R  F  M  F  T  F  K  P  G  *  R  K  R  V  V  I  I  I  D  D  S  G  F  C  C  F  F  L  H  T  F  *  L  Y  K  C  V  Y  S  Y  D  P  A  *  G  I  V  E  K  R  G  Y  Q  E  H  G  F  I  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50975" stop="51070"/>
                    <exon start="51154" stop="51304"/>
                    <exon start="51445" stop="51575"/>
                    <exon start="51663" stop="51842"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYTIMITATVVKLALWLYCRSSGNNIVRAYAKDHYFDVVTNVVGLVAAVLGDKFYWWIDPVGAIMLALYTITNWSGTVLENAVSLVGQSAPPEYLQKLTYLVIRHPQVKRIDTVRAYTFGVLYFVEVDIELPEDLPLKEAHAIGETLQIKLEKLPEVERAFVHLDFECEHKPEHSVLSRLPNTEP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="64082" PGL_stop="59842"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64082" e_stop="63986"/>
            <exon e_start="62829" e_stop="62726"/>
            <exon e_start="62110" e_stop="61945"/>
            <exon e_start="60853" e_stop="60761"/>
            <exon e_start="60472" e_stop="60341"/>
            <exon e_start="60243" e_stop="59842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.441" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.954" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64082" e_stop="63986" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.860">
            <gDNA_intron_boundary i_start="63985" i_stop="62830" i_length="1156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62829" e_stop="62726" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.441" acc_prob="0.952">
            <gDNA_intron_boundary i_start="62725" i_stop="62111" i_length="615"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62110" e_stop="61945" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61944" i_stop="60854" i_length="1091"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60853" e_stop="60761" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60760" i_stop="60473" i_length="288"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60472" e_stop="60341" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.954">
            <gDNA_intron_boundary i_start="60340" i_stop="60244" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60243" e_stop="59842" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64082" stop="63986"/>
              <exon start="62829" stop="62726"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="59842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g34860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64080" stop="63986"/>
              <exon start="62829" stop="62726"/>
              <exon start="62110" stop="61945"/>
              <exon start="60853" stop="60761"/>
              <exon start="60472" stop="60341"/>
              <exon start="60243" stop="60198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT : TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG : AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT : GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG : GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG : GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</gDNA_template>
            <first_frame> K  K  E  R  E  M  A  S  H  L  S  F  S  T  P  S  A  L  W  G  S  Y  L  N  P  K  S  S  S  L  S  Q   : L  N  M  K  K  R  V  G  S  H  V  N  C  S  S  E  D  E  S  C  T  S  A  S  S  E  H  L  R  E  H  V  E  E  K  :  R  S  Q  T  S  V  S  R  R  W  C  L  T  C  L  C  S  T  G  A  L  I  T  A  S  G  N  P  I  S  E  P  R  A  I  A  L  D  G  N  E  S  P  G  C  R  N  C  G  G  S  G  A  I  I   : C  D  M  C  G  G  T  G  K  W  K  A  L  N  R  K  R  A  K  D  V  Y  E  F  T  E  C  P  N  C  Y   : G  R  G  K  L  V  C  P  V  C  L  G  T  G  L  P  N  N  K  G  L  L  R  R  P  D  A  R  K  L  L  D  K  M  Y  N  G  R  L  L  P  N  S  *   : G  *  K  L  Y  Y  T  R  R  T  M  R  R  D  S  K  *  L  W  M  *  Q  L  L  C  C  *  V  Y  L  L  N  L  S  M  N  S  R  S  L  P  D  L  S  *  Y  R  G  S  S  I  P  G  L  S  S  T  P  P  P  F  W  K  E  M  G  S  S  I  C  H  M  I  E  L  A  Y  Q  L  F  R  N  I  V  R  E  E  Q  *  F  G  V  Q  F  A  Y  C  L  H  I  S  *  Q  *  R  I  K  E  E  K  T  D  C  F  V  L  W  I  V  S  G  K  L  L  L  K  V  C  T  I  Y  Y  F  L  </first_frame>
            <second_frame>  K  K  R  E  R  W  L  P  T  S  H  F  L  L  L  Q  L  Y  G  V  H  T  *  T  P  N  L  P  L  *  V  S  :  *  I  *  R  R  G  *  G  L  M  *  T  A  A  Q  K  M  R  V  V  L  L  H  L  P  S  I  Y  G  N  M  *  R  K  R :   D  L  K  H  Q  S  H  G  D  G  V  *  P  A  Y  A  Q  L  E  L  *  *  L  L  L  E  I  Q  F  L  N  Q  E  Q  L  P  *  M  E  M  K  V  L  A  V  G  I  V  G  V  V  A  L  *  F  :  V  I  C  V  V  V  Q  E  N  G  K  L  *  T  E  N  E  L  K  T  F  M  S  S  L  S  A  P  I  V  T  :  D  E  G  N  *  Y  V  L  Y  V  *  E  L  V  Y  L  I  I  K  V  F  L  G  G  Q  T  Q  G  S  Y  L  T  R  C  I  M  D  D  C  C  Q  T  H  K  :  V  E  S  C  T  T  P  E  G  Q  *  E  E  T  Q  S  N  Y  G  C  N  N  Y  C  V  V  E  C  T  C  *  I  S  R  *  T  L  V  L  S  L  I  S  L  D  T  G  V  V  V  F  P  D  Y  H  R  P  L  H  H  S  G  K  K  W  E  V  V  S  A  T  *  *  S  *  H  I  N  Y  F  G  I  L  *  E  K  S  N  N  L  V  F  N  L  H  I  V  F  I  S  H  N  N  R  E  *  K  K  R  K  Q  T  V  L  Y  F  G  L  Y  L  E  N  C  Y  L  K  F  V  P  S  I  I  F  * </second_frame>
            <third_frame>   K  R  E  R  D  G  F  P  P  L  I  F  Y  S  F  S  S  M  G  F  I  L  K  P  Q  I  F  L  F  K  S  V :   E  Y  E  E  E  G  R  V  S  C  E  L  Q  L  R  R  *  E  L  Y  F  C  I  F  R  A  F  T  G  T  C  R  G  K   : E  I  S  N  I  S  L  T  E  M  V  S  D  L  P  M  L  N  W  S  S  D  N  C  F  W  K  S  N  F  *  T  K  S  N  C  L  R  W  K  *  K  S  W  L  S  E  L  W  G  *  W  R  Y  N  L :   *  Y  V  W  W  Y  R  K  M  E  S  S  K  Q  K  T  S  *  R  R  L  *  V  H  *  V  P  Q  L  L  R :   T  R  E  T  S  M  S  C  M  F  R  N  W  F  T  *  *  *  R  S  S  *  A  A  R  R  K  E  V  T  *  Q  D  V  *  W  T  T  V  A  K  L  I  R :   L  K  A  V  L  H  Q  K  D  N  E  K  R  L  K  V  T  M  D  V  T  T  I  V  L  L  S  V  P  V  K  S  L  D  E  L  S  F  S  P  *  S  L  L  I  P  G  *  *  Y  S  R  T  I  I  D  P  S  T  I  L  E  R  N  G  K  *  Y  L  P  H  D  R  V  S  I  S  I  I  S  E  Y  C  E  R  R  A  I  I  W  C  S  I  C  I  L  S  S  Y  L  I  T  I  E  N  K  R  R  E  N  R  L  F  C  T  L  D  C  I  W  K  I  V  T  *  S  L  Y  H  L  L  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0124N23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64082" stop="63986"/>
                    <exon start="62829" stop="62726"/>
                    <exon start="62110" stop="61945"/>
                    <exon start="60853" stop="60761"/>
                    <exon start="60472" stop="60342"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKEREMASHLSFSTPSALWGSYLNPKSSSLSQLNMKKRVGSHVNCSSEDESCTSASSEHLREHVEEKRSQTSVSRRWCLTCLCSTGALITASGNPISEPRAIALDGNESPGCRNCGGSGAIICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 12 chains have been computed
$ 
$ memory statistics:
$ 10664 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2132 bytes was the average size of a spliced alignment
$ 9312 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2328 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 12 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:33:43
-->
