<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:31:56"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479880" ref_strand="+" ref_description="SGN-E479880 [cSTD-11-B6]">
      <seq>cttttatgattatacctcttttcttgtcttacagcaaagaaacgttgaagactacagacaccacataaactctttctctctctctcttctttcctctttttggctcagattcgatcaacccagcaagtgttgtagattctgagttgatttgtggaaattggttggttaatcgatgagaatgttgagttatgaagtgtagacctgaaagatggggtgtgttttgggtcgggaagtttcatcaggcttagtacacaacggcagggaggagaaaagggaaggtggtgtgcattatgagaagaagagtcagagcattagtgctgaattaactgaaactttagaggtcaagggggctgaaaatgtaactgttcatactgaagttgtggaagccgatgaaggtgacgaaactaagaaggatgacaaggcggagcatgacggaaaatctaggaaagaaaagagaaggtcgaagcctgatccaagattaagtaatccacctaagcataaacatggggagcaggtcgctgctggatggccttcctggctctctgctcatgttggggaagcaattgatggttggctcccacgacgcgctgacacttttgagaaaattgataagattggccaagggacatacagtaatgtctacaaagcgagagatactngtactggtaaaattgttgctctaaagaaagtgcgttttgacaatctagaacctgagagtgtgagattcatggctagagaaattatcattttgcgacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="7766" stop="9867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8066" g_stop="8185" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8186" i_stop="8826" i_length="641">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8827" g_stop="9309" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="613" r_length="487" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9310" i_stop="9421" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9422" g_stop="9567" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="759" r_length="146" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E479880" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8066" e_stop="8185"/>
          <exon e_start="8827" e_stop="9309"/>
          <exon e_start="9422" e_stop="9567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTATGATTATA-CTCTTTTCTTGTCTTACAGCAAAGAAACGTTGAAGACTACAGACACCACATAAA-----ACTCTCTCTCTCTTATTTCCTATTTTTGGCTCAGATTTGATCAACCCAGCAAGTAATTTCCACTTACCCCTTTTTTTTTTGATGCTTTTCTTGGACTTTTACTAGAATAAAGACTGTCATTTTCATGTTTGTGGACGTGTTTGTAGTTTTTGTTAATTTGGGTATTAGGGTTTTTATCGTTTTGTAGATGTATCTTTGTTGCTACAGTGTGGGTCTGTCTTGGTGGGTTTTATTTTGGGTCAGATGAAAAGATTGATTTGGGTTTGACTGTGAATCTGAAACTGGGTGACAAGTGCGACCAAGTAAAAGGGTTGTTTCTGTTTTTGTTTTGGAGTTGTAATTGATGGTTGATGTGTGTTAGTTTCTGAGAAGAAGGGGGTTACTGTTATGATTGTTTGTTGACTATGTTTGAATCTGTGATAATTTTGTCTAATTGACCACCCCTTTTTAAAAAAATTACCAAACTTTGCCCAGTGTTGGAGTAATTGTTTCTTTGGATTCTTCTTGTTTATGGGGCGGGCAAGGTTGGGGGGCTTTGTCATGGGTCCTTAAGATTTGATGCTAAGTAGGGAACTCAACTATTGCCAATTTAATGATTTACTGTTTTTTTTCCTTTTCTCTAGCCTATTTAATGATTTACTCTTTTTTCTTGCTTGGCCAATTTAATTATGGACTATCATATTGCTTTTGTAGGTGTTGTAGATTCTGAGTTGA-TTGTGGAAATTGGTTGGTTAATCCATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGCTTCATCAGGCTTAGTACACAATGGCAGAGAGGAGAAAAGGGAA---GGTGCACATTATGAGAAGAAGAGTCAGAGCATTAGCGCTGAATCCACTGAAACTTTTGAGGTCAAGGGGGCTGAAAATGTAACTGTTGACACTGAAGTTGTGGAAGCCGATGAAGGTGATGAAACTAAGAAGGATGACAAGACGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAGCAGGTTGCTGCTGGATGGCCTTCCTGGCTCTCTGCTCATGTTGGGGAAGCAATTGATGGTTGGCTCCCACGACGCGCTGACACTTTTGAGAAAATTGATAAGGTAGCTTTTAAGATTTCTTTTTGTTTTCCTTGATACATTTCAAGTTCTCTCGAGTCCTGAATTAAACTTTTGCTTTTGATGATTAACAATCTGCCTCTGTTTTTCTTAATAGATTGGCCAAGGGACATACAGTAATGTCTACAAGGCGAGAGATACTGTTACTGGTAAAATTGTTGCTCTAAAGAAAGTGCGTTTTGACAATCTAGAACCTGAGAGTGTGAGATTCATGGCTAGAGAAATTATAATTTTGCGACAACT</genome_strand>
        <mrna_strand>CTTTTATGATTATACCTCTTTTCTTGTCTTACAGCAAAGAAACGTTGAAGACTACAGACACCACATAAACTCTTTCTCTCTCTCTCTTCTTTCCTCTTTTTGGCTCAGATTCGATCAACCCAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTAGATTCTGAGTTGATTTGTGGAAATTGGTTGGTTAATCGATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGTTTCATCAGGCTTAGTACACAACGGCAGGGAGGAGAAAAGGGAAGGTGGTGTGCATTATGAGAAGAAGAGTCAGAGCATTAGTGCTGAATTAACTGAAACTTTAGAGGTCAAGGGGGCTGAAAATGTAACTGTTCATACTGAAGTTGTGGAAGCCGATGAAGGTGACGAAACTAAGAAGGATGACAAGGCGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAGCAGGTCGCTGCTGGATGGCCTTCCTGGCTCTCTGCTCATGTTGGGGAAGCAATTGATGGTTGGCTCCCACGACGCGCTGACACTTTTGAGAAAATTGATAAG................................................................................................................ATTGGCCAAGGGACATACAGTAATGTCTACAAAGCGAGAGATACTNGTACTGGTAAAATTGTTGCTCTAAAGAAAGTGCGTTTTGACAATCTAGAACCTGAGAGTGTGAGATTCATGGCTAGAGAAATTATCATTTTGCGACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585533" ref_strand="+" ref_description="SGN-E585533 [67994]">
      <seq>tgattatactcttttcttgtcttacagcaaagaaacgttgaagactacagacaccacataaactctttctctctctctcttctttcctctttttggctcagattcgatcaacccagcaagtgttgtagattctgagttgatttgtggaaattggttggttaatcgatgagaatgttgagttatgaagtgtagacctgaaagatggggtgtgttttgggtcgggaagtttcatcaggcttagtacacaacggcagggaggagaaaagggaaggtggtgtgcattatgagaagaagagtcagagcattagtgctgaattaactgaaactttagaggtcaagggggctgaaaatgtaactgttcatactgaagttgtggaagccgatgaaggtgacgaaactaagaaggatgacaaggcggagcatgacggaaaatctaggaaagaaaagagaaggtcgaagcctgatccaagattaagtaatccacctaagcataaacatggggagcaggtcgctgctggatggccttcctggctctctgctcatgttggggaagcaattgatggttggctcccacgacgcgctgacacttttgacgaaaattgataagattggccaagggacatacagtaatgtctacaaagcgagagatactgttactggtaaaattgttgctctaaagaaagtgcgttttgacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="7772" stop="9811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8072" g_stop="8185" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8186" i_stop="8826" i_length="641">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8827" g_stop="9309" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="607" r_length="488" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9310" i_stop="9421" i_length="112">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9422" g_stop="9511" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="697" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E585533" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8072" e_stop="8185"/>
          <exon e_start="8827" e_stop="9309"/>
          <exon e_start="9422" e_stop="9511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTATACTCTTTTCTTGTCTTACAGCAAAGAAACGTTGAAGACTACAGACACCACATAAA-----ACTCTCTCTCTCTTATTTCCTATTTTTGGCTCAGATTTGATCAACCCAGCAAGTAATTTCCACTTACCCCTTTTTTTTTTGATGCTTTTCTTGGACTTTTACTAGAATAAAGACTGTCATTTTCATGTTTGTGGACGTGTTTGTAGTTTTTGTTAATTTGGGTATTAGGGTTTTTATCGTTTTGTAGATGTATCTTTGTTGCTACAGTGTGGGTCTGTCTTGGTGGGTTTTATTTTGGGTCAGATGAAAAGATTGATTTGGGTTTGACTGTGAATCTGAAACTGGGTGACAAGTGCGACCAAGTAAAAGGGTTGTTTCTGTTTTTGTTTTGGAGTTGTAATTGATGGTTGATGTGTGTTAGTTTCTGAGAAGAAGGGGGTTACTGTTATGATTGTTTGTTGACTATGTTTGAATCTGTGATAATTTTGTCTAATTGACCACCCCTTTTTAAAAAAATTACCAAACTTTGCCCAGTGTTGGAGTAATTGTTTCTTTGGATTCTTCTTGTTTATGGGGCGGGCAAGGTTGGGGGGCTTTGTCATGGGTCCTTAAGATTTGATGCTAAGTAGGGAACTCAACTATTGCCAATTTAATGATTTACTGTTTTTTTTCCTTTTCTCTAGCCTATTTAATGATTTACTCTTTTTTCTTGCTTGGCCAATTTAATTATGGACTATCATATTGCTTTTGTAGGTGTTGTAGATTCTGAGTTGA-TTGTGGAAATTGGTTGGTTAATCCATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGCTTCATCAGGCTTAGTACACAATGGCAGAGAGGAGAAAAGGGAA---GGTGCACATTATGAGAAGAAGAGTCAGAGCATTAGCGCTGAATCCACTGAAACTTTTGAGGTCAAGGGGGCTGAAAATGTAACTGTTGACACTGAAGTTGTGGAAGCCGATGAAGGTGATGAAACTAAGAAGGATGACAAGACGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAGCAGGTTGCTGCTGGATGGCCTTCCTGGCTCTCTGCTCATGTTGGGGAAGCAATTGATGGTTGGCTCCCACGACGCGCTGACACTTTTGA-GAAAATTGATAAGGTAGCTTTTAAGATTTCTTTTTGTTTTCCTTGATACATTTCAAGTTCTCTCGAGTCCTGAATTAAACTTTTGCTTTTGATGATTAACAATCTGCCTCTGTTTTTCTTAATAGATTGGCCAAGGGACATACAGTAATGTCTACAAGGCGAGAGATACTGTTACTGGTAAAATTGTTGCTCTAAAGAAAGTGCGTTTTGACAAT</genome_strand>
        <mrna_strand>TGATTATACTCTTTTCTTGTCTTACAGCAAAGAAACGTTGAAGACTACAGACACCACATAAACTCTTTCTCTCTCTCTCTTCTTTCCTCTTTTTGGCTCAGATTCGATCAACCCAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTAGATTCTGAGTTGATTTGTGGAAATTGGTTGGTTAATCGATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGTTTCATCAGGCTTAGTACACAACGGCAGGGAGGAGAAAAGGGAAGGTGGTGTGCATTATGAGAAGAAGAGTCAGAGCATTAGTGCTGAATTAACTGAAACTTTAGAGGTCAAGGGGGCTGAAAATGTAACTGTTCATACTGAAGTTGTGGAAGCCGATGAAGGTGACGAAACTAAGAAGGATGACAAGGCGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAGCAGGTCGCTGCTGGATGGCCTTCCTGGCTCTCTGCTCATGTTGGGGAAGCAATTGATGGTTGGCTCCCACGACGCGCTGACACTTTTGACGAAAATTGATAAG................................................................................................................ATTGGCCAAGGGACATACAGTAATGTCTACAAAGCGAGAGATACTGTTACTGGTAAAATTGTTGCTCTAAAGAAAGTGCGTTTTGACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367219" ref_strand="+" ref_description="SGN-E367219 [cLPT-5-K23]">
      <seq>attatactcttttcttgtcttacagcaaagaaacgttgaagactacagacaccacataaaactctttctctctctctcttatttcctatttttggctcagatttgatcaacccagcaagtgttgtagattctgagttgatttgtggaaatttggttgtttaatccatgagaatgttgagttatgaagtgtagacctgaaagatggggtgtgttttgggtcgggaagcttcatcaggcttagtacacaatggcagagaggagaaaagggaaggtgcgcattatgagaagaagagtcagagcattagcgctgaatccactgaaactttagaggtcaagggggctgaaaatgtaactgttgacactgaagttgtggaagccgatgaaggtgatgaaactaagaaggatgacaagacggagcatgacggaaaatctaggaaagaaaagagaaggtcgaagcctgatccaagattaagtaatccacctaagcataaacatggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="7774" stop="9507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8074" g_stop="8185" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8186" i_stop="8826" i_length="641">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8827" g_stop="9207" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="501" r_length="383" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E367219" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8074" e_stop="8185"/>
          <exon e_start="8827" e_stop="9207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATACTCTTTTCTTGTCTTACAGCAAAGAAACGTTGAAGACTACAGACACCACATAAAA------CTCTCTCTCTCTTATTTCCTATTTTTGGCTCAGATTTGATCAACCCAGCAAGTAATTTCCACTTACCCCTTTTTTTTTTGATGCTTTTCTTGGACTTTTACTAGAATAAAGACTGTCATTTTCATGTTTGTGGACGTGTTTGTAGTTTTTGTTAATTTGGGTATTAGGGTTTTTATCGTTTTGTAGATGTATCTTTGTTGCTACAGTGTGGGTCTGTCTTGGTGGGTTTTATTTTGGGTCAGATGAAAAGATTGATTTGGGTTTGACTGTGAATCTGAAACTGGGTGACAAGTGCGACCAAGTAAAAGGGTTGTTTCTGTTTTTGTTTTGGAGTTGTAATTGATGGTTGATGTGTGTTAGTTTCTGAGAAGAAGGGGGTTACTGTTATGATTGTTTGTTGACTATGTTTGAATCTGTGATAATTTTGTCTAATTGACCACCCCTTTTTAAAAAAATTACCAAACTTTGCCCAGTGTTGGAGTAATTGTTTCTTTGGATTCTTCTTGTTTATGGGGCGGGCAAGGTTGGGGGGCTTTGTCATGGGTCCTTAAGATTTGATGCTAAGTAGGGAACTCAACTATTGCCAATTTAATGATTTACTGTTTTTTTTCCTTTTCTCTAGCCTATTTAATGATTTACTCTTTTTTCTTGCTTGGCCAATTTAATTATGGACTATCATATTGCTTTTGTAGGTGTTGTAGATTCTGAGTTGA-TTGTGGAAA-TTGGTTGGTTAATCCATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGCTTCATCAGGCTTAGTACACAATGGCAGAGAGGAGAAAAGGGAAGGTGCACATTATGAGAAGAAGAGTCAGAGCATTAGCGCTGAATCCACTGAAACTTTTGAGGTCAAGGGGGCTGAAAATGTAACTGTTGACACTGAAGTTGTGGAAGCCGATGAAGGTGATGAAACTAAGAAGGATGACAAGACGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAG</genome_strand>
        <mrna_strand>ATTATACTCTTTTCTTGTCTTACAGCAAAGAAACGTTGAAGACTACAGACACCACATAAAACTCTTTCTCTCTCTCTCTTATTTCCTATTTTTGGCTCAGATTTGATCAACCCAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTAGATTCTGAGTTGATTTGTGGAAATTTGGTTGTTTAATCCATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGCTTCATCAGGCTTAGTACACAATGGCAGAGAGGAGAAAAGGGAAGGTGCGCATTATGAGAAGAAGAGTCAGAGCATTAGCGCTGAATCCACTGAAACTTTAGAGGTCAAGGGGGCTGAAAATGTAACTGTTGACACTGAAGTTGTGGAAGCCGATGAAGGTGATGAAACTAAGAAGGATGACAAGACGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487881" ref_strand="+" ref_description="SGN-E487881 [cSTE-26-J4]">
      <seq>tttattttgggtcagatgaaaagattgatttgggtttgactgtgaatctgaaactgggtgacaagtgcgagcaagtaaaaaggtgttgtagattctgagttgatttgtggaaattggttggttaatcgatgagaatgttgagttatgaagtgtagacctgaaagatggggtgtgttttgggtcgggaagtttcatcaggcttagtacacaacggcagggaggagaaaagggaaggtggtgtgcattatgagaagaagagtcagagcattagtgctgaattaactgaaactttagaggtcaagggggctgaaaatgtaactgttcatactgaagttgtggaagccgatgaaggtgacgaaactaagaaggatgacaaggcggagcatgacggaaaatctaggaaagaaaagagaaggtcgaagcctgatccaagattaagtaatccacctaagcataaacatggggagcangtcgctgctggatggccttcctggctctctgctcatgttggggaaagcattgatggttggctcccacgacgcgctgacacttttgagaaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="8062" stop="9605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8362" g_stop="8443" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8444" i_stop="8826" i_length="383">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8827" g_stop="9305" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="565" r_length="483" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E487881" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8362" e_stop="8443"/>
          <exon e_start="8827" e_stop="9305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTGGGTCAGATGAAAAGATTGATTTGGGTTTGACTGTGAATCTGAAACTGGGTGACAAGTGCGACCAAGTAAAAGGGTTGTTTCTGTTTTTGTTTTGGAGTTGTAATTGATGGTTGATGTGTGTTAGTTTCTGAGAAGAAGGGGGTTACTGTTATGATTGTTTGTTGACTATGTTTGAATCTGTGATAATTTTGTCTAATTGACCACCCCTTTTTAAAAAAATTACCAAACTTTGCCCAGTGTTGGAGTAATTGTTTCTTTGGATTCTTCTTGTTTATGGGGCGGGCAAGGTTGGGGGGCTTTGTCATGGGTCCTTAAGATTTGATGCTAAGTAGGGAACTCAACTATTGCCAATTTAATGATTTACTGTTTTTTTTCCTTTTCTCTAGCCTATTTAATGATTTACTCTTTTTTCTTGCTTGGCCAATTTAATTATGGACTATCATATTGCTTTTGTAGGTGTTGTAGATTCTGAGTTGA-TTGTGGAAATTGGTTGGTTAATCCATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGCTTCATCAGGCTTAGTACACAATGGCAGAGAGGAGAAAAGGGAA---GGTGCACATTATGAGAAGAAGAGTCAGAGCATTAGCGCTGAATCCACTGAAACTTTTGAGGTCAAGGGGGCTGAAAATGTAACTGTTGACACTGAAGTTGTGGAAGCCGATGAAGGTGATGAAACTAAGAAGGATGACAAGACGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAGCAGGTTGCTGCTGGATGGCCTTCCTGGCTCTCTGCTCATGTTGGGGAAGCAATTGATGGTTGGCTCCCACGACGCGCTGACACTTTTGAGAAAATTGA</genome_strand>
        <mrna_strand>TTTATTTTGGGTCAGATGAAAAGATTGATTTGGGTTTGACTGTGAATCTGAAACTGGGTGACAAGTGCGAGCAAGTAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTAGATTCTGAGTTGATTTGTGGAAATTGGTTGGTTAATCGATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGTTTCATCAGGCTTAGTACACAACGGCAGGGAGGAGAAAAGGGAAGGTGGTGTGCATTATGAGAAGAAGAGTCAGAGCATTAGTGCTGAATTAACTGAAACTTTAGAGGTCAAGGGGGCTGAAAATGTAACTGTTCATACTGAAGTTGTGGAAGCCGATGAAGGTGACGAAACTAAGAAGGATGACAAGGCGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAGCANGTCGCTGCTGGATGGCCTTCCTGGCTCTCTGCTCATGTTGGGGAAAGCATTGATGGTTGGCTCCCACGACGCGCTGACACTTTTGAGAAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427670" ref_strand="+" ref_description="SGN-E427670 [STM-48-L12]">
      <seq>tttattttgggtcagatgaaaagattgatttgggtttgactgtgaatctgaaactgggtgacaagtgcgagcaagtaaaaaggtgttgtagattctgagttgatttgtggaaattggttggttaatcgatgagaatgttgagttatgaagtgtagacctgaaagatggggtgtgttttgggtcgggaagtttcatcaggcttagtacacaacggcagggaggagaaaagggaaggtggtgtgcattatgagaagaagagtcagagcattagtgctgaattaactgaaactttagaggtcaagggggctgaaaatgtaactgttcatactgaagttgtggaagccgatgaaggtgacgaaactaagaaggatgacaaggcggagcatgacggtaaatctaggaaagaaaagagaaggtcgaagcctgatccaagattaagtaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="8062" stop="9484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8362" g_stop="8443" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8444" i_stop="8826" i_length="383">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8827" g_stop="9184" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="444" r_length="362" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E427670" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8362" e_stop="8443"/>
          <exon e_start="8827" e_stop="9184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTGGGTCAGATGAAAAGATTGATTTGGGTTTGACTGTGAATCTGAAACTGGGTGACAAGTGCGACCAAGTAAAAGGGTTGTTTCTGTTTTTGTTTTGGAGTTGTAATTGATGGTTGATGTGTGTTAGTTTCTGAGAAGAAGGGGGTTACTGTTATGATTGTTTGTTGACTATGTTTGAATCTGTGATAATTTTGTCTAATTGACCACCCCTTTTTAAAAAAATTACCAAACTTTGCCCAGTGTTGGAGTAATTGTTTCTTTGGATTCTTCTTGTTTATGGGGCGGGCAAGGTTGGGGGGCTTTGTCATGGGTCCTTAAGATTTGATGCTAAGTAGGGAACTCAACTATTGCCAATTTAATGATTTACTGTTTTTTTTCCTTTTCTCTAGCCTATTTAATGATTTACTCTTTTTTCTTGCTTGGCCAATTTAATTATGGACTATCATATTGCTTTTGTAGGTGTTGTAGATTCTGAGTTGA-TTGTGGAAATTGGTTGGTTAATCCATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGCTTCATCAGGCTTAGTACACAATGGCAGAGAGGAGAAAAGGGAA---GGTGCACATTATGAGAAGAAGAGTCAGAGCATTAGCGCTGAATCCACTGAAACTTTTGAGGTCAAGGGGGCTGAAAATGTAACTGTTGACACTGAAGTTGTGGAAGCCGATGAAGGTGATGAAACTAAGAAGGATGACAAGACGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATC</genome_strand>
        <mrna_strand>TTTATTTTGGGTCAGATGAAAAGATTGATTTGGGTTTGACTGTGAATCTGAAACTGGGTGACAAGTGCGAGCAAGTAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTAGATTCTGAGTTGATTTGTGGAAATTGGTTGGTTAATCGATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGTTTCATCAGGCTTAGTACACAACGGCAGGGAGGAGAAAAGGGAAGGTGGTGTGCATTATGAGAAGAAGAGTCAGAGCATTAGTGCTGAATTAACTGAAACTTTAGAGGTCAAGGGGGCTGAAAATGTAACTGTTCATACTGAAGTTGTGGAAGCCGATGAAGGTGACGAAACTAAGAAGGATGACAAGGCGGAGCATGACGGTAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309522" ref_strand="+" ref_description="SGN-E309522 [cTOA-3-L5]">
      <seq>ctggcattctcagaattgctgactttggactggctactattttcgatccttctcataagcatcaaatgactagtcgagtggttactctctggtatagaccaccagagctgcttctaggtgctactgattatggcgtaggtattgatttatggagtgcacgttgcatcttagctgagttattggctggaaaacccattatgcctggtcggactgaggtagaacaattgcataatatatataaactctgtggttcaccatcagaagagtactggaagaagtccaagttgccgaatgcaacacttttcaagcctcgagaaccctacagacgatgcattaaagagacttttaaagattttcctcagtcttcacttcccctgattgatacattacttgcaattgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="9623" stop="11342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9923" g_stop="10137" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10138" i_stop="10854" i_length="717">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.130" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10855" g_stop="11042" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="403" r_length="188" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E309522" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9923" e_stop="10137"/>
          <exon e_start="10855" e_stop="11042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCATTCTCAGAATTGCTGACTTTGGACTGGCTACTATTTTCGATCCTTCTCATAAGCATCAAATGACTAGTCGAGTGGTTACTCTCTGGTATAGACCACCAGAGCTGCTTCTAGGTGCTACTGATTATGGTGTAGGTATTGATTTATGGAGTGCAGGTTGCATCTTAGCTGAGTTATTGGCTGGAAAACCCATTATGCCTGGTCGGACTGAGGTAATCGCCGTAGTTTGTTATAAATTTTCTGTAGTAATATGTTATAAATTGCTGTAGTTTTGCAAGGGTTTCTTGTAATAGACCCAAAGCGACTTATTACTATTTACAAGGCCCAGTTTATCAACATGAGAAATTCAGCAGAGTCCATTAGGATAATCTATATGCTCAGGGAAAGTGAACTCTCTATAATTGTCAGTTTCAAAAATGAACTCTCTTTAATTGGTTACTATCTTTGGAATGATGGTCTCAATGATAAGAGTATCTGAATTCCGACCCATGGATGATTAGGCTGTGTGCCATTTCTACCAGTATTGCCAATTTTGGAAATTGAATAAAAGCGATCAATTCTGTGAGGAACAATGGTTTTTACTAGCTCTTATTGGATAACAACCTAACAACATTTATAAGGGTGATGTTTGCATACTACGTCTCTAAAATTGAAAGAAAACTGTGGACAGTATGTGTTTTTATCTTTAAATTGATTCTGTTTCTTGCCAGTAGCTTTAGACTGTCTCTTGTATTTTTCTGGAATCAGGAGTACTCTATCTGGGAGATCGTTTAATTAGCATTTATTTTGATACTTCCAAGGCTACAAACTATAGAATTTCTGTGACAAGTATCCCAACTGACTTTAAGCTTGTATGGAATGTGTTAATACACAGGAATGTTTTTATTTCCCTGCATGAGTTATTAACAGCAATTTTTTCTGTCACTAAGGTAGAACAATTGCATAAGATATATAAACTCTGTGGTTCACCATCAGAGGAGTACTGGAAGAAGTCCAAGTTGCCGAATGCAACACTTTTCAAGCCTCGAGAACCCTACAGACGATGCATTAAGGAGACTTTTAAAGATTTTCCTCAGTCTTCACTTCCCCTGATTGATACATTACTTGCAATTGATCC</genome_strand>
        <mrna_strand>CTGGCATTCTCAGAATTGCTGACTTTGGACTGGCTACTATTTTCGATCCTTCTCATAAGCATCAAATGACTAGTCGAGTGGTTACTCTCTGGTATAGACCACCAGAGCTGCTTCTAGGTGCTACTGATTATGGCGTAGGTATTGATTTATGGAGTGCACGTTGCATCTTAGCTGAGTTATTGGCTGGAAAACCCATTATGCCTGGTCGGACTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACAATTGCATAATATATATAAACTCTGTGGTTCACCATCAGAAGAGTACTGGAAGAAGTCCAAGTTGCCGAATGCAACACTTTTCAAGCCTCGAGAACCCTACAGACGATGCATTAAAGAGACTTTTAAAGATTTTCCTCAGTCTTCACTTCCCCTGATTGATACATTACTTGCAATTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338877" ref_strand="+" ref_description="SGN-E338877 [cTOE-21-G10]">
      <seq>ttgcataagatatattttctctgtggttcaccatcagaggagtactggaagaagtccaagttgccgaatgcaacacttttcaagcctcgagaaccctacagacgatgcattaaggagactcttaaagattttcctcagtcttcacttcccctgattgatacattacttgcaattgatcccgcagaacgcaagacggctactgatgcattacgaagtgaatttttcaatacagagccatatgcctgtgatccctctagtcttccaaaatatcctccaaccaaggaaatggatgccaaacggcgggatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="10582" stop="13511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10864" g_stop="11082" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11083" i_stop="13120" i_length="2038">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13121" g_stop="13211" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="310" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E338877" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10864" e_stop="11082"/>
          <exon e_start="13121" e_stop="13211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATAAGATATATAAACTCTGTGGTTCACCATCAGAGGAGTACTGGAAGAAGTCCAAGTTGCCGAATGCAACACTTTTCAAGCCTCGAGAACCCTACAGACGATGCATTAAGGAGACTTTTAAAGATTTTCCTCAGTCTTCACTTCCCCTGATTGATACATTACTTGCAATTGATCCCGCAGAACGCAAGACGGCTACTGATGCATTACGAAGTGAAGTGAGTAGTTTCTGTGTCCAAATTGTCTTGTTCTAATTAGTAGTTTTGTTCTCCTTTCACTGCCAACCATCTTTTGAAGAAAGCTTTTTTTTTTTTTTAAAGAATTATAATATCTTGGGGTCATTAACTCCTTTTGCTGGCACAGATTAGTAAGGTTAAGAGCCTAATTACATGATAGATACTAAAATAGAGGTATTTGCTATGCTTTCTCTAGTGGTAGAAGAAATTTCCACAAGTCTTACCAGGTAGGGCTGTACCAAAGTTATGCTCTCTGTGAGATATAAACTAGTTTAAATGGGTTTGGGTACTATACCTGTGACTTTTATGTTAGGAAGCTCTGTAGCTTGAAGGTATTGGTGTAAATGAGAAATTGCCAATAGCCTCACTTTTTTCTGATGACCGTGGTGTCCAGGCCAGCTTTCGCTCACCTCGACTAATTCCACGAGACACCTGCCACCTCCCATTTGTTATTACAAAATTCTTGCCATATAATTTTGGTTTGGTAATAAGTCAGTTCTGCAGTCGTTCGGTACTTCTAGTACAGCCCTTGGCAGATTTATTTGCTACTTGTGATGTTTTAAGTTTGGATTCTCTGGTGAAAACTTTTAGCAAGTGATCAGTCGTTTGGAACTTTTTAGTGTTTAGTTTGCTATTGGGTTATTTTTGTCACTTGTTTTTGAGTTCAGGTTCGCTGGTGAAAAGTAAAATACGGTATTAAATGTCTGCAGTGAGTAATTTACACTTCGCTTATGCAGACTATTGACTATTCAAAGAAAAGAATAACCATCAGTACTCCCTCTATTAAAAAATGTTCACTCTTTGCTTGCAAATATCCATAGCTTAGTGAACCACTGACCTTTTACAATGTATTTTATTTTGAAACTGGTAACATTGAGATATGAGGTAAATTATAATTTATACTACTGCTCATTTAGGTTGTGAATATCTATTTAGTGTTAAAAGATAATTGTTGTCATCAAGTTTGTAGCCTGTTTGGCCAAGCTTTTGAAACTAAAAGCACTTGTATCAAAATACACAGTAGTTTGTTCTGGAGAGTTGAGGTGTTTGGAATAGTTAGTATAAATTGCCAAGCTTCTTTAAGCCTCAGGCTGGAGCTTAGTTAATGGTTGGAGCTTCGTGAGACCTAGTTTTAATAAGATGGGTAACATCAGACCAAACACTTGACATAAAACAAATTGCTCAATTTCAAGCTGTATAGTGGACAATTTGACCCTTCTCTGAAAAATAGATTATTTTCTTGATCAAATAAATGTAATCTCATTCATAAACATGGCCCAAAACTTGGCTATGTACAAAGGTTGAAGGTTATACCACAAAAGGTAAAGAATCTACAAAAAGAAATGATTCTCTACAAACATCAAATCTTCTATACAGTTGGAACTTGTATGGGTGCACCAAAAGAAAACAAGAGATTGGACGCTACTTCTCAACAGAGAAAAACTTGACTCTACCCCTTCAAAAGCTCCCCTATTTATCTCTCCACAGTCCACACCACCCACATTAATGCTAGTAAAACTACATTCCATGCTCTACATCTTCTCCTTTTCTCCCACTCTTTCAACTGAACATCAGTTCTTTCCATTTAATTGGTCCCAATGGGCTCTTTGCTCCAAATTGATCAAATCAACCCTTAATATGCAAAAAGAGCCAAACAAAATTTGGATGGAGTACAATTTGAACTGTGTTTGATAATCCTTAATGTTCACGGATAAAGCAAAATATATTTGTAATTTCAGTTTTATTGACATAGAGGAGTAGGACAAGTAAGACATCAAATAGTTTAGCTTGAAGGAACAAAAGAAATAATAGTTATGAGCTATTTAACTACTTTTCCCACTGTCATTCTTTCTTGGTGCAGCACTACGTCATTCTTTTTTCTGGTGTTCTTGTATAGCATGTGTTATTGTGATATACCGTGTCTTCTCTTAACCTGAACACATCATTTTAAATAACGTGTTTCACTTGTATTCTTATGCTGTTGCCTTCTTCTATGGTTAATAAAGTTCAATTTCTGCAGTTTTTCAATACAGAGCCATATGCCTGTGATCCCTCTAGTCTTCCAAAATATCCTCCAACCAAGGAAATGGATGCCAAACGGCGGGATGATG</genome_strand>
        <mrna_strand>TTGCATAAGATATATTTTCTCTGTGGTTCACCATCAGAGGAGTACTGGAAGAAGTCCAAGTTGCCGAATGCAACACTTTTCAAGCCTCGAGAACCCTACAGACGATGCATTAAGGAGACTCTTAAAGATTTTCCTCAGTCTTCACTTCCCCTGATTGATACATTACTTGCAATTGATCCCGCAGAACGCAAGACGGCTACTGATGCATTACGAAGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCAATACAGAGCCATATGCCTGTGATCCCTCTAGTCTTCCAAAATATCCTCCAACCAAGGAAATGGATGCCAAACGGCGGGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249227" ref_strand="+" ref_description="SGN-E249227 [cLEF-50-F13]">
      <seq>ttgtattaagacactccggcagcactccgattacgtcaccacccttgcttcagcagaaaaaaatagcaatgttattgcatctgctggtcttggtggtgaggttttcatatgggatcttgaagctgcacttactccgacatctaagtccggtgatgccaccgaagaagactgttcaaatggtgtcaatggttcaggaagttcattgcccatgacaagcatccgtcctatcagttcgggcaataacatttccttgcagacccagtctcaagtatatattcctgtgactgcaaaaggccataaggagtccgtatatgcattggcaatgaatgagagtggatcccttcttgtttctggtggtactgagaaggttgtgcgcgtttgggacccaagaactggttccaagaccatgaagctaaaaggtcatacagataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="13419" stop="14692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13719" g_stop="13782" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13783" i_stop="13923" i_length="141">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13924" g_stop="14226" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="367" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14227" i_stop="14325" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14326" g_stop="14392" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="434" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E249227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13719" e_stop="13782"/>
          <exon e_start="13924" e_stop="14226"/>
          <exon e_start="14326" e_stop="14392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTAAGACACTCCGGCAGCACTCCGATTACGTCACCACCCTTGCTTCAGCAGAAAAAAATGTATCACTTCTCTGCAAAAGCTTTTAGTACTTTTAAATCGTTTGATGAATCAAACTTATGGCTGAATTGTGGTTGAGTCTTTTGGCTTTAATGTGAGTGTAATTGCCTTTTTTTCTGATTTTGTTGTTACCATAATGACAGAGCAATGTTATTGCATCTGCTGGTCTTGGTGGTGAGGTTTTCATATGGGATCTTGAAGCTGCACTTACTCCGACATCTAAGTCCGGTGATGCCACCGAAGAAGACTGTTCAAATGGTGTCAATGGTTCAGGAAGTTCATTGCCCATGACAAGCATCCGTCCTATCAGTTCGGGCAATAACATTTCCTTGCAGACCCAGTCTCAAGTATATATTCCTGTGACTGCAAAAGGCCATAAGGAGTCCGTATATGCATTGGCAATGAATGAGAGTGGATCCCTTCTTGTTTCTGGTGGTACTGAGAAGGTATATTTCTGTTTGTTAGGTTAGTTTGGAATATTTTGATACACAAGTTAACCTACTAGCATAGAAGCTTTGAATGACTATGTTCTGATTTTCTTCTAGGTTGTGCGCGTTTGGGACCCAAGAACTGGTTCCAAGACCATGAAGCTAAAAGGTCATACAGATAATA</genome_strand>
        <mrna_strand>TTGTATTAAGACACTCCGGCAGCACTCCGATTACGTCACCACCCTTGCTTCAGCAGAAAAAAAT.............................................................................................................................................AGCAATGTTATTGCATCTGCTGGTCTTGGTGGTGAGGTTTTCATATGGGATCTTGAAGCTGCACTTACTCCGACATCTAAGTCCGGTGATGCCACCGAAGAAGACTGTTCAAATGGTGTCAATGGTTCAGGAAGTTCATTGCCCATGACAAGCATCCGTCCTATCAGTTCGGGCAATAACATTTCCTTGCAGACCCAGTCTCAAGTATATATTCCTGTGACTGCAAAAGGCCATAAGGAGTCCGTATATGCATTGGCAATGAATGAGAGTGGATCCCTTCTTGTTTCTGGTGGTACTGAGAAG...................................................................................................GTTGTGCGCGTTTGGGACCCAAGAACTGGTTCCAAGACCATGAAGCTAAAAGGTCATACAGATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744439" ref_strand="+" ref_description="SGN-E744439 [GI|399632]">
      <seq>taggttttacatgggatctgaagcgtcacattctccgacatctaagtccggtgagtccaccgaagaagactgttcaaatggtgtcaatggttcaggaagttcattgcccataacaagcatccgtcctatcagttcgggcaataacatttccttgcagacccagtctcaagtatatattcctgtgactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="13658" stop="14447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13957" g_stop="14147" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E744439" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13957" e_stop="14147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTTTCATATGGGATCTTGAAGCTGCACTTACTCCGACATCTAAGTCCGGTGATGCCACCGAAGAAGACTGTTCAAATGGTGTCAATGGTTCAGGAAGTTCATTGCCCATGACAAGCATCCGTCCTATCAGTTCGGGCAATAACATTTCCTTGCAGACCCAGTCTCAAGTATATATTCCTGTGACTGC</genome_strand>
        <mrna_strand>TAGGTTTT-ACATGGGATC-TGAAGCGTCACATTCTCCGACATCTAAGTCCGGTGAGTCCACCGAAGAAGACTGTTCAAATGGTGTCAATGGTTCAGGAAGTTCATTGCCCATAACAAGCATCCGTCCTATCAGTTCGGGCAATAACATTTCCTTGCAGACCCAGTCTCAAGTATATATTCCTGTGACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331996" ref_strand="+" ref_description="SGN-E331996 [cTOD-16-L19]">
      <seq>gcgcgtttgggacccaagaactggttccaagaccatgaagctaaaaggtcatacagataatattagggctcttctgatagactccactggcaggttctgcatatctggatcctctgattccatgattagactatgggatctaggtcagcagcgttgcgtgcattcttatgctgtgcatacggattctgtatggtcacttgctagcactcctacgtttagtcatgtttatagtggtggaagagacctatctttatacttgacagatttggcaacaagggagagtgtattgatgtgcacaaaggaacaccccattttgcagttagcattgcatgatgatggcatttgggtggccacaactgattcatctgtacataggtgggctgcagaagtgcgtaatccccagaaagttttccaaagagggggctcattcttggctggaaacttgtccttttcccgggcaagggtttctctagaaggatctacacctgttcctgtttataaagaaccatctcttagcattcctggaactccaggaatagtgcagcatgagattttgaacaacagaagacatgtcctgactaaggatactgctggaacagtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaggtttcatttgagaagaagaaagaagaatttttgagatggtgagcatccctgcatggttcactgtggacactaagcttggaaacttgtctgtacatctggatacaccacaatgcttttctgctgagatgtactctgctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="14031" stop="18211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14331" g_stop="14423" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14424" i_stop="15353" i_length="930">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15354" g_stop="15389" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="129" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15390" i_stop="15666" i_length="277">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15667" g_stop="15787" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="250" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15788" i_stop="15908" i_length="121">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15909" g_stop="16145" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="487" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16146" i_stop="17253" i_length="1108">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17254" g_stop="17349" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="583" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17466" g_stop="17531" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="649" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17701" g_stop="17739" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="687" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17740" i_stop="17808" i_length="69">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17809" g_stop="17911" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="790" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E331996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14331" e_stop="14423"/>
          <exon e_start="15354" e_stop="15389"/>
          <exon e_start="15667" e_stop="15787"/>
          <exon e_start="15909" e_stop="16145"/>
          <exon e_start="17254" e_stop="17349"/>
          <exon e_start="17466" e_stop="17531"/>
          <exon e_start="17701" e_stop="17739"/>
          <exon e_start="17809" e_stop="17911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCGTTTGGGACCCAAGAACTGGTTCCAAGACCATGAAGCTAAAAGGTCATACAGATAATATTAGGGCTCTTCTGATAGACTCCACTGGCAGGTATGTTGAATAAACAATGATGCTATGAAGGCGTTTTGACTAGGTTATTTTCTCAAGTTCATCTAAAATGTCATTGCTTCCAGCCGATCTGAAACTATTTAACTTTGGTTAAGCATTGCTGAAGACAGATTATCATATAAACGTTTTGAAAAGGTGGAGGACATTTTACCTGTCATGGGTAGGGTATAATTCCCACAAAGTTTTGGTAATTAAAATATGTTAAAAATAATATAACATTATAGTACATAGATAGAATATAGAAAATTTTGTACTTCAAAAGAAAAAAATGTGCAGCAGCTGATTTAATTGTCTAGGCATAATAAATATATGTACATAATAATCACAAATCGTTAATCATAAAGCAAGATACTATGTAACTTATAATCAAATACTTGAAATAAAATTTAAAACAATTTTTTTCTAAGGCATATAGGATGGATAATCTAACGTGAAAGCACATACAAGGCGCATTTAGGGCAATTTTTGGTGAATACTCTGTGGCATAAAGCGTTAAGGGGCAAAATACCAAGGATACTGCATGAGTACCACTGTTGCTTTTGAAAACATTAATTTTTGTAGCAGAGTAATTTATTTTGTCCCATCACTCCAATGCCTTTTCTTGGGTCACAAGTCCACACTCCTGATTATAATAGATAGTTTAACCTAGCATTAGTTCAGTAAGTTAGTTGAAAACCTGAGAACAGAAAACTAGTTACATTATTGGTCGATGATCCATGCAACTGTAGATAAATACTTTTGTATCCATATCTAGATGTTCTTTTTTTGGCTTGCGTTCCTATACTGGTTGGCGCGGTCTTCAATGCCTTCAGTGTATGGTTAGTGCAACTTATTGAATTCTTTTGGATAATGGTCTTATCCTCCACTTTTATGATTCTTTTGAATTAATGGTCCAATCCTCCATTTTTGTAGGTTCTGCATATCTGGATCCTCTGATTCCATGATTAGGTAAGTATTGATAATTCCATTACTTAGTTTCCATAGACACTGGCTCCCTTGGCGTGGTAGTTGGTTTGGTGTTGAATCATTAGATTCTATCAAGTTCATATCAGTTTTTTAAACAGCTTGGTTCCACTGTTTTCATTGTTTTATGATGACCAGTTATACATTTTCTCCAAATAAGATCTTGTGGTCACACTTGTTTGGTCTTTTTTCATCTAATTACAAACTTCACTTTACCTCCAACATTTGGTTTATAACAAAAAACTATACCTCCACATTTCAGACTATGGGATCTAGGTCAGCAGCGTTGCGTGCATTCTTATGCTGTGCATACGGATTCTGTATGGTCACTTGCTAGCACTCCTACGTTTAGTCATGTTTATAGTGGTGGAAGAGACCTATCTGTAAGTGAGCTTAATACAACTTATCCAATATAGCTCTCTCTCTCTCTCTCTCTTACCCCCATACGCGGATTTCTATTCTCTCAGTCATTGTTTCCTTGCTAAATTTTGCTTGCACTTGCAGTTATACTTGACAGATTTGGCAACAAGGGAGAGTGTATTGATGTGCACAAAGGAACACCCCATTTTGCAGTTAGCATTGCATGATGATGGCATTTGGGTGGCCACAACTGATTCATCTGTACATAGGTGGGCTGCAGAAGTGCGTAATCCCCAGAAAGTTTTCCAAAGAGGGGGCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCTGTGAGTTTCAACCCCTTTATATCTTTTTTTTCCAAAGCCCCTCCCTAGGATCTCTGACCCGTTTTGCTCTCTTGGTGACTCGAACCCACAAACTTAGGGTTGAAGCTGAGGGGTCCTAACCATCTGAGCAACTCCCTGTCACCCCTTTATATCCTTTGTTGATGTTATCGCTAAGATTATTGGAACATATTTCTAATTGATGTATGGGGTTCCAAAATAGCTGCTATTTCTGGATTCCTCTTTAGAAAGGATGCATTTTAAAGATGAGCTGCTAATCAGAACTGGAAACTGGTTTTCTTTAACGAGTGAGCACATGAAGGATATTTCTCAATTTTGAGTTTTTATCAGTCTTTCTTGTCTCATGTGGAGTTCACTATGTTTCCAGATAAAATATGTACTCTTCTTATAATCTTTCTACTTCAAATTTTCCGGGTCTTGACTTAACCAACAGAGTAAGAAGAAAGTCTTATCAAATTCAAGTGGTTATTGATGTGCTAACGTAAGTTGCAATATGGAAGGCTCTGTTCGGGAACTTATTGAAGAGTAGTGAATTAGGACTTGTTATTTTTTTTGAGCTCTCCATGATCATATTCATCGTATTTTTGGTCAAAATCTTTTAATCCTTTATGTGGCCATATGATTGTACTTTATTCTTATTTGCTTTCAATTGCTTCTTTTGCGGACATCAGTAATGGGAAATATATTGAATCCTTAAGATTGTGTAATTTGGAATTGGAATTACTTTCTTTTCCTTTTTAGGATTACTTATAAGCACTATTTGAAGGACAATACAAAAAAAGATGTTTCGATTCAGATTCTCCTTCACATAGAAAGCATTTGCTGACTAGTTGTGTGCCCCTCTTTTGCAAGTTGTCTTGAGTTAGCCAAGCTTTTTTTGATAACTAGCCATGTGAAGCACATTACTTTCACTGGTATCCTAGAGTTCCAAACCTTCTTTAGTGACCTATAAGTTTTTTGGTGGGTATCTTTTACCAACATTGGAGTAATATGATATGAATCTATCTGCCCCTTCCATATTAAATTATATTCTCTTACTTCCACTTACATCTTTAAATATTAAAAAACTCACAATTGGTCAATAATGTAGGTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAGGTAAGTTTGTTTTGCATTTATACCCATGTGGCTTATGGCTTTATTGTTCTTAATGAGGTTAAACTGTCTTCTAAAAATATGATTTTGTAACCTGACAATGGCTTTTGTCTTTAAAGGATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAGGTTAGATTGTAATGTTTCAAGTGGCATGCTAAGTTACAATGGCCTGTTTTGAGCAAACTCTTTTGTTTAATTTTCTTTGAATTATGACAGCTGTCGCCTTCTACCTCTAAACGTTTTTTTTCATATTGTCTTTTTAACTTCTTTTCACCGTACTTTTGTCCAAATGTAGGTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATGGTAAATATCTTTGTAGAATTATCCAACTTCCACATATAATTTTTCTTCTGATATGATTTGCCTCTTCAGGTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATC</genome_strand>
        <mrna_strand>GCGCGTTTGGGACCCAAGAACTGGTTCCAAGACCATGAAGCTAAAAGGTCATACAGATAATATTAGGGCTCTTCTGATAGACTCCACTGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCATATCTGGATCCTCTGATTCCATGATTAG.....................................................................................................................................................................................................................................................................................ACTATGGGATCTAGGTCAGCAGCGTTGCGTGCATTCTTATGCTGTGCATACGGATTCTGTATGGTCACTTGCTAGCACTCCTACGTTTAGTCATGTTTATAGTGGTGGAAGAGACCTATCT.........................................................................................................................TTATACTTGACAGATTTGGCAACAAGGGAGAGTGTATTGATGTGCACAAAGGAACACCCCATTTTGCAGTTAGCATTGCATGATGATGGCATTTGGGTGGCCACAACTGATTCATCTGTACATAGGTGGGCTGCAGAAGTGCGTAATCCCCAGAAAGTTTTCCAAAGAGGGGGCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAG....................................................................................................................GATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAG.........................................................................................................................................................................GTTTCATTTGAGAAGAAGAAAGAAGAA-TTTTTGAGATG.....................................................................GTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332155" ref_strand="+" ref_description="SGN-E332155 [cTOD-16-J3]">
      <seq>gcgcgtttgggacccaagaactggttccaagaccatgaagctaaaaggtcatacagataatattagggctcttctgatagactccactggcaggttctgcatatctggatcctctgattccatgattagactatgggatctaggtcagcagcgttgcgtgcattcttatgctgtgcatacggattctgtatggtcacttgctagcactcctacgtttagtcatgtttatagtggtggaagagacctatctttatacttgacagatttggcaacaagggagagtgtattgatgtgcacaaaggaacaccccattttgcagttagcattgcatgatgatggcatttgggtggccacaactgattcatctgtacataggtgggctgcagaagtgcgtaatccccagaaagttttccaaagagggggctcattcttggctggaaacttgtccttttcccgggcaagggtttctctagaaggatctacacctgttcctgtttataaagaaccatctcttagcattcctggaactccaggaatagtgcagcatgagattttgaacaacagaagacatgtcctgactaaggatactgctggaacagtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaagtttcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="14031" stop="17839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14331" g_stop="14423" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14424" i_stop="15353" i_length="930">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15354" g_stop="15389" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="129" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15390" i_stop="15666" i_length="277">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15667" g_stop="15787" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="250" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15788" i_stop="15908" i_length="121">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15909" g_stop="16145" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="487" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16146" i_stop="17253" i_length="1108">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17254" g_stop="17349" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="583" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17466" g_stop="17531" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="649" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169">
            <donor d_prob="0.915" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17701" g_stop="17710" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="659" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E332155" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14331" e_stop="14423"/>
          <exon e_start="15354" e_stop="15389"/>
          <exon e_start="15667" e_stop="15787"/>
          <exon e_start="15909" e_stop="16145"/>
          <exon e_start="17254" e_stop="17349"/>
          <exon e_start="17466" e_stop="17531"/>
          <exon e_start="17701" e_stop="17710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCGTTTGGGACCCAAGAACTGGTTCCAAGACCATGAAGCTAAAAGGTCATACAGATAATATTAGGGCTCTTCTGATAGACTCCACTGGCAGGTATGTTGAATAAACAATGATGCTATGAAGGCGTTTTGACTAGGTTATTTTCTCAAGTTCATCTAAAATGTCATTGCTTCCAGCCGATCTGAAACTATTTAACTTTGGTTAAGCATTGCTGAAGACAGATTATCATATAAACGTTTTGAAAAGGTGGAGGACATTTTACCTGTCATGGGTAGGGTATAATTCCCACAAAGTTTTGGTAATTAAAATATGTTAAAAATAATATAACATTATAGTACATAGATAGAATATAGAAAATTTTGTACTTCAAAAGAAAAAAATGTGCAGCAGCTGATTTAATTGTCTAGGCATAATAAATATATGTACATAATAATCACAAATCGTTAATCATAAAGCAAGATACTATGTAACTTATAATCAAATACTTGAAATAAAATTTAAAACAATTTTTTTCTAAGGCATATAGGATGGATAATCTAACGTGAAAGCACATACAAGGCGCATTTAGGGCAATTTTTGGTGAATACTCTGTGGCATAAAGCGTTAAGGGGCAAAATACCAAGGATACTGCATGAGTACCACTGTTGCTTTTGAAAACATTAATTTTTGTAGCAGAGTAATTTATTTTGTCCCATCACTCCAATGCCTTTTCTTGGGTCACAAGTCCACACTCCTGATTATAATAGATAGTTTAACCTAGCATTAGTTCAGTAAGTTAGTTGAAAACCTGAGAACAGAAAACTAGTTACATTATTGGTCGATGATCCATGCAACTGTAGATAAATACTTTTGTATCCATATCTAGATGTTCTTTTTTTGGCTTGCGTTCCTATACTGGTTGGCGCGGTCTTCAATGCCTTCAGTGTATGGTTAGTGCAACTTATTGAATTCTTTTGGATAATGGTCTTATCCTCCACTTTTATGATTCTTTTGAATTAATGGTCCAATCCTCCATTTTTGTAGGTTCTGCATATCTGGATCCTCTGATTCCATGATTAGGTAAGTATTGATAATTCCATTACTTAGTTTCCATAGACACTGGCTCCCTTGGCGTGGTAGTTGGTTTGGTGTTGAATCATTAGATTCTATCAAGTTCATATCAGTTTTTTAAACAGCTTGGTTCCACTGTTTTCATTGTTTTATGATGACCAGTTATACATTTTCTCCAAATAAGATCTTGTGGTCACACTTGTTTGGTCTTTTTTCATCTAATTACAAACTTCACTTTACCTCCAACATTTGGTTTATAACAAAAAACTATACCTCCACATTTCAGACTATGGGATCTAGGTCAGCAGCGTTGCGTGCATTCTTATGCTGTGCATACGGATTCTGTATGGTCACTTGCTAGCACTCCTACGTTTAGTCATGTTTATAGTGGTGGAAGAGACCTATCTGTAAGTGAGCTTAATACAACTTATCCAATATAGCTCTCTCTCTCTCTCTCTCTTACCCCCATACGCGGATTTCTATTCTCTCAGTCATTGTTTCCTTGCTAAATTTTGCTTGCACTTGCAGTTATACTTGACAGATTTGGCAACAAGGGAGAGTGTATTGATGTGCACAAAGGAACACCCCATTTTGCAGTTAGCATTGCATGATGATGGCATTTGGGTGGCCACAACTGATTCATCTGTACATAGGTGGGCTGCAGAAGTGCGTAATCCCCAGAAAGTTTTCCAAAGAGGGGGCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCTGTGAGTTTCAACCCCTTTATATCTTTTTTTTCCAAAGCCCCTCCCTAGGATCTCTGACCCGTTTTGCTCTCTTGGTGACTCGAACCCACAAACTTAGGGTTGAAGCTGAGGGGTCCTAACCATCTGAGCAACTCCCTGTCACCCCTTTATATCCTTTGTTGATGTTATCGCTAAGATTATTGGAACATATTTCTAATTGATGTATGGGGTTCCAAAATAGCTGCTATTTCTGGATTCCTCTTTAGAAAGGATGCATTTTAAAGATGAGCTGCTAATCAGAACTGGAAACTGGTTTTCTTTAACGAGTGAGCACATGAAGGATATTTCTCAATTTTGAGTTTTTATCAGTCTTTCTTGTCTCATGTGGAGTTCACTATGTTTCCAGATAAAATATGTACTCTTCTTATAATCTTTCTACTTCAAATTTTCCGGGTCTTGACTTAACCAACAGAGTAAGAAGAAAGTCTTATCAAATTCAAGTGGTTATTGATGTGCTAACGTAAGTTGCAATATGGAAGGCTCTGTTCGGGAACTTATTGAAGAGTAGTGAATTAGGACTTGTTATTTTTTTTGAGCTCTCCATGATCATATTCATCGTATTTTTGGTCAAAATCTTTTAATCCTTTATGTGGCCATATGATTGTACTTTATTCTTATTTGCTTTCAATTGCTTCTTTTGCGGACATCAGTAATGGGAAATATATTGAATCCTTAAGATTGTGTAATTTGGAATTGGAATTACTTTCTTTTCCTTTTTAGGATTACTTATAAGCACTATTTGAAGGACAATACAAAAAAAGATGTTTCGATTCAGATTCTCCTTCACATAGAAAGCATTTGCTGACTAGTTGTGTGCCCCTCTTTTGCAAGTTGTCTTGAGTTAGCCAAGCTTTTTTTGATAACTAGCCATGTGAAGCACATTACTTTCACTGGTATCCTAGAGTTCCAAACCTTCTTTAGTGACCTATAAGTTTTTTGGTGGGTATCTTTTACCAACATTGGAGTAATATGATATGAATCTATCTGCCCCTTCCATATTAAATTATATTCTCTTACTTCCACTTACATCTTTAAATATTAAAAAACTCACAATTGGTCAATAATGTAGGTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAGGTAAGTTTGTTTTGCATTTATACCCATGTGGCTTATGGCTTTATTGTTCTTAATGAGGTTAAACTGTCTTCTAAAAATATGATTTTGTAACCTGACAATGGCTTTTGTCTTTAAAGGATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAGGTTAGATTGTAATGTTTCAAGTGGCATGCTAAGTTACAATGGCCTGTTTTGAGCAAACTCTTTTGTTTAATTTTCTTTGAATTATGACAGCTGTCGCCTTCTACCTCTAAACGTTTTTTTTCATATTGTCTTTTTAACTTCTTTTCACCGTACTTTTGTCCAAATGTAGGTTTCATTTG</genome_strand>
        <mrna_strand>GCGCGTTTGGGACCCAAGAACTGGTTCCAAGACCATGAAGCTAAAAGGTCATACAGATAATATTAGGGCTCTTCTGATAGACTCCACTGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCATATCTGGATCCTCTGATTCCATGATTAG.....................................................................................................................................................................................................................................................................................ACTATGGGATCTAGGTCAGCAGCGTTGCGTGCATTCTTATGCTGTGCATACGGATTCTGTATGGTCACTTGCTAGCACTCCTACGTTTAGTCATGTTTATAGTGGTGGAAGAGACCTATCT.........................................................................................................................TTATACTTGACAGATTTGGCAACAAGGGAGAGTGTATTGATGTGCACAAAGGAACACCCCATTTTGCAGTTAGCATTGCATGATGATGGCATTTGGGTGGCCACAACTGATTCATCTGTACATAGGTGGGCTGCAGAAGTGCGTAATCCCCAGAAAGTTTTCCAAAGAGGGGGCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAG....................................................................................................................GATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAA.........................................................................................................................................................................GTTTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466044" ref_strand="+" ref_description="SGN-E466044 [cPRO-23-C19]">
      <seq>attttgcagttagcattgcatgatgatggcatttgggtggccacaactgattcatctgtacataggtgggctgcagaagtgcgtaatccccagaaagttttccaaagagggggctcattcttggctggaaacttgtccttttcccgggcaagggtttctctagaaggatctacacctgttcctgtttataaagaaccatctcttagcattcctggaactccaggaatagtgcagcatgagattttgaacaacagaaaacatgtcctgactaaggatactgctggtacagtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaggtttcatttgagaagaagaaagaagaactttttgagatggtgagcatccctgcatggttcactgtggacactaggcttggaagcttggctgtacatctggatacgccacaatgcttttctgctgagatgtactctgctgatctccacattccagggaagcctgaagatgacaaggttaatttggcacgagaaacccttaaagggctgttggctcattggttagccaaaagaaaacagagatatggatctcaagctttagccaatggggaagccccagctggaaaggatgtacctacaaggaatctgaccgcgtcaaaaattgaagtggacggtagtgctgacaatgatgctgcagtatatcctccctttgaattttcagcagcatgccctccatcaattattactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="15669" stop="19145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15969" g_stop="16145" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16146" i_stop="17253" i_length="1108">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17254" g_stop="17349" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="273" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17466" g_stop="17531" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="339" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17701" g_stop="17739" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="378" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17740" i_stop="17808" i_length="69">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17809" g_stop="17943" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="513" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17944" i_stop="18612" i_length="669">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18613" g_stop="18845" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="746" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E466044" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15969" e_stop="16145"/>
          <exon e_start="17254" e_stop="17349"/>
          <exon e_start="17466" e_stop="17531"/>
          <exon e_start="17701" e_stop="17739"/>
          <exon e_start="17809" e_stop="17943"/>
          <exon e_start="18613" e_stop="18845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGCAGTTAGCATTGCATGATGATGGCATTTGGGTGGCCACAACTGATTCATCTGTACATAGGTGGGCTGCAGAAGTGCGTAATCCCCAGAAAGTTTTCCAAAGAGGGGGCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCTGTGAGTTTCAACCCCTTTATATCTTTTTTTTCCAAAGCCCCTCCCTAGGATCTCTGACCCGTTTTGCTCTCTTGGTGACTCGAACCCACAAACTTAGGGTTGAAGCTGAGGGGTCCTAACCATCTGAGCAACTCCCTGTCACCCCTTTATATCCTTTGTTGATGTTATCGCTAAGATTATTGGAACATATTTCTAATTGATGTATGGGGTTCCAAAATAGCTGCTATTTCTGGATTCCTCTTTAGAAAGGATGCATTTTAAAGATGAGCTGCTAATCAGAACTGGAAACTGGTTTTCTTTAACGAGTGAGCACATGAAGGATATTTCTCAATTTTGAGTTTTTATCAGTCTTTCTTGTCTCATGTGGAGTTCACTATGTTTCCAGATAAAATATGTACTCTTCTTATAATCTTTCTACTTCAAATTTTCCGGGTCTTGACTTAACCAACAGAGTAAGAAGAAAGTCTTATCAAATTCAAGTGGTTATTGATGTGCTAACGTAAGTTGCAATATGGAAGGCTCTGTTCGGGAACTTATTGAAGAGTAGTGAATTAGGACTTGTTATTTTTTTTGAGCTCTCCATGATCATATTCATCGTATTTTTGGTCAAAATCTTTTAATCCTTTATGTGGCCATATGATTGTACTTTATTCTTATTTGCTTTCAATTGCTTCTTTTGCGGACATCAGTAATGGGAAATATATTGAATCCTTAAGATTGTGTAATTTGGAATTGGAATTACTTTCTTTTCCTTTTTAGGATTACTTATAAGCACTATTTGAAGGACAATACAAAAAAAGATGTTTCGATTCAGATTCTCCTTCACATAGAAAGCATTTGCTGACTAGTTGTGTGCCCCTCTTTTGCAAGTTGTCTTGAGTTAGCCAAGCTTTTTTTGATAACTAGCCATGTGAAGCACATTACTTTCACTGGTATCCTAGAGTTCCAAACCTTCTTTAGTGACCTATAAGTTTTTTGGTGGGTATCTTTTACCAACATTGGAGTAATATGATATGAATCTATCTGCCCCTTCCATATTAAATTATATTCTCTTACTTCCACTTACATCTTTAAATATTAAAAAACTCACAATTGGTCAATAATGTAGGTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAGGTAAGTTTGTTTTGCATTTATACCCATGTGGCTTATGGCTTTATTGTTCTTAATGAGGTTAAACTGTCTTCTAAAAATATGATTTTGTAACCTGACAATGGCTTTTGTCTTTAAAGGATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAGGTTAGATTGTAATGTTTCAAGTGGCATGCTAAGTTACAATGGCCTGTTTTGAGCAAACTCTTTTGTTTAATTTTCTTTGAATTATGACAGCTGTCGCCTTCTACCTCTAAACGTTTTTTTTCATATTGTCTTTTTAACTTCTTTTCACCGTACTTTTGTCCAAATGTAGGTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATGGTAAATATCTTTGTAGAATTATCCAACTTCCACATATAATTTTTCTTCTGATATGATTTGCCTCTTCAGGTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAGGTATCTACAACGGTTTTTGTATCTTCTATTTTCTGCTTGGTTCCTAAATCTATTTTCATTTATTCCCGTTACTGCCTTCCTATTCTTGAAGTATAGTCTCTTGGCCGCTGTTTTTGTTAGTTTTTTTTTTCAAGATTGAAAGCCAGAAAAGATTGTTTTACCGGAACTAGTTCCGATGTTTTCTAGGGTTCCTATTAGTTTTGTTATCAAGTTGCATGTGATTGGGGGGGGGGGGGGGAGACAAATGTGAGAATTAGGGAATATATAGTTTCAGAGAATTCCTAATCTGTCTCCAGACAAATCATTTAGTATTTGAAGGAAATGGGTCCAAATGGAGCATATAGAAGATTTATAAAATTCAACCTAAATAGTTTTGGATAAGGCATAATACTTATTATTCTTGTAAGTAAGTACGTGGATGGTTTAGCAGAATGTATCTCAGTCCTCAGACATGACTTTTTTAGTTGTGATCTTTTAACTAGTTCTGGGAGTTGTACTATAGCAAATGGTGTGCATAAGACGCACTCAATTCCTGGAAATGGTTCTTCTTATTAATTAATTAATCAATTAAATTCTTTTAATAACTTCCTGATTTATCATTCATTTGATAAATTTTTGTATATTTCTGCGAGAGACGAACTGAAATTGTGATCGGCTTTTTGATGCTAGGTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGA</genome_strand>
        <mrna_strand>ATTTTGCAGTTAGCATTGCATGATGATGGCATTTGGGTGGCCACAACTGATTCATCTGTACATAGGTGGGCTGCAGAAGTGCGTAATCCCCAGAAAGTTTTCCAAAGAGGGGGCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAAACATGTCCTGACTAAG....................................................................................................................GATACTGCTGGTACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAG.........................................................................................................................................................................GTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATG.....................................................................GTGAGCATCCCTGCATGGTTCACTGTGGACACTAGGCTTGGAAGCTTGGCTGTACATCTGGATACGCCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATATGGATCTCAAGCTTTAGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329357" ref_strand="+" ref_description="SGN-E329357 [cTOD-2-G9]">
      <seq>ctgcagaagtgcgtaatccccagaaagttttccaaagagggggctcattcttggctggaaacttgtccttttcccgggcaagggtttctctagaaggatctacacctgttcctgtttataaagaaccatctcttagcattcctggaactccaggaatagtgcagcatgagattttgaacaacagaagacatgtcctgactaaggatactgctggaacagtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaggtttcatttgagaagaagaaagaagaactttttgagatggtgagcatccctgcatggttcactgtggacactaagcttggaaacttgtctgtacatctggatacaccacaatgcttttctgctgagatgtactctgctgatctccacattccagggaagcctgaagatgacaaggttaatttggcacgagaaacccttaaagggctgttggctcattggttagccaaaagaaaacagagatttggatctcaagctttggccaatggggaagccccagctggaaaggatgtaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="15739" stop="19033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16039" g_stop="16145" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16146" i_stop="17253" i_length="1108">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17254" g_stop="17349" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="203" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17466" g_stop="17531" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="269" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17701" g_stop="17739" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="308" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17740" i_stop="17808" i_length="69">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17809" g_stop="17943" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="443" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17944" i_stop="18612" i_length="669">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18613" g_stop="18733" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="564" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E329357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16039" e_stop="16145"/>
          <exon e_start="17254" e_stop="17349"/>
          <exon e_start="17466" e_stop="17531"/>
          <exon e_start="17701" e_stop="17739"/>
          <exon e_start="17809" e_stop="17943"/>
          <exon e_start="18613" e_stop="18733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGAAGTGCGTAATCCCCAGAAAGTTTTCCAAAGAGGGGGCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCTGTGAGTTTCAACCCCTTTATATCTTTTTTTTCCAAAGCCCCTCCCTAGGATCTCTGACCCGTTTTGCTCTCTTGGTGACTCGAACCCACAAACTTAGGGTTGAAGCTGAGGGGTCCTAACCATCTGAGCAACTCCCTGTCACCCCTTTATATCCTTTGTTGATGTTATCGCTAAGATTATTGGAACATATTTCTAATTGATGTATGGGGTTCCAAAATAGCTGCTATTTCTGGATTCCTCTTTAGAAAGGATGCATTTTAAAGATGAGCTGCTAATCAGAACTGGAAACTGGTTTTCTTTAACGAGTGAGCACATGAAGGATATTTCTCAATTTTGAGTTTTTATCAGTCTTTCTTGTCTCATGTGGAGTTCACTATGTTTCCAGATAAAATATGTACTCTTCTTATAATCTTTCTACTTCAAATTTTCCGGGTCTTGACTTAACCAACAGAGTAAGAAGAAAGTCTTATCAAATTCAAGTGGTTATTGATGTGCTAACGTAAGTTGCAATATGGAAGGCTCTGTTCGGGAACTTATTGAAGAGTAGTGAATTAGGACTTGTTATTTTTTTTGAGCTCTCCATGATCATATTCATCGTATTTTTGGTCAAAATCTTTTAATCCTTTATGTGGCCATATGATTGTACTTTATTCTTATTTGCTTTCAATTGCTTCTTTTGCGGACATCAGTAATGGGAAATATATTGAATCCTTAAGATTGTGTAATTTGGAATTGGAATTACTTTCTTTTCCTTTTTAGGATTACTTATAAGCACTATTTGAAGGACAATACAAAAAAAGATGTTTCGATTCAGATTCTCCTTCACATAGAAAGCATTTGCTGACTAGTTGTGTGCCCCTCTTTTGCAAGTTGTCTTGAGTTAGCCAAGCTTTTTTTGATAACTAGCCATGTGAAGCACATTACTTTCACTGGTATCCTAGAGTTCCAAACCTTCTTTAGTGACCTATAAGTTTTTTGGTGGGTATCTTTTACCAACATTGGAGTAATATGATATGAATCTATCTGCCCCTTCCATATTAAATTATATTCTCTTACTTCCACTTACATCTTTAAATATTAAAAAACTCACAATTGGTCAATAATGTAGGTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAGGTAAGTTTGTTTTGCATTTATACCCATGTGGCTTATGGCTTTATTGTTCTTAATGAGGTTAAACTGTCTTCTAAAAATATGATTTTGTAACCTGACAATGGCTTTTGTCTTTAAAGGATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAGGTTAGATTGTAATGTTTCAAGTGGCATGCTAAGTTACAATGGCCTGTTTTGAGCAAACTCTTTTGTTTAATTTTCTTTGAATTATGACAGCTGTCGCCTTCTACCTCTAAACGTTTTTTTTCATATTGTCTTTTTAACTTCTTTTCACCGTACTTTTGTCCAAATGTAGGTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATGGTAAATATCTTTGTAGAATTATCCAACTTCCACATATAATTTTTCTTCTGATATGATTTGCCTCTTCAGGTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAGGTATCTACAACGGTTTTTGTATCTTCTATTTTCTGCTTGGTTCCTAAATCTATTTTCATTTATTCCCGTTACTGCCTTCCTATTCTTGAAGTATAGTCTCTTGGCCGCTGTTTTTGTTAGTTTTTTTTTTCAAGATTGAAAGCCAGAAAAGATTGTTTTACCGGAACTAGTTCCGATGTTTTCTAGGGTTCCTATTAGTTTTGTTATCAAGTTGCATGTGATTGGGGGGGGGGGGGGGAGACAAATGTGAGAATTAGGGAATATATAGTTTCAGAGAATTCCTAATCTGTCTCCAGACAAATCATTTAGTATTTGAAGGAAATGGGTCCAAATGGAGCATATAGAAGATTTATAAAATTCAACCTAAATAGTTTTGGATAAGGCATAATACTTATTATTCTTGTAAGTAAGTACGTGGATGGTTTAGCAGAATGTATCTCAGTCCTCAGACATGACTTTTTTAGTTGTGATCTTTTAACTAGTTCTGGGAGTTGTACTATAGCAAATGGTGTGCATAAGACGCACTCAATTCCTGGAAATGGTTCTTCTTATTAATTAATTAATCAATTAAATTCTTTTAATAACTTCCTGATTTATCATTCATTTGATAAATTTTTGTATATTTCTGCGAGAGACGAACTGAAATTGTGATCGGCTTTTTGATGCTAGGTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTA</genome_strand>
        <mrna_strand>CTGCAGAAGTGCGTAATCCCCAGAAAGTTTTCCAAAGAGGGGGCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAG....................................................................................................................GATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAG.........................................................................................................................................................................GTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATG.....................................................................GTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737617" ref_strand="+" ref_description="SGN-E737617 [LC10CC11]">
      <seq>cccgggctgcaggattcggcacgagggctcattcttggctggaaacttgtccttttcccgggcaagggtttctctagaaggatctacacctgttcctgtttataaagaaccatctcttagcattcctggaactccaggaatagtgcagcatgagattttgaacaacagaagacatgtcctgactaaggatactgctggaacagtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaggtttcatttgagaagaagaaagaagaactttttgagatggtgagcatccctgcatggttcactgtggacactaagcttggaaacttgtctgtacatctggatacaccacaatgcttttctgctgagatgtactctgctgatctccacattccagggaagcctgaagatgacaaggttaatttggcacgagaaacccttaaagggctgttggctcattggttagccaaaagaaaacagagatttggatctcaagctttggccaatggggaagccccagctggaaaggatgtacctacaaggaatctgaccgcgtcaaaaattgaagtggacggtagtgctgacaatgatgctgcagtatatcctccctttgaattttcagcagcatgccctccatcaattattactgagggttctcaaagtggtccatggaggaaaaagattaccgacttagatggaacagaagatgaaaaggacatgccatggtgggtagtggattgtgtgatgaacaatcggttgcctcccagggaaaataccaaatgtagcttctacttacatccatgcgagggttctactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="15777" stop="19550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16078" g_stop="16145" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="91" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16146" i_stop="17253" i_length="1108">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17254" g_stop="17349" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="187" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17466" g_stop="17531" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="253" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17701" g_stop="17739" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="292" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17740" i_stop="17808" i_length="69">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17809" g_stop="17943" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="427" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17944" i_stop="18612" i_length="669">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18613" g_stop="18974" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="789" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18975" i_stop="19211" i_length="237">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19212" g_stop="19250" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="828" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E737617" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16078" e_stop="16145"/>
          <exon e_start="17254" e_stop="17349"/>
          <exon e_start="17466" e_stop="17531"/>
          <exon e_start="17701" e_stop="17739"/>
          <exon e_start="17809" e_stop="17943"/>
          <exon e_start="18613" e_stop="18974"/>
          <exon e_start="19212" e_stop="19250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCTGTGAGTTTCAACCCCTTTATATCTTTTTTTTCCAAAGCCCCTCCCTAGGATCTCTGACCCGTTTTGCTCTCTTGGTGACTCGAACCCACAAACTTAGGGTTGAAGCTGAGGGGTCCTAACCATCTGAGCAACTCCCTGTCACCCCTTTATATCCTTTGTTGATGTTATCGCTAAGATTATTGGAACATATTTCTAATTGATGTATGGGGTTCCAAAATAGCTGCTATTTCTGGATTCCTCTTTAGAAAGGATGCATTTTAAAGATGAGCTGCTAATCAGAACTGGAAACTGGTTTTCTTTAACGAGTGAGCACATGAAGGATATTTCTCAATTTTGAGTTTTTATCAGTCTTTCTTGTCTCATGTGGAGTTCACTATGTTTCCAGATAAAATATGTACTCTTCTTATAATCTTTCTACTTCAAATTTTCCGGGTCTTGACTTAACCAACAGAGTAAGAAGAAAGTCTTATCAAATTCAAGTGGTTATTGATGTGCTAACGTAAGTTGCAATATGGAAGGCTCTGTTCGGGAACTTATTGAAGAGTAGTGAATTAGGACTTGTTATTTTTTTTGAGCTCTCCATGATCATATTCATCGTATTTTTGGTCAAAATCTTTTAATCCTTTATGTGGCCATATGATTGTACTTTATTCTTATTTGCTTTCAATTGCTTCTTTTGCGGACATCAGTAATGGGAAATATATTGAATCCTTAAGATTGTGTAATTTGGAATTGGAATTACTTTCTTTTCCTTTTTAGGATTACTTATAAGCACTATTTGAAGGACAATACAAAAAAAGATGTTTCGATTCAGATTCTCCTTCACATAGAAAGCATTTGCTGACTAGTTGTGTGCCCCTCTTTTGCAAGTTGTCTTGAGTTAGCCAAGCTTTTTTTGATAACTAGCCATGTGAAGCACATTACTTTCACTGGTATCCTAGAGTTCCAAACCTTCTTTAGTGACCTATAAGTTTTTTGGTGGGTATCTTTTACCAACATTGGAGTAATATGATATGAATCTATCTGCCCCTTCCATATTAAATTATATTCTCTTACTTCCACTTACATCTTTAAATATTAAAAAACTCACAATTGGTCAATAATGTAGGTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAGGTAAGTTTGTTTTGCATTTATACCCATGTGGCTTATGGCTTTATTGTTCTTAATGAGGTTAAACTGTCTTCTAAAAATATGATTTTGTAACCTGACAATGGCTTTTGTCTTTAAAGGATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAGGTTAGATTGTAATGTTTCAAGTGGCATGCTAAGTTACAATGGCCTGTTTTGAGCAAACTCTTTTGTTTAATTTTCTTTGAATTATGACAGCTGTCGCCTTCTACCTCTAAACGTTTTTTTTCATATTGTCTTTTTAACTTCTTTTCACCGTACTTTTGTCCAAATGTAGGTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATGGTAAATATCTTTGTAGAATTATCCAACTTCCACATATAATTTTTCTTCTGATATGATTTGCCTCTTCAGGTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAGGTATCTACAACGGTTTTTGTATCTTCTATTTTCTGCTTGGTTCCTAAATCTATTTTCATTTATTCCCGTTACTGCCTTCCTATTCTTGAAGTATAGTCTCTTGGCCGCTGTTTTTGTTAGTTTTTTTTTTCAAGATTGAAAGCCAGAAAAGATTGTTTTACCGGAACTAGTTCCGATGTTTTCTAGGGTTCCTATTAGTTTTGTTATCAAGTTGCATGTGATTGGGGGGGGGGGGGGGAGACAAATGTGAGAATTAGGGAATATATAGTTTCAGAGAATTCCTAATCTGTCTCCAGACAAATCATTTAGTATTTGAAGGAAATGGGTCCAAATGGAGCATATAGAAGATTTATAAAATTCAACCTAAATAGTTTTGGATAAGGCATAATACTTATTATTCTTGTAAGTAAGTACGTGGATGGTTTAGCAGAATGTATCTCAGTCCTCAGACATGACTTTTTTAGTTGTGATCTTTTAACTAGTTCTGGGAGTTGTACTATAGCAAATGGTGTGCATAAGACGCACTCAATTCCTGGAAATGGTTCTTCTTATTAATTAATTAATCAATTAAATTCTTTTAATAACTTCCTGATTTATCATTCATTTGATAAATTTTTGTATATTTCTGCGAGAGACGAACTGAAATTGTGATCGGCTTTTTGATGCTAGGTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAAGTAATATTCCAATATAACTGTATTCTACTTTCTTCATAGTGCTCAACTTGCATTTTGAACTTACAGAGCTGAGAGCACTTGTTTAGAACTAAAAGGAAGTCTTTCTGGAGGCACTTAACATTATCTCAACTCTCTGAGTTGCAGCAATGCTTACAAAACACTTTTTGATCTTCCATCTTTATGTGCAAAGTCACTTTTTCTTGACCATTTTCTCCCCTCATCTTAATGGATTTGCAGATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGT</genome_strand>
        <mrna_strand>AGGGCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAG....................................................................................................................GATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAG.........................................................................................................................................................................GTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATG.....................................................................GTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAA.............................................................................................................................................................................................................................................ATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738156" ref_strand="+" ref_description="SGN-E738156 [LC12CD05]">
      <seq>gctcattcttggctggaaacttgtccttttcccgggcaagggtttctctagaaggatctacacctgttcctgtttataaagaaccatctcttagcattcctggaactccaggaatagtgcagcatgagattttgaacaacagaagacatgtcctgactaaggatactgctggaacagtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaggtttcatttgagaagaagaaagaagaactttttgagatggtgagcatccctgcatggttcactgtggacactaagcttggaaacttgtctgtacatctggatacaccacaatgcttttctgctgagatgtactctgctgatctccacattccagggaagcctgaagatgacaaggttaatttggcacgagaaacccttaaagggctgttggctcattggttagccaaaagaaaacagagatttggatctcaagctttggccaatggggaagccccagctggaaaggatgtacctacaaggaatctgaccgcgtcaaaaattgaagtggacggtagtgctgacaatgatgctgcagtatatcctccctttgaattttcagcagcatgccctccatcaattattactgagggttctcaaagtggtccatggaggaaaaagattaccgacttagatggaacagaagatgaaaaggacatgccatggtgggtagtggattgtgtgatgaacaatcggttgcctcccagggaaaataccaaatgtagcttctacttacatccatgcgagggttctactgttcagatccttacccagggaaagctgagtgcgcctcgcatattaagaattcacaaagtcgtcaactatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="15781" stop="20776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16081" g_stop="16145" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16146" i_stop="17253" i_length="1108">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17254" g_stop="17349" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="161" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17466" g_stop="17531" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="227" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17701" g_stop="17739" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="266" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17740" i_stop="17808" i_length="69">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17809" g_stop="17943" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="401" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17944" i_stop="18612" i_length="669">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18613" g_stop="18974" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="763" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18975" i_stop="19211" i_length="237">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19212" g_stop="19305" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="857" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19306" i_stop="20459" i_length="1154">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20460" g_stop="20476" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="874" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E738156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16081" e_stop="16145"/>
          <exon e_start="17254" e_stop="17349"/>
          <exon e_start="17466" e_stop="17531"/>
          <exon e_start="17701" e_stop="17739"/>
          <exon e_start="17809" e_stop="17943"/>
          <exon e_start="18613" e_stop="18974"/>
          <exon e_start="19212" e_stop="19305"/>
          <exon e_start="20460" e_stop="20476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCTGTGAGTTTCAACCCCTTTATATCTTTTTTTTCCAAAGCCCCTCCCTAGGATCTCTGACCCGTTTTGCTCTCTTGGTGACTCGAACCCACAAACTTAGGGTTGAAGCTGAGGGGTCCTAACCATCTGAGCAACTCCCTGTCACCCCTTTATATCCTTTGTTGATGTTATCGCTAAGATTATTGGAACATATTTCTAATTGATGTATGGGGTTCCAAAATAGCTGCTATTTCTGGATTCCTCTTTAGAAAGGATGCATTTTAAAGATGAGCTGCTAATCAGAACTGGAAACTGGTTTTCTTTAACGAGTGAGCACATGAAGGATATTTCTCAATTTTGAGTTTTTATCAGTCTTTCTTGTCTCATGTGGAGTTCACTATGTTTCCAGATAAAATATGTACTCTTCTTATAATCTTTCTACTTCAAATTTTCCGGGTCTTGACTTAACCAACAGAGTAAGAAGAAAGTCTTATCAAATTCAAGTGGTTATTGATGTGCTAACGTAAGTTGCAATATGGAAGGCTCTGTTCGGGAACTTATTGAAGAGTAGTGAATTAGGACTTGTTATTTTTTTTGAGCTCTCCATGATCATATTCATCGTATTTTTGGTCAAAATCTTTTAATCCTTTATGTGGCCATATGATTGTACTTTATTCTTATTTGCTTTCAATTGCTTCTTTTGCGGACATCAGTAATGGGAAATATATTGAATCCTTAAGATTGTGTAATTTGGAATTGGAATTACTTTCTTTTCCTTTTTAGGATTACTTATAAGCACTATTTGAAGGACAATACAAAAAAAGATGTTTCGATTCAGATTCTCCTTCACATAGAAAGCATTTGCTGACTAGTTGTGTGCCCCTCTTTTGCAAGTTGTCTTGAGTTAGCCAAGCTTTTTTTGATAACTAGCCATGTGAAGCACATTACTTTCACTGGTATCCTAGAGTTCCAAACCTTCTTTAGTGACCTATAAGTTTTTTGGTGGGTATCTTTTACCAACATTGGAGTAATATGATATGAATCTATCTGCCCCTTCCATATTAAATTATATTCTCTTACTTCCACTTACATCTTTAAATATTAAAAAACTCACAATTGGTCAATAATGTAGGTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAGGTAAGTTTGTTTTGCATTTATACCCATGTGGCTTATGGCTTTATTGTTCTTAATGAGGTTAAACTGTCTTCTAAAAATATGATTTTGTAACCTGACAATGGCTTTTGTCTTTAAAGGATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAGGTTAGATTGTAATGTTTCAAGTGGCATGCTAAGTTACAATGGCCTGTTTTGAGCAAACTCTTTTGTTTAATTTTCTTTGAATTATGACAGCTGTCGCCTTCTACCTCTAAACGTTTTTTTTCATATTGTCTTTTTAACTTCTTTTCACCGTACTTTTGTCCAAATGTAGGTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATGGTAAATATCTTTGTAGAATTATCCAACTTCCACATATAATTTTTCTTCTGATATGATTTGCCTCTTCAGGTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAGGTATCTACAACGGTTTTTGTATCTTCTATTTTCTGCTTGGTTCCTAAATCTATTTTCATTTATTCCCGTTACTGCCTTCCTATTCTTGAAGTATAGTCTCTTGGCCGCTGTTTTTGTTAGTTTTTTTTTTCAAGATTGAAAGCCAGAAAAGATTGTTTTACCGGAACTAGTTCCGATGTTTTCTAGGGTTCCTATTAGTTTTGTTATCAAGTTGCATGTGATTGGGGGGGGGGGGGGGAGACAAATGTGAGAATTAGGGAATATATAGTTTCAGAGAATTCCTAATCTGTCTCCAGACAAATCATTTAGTATTTGAAGGAAATGGGTCCAAATGGAGCATATAGAAGATTTATAAAATTCAACCTAAATAGTTTTGGATAAGGCATAATACTTATTATTCTTGTAAGTAAGTACGTGGATGGTTTAGCAGAATGTATCTCAGTCCTCAGACATGACTTTTTTAGTTGTGATCTTTTAACTAGTTCTGGGAGTTGTACTATAGCAAATGGTGTGCATAAGACGCACTCAATTCCTGGAAATGGTTCTTCTTATTAATTAATTAATCAATTAAATTCTTTTAATAACTTCCTGATTTATCATTCATTTGATAAATTTTTGTATATTTCTGCGAGAGACGAACTGAAATTGTGATCGGCTTTTTGATGCTAGGTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAAGTAATATTCCAATATAACTGTATTCTACTTTCTTCATAGTGCTCAACTTGCATTTTGAACTTACAGAGCTGAGAGCACTTGTTTAGAACTAAAAGGAAGTCTTTCTGGAGGCACTTAACATTATCTCAACTCTCTGAGTTGCAGCAATGCTTACAAAACACTTTTTGATCTTCCATCTTTATGTGCAAAGTCACTTTTTCTTGACCATTTTCTCCCCTCATCTTAATGGATTTGCAGATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCCAGGGAAAGCTGAGTGCGCCTCGCATATTAAGAATTCACAAAGTAAGTATCTTTTCCTTGAATCTCGTGGTGGAGTCAGTATTGTGGTGATTTACATTGGCCTTTGTTGGTTTACTAAGTCATTTGTTGTATGCATATTACCAGGATACTTGAAGTTTTAAACGATTCTGTTTTCCTGACCCATTATGACTTGTGTCTCATGCATTTAAATAGTAAAGAAACTCAAAGATATGACAATAACATACCCAGTGAAATCCTACAAGTGGGATCTAGGGAGAGTAGAGCGCATGCAGTCCTTACCCTACTTCGTAGAGGTAGAGAGGCTGTTTCCGAAGGATCCTTGTCTCAATTGAAAGAAACTCAAAAGATATACTGGAGGAATATGCCAATGAACTATCTGAAGATTTGTATATGTTGGTAACACCTGTGTTCTTGAGAGAAAAATGGTGAGGATTATCTGCCTTGAAGCGTTGTCAATAATAATGGAAGTCATACTCCCGCACAACTATTTTGTTGTGTGATAATACAACCTATTGTTCTAATGAAACAATACTGATCTGCTGGTCATGCAGCAAATTTAAATATGGTTGTTAATGCAATTGTTATAGGTGCGGTCCAAACCTTTTCTTAATGGAAATCTAAGAAATAGCGTAAATACTTCAGACCATTCATGGTAGACCACATGATCACTCACTTATTACTTGACATGTGATGGAGCTTCAGGTGGTGGATTACTGGTCTCCTTGTAAAAAGTCCTATTCATCAAGAAATTGTTTCTGTTGGAGATGATGTGTTCTGATATGACTTTATATCCCTCGACTATAGAGCTAATGTTTGTGGCTGAGTAATTTCTGTGAGCAGGCTACAAGCTTCAATCTTAATATAAATAAAAATTACATTATCTCTACAAGCAATCTTTTGTCGTTGTGAATGCCTATGGACATATTTCCAGTGCTGAGAACTTGCACATCTACTAATTTGTCTTCATGGTCCATATATACTTCGTCGAGAAACACTCACCGTGTTTCTTTTCTCTGCCTGAACTATTGATTTAGTTGGGGTAGTTGCATTACCAGCTTTATGTTAAGCGTCAGTGATCATGGAGAATTGGTGCTCTTACAAATAGATTTATTGCTGAAAAACCTCCATTTTGTAGAGGATGAATATGACAAAGTTGCACTGAATTTGTTTGTCAGGTCGTCAACTATGTTAT</genome_strand>
        <mrna_strand>GCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAG....................................................................................................................GATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAG.........................................................................................................................................................................GTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATG.....................................................................GTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAA.............................................................................................................................................................................................................................................ATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCCAGGGAAAGCTGAGTGCGCCTCGCATATTAAGAATTCACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCAACTATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739067" ref_strand="+" ref_description="SGN-E739067 [LC16AA10]">
      <seq>gctcattcttggctggaaacttgtccttttcccgggcaagggtttctctagaaggatctacacctgttcctgtttataaagaaccatctcttagcattcctggaactccaggaatagtgcagcatgagattttgaacaacagaagacatgtcctgactaaggatactgctggaacagtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaggtttcatttgagaagaagaaagaagaactttttgagatggtgagcatccctgcatggttcactgtggacactaagcttggaaacttgtctgtacatctggatacaccacaatgcttttctgctgagatgtactctgctgatctccacattccagggaagcctgaagatgacaaggttaatttggcacgagaaacccttaaagggctgttggctcattggttagccaaaagaaaacagagatttggatctcaagctttggccaatggggaagccccagctggaaaggatgtacctacaaggaatctgaccgcgtcaaaaattgaagtggacggtagtgctgacaatgatgctgcagtatatcctccctttgaattttcagcagcatgccctccatcaattattactgagggttctcaaagtggtccatggaggaaaaagattaccgacttagatggaacagaagatgaaaaggacatgccatggtgggtagtggattgtgtgatgaacaatcggttgcctcccagggaaaataccaaatgtagcttctacttacatccatgcgagggttctactgttcagatccttacccagggaaagctgagtgcgcctcgcatattaagaattcacaaagtcgtcaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="15781" stop="19607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16081" g_stop="16145" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16146" i_stop="17253" i_length="1108">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17254" g_stop="17349" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="161" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17466" g_stop="17531" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="227" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17701" g_stop="17739" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="266" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17740" i_stop="17808" i_length="69">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17809" g_stop="17943" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="401" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17944" i_stop="18612" i_length="669">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18613" g_stop="18974" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="763" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18975" i_stop="19211" i_length="237">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19212" g_stop="19305" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="857" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E739067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16081" e_stop="16145"/>
          <exon e_start="17254" e_stop="17349"/>
          <exon e_start="17466" e_stop="17531"/>
          <exon e_start="17701" e_stop="17739"/>
          <exon e_start="17809" e_stop="17943"/>
          <exon e_start="18613" e_stop="18974"/>
          <exon e_start="19212" e_stop="19305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCTGTGAGTTTCAACCCCTTTATATCTTTTTTTTCCAAAGCCCCTCCCTAGGATCTCTGACCCGTTTTGCTCTCTTGGTGACTCGAACCCACAAACTTAGGGTTGAAGCTGAGGGGTCCTAACCATCTGAGCAACTCCCTGTCACCCCTTTATATCCTTTGTTGATGTTATCGCTAAGATTATTGGAACATATTTCTAATTGATGTATGGGGTTCCAAAATAGCTGCTATTTCTGGATTCCTCTTTAGAAAGGATGCATTTTAAAGATGAGCTGCTAATCAGAACTGGAAACTGGTTTTCTTTAACGAGTGAGCACATGAAGGATATTTCTCAATTTTGAGTTTTTATCAGTCTTTCTTGTCTCATGTGGAGTTCACTATGTTTCCAGATAAAATATGTACTCTTCTTATAATCTTTCTACTTCAAATTTTCCGGGTCTTGACTTAACCAACAGAGTAAGAAGAAAGTCTTATCAAATTCAAGTGGTTATTGATGTGCTAACGTAAGTTGCAATATGGAAGGCTCTGTTCGGGAACTTATTGAAGAGTAGTGAATTAGGACTTGTTATTTTTTTTGAGCTCTCCATGATCATATTCATCGTATTTTTGGTCAAAATCTTTTAATCCTTTATGTGGCCATATGATTGTACTTTATTCTTATTTGCTTTCAATTGCTTCTTTTGCGGACATCAGTAATGGGAAATATATTGAATCCTTAAGATTGTGTAATTTGGAATTGGAATTACTTTCTTTTCCTTTTTAGGATTACTTATAAGCACTATTTGAAGGACAATACAAAAAAAGATGTTTCGATTCAGATTCTCCTTCACATAGAAAGCATTTGCTGACTAGTTGTGTGCCCCTCTTTTGCAAGTTGTCTTGAGTTAGCCAAGCTTTTTTTGATAACTAGCCATGTGAAGCACATTACTTTCACTGGTATCCTAGAGTTCCAAACCTTCTTTAGTGACCTATAAGTTTTTTGGTGGGTATCTTTTACCAACATTGGAGTAATATGATATGAATCTATCTGCCCCTTCCATATTAAATTATATTCTCTTACTTCCACTTACATCTTTAAATATTAAAAAACTCACAATTGGTCAATAATGTAGGTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAGGTAAGTTTGTTTTGCATTTATACCCATGTGGCTTATGGCTTTATTGTTCTTAATGAGGTTAAACTGTCTTCTAAAAATATGATTTTGTAACCTGACAATGGCTTTTGTCTTTAAAGGATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAGGTTAGATTGTAATGTTTCAAGTGGCATGCTAAGTTACAATGGCCTGTTTTGAGCAAACTCTTTTGTTTAATTTTCTTTGAATTATGACAGCTGTCGCCTTCTACCTCTAAACGTTTTTTTTCATATTGTCTTTTTAACTTCTTTTCACCGTACTTTTGTCCAAATGTAGGTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATGGTAAATATCTTTGTAGAATTATCCAACTTCCACATATAATTTTTCTTCTGATATGATTTGCCTCTTCAGGTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAGGTATCTACAACGGTTTTTGTATCTTCTATTTTCTGCTTGGTTCCTAAATCTATTTTCATTTATTCCCGTTACTGCCTTCCTATTCTTGAAGTATAGTCTCTTGGCCGCTGTTTTTGTTAGTTTTTTTTTTCAAGATTGAAAGCCAGAAAAGATTGTTTTACCGGAACTAGTTCCGATGTTTTCTAGGGTTCCTATTAGTTTTGTTATCAAGTTGCATGTGATTGGGGGGGGGGGGGGGAGACAAATGTGAGAATTAGGGAATATATAGTTTCAGAGAATTCCTAATCTGTCTCCAGACAAATCATTTAGTATTTGAAGGAAATGGGTCCAAATGGAGCATATAGAAGATTTATAAAATTCAACCTAAATAGTTTTGGATAAGGCATAATACTTATTATTCTTGTAAGTAAGTACGTGGATGGTTTAGCAGAATGTATCTCAGTCCTCAGACATGACTTTTTTAGTTGTGATCTTTTAACTAGTTCTGGGAGTTGTACTATAGCAAATGGTGTGCATAAGACGCACTCAATTCCTGGAAATGGTTCTTCTTATTAATTAATTAATCAATTAAATTCTTTTAATAACTTCCTGATTTATCATTCATTTGATAAATTTTTGTATATTTCTGCGAGAGACGAACTGAAATTGTGATCGGCTTTTTGATGCTAGGTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAAGTAATATTCCAATATAACTGTATTCTACTTTCTTCATAGTGCTCAACTTGCATTTTGAACTTACAGAGCTGAGAGCACTTGTTTAGAACTAAAAGGAAGTCTTTCTGGAGGCACTTAACATTATCTCAACTCTCTGAGTTGCAGCAATGCTTACAAAACACTTTTTGATCTTCCATCTTTATGTGCAAAGTCACTTTTTCTTGACCATTTTCTCCCCTCATCTTAATGGATTTGCAGATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCCAGGGAAAGCTGAGTGCGCCTCGCATATTAAGAATTCACAAA</genome_strand>
        <mrna_strand>GCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAG....................................................................................................................GATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAG.........................................................................................................................................................................GTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATG.....................................................................GTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAA.............................................................................................................................................................................................................................................ATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCCAGGGAAAGCTGAGTGCGCCTCGCATATTAAGAATTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738223" ref_strand="+" ref_description="SGN-E738223 [LC12DC12]">
      <seq>cctctttcttggctggaaacttgtccttttcccgggcaagggtttctctagaaggatctacacctgttcctgtttataaagaaccatctcttagcattcctggaactccaggaatagtgcagcatgagattttgaacaacagaagacatgtcctgactaaggatactgctggaacagtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaggtttcatttgagaagaagaaagaagaactttttgagatggtgagcatccctgcatggttcactgtggacactaagcttggaaacttgtctgtacatctggatacaccacaatgcttttctgctgagatgtactctgctgatctccacattccagggaagcctgaagatgacaaggttaatttggcacgagaaacccttaaagggctgttggctcattggttagccaaaagaaaacagagatttggatctcaagctttggccaatggggaagccccagctggaaaggatgtacctacaaggaatctgaccgcgtcaaaaattgaagtggacggtagtgctgacaatgatgctgcagtatatcctccctttgaattttcagcagcatgccctccatcaattattactgagggttctcaaagtggtccatggaggaaaaagattaccgacttagatggaacagaagatgaaaaggacatgccatggtgggtagtggattgtgtgatgaacaatcggttgcctcccagggaaaataccaaatgtagcttctacttacatccatgcgagggttctactgttcagatccttaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="15782" stop="19564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16081" g_stop="16145" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16146" i_stop="17253" i_length="1108">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17254" g_stop="17349" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="161" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17466" g_stop="17531" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="227" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17701" g_stop="17739" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="266" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17740" i_stop="17808" i_length="69">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17809" g_stop="17943" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="401" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17944" i_stop="18612" i_length="669">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18613" g_stop="18974" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="763" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18975" i_stop="19211" i_length="237">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19212" g_stop="19264" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="816" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E738223" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16081" e_stop="16145"/>
          <exon e_start="17254" e_stop="17349"/>
          <exon e_start="17466" e_stop="17531"/>
          <exon e_start="17701" e_stop="17739"/>
          <exon e_start="17809" e_stop="17943"/>
          <exon e_start="18613" e_stop="18974"/>
          <exon e_start="19212" e_stop="19264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCTGTGAGTTTCAACCCCTTTATATCTTTTTTTTCCAAAGCCCCTCCCTAGGATCTCTGACCCGTTTTGCTCTCTTGGTGACTCGAACCCACAAACTTAGGGTTGAAGCTGAGGGGTCCTAACCATCTGAGCAACTCCCTGTCACCCCTTTATATCCTTTGTTGATGTTATCGCTAAGATTATTGGAACATATTTCTAATTGATGTATGGGGTTCCAAAATAGCTGCTATTTCTGGATTCCTCTTTAGAAAGGATGCATTTTAAAGATGAGCTGCTAATCAGAACTGGAAACTGGTTTTCTTTAACGAGTGAGCACATGAAGGATATTTCTCAATTTTGAGTTTTTATCAGTCTTTCTTGTCTCATGTGGAGTTCACTATGTTTCCAGATAAAATATGTACTCTTCTTATAATCTTTCTACTTCAAATTTTCCGGGTCTTGACTTAACCAACAGAGTAAGAAGAAAGTCTTATCAAATTCAAGTGGTTATTGATGTGCTAACGTAAGTTGCAATATGGAAGGCTCTGTTCGGGAACTTATTGAAGAGTAGTGAATTAGGACTTGTTATTTTTTTTGAGCTCTCCATGATCATATTCATCGTATTTTTGGTCAAAATCTTTTAATCCTTTATGTGGCCATATGATTGTACTTTATTCTTATTTGCTTTCAATTGCTTCTTTTGCGGACATCAGTAATGGGAAATATATTGAATCCTTAAGATTGTGTAATTTGGAATTGGAATTACTTTCTTTTCCTTTTTAGGATTACTTATAAGCACTATTTGAAGGACAATACAAAAAAAGATGTTTCGATTCAGATTCTCCTTCACATAGAAAGCATTTGCTGACTAGTTGTGTGCCCCTCTTTTGCAAGTTGTCTTGAGTTAGCCAAGCTTTTTTTGATAACTAGCCATGTGAAGCACATTACTTTCACTGGTATCCTAGAGTTCCAAACCTTCTTTAGTGACCTATAAGTTTTTTGGTGGGTATCTTTTACCAACATTGGAGTAATATGATATGAATCTATCTGCCCCTTCCATATTAAATTATATTCTCTTACTTCCACTTACATCTTTAAATATTAAAAAACTCACAATTGGTCAATAATGTAGGTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAGGTAAGTTTGTTTTGCATTTATACCCATGTGGCTTATGGCTTTATTGTTCTTAATGAGGTTAAACTGTCTTCTAAAAATATGATTTTGTAACCTGACAATGGCTTTTGTCTTTAAAGGATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAGGTTAGATTGTAATGTTTCAAGTGGCATGCTAAGTTACAATGGCCTGTTTTGAGCAAACTCTTTTGTTTAATTTTCTTTGAATTATGACAGCTGTCGCCTTCTACCTCTAAACGTTTTTTTTCATATTGTCTTTTTAACTTCTTTTCACCGTACTTTTGTCCAAATGTAGGTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATGGTAAATATCTTTGTAGAATTATCCAACTTCCACATATAATTTTTCTTCTGATATGATTTGCCTCTTCAGGTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAGGTATCTACAACGGTTTTTGTATCTTCTATTTTCTGCTTGGTTCCTAAATCTATTTTCATTTATTCCCGTTACTGCCTTCCTATTCTTGAAGTATAGTCTCTTGGCCGCTGTTTTTGTTAGTTTTTTTTTTCAAGATTGAAAGCCAGAAAAGATTGTTTTACCGGAACTAGTTCCGATGTTTTCTAGGGTTCCTATTAGTTTTGTTATCAAGTTGCATGTGATTGGGGGGGGGGGGGGGAGACAAATGTGAGAATTAGGGAATATATAGTTTCAGAGAATTCCTAATCTGTCTCCAGACAAATCATTTAGTATTTGAAGGAAATGGGTCCAAATGGAGCATATAGAAGATTTATAAAATTCAACCTAAATAGTTTTGGATAAGGCATAATACTTATTATTCTTGTAAGTAAGTACGTGGATGGTTTAGCAGAATGTATCTCAGTCCTCAGACATGACTTTTTTAGTTGTGATCTTTTAACTAGTTCTGGGAGTTGTACTATAGCAAATGGTGTGCATAAGACGCACTCAATTCCTGGAAATGGTTCTTCTTATTAATTAATTAATCAATTAAATTCTTTTAATAACTTCCTGATTTATCATTCATTTGATAAATTTTTGTATATTTCTGCGAGAGACGAACTGAAATTGTGATCGGCTTTTTGATGCTAGGTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAAGTAATATTCCAATATAACTGTATTCTACTTTCTTCATAGTGCTCAACTTGCATTTTGAACTTACAGAGCTGAGAGCACTTGTTTAGAACTAAAAGGAAGTCTTTCTGGAGGCACTTAACATTATCTCAACTCTCTGAGTTGCAGCAATGCTTACAAAACACTTTTTGATCTTCCATCTTTATGTGCAAAGTCACTTTTTCTTGACCATTTTCTCCCCTCATCTTAATGGATTTGCAGATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCC</genome_strand>
        <mrna_strand>CCTCTTTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAG....................................................................................................................GATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAG.........................................................................................................................................................................GTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATG.....................................................................GTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAA.............................................................................................................................................................................................................................................ATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737459" ref_strand="+" ref_description="SGN-E737459 [LC09DG02]">
      <seq>cttattcttggctggaaacttgtccttttcccagaaaagggtttctctaaaaagatctacacctgttcctgtttataagaaccatctcttagcattcctggaactccaggaatagtgcagcatgaaattttgaacaacagaagacatgtcctgactaaggatactgctggaacagtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaggtttcatttgagaagaagaaagaagaactttttgagatggtgagcatccctgcatggttcactgtggacactaagcttggaaacttgtctgtacatctggatacaccacaatgcttttctgctgagatgtactctgctgatctccacattccagggaagcctgaagatgacaaggttaatttggcacgagaaacccttaaagggctgttggctcattggttagccaaaagaaaacagagatttggatctcaagctttggccaatggggaagccccagctggaaaggatgtacctacaaggaatctgaccgcgtcaaaaattgaagtggacggtagtgctgacaatgatgctgcagtatatcctccctttgaattttcagcagcatgccctccatcaattattactgagggttctcaaagtggtccatggaggaaaaagattaccgacttagatggaacagaagatgaaaaggacatgccatggtgggtagtggattgtgtgatgaacaatcggttgcctcccagggaaaataacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="15782" stop="19276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16082" g_stop="16145" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16146" i_stop="17253" i_length="1108">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17254" g_stop="17349" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="159" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17466" g_stop="17531" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="225" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17701" g_stop="17739" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="264" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17740" i_stop="17808" i_length="69">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17809" g_stop="17943" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="399" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17944" i_stop="18612" i_length="669">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18613" g_stop="18974" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="761" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E737459" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16082" e_stop="16145"/>
          <exon e_start="17254" e_stop="17349"/>
          <exon e_start="17466" e_stop="17531"/>
          <exon e_start="17701" e_stop="17739"/>
          <exon e_start="17809" e_stop="17943"/>
          <exon e_start="18613" e_stop="18974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCTGTGAGTTTCAACCCCTTTATATCTTTTTTTTCCAAAGCCCCTCCCTAGGATCTCTGACCCGTTTTGCTCTCTTGGTGACTCGAACCCACAAACTTAGGGTTGAAGCTGAGGGGTCCTAACCATCTGAGCAACTCCCTGTCACCCCTTTATATCCTTTGTTGATGTTATCGCTAAGATTATTGGAACATATTTCTAATTGATGTATGGGGTTCCAAAATAGCTGCTATTTCTGGATTCCTCTTTAGAAAGGATGCATTTTAAAGATGAGCTGCTAATCAGAACTGGAAACTGGTTTTCTTTAACGAGTGAGCACATGAAGGATATTTCTCAATTTTGAGTTTTTATCAGTCTTTCTTGTCTCATGTGGAGTTCACTATGTTTCCAGATAAAATATGTACTCTTCTTATAATCTTTCTACTTCAAATTTTCCGGGTCTTGACTTAACCAACAGAGTAAGAAGAAAGTCTTATCAAATTCAAGTGGTTATTGATGTGCTAACGTAAGTTGCAATATGGAAGGCTCTGTTCGGGAACTTATTGAAGAGTAGTGAATTAGGACTTGTTATTTTTTTTGAGCTCTCCATGATCATATTCATCGTATTTTTGGTCAAAATCTTTTAATCCTTTATGTGGCCATATGATTGTACTTTATTCTTATTTGCTTTCAATTGCTTCTTTTGCGGACATCAGTAATGGGAAATATATTGAATCCTTAAGATTGTGTAATTTGGAATTGGAATTACTTTCTTTTCCTTTTTAGGATTACTTATAAGCACTATTTGAAGGACAATACAAAAAAAGATGTTTCGATTCAGATTCTCCTTCACATAGAAAGCATTTGCTGACTAGTTGTGTGCCCCTCTTTTGCAAGTTGTCTTGAGTTAGCCAAGCTTTTTTTGATAACTAGCCATGTGAAGCACATTACTTTCACTGGTATCCTAGAGTTCCAAACCTTCTTTAGTGACCTATAAGTTTTTTGGTGGGTATCTTTTACCAACATTGGAGTAATATGATATGAATCTATCTGCCCCTTCCATATTAAATTATATTCTCTTACTTCCACTTACATCTTTAAATATTAAAAAACTCACAATTGGTCAATAATGTAGGTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAGGTAAGTTTGTTTTGCATTTATACCCATGTGGCTTATGGCTTTATTGTTCTTAATGAGGTTAAACTGTCTTCTAAAAATATGATTTTGTAACCTGACAATGGCTTTTGTCTTTAAAGGATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAGGTTAGATTGTAATGTTTCAAGTGGCATGCTAAGTTACAATGGCCTGTTTTGAGCAAACTCTTTTGTTTAATTTTCTTTGAATTATGACAGCTGTCGCCTTCTACCTCTAAACGTTTTTTTTCATATTGTCTTTTTAACTTCTTTTCACCGTACTTTTGTCCAAATGTAGGTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATGGTAAATATCTTTGTAGAATTATCCAACTTCCACATATAATTTTTCTTCTGATATGATTTGCCTCTTCAGGTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAGGTATCTACAACGGTTTTTGTATCTTCTATTTTCTGCTTGGTTCCTAAATCTATTTTCATTTATTCCCGTTACTGCCTTCCTATTCTTGAAGTATAGTCTCTTGGCCGCTGTTTTTGTTAGTTTTTTTTTTCAAGATTGAAAGCCAGAAAAGATTGTTTTACCGGAACTAGTTCCGATGTTTTCTAGGGTTCCTATTAGTTTTGTTATCAAGTTGCATGTGATTGGGGGGGGGGGGGGGAGACAAATGTGAGAATTAGGGAATATATAGTTTCAGAGAATTCCTAATCTGTCTCCAGACAAATCATTTAGTATTTGAAGGAAATGGGTCCAAATGGAGCATATAGAAGATTTATAAAATTCAACCTAAATAGTTTTGGATAAGGCATAATACTTATTATTCTTGTAAGTAAGTACGTGGATGGTTTAGCAGAATGTATCTCAGTCCTCAGACATGACTTTTTTAGTTGTGATCTTTTAACTAGTTCTGGGAGTTGTACTATAGCAAATGGTGTGCATAAGACGCACTCAATTCCTGGAAATGGTTCTTCTTATTAATTAATTAATCAATTAAATTCTTTTAATAACTTCCTGATTTATCATTCATTTGATAAATTTTTGTATATTTCTGCGAGAGACGAACTGAAATTGTGATCGGCTTTTTGATGCTAGGTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAA</genome_strand>
        <mrna_strand>CTTATTCTTGGCTGGAAACTTGTCCTTTTCCCAGAAAAGGGTTTCTCTAAAAAGATCTACACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGTTTAT-AAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAAATTTTGAACAACAGAAGACATGTCCTGACTAAG....................................................................................................................GATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAG.........................................................................................................................................................................GTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATG.....................................................................GTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421376" ref_strand="+" ref_description="SGN-E421376 [STM-32-D16]">
      <seq>gtttataaagaaccatctcttagcattcctggaactccaggaatagtgcagcatgagattttgaacaacagaaaacatgtcctgactaaggatactgctggtacagtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaggtttcatttgagaagaagaaagaagaactttttgagatggtgagcatccctgcatggttcactgtggacactaggcttggaagcttggctgtacatctggatacgccacaatgcttttctgctgagatgtactctgctgatctccacattccagggaagcctgaagatgacaaggttaatttggcacgagaaacccttaaagggctgttggctcattggttagccaaaagaaaacagagatatggatctcaagctttagccaatggggaagccccagctggaaaggatgtacctacaaggaatctgaccgcgtcaaaaattgaagtggacggtagtgctgacaatgatgctgcagtatatcctccctttgaattttcagcagcatgccctccatcaattattactgagggttctcaaagtggtccatggaagaaaaagattaccgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="16960" stop="19187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17260" g_stop="17349" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17466" g_stop="17531" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="156" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17701" g_stop="17739" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="195" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17740" i_stop="17808" i_length="69">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17809" g_stop="17943" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="330" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17944" i_stop="18612" i_length="669">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18613" g_stop="18887" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="605" r_length="275" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E421376" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17260" e_stop="17349"/>
          <exon e_start="17466" e_stop="17531"/>
          <exon e_start="17701" e_stop="17739"/>
          <exon e_start="17809" e_stop="17943"/>
          <exon e_start="18613" e_stop="18887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAGGTAAGTTTGTTTTGCATTTATACCCATGTGGCTTATGGCTTTATTGTTCTTAATGAGGTTAAACTGTCTTCTAAAAATATGATTTTGTAACCTGACAATGGCTTTTGTCTTTAAAGGATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAGGTTAGATTGTAATGTTTCAAGTGGCATGCTAAGTTACAATGGCCTGTTTTGAGCAAACTCTTTTGTTTAATTTTCTTTGAATTATGACAGCTGTCGCCTTCTACCTCTAAACGTTTTTTTTCATATTGTCTTTTTAACTTCTTTTCACCGTACTTTTGTCCAAATGTAGGTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATGGTAAATATCTTTGTAGAATTATCCAACTTCCACATATAATTTTTCTTCTGATATGATTTGCCTCTTCAGGTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAGGTATCTACAACGGTTTTTGTATCTTCTATTTTCTGCTTGGTTCCTAAATCTATTTTCATTTATTCCCGTTACTGCCTTCCTATTCTTGAAGTATAGTCTCTTGGCCGCTGTTTTTGTTAGTTTTTTTTTTCAAGATTGAAAGCCAGAAAAGATTGTTTTACCGGAACTAGTTCCGATGTTTTCTAGGGTTCCTATTAGTTTTGTTATCAAGTTGCATGTGATTGGGGGGGGGGGGGGGAGACAAATGTGAGAATTAGGGAATATATAGTTTCAGAGAATTCCTAATCTGTCTCCAGACAAATCATTTAGTATTTGAAGGAAATGGGTCCAAATGGAGCATATAGAAGATTTATAAAATTCAACCTAAATAGTTTTGGATAAGGCATAATACTTATTATTCTTGTAAGTAAGTACGTGGATGGTTTAGCAGAATGTATCTCAGTCCTCAGACATGACTTTTTTAGTTGTGATCTTTTAACTAGTTCTGGGAGTTGTACTATAGCAAATGGTGTGCATAAGACGCACTCAATTCCTGGAAATGGTTCTTCTTATTAATTAATTAATCAATTAAATTCTTTTAATAACTTCCTGATTTATCATTCATTTGATAAATTTTTGTATATTTCTGCGAGAGACGAACTGAAATTGTGATCGGCTTTTTGATGCTAGGTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTT</genome_strand>
        <mrna_strand>GTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAAACATGTCCTGACTAAG....................................................................................................................GATACTGCTGGTACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAG.........................................................................................................................................................................GTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATG.....................................................................GTGAGCATCCCTGCATGGTTCACTGTGGACACTAGGCTTGGAAGCTTGGCTGTACATCTGGATACGCCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATATGGATCTCAAGCTTTAGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAAGAAAAAGATTACCGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366858" ref_strand="+" ref_description="SGN-E366858 [cLPT-6-H17]">
      <seq>tcctgactaaggatactgctggtacagtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaggtttcatttgagaagaagaaagaagaactttttgagatggtgagcatccctgcatggttcactgtggacactaagcttggaaacttgtctgtacatctggatacaccacaatgcttttctgctgagatgtactctgctgatctccacattccagggaagcctgaagatgacaaggttaatttggcacgagaaacccttaaagggctgttggctcattggttagcaaaaagaaaacagagatttggatctcaagcttttgccaatggggaagccccagctggaaaggatgtacctacaaggaatctgaccgcgtcaaaaattgaagtggacggtagtgctgacaatgatgctgcagtatatcctccctttgaattttcagcagcatgccctccatcaattattactgagggttctcaaagtggtccatggaggaaaaagattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="17163" stop="19181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17339" g_stop="17349" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17466" g_stop="17531" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="77" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17701" g_stop="17739" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="116" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17740" i_stop="17808" i_length="69">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17809" g_stop="17943" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="251" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17944" i_stop="18612" i_length="669">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18613" g_stop="18881" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="520" r_length="269" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E366858" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17339" e_stop="17349"/>
          <exon e_start="17466" e_stop="17531"/>
          <exon e_start="17701" e_stop="17739"/>
          <exon e_start="17809" e_stop="17943"/>
          <exon e_start="18613" e_stop="18881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGACTAAGGTAAGTTTGTTTTGCATTTATACCCATGTGGCTTATGGCTTTATTGTTCTTAATGAGGTTAAACTGTCTTCTAAAAATATGATTTTGTAACCTGACAATGGCTTTTGTCTTTAAAGGATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAGGTTAGATTGTAATGTTTCAAGTGGCATGCTAAGTTACAATGGCCTGTTTTGAGCAAACTCTTTTGTTTAATTTTCTTTGAATTATGACAGCTGTCGCCTTCTACCTCTAAACGTTTTTTTTCATATTGTCTTTTTAACTTCTTTTCACCGTACTTTTGTCCAAATGTAGGTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATGGTAAATATCTTTGTAGAATTATCCAACTTCCACATATAATTTTTCTTCTGATATGATTTGCCTCTTCAGGTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAGGTATCTACAACGGTTTTTGTATCTTCTATTTTCTGCTTGGTTCCTAAATCTATTTTCATTTATTCCCGTTACTGCCTTCCTATTCTTGAAGTATAGTCTCTTGGCCGCTGTTTTTGTTAGTTTTTTTTTTCAAGATTGAAAGCCAGAAAAGATTGTTTTACCGGAACTAGTTCCGATGTTTTCTAGGGTTCCTATTAGTTTTGTTATCAAGTTGCATGTGATTGGGGGGGGGGGGGGGAGACAAATGTGAGAATTAGGGAATATATAGTTTCAGAGAATTCCTAATCTGTCTCCAGACAAATCATTTAGTATTTGAAGGAAATGGGTCCAAATGGAGCATATAGAAGATTTATAAAATTCAACCTAAATAGTTTTGGATAAGGCATAATACTTATTATTCTTGTAAGTAAGTACGTGGATGGTTTAGCAGAATGTATCTCAGTCCTCAGACATGACTTTTTTAGTTGTGATCTTTTAACTAGTTCTGGGAGTTGTACTATAGCAAATGGTGTGCATAAGACGCACTCAATTCCTGGAAATGGTTCTTCTTATTAATTAATTAATCAATTAAATTCTTTTAATAACTTCCTGATTTATCATTCATTTGATAAATTTTTGTATATTTCTGCGAGAGACGAACTGAAATTGTGATCGGCTTTTTGATGCTAGGTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTAC</genome_strand>
        <mrna_strand>TCCTGACTAAG....................................................................................................................GATACTGCTGGTACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAG.........................................................................................................................................................................GTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATG.....................................................................GTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCAAAAAGAAAACAGAGATTTGGATCTCAAGCTTTTGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707139" ref_strand="+" ref_description="SGN-E707139 [FA32AF11]">
      <seq>cgatatgacaaggttaatttggcacgagaaacccttaaagggctgttggctcattggttagccaaaagaaaacagagatttggatctcaagctttggccaatggggaagccccagctggaaaggatgtacctacaaggaatctgaccgcgtcaaaaattgaagtggacggtagtgctgacaatgatgctgcagtatatcctccctttgaattttcagcagcatgccctccatcaattattactgagggttctcaaagtggtccatggaggaaaaagattaccgacttagatggaacagaagatgaaaaggacatgccatggtgggtagtggattgtgtgatgaacaatcggttgcctcccagggaaaataccaaatgtagcttctacttacatccatgcgagggttctactgttcagatccttacccagggaaagctgagtgcgcctcgcatattaagaattcacaaagtcgtcaactatgttatagaaaagatggttcttgataagccactggatagcctaaactcagatggagctgctggagtgtctggtggacaggtgacacacccagctaatggaggagatggcatatttcggactgggctgaagccttggcaaaagcttaaaccatccatagagatattgtgcagtaaccaggtcttatcccctgatatgagcttagcgactgtccgtgcatatatatggaagaaacctgaagaccttatcctcaactaccgggtgttgacgagcaagggataggattctgtctgtcaggtccagagtagctggaggtgattgagctgctcctcaaaaataattggaaggtttagcattcaactggctgcttgctgctgtgtcatatgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="18306" stop="22333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18613" g_stop="18974" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="374" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18975" i_stop="19211" i_length="237">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19212" g_stop="19305" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="468" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19306" i_stop="20459" i_length="1154">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20460" g_stop="20648" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="657" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20649" i_stop="20890" i_length="242">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20891" g_stop="21007" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="774" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21008" i_stop="21940" i_length="933">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.380" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21941" g_stop="22033" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="867" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E707139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18613" e_stop="18974"/>
          <exon e_start="19212" e_stop="19305"/>
          <exon e_start="20460" e_stop="20648"/>
          <exon e_start="20891" e_stop="21007"/>
          <exon e_start="21941" e_stop="22033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAAGTAATATTCCAATATAACTGTATTCTACTTTCTTCATAGTGCTCAACTTGCATTTTGAACTTACAGAGCTGAGAGCACTTGTTTAGAACTAAAAGGAAGTCTTTCTGGAGGCACTTAACATTATCTCAACTCTCTGAGTTGCAGCAATGCTTACAAAACACTTTTTGATCTTCCATCTTTATGTGCAAAGTCACTTTTTCTTGACCATTTTCTCCCCTCATCTTAATGGATTTGCAGATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCCAGGGAAAGCTGAGTGCGCCTCGCATATTAAGAATTCACAAAGTAAGTATCTTTTCCTTGAATCTCGTGGTGGAGTCAGTATTGTGGTGATTTACATTGGCCTTTGTTGGTTTACTAAGTCATTTGTTGTATGCATATTACCAGGATACTTGAAGTTTTAAACGATTCTGTTTTCCTGACCCATTATGACTTGTGTCTCATGCATTTAAATAGTAAAGAAACTCAAAGATATGACAATAACATACCCAGTGAAATCCTACAAGTGGGATCTAGGGAGAGTAGAGCGCATGCAGTCCTTACCCTACTTCGTAGAGGTAGAGAGGCTGTTTCCGAAGGATCCTTGTCTCAATTGAAAGAAACTCAAAAGATATACTGGAGGAATATGCCAATGAACTATCTGAAGATTTGTATATGTTGGTAACACCTGTGTTCTTGAGAGAAAAATGGTGAGGATTATCTGCCTTGAAGCGTTGTCAATAATAATGGAAGTCATACTCCCGCACAACTATTTTGTTGTGTGATAATACAACCTATTGTTCTAATGAAACAATACTGATCTGCTGGTCATGCAGCAAATTTAAATATGGTTGTTAATGCAATTGTTATAGGTGCGGTCCAAACCTTTTCTTAATGGAAATCTAAGAAATAGCGTAAATACTTCAGACCATTCATGGTAGACCACATGATCACTCACTTATTACTTGACATGTGATGGAGCTTCAGGTGGTGGATTACTGGTCTCCTTGTAAAAAGTCCTATTCATCAAGAAATTGTTTCTGTTGGAGATGATGTGTTCTGATATGACTTTATATCCCTCGACTATAGAGCTAATGTTTGTGGCTGAGTAATTTCTGTGAGCAGGCTACAAGCTTCAATCTTAATATAAATAAAAATTACATTATCTCTACAAGCAATCTTTTGTCGTTGTGAATGCCTATGGACATATTTCCAGTGCTGAGAACTTGCACATCTACTAATTTGTCTTCATGGTCCATATATACTTCGTCGAGAAACACTCACCGTGTTTCTTTTCTCTGCCTGAACTATTGATTTAGTTGGGGTAGTTGCATTACCAGCTTTATGTTAAGCGTCAGTGATCATGGAGAATTGGTGCTCTTACAAATAGATTTATTGCTGAAAAACCTCCATTTTGTAGAGGATGAATATGACAAAGTTGCACTGAATTTGTTTGTCAGGTCGTCAACTATGTTATAGAAAAGATGGTTCTTGATAAGCCACTGGATAGCCTAAACTCAGATGGAGCTGCTGGAGTGTCTGGTGGACAGGTGACACACCCAGCTAATGGAGGAGATGGCATATTTCGGACTGGGCTGAAGCCTTGGCAAAAGCTTAAACCATCCATAGAGATATTGTGCAGTAACCAGGCAAGTTTAGATTTCCGTTTGTGTTGTGTGGATTGCATAGCTGGTTAGTCTTTAATTTCAAGCACTGCGTTTTTTCATCCCATTTCTTCGTGATGTATGGAAGTATTGATGTCAAATTTTAGCATTAGAACTTCACACAATCTGTGTATGTTAGAGGATGTGGCTAGATAATTGGTCGATTTTAATATGTAGGTTCTTACTCTAGTTCCTGGTTAGTGAACTCATTTTTGTACTTTTACCAGGTCTTATCCCCTGATATGAGCTTAGCGACTGTCCGTGCATATATATGGAAGAAACCTGAAGACCTTATCCTCAACTACCGGGTGTTGACGAGCAAGGGATAGGATTCTGTCTGTCAGGTACATTCATTATTCTTTAGGCATATTTTATGTTCTGTAATTGATATTCAGCTTTGTACTGTATCCACAACCCACCCCACACCACCACTCTTTGTACAGTTCAATTTTTCTTTTGGATGGAGATTTTCCATTGGGTTGGTTGTGATTTGTAGTTGGTTAGTCATTGAGTGACAGATTGTTGAAAAGCTGGCAGTTTTGGGGTGATGCAGATCAAATACTCATGCCATGTGATGATCAATTTTAGTCTTTTGCTTTATTTGGTTTAGTATGATTTGAGAGTTCTACTTGTGATTCCTGGTTACACATCCAAAAATCTGATAATATCACCTCCAGCTCTGCGTTTGTAACAAAACTCAGGAGCACTATTATATATATCTCAGAGATGCAATCATCTTTCCTACTCCTACCTACGCTTTGATTGACCTCCAGTTGGCTGACACACACTTGTCTGGTTTTGCTTTGATGGGTTGCTGCATTGACTAAAACATTGAGAATTTTCGTCTCTCCTTCCATTTCTGATTATTGACTATTTGATTACTTTTATAAGGTGCCATTGCCTCAATTTACATTAGAGAATCTTTCCTTTTTCCTGCCCCCTCAGCCCACCCTGTGCACGTGTAGTGTTCTTGCCGAAACCTAAAAAACTGGAGAAGTAGAACACTTTAGGTTTTGTTTGTCACTTGTTTTCACATATTGGGGTTGGTTGAAAATTAGGAAAAGTTGGTTTCTTCTGTAGTCAATTAACCAAGCAAATTGTTGTATGTAATGTAGTTTTGAGGTATATGTGCCTTATTATTCTTTTATCTAAGATGATGTATGAGTACATGTTTTCTGTAGATAAAAATAAACACATGTTCATTTTTGTTTGCATATAGAGGAAGGCATGGTTGAGCAATTCTTCTGTCCACTCCCCTTGCCCCTTCTTTCGTGTAGGTCCAGAGTAGCTGGAGGTGATTGAGCTGCTCCTCAAAAATAATTGGAAGGTTTAGCATTCAACTGGCTGCTTGCTGCTGTGTCATATGAGTA</genome_strand>
        <mrna_strand>GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAA.............................................................................................................................................................................................................................................ATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCCAGGGAAAGCTGAGTGCGCCTCGCATATTAAGAATTCACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCAACTATGTTATAGAAAAGATGGTTCTTGATAAGCCACTGGATAGCCTAAACTCAGATGGAGCTGCTGGAGTGTCTGGTGGACAGGTGACACACCCAGCTAATGGAGGAGATGGCATATTTCGGACTGGGCTGAAGCCTTGGCAAAAGCTTAAACCATCCATAGAGATATTGTGCAGTAACCAG..................................................................................................................................................................................................................................................GTCTTATCCCCTGATATGAGCTTAGCGACTGTCCGTGCATATATATGGAAGAAACCTGAAGACCTTATCCTCAACTACCGGGTGTTGACGAGCAAGGGATAGGATTCTGTCTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAGTAGCTGGAGGTGATTGAGCTGCTCCTCAAAAATAATTGGAAGGTTTAGCATTCAACTGGCTGCTTGCTGCTGTGTCATATGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687765" ref_strand="+" ref_description="SGN-E687765 [T3_tus_79_O16]">
      <seq>atcaattattactgagggttctcaaagtggtccatggaggaaaaagattaccgacttagatggaacagaagatgaaaaggacatgccatggtgggtagtggattgtgtgatgaacaatcggttgcctcccagggaaaataccaaatgtagcttctacttacatccatgcgagggttctactgttcagatccttacccagggaaagctgagtgcgcctcgcatattaagaattcacaaagtcgtcaactatgttatagaaaagatggttcttgataagccactggatagcctaaactcagatggagctgctggagtgtctggtggacaggtgacacacccagctaatggaggagatggcatatttcggactgggctgaagccttggcaaaagcttaaaccatccatagagatattgtgcagtaaccaggtcttatcccctgatatgagcttagcgactgtccgtgcatatatatggaagaaacctgaagaccttatcctcaactaccgggtgttgacgagcaagggataggattctgtctgtcaggtccagagtagctggaggtgattgagctgctcctcaaaaataattggaaggtttagcattcaactggctgcttgctgctgtgtcatatgagtagttgcttccttgtagatctgagatccaggtggttggattaattatgaaaatttacacatttggaccatttttctgtttgcacgtcggaaggtggtgattattgagttttggtttttggtgcttttagaagaaaatagaaagtttgcattttctaaagaaaaggatttttggttttgaggggacatgaggctgaatgtttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="18531" stop="22533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18831" g_stop="18974" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18975" i_stop="19211" i_length="237">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19212" g_stop="19305" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="238" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19306" i_stop="20459" i_length="1154">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20460" g_stop="20648" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="427" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20649" i_stop="20890" i_length="242">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20891" g_stop="21007" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="544" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21008" i_stop="21940" i_length="933">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.380" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21941" g_stop="22233" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="838" r_length="294" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E687765" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18831" e_stop="18974"/>
          <exon e_start="19212" e_stop="19305"/>
          <exon e_start="20460" e_stop="20648"/>
          <exon e_start="20891" e_stop="21007"/>
          <exon e_start="21941" e_stop="22233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAAGTAATATTCCAATATAACTGTATTCTACTTTCTTCATAGTGCTCAACTTGCATTTTGAACTTACAGAGCTGAGAGCACTTGTTTAGAACTAAAAGGAAGTCTTTCTGGAGGCACTTAACATTATCTCAACTCTCTGAGTTGCAGCAATGCTTACAAAACACTTTTTGATCTTCCATCTTTATGTGCAAAGTCACTTTTTCTTGACCATTTTCTCCCCTCATCTTAATGGATTTGCAGATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCCAGGGAAAGCTGAGTGCGCCTCGCATATTAAGAATTCACAAAGTAAGTATCTTTTCCTTGAATCTCGTGGTGGAGTCAGTATTGTGGTGATTTACATTGGCCTTTGTTGGTTTACTAAGTCATTTGTTGTATGCATATTACCAGGATACTTGAAGTTTTAAACGATTCTGTTTTCCTGACCCATTATGACTTGTGTCTCATGCATTTAAATAGTAAAGAAACTCAAAGATATGACAATAACATACCCAGTGAAATCCTACAAGTGGGATCTAGGGAGAGTAGAGCGCATGCAGTCCTTACCCTACTTCGTAGAGGTAGAGAGGCTGTTTCCGAAGGATCCTTGTCTCAATTGAAAGAAACTCAAAAGATATACTGGAGGAATATGCCAATGAACTATCTGAAGATTTGTATATGTTGGTAACACCTGTGTTCTTGAGAGAAAAATGGTGAGGATTATCTGCCTTGAAGCGTTGTCAATAATAATGGAAGTCATACTCCCGCACAACTATTTTGTTGTGTGATAATACAACCTATTGTTCTAATGAAACAATACTGATCTGCTGGTCATGCAGCAAATTTAAATATGGTTGTTAATGCAATTGTTATAGGTGCGGTCCAAACCTTTTCTTAATGGAAATCTAAGAAATAGCGTAAATACTTCAGACCATTCATGGTAGACCACATGATCACTCACTTATTACTTGACATGTGATGGAGCTTCAGGTGGTGGATTACTGGTCTCCTTGTAAAAAGTCCTATTCATCAAGAAATTGTTTCTGTTGGAGATGATGTGTTCTGATATGACTTTATATCCCTCGACTATAGAGCTAATGTTTGTGGCTGAGTAATTTCTGTGAGCAGGCTACAAGCTTCAATCTTAATATAAATAAAAATTACATTATCTCTACAAGCAATCTTTTGTCGTTGTGAATGCCTATGGACATATTTCCAGTGCTGAGAACTTGCACATCTACTAATTTGTCTTCATGGTCCATATATACTTCGTCGAGAAACACTCACCGTGTTTCTTTTCTCTGCCTGAACTATTGATTTAGTTGGGGTAGTTGCATTACCAGCTTTATGTTAAGCGTCAGTGATCATGGAGAATTGGTGCTCTTACAAATAGATTTATTGCTGAAAAACCTCCATTTTGTAGAGGATGAATATGACAAAGTTGCACTGAATTTGTTTGTCAGGTCGTCAACTATGTTATAGAAAAGATGGTTCTTGATAAGCCACTGGATAGCCTAAACTCAGATGGAGCTGCTGGAGTGTCTGGTGGACAGGTGACACACCCAGCTAATGGAGGAGATGGCATATTTCGGACTGGGCTGAAGCCTTGGCAAAAGCTTAAACCATCCATAGAGATATTGTGCAGTAACCAGGCAAGTTTAGATTTCCGTTTGTGTTGTGTGGATTGCATAGCTGGTTAGTCTTTAATTTCAAGCACTGCGTTTTTTCATCCCATTTCTTCGTGATGTATGGAAGTATTGATGTCAAATTTTAGCATTAGAACTTCACACAATCTGTGTATGTTAGAGGATGTGGCTAGATAATTGGTCGATTTTAATATGTAGGTTCTTACTCTAGTTCCTGGTTAGTGAACTCATTTTTGTACTTTTACCAGGTCTTATCCCCTGATATGAGCTTAGCGACTGTCCGTGCATATATATGGAAGAAACCTGAAGACCTTATCCTCAACTACCGGGTGTTGACGAGCAAGGGATAGGATTCTGTCTGTCAGGTACATTCATTATTCTTTAGGCATATTTTATGTTCTGTAATTGATATTCAGCTTTGTACTGTATCCACAACCCACCCCACACCACCACTCTTTGTACAGTTCAATTTTTCTTTTGGATGGAGATTTTCCATTGGGTTGGTTGTGATTTGTAGTTGGTTAGTCATTGAGTGACAGATTGTTGAAAAGCTGGCAGTTTTGGGGTGATGCAGATCAAATACTCATGCCATGTGATGATCAATTTTAGTCTTTTGCTTTATTTGGTTTAGTATGATTTGAGAGTTCTACTTGTGATTCCTGGTTACACATCCAAAAATCTGATAATATCACCTCCAGCTCTGCGTTTGTAACAAAACTCAGGAGCACTATTATATATATCTCAGAGATGCAATCATCTTTCCTACTCCTACCTACGCTTTGATTGACCTCCAGTTGGCTGACACACACTTGTCTGGTTTTGCTTTGATGGGTTGCTGCATTGACTAAAACATTGAGAATTTTCGTCTCTCCTTCCATTTCTGATTATTGACTATTTGATTACTTTTATAAGGTGCCATTGCCTCAATTTACATTAGAGAATCTTTCCTTTTTCCTGCCCCCTCAGCCCACCCTGTGCACGTGTAGTGTTCTTGCCGAAACCTAAAAAACTGGAGAAGTAGAACACTTTAGGTTTTGTTTGTCACTTGTTTTCACATATTGGGGTTGGTTGAAAATTAGGAAAAGTTGGTTTCTTCTGTAGTCAATTAACCAAGCAAATTGTTGTATGTAATGTAGTTTTGAGGTATATGTGCCTTATTATTCTTTTATCTAAGATGATGTATGAGTACATGTTTTCTGTAGATAAAAATAAACACATGTTCATTTTTGTTTGCATATAGAGGAAGGCATGGTTGAGCAATTCTTCTGTCCACTCCCCTTGCCCCTTCTTTCGTGTAGGTCCAGAGTAGCTGGAGGTGATTGAGCTGCTCCTCAAAAATAATTGGAAGGTTTAGCATTCAACTGGCTGCTTGCTGCTGTGTCATATGAGTAGTTGCTTCCTTGTAGATCTGAGATCCAGGTGGTTGGATTAATTATGAAAATTTACACATTTGGACCATTTTTCTGTTTGCACGTCGGAAGGTGGTGATTATTGAGTTTTGGTTTTTGGTGCATTTAGAAGAAAATAGAAAGTTTGCATTTTCTAAAG-AAAGGATTTTTGGTTTTGAGGGGACATGAGGCTGAATGTTTCA</genome_strand>
        <mrna_strand>ATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAA.............................................................................................................................................................................................................................................ATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCCAGGGAAAGCTGAGTGCGCCTCGCATATTAAGAATTCACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCAACTATGTTATAGAAAAGATGGTTCTTGATAAGCCACTGGATAGCCTAAACTCAGATGGAGCTGCTGGAGTGTCTGGTGGACAGGTGACACACCCAGCTAATGGAGGAGATGGCATATTTCGGACTGGGCTGAAGCCTTGGCAAAAGCTTAAACCATCCATAGAGATATTGTGCAGTAACCAG..................................................................................................................................................................................................................................................GTCTTATCCCCTGATATGAGCTTAGCGACTGTCCGTGCATATATATGGAAGAAACCTGAAGACCTTATCCTCAACTACCGGGTGTTGACGAGCAAGGGATAGGATTCTGTCTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAGTAGCTGGAGGTGATTGAGCTGCTCCTCAAAAATAATTGGAAGGTTTAGCATTCAACTGGCTGCTTGCTGCTGTGTCATATGAGTAGTTGCTTCCTTGTAGATCTGAGATCCAGGTGGTTGGATTAATTATGAAAATTTACACATTTGGACCATTTTTCTGTTTGCACGTCGGAAGGTGGTGATTATTGAGTTTTGGTTTTTGGTGCTTTTAGAAGAAAATAGAAAGTTTGCATTTTCTAAAGAAAAGGATTTTTGGTTTTGAGGGGACATGAGGCTGAATGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323944" ref_strand="+" ref_description="SGN-E323944 [cTOC-3-G6]">
      <seq>tcaattattactgagggttctcaaagtggtccatggaggaaaaagattaccgacttagatggaacagaagatgaaaaggacatgccatggtgggtagtggattgtgtgatgaacaatcggttgcctcccagggaaaataccaaatgtagcttctacttacatccatgcgagggttctactgttcagatccttacccagggaaagctgagtgcgcctcgcatattaagaattcacaaagtcgtcaactatgttatagaaaagatggttcttgataagccactggatagcctaaactcagatggagctgctggagtgtctggtggacaggtgacacacccagctaatggaggagatggcatatttcggactgggctgaagccttggcaaaagcttaaaccatccatagagatattgtgcagtaaccaggtcttatcccctgatatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="18532" stop="21211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18832" g_stop="18974" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18975" i_stop="19211" i_length="237">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19212" g_stop="19305" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="237" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19306" i_stop="20459" i_length="1154">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20460" g_stop="20648" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="426" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20649" i_stop="20890" i_length="242">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20891" g_stop="20911" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="447" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E323944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18832" e_stop="18974"/>
          <exon e_start="19212" e_stop="19305"/>
          <exon e_start="20460" e_stop="20648"/>
          <exon e_start="20891" e_stop="20911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAAGTAATATTCCAATATAACTGTATTCTACTTTCTTCATAGTGCTCAACTTGCATTTTGAACTTACAGAGCTGAGAGCACTTGTTTAGAACTAAAAGGAAGTCTTTCTGGAGGCACTTAACATTATCTCAACTCTCTGAGTTGCAGCAATGCTTACAAAACACTTTTTGATCTTCCATCTTTATGTGCAAAGTCACTTTTTCTTGACCATTTTCTCCCCTCATCTTAATGGATTTGCAGATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCCAGGGAAAGCTGAGTGCGCCTCGCATATTAAGAATTCACAAAGTAAGTATCTTTTCCTTGAATCTCGTGGTGGAGTCAGTATTGTGGTGATTTACATTGGCCTTTGTTGGTTTACTAAGTCATTTGTTGTATGCATATTACCAGGATACTTGAAGTTTTAAACGATTCTGTTTTCCTGACCCATTATGACTTGTGTCTCATGCATTTAAATAGTAAAGAAACTCAAAGATATGACAATAACATACCCAGTGAAATCCTACAAGTGGGATCTAGGGAGAGTAGAGCGCATGCAGTCCTTACCCTACTTCGTAGAGGTAGAGAGGCTGTTTCCGAAGGATCCTTGTCTCAATTGAAAGAAACTCAAAAGATATACTGGAGGAATATGCCAATGAACTATCTGAAGATTTGTATATGTTGGTAACACCTGTGTTCTTGAGAGAAAAATGGTGAGGATTATCTGCCTTGAAGCGTTGTCAATAATAATGGAAGTCATACTCCCGCACAACTATTTTGTTGTGTGATAATACAACCTATTGTTCTAATGAAACAATACTGATCTGCTGGTCATGCAGCAAATTTAAATATGGTTGTTAATGCAATTGTTATAGGTGCGGTCCAAACCTTTTCTTAATGGAAATCTAAGAAATAGCGTAAATACTTCAGACCATTCATGGTAGACCACATGATCACTCACTTATTACTTGACATGTGATGGAGCTTCAGGTGGTGGATTACTGGTCTCCTTGTAAAAAGTCCTATTCATCAAGAAATTGTTTCTGTTGGAGATGATGTGTTCTGATATGACTTTATATCCCTCGACTATAGAGCTAATGTTTGTGGCTGAGTAATTTCTGTGAGCAGGCTACAAGCTTCAATCTTAATATAAATAAAAATTACATTATCTCTACAAGCAATCTTTTGTCGTTGTGAATGCCTATGGACATATTTCCAGTGCTGAGAACTTGCACATCTACTAATTTGTCTTCATGGTCCATATATACTTCGTCGAGAAACACTCACCGTGTTTCTTTTCTCTGCCTGAACTATTGATTTAGTTGGGGTAGTTGCATTACCAGCTTTATGTTAAGCGTCAGTGATCATGGAGAATTGGTGCTCTTACAAATAGATTTATTGCTGAAAAACCTCCATTTTGTAGAGGATGAATATGACAAAGTTGCACTGAATTTGTTTGTCAGGTCGTCAACTATGTTATAGAAAAGATGGTTCTTGATAAGCCACTGGATAGCCTAAACTCAGATGGAGCTGCTGGAGTGTCTGGTGGACAGGTGACACACCCAGCTAATGGAGGAGATGGCATATTTCGGACTGGGCTGAAGCCTTGGCAAAAGCTTAAACCATCCATAGAGATATTGTGCAGTAACCAGGCAAGTTTAGATTTCCGTTTGTGTTGTGTGGATTGCATAGCTGGTTAGTCTTTAATTTCAAGCACTGCGTTTTTTCATCCCATTTCTTCGTGATGTATGGAAGTATTGATGTCAAATTTTAGCATTAGAACTTCACACAATCTGTGTATGTTAGAGGATGTGGCTAGATAATTGGTCGATTTTAATATGTAGGTTCTTACTCTAGTTCCTGGTTAGTGAACTCATTTTTGTACTTTTACCAGGTCTTATCCCCTGATATGAGC</genome_strand>
        <mrna_strand>TCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAA.............................................................................................................................................................................................................................................ATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCCAGGGAAAGCTGAGTGCGCCTCGCATATTAAGAATTCACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCAACTATGTTATAGAAAAGATGGTTCTTGATAAGCCACTGGATAGCCTAAACTCAGATGGAGCTGCTGGAGTGTCTGGTGGACAGGTGACACACCCAGCTAATGGAGGAGATGGCATATTTCGGACTGGGCTGAAGCCTTGGCAAAAGCTTAAACCATCCATAGAGATATTGTGCAGTAACCAG..................................................................................................................................................................................................................................................GTCTTATCCCCTGATATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421377" ref_strand="-" ref_description="SGN-E421377 [STM-32-D16]">
      <seq>gatggagctgctggaatgtctggtggacaggtgacacacccagctaatgagggagatggcatatttcggactgggctgaagccttggcaaaagcttaaaccatccatagaaatcctgtgctgtaaccaggttttatcccctgatatgagcttagcgactgtccgtgcgtatatatggaagaaacctgaagaccttgtcctcaactaccgggtgttgacgagcaagggataggattctatttgtcaggtccagagtagcttgaggtgattgagctgctcctcaaaaataattggaaggcttagcattcaaatggctgcttgctgctgtgtcatgagtaattgcttccttgtagatctgggatccaagtggttggattaattaggaaaatttacacatttggaccattttgctgtttgcacgtcgaaaggtggtgattatcaagttttggtttttggtgcatttagaagaaaatagaaagaaagtttgcatttgctaaagaaaggatttttggttttgaggggacatgagactgaatgtttcaagagaaagagctcgtgatgatgttgggagcctgtagatttatatataactctatatgcaaaggcaggggtttggatgtctcgaatatagtctttcaagaaccacactgttgggcaggtgaataatatctccagaacaaaaaattaccttttctggtcaaactaatttaaatgttaccttctttctggttaaaaaaagttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="20220" stop="22729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20520" g_stop="20648" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20649" i_stop="20890" i_length="242">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20891" g_stop="21007" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="246" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21008" i_stop="21940" i_length="933">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.380" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21941" g_stop="22439" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="742" r_length="496" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E421377" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421377" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20520" e_stop="20648"/>
          <exon e_start="20891" e_stop="21007"/>
          <exon e_start="21941" e_stop="22439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAGCTGCTGGAGTGTCTGGTGGACAGGTGACACACCCAGCTAATGGAGGAGATGGCATATTTCGGACTGGGCTGAAGCCTTGGCAAAAGCTTAAACCATCCATAGAGATATTGTGCAGTAACCAGGCAAGTTTAGATTTCCGTTTGTGTTGTGTGGATTGCATAGCTGGTTAGTCTTTAATTTCAAGCACTGCGTTTTTTCATCCCATTTCTTCGTGATGTATGGAAGTATTGATGTCAAATTTTAGCATTAGAACTTCACACAATCTGTGTATGTTAGAGGATGTGGCTAGATAATTGGTCGATTTTAATATGTAGGTTCTTACTCTAGTTCCTGGTTAGTGAACTCATTTTTGTACTTTTACCAGGTCTTATCCCCTGATATGAGCTTAGCGACTGTCCGTGCATATATATGGAAGAAACCTGAAGACCTTATCCTCAACTACCGGGTGTTGACGAGCAAGGGATAGGATTCTGTCTGTCAGGTACATTCATTATTCTTTAGGCATATTTTATGTTCTGTAATTGATATTCAGCTTTGTACTGTATCCACAACCCACCCCACACCACCACTCTTTGTACAGTTCAATTTTTCTTTTGGATGGAGATTTTCCATTGGGTTGGTTGTGATTTGTAGTTGGTTAGTCATTGAGTGACAGATTGTTGAAAAGCTGGCAGTTTTGGGGTGATGCAGATCAAATACTCATGCCATGTGATGATCAATTTTAGTCTTTTGCTTTATTTGGTTTAGTATGATTTGAGAGTTCTACTTGTGATTCCTGGTTACACATCCAAAAATCTGATAATATCACCTCCAGCTCTGCGTTTGTAACAAAACTCAGGAGCACTATTATATATATCTCAGAGATGCAATCATCTTTCCTACTCCTACCTACGCTTTGATTGACCTCCAGTTGGCTGACACACACTTGTCTGGTTTTGCTTTGATGGGTTGCTGCATTGACTAAAACATTGAGAATTTTCGTCTCTCCTTCCATTTCTGATTATTGACTATTTGATTACTTTTATAAGGTGCCATTGCCTCAATTTACATTAGAGAATCTTTCCTTTTTCCTGCCCCCTCAGCCCACCCTGTGCACGTGTAGTGTTCTTGCCGAAACCTAAAAAACTGGAGAAGTAGAACACTTTAGGTTTTGTTTGTCACTTGTTTTCACATATTGGGGTTGGTTGAAAATTAGGAAAAGTTGGTTTCTTCTGTAGTCAATTAACCAAGCAAATTGTTGTATGTAATGTAGTTTTGAGGTATATGTGCCTTATTATTCTTTTATCTAAGATGATGTATGAGTACATGTTTTCTGTAGATAAAAATAAACACATGTTCATTTTTGTTTGCATATAGAGGAAGGCATGGTTGAGCAATTCTTCTGTCCACTCCCCTTGCCCCTTCTTTCGTGTAGGTCCAGAGTAGCTGGAGGTGATTGAGCTGCTCCTCAAAAATAATTGGAAGGTTTAGCATTCAACTGGCTGCTTGCTGCTGTGTCATATGAGTAGTTGCTTCCTTGTAGATCTGAGATCCAGGTGGTTGGATTAATTATGAAAATTTACACATTTGGACCATTTTTCTGTTTGCACGTCGGAAGGTGGTGATTATTGAGTTTTGGTTTTTGGTGCATTTAGAAGAAAAT----AGAAAGTTTGCATTTTCTAAAGAAAGGATTTTTGGTTTTGAGGGGACATGAGGCTGAATGTTTCAAGAGAAAGAGCTCGTGATGATGTTGTCGGGAGCCTGTAGATTTATATATAACTCTATATGCAAAGGCAGGGGTTTGGATTTCTTG-ATATAGTCTTTCAAGAACCACACTGTTGGGCAGGTGAATAATATCTCCAGAACAAAAACTTACCTTTTCTGGTCAAAACTAATTTATATGTTTACTTTCTTTCTGGTATAATTTAATCTGT</genome_strand>
        <mrna_strand>GATGGAGCTGCTGGAATGTCTGGTGGACAGGTGACACACCCAGCTAATGAGGGAGATGGCATATTTCGGACTGGGCTGAAGCCTTGGCAAAAGCTTAAACCATCCATAGAAATCCTGTGCTGTAACCAG..................................................................................................................................................................................................................................................GTTTTATCCCCTGATATGAGCTTAGCGACTGTCCGTGCGTATATATGGAAGAAACCTGAAGACCTTGTCCTCAACTACCGGGTGTTGACGAGCAAGGGATAGGATTCTATTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAGTAGCTTGAGGTGATTGAGCTGCTCCTCAAAAATAATTGGAAGGCTTAGCATTCAAATGGCTGCTTGCTGCTGTGTC--ATGAGTAATTGCTTCCTTGTAGATCTGGGATCCAAGTGGTTGGATTAATTAGGAAAATTTACACATTTGGACCATTTTGCTGTTTGCACGTCGAAAGGTGGTGATTATCAAGTTTTGGTTTTTGGTGCATTTAGAAGAAAATAGAAAGAAAGTTTGCATTTGCTAAAGAAAGGATTTTTGGTTTTGAGGGGACATGAGACTGAATGTTTCAAGAGAAAGAGCTCGTGATGATG-T-T-GGGAGCCTGTAGATTTATATATAACTCTATATGCAAAGGCAGGGGTTTGGATGTCTCGAATATAGTCTTTCAAGAACCACACTGTTGGGCAGGTGAATAATATCTCCAGAACAAAAAATTACCTTTTCTGGTC-AAACTAATTTAAATG-TTACCTTCTTTCTGGT-TAAAAAAAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734016" ref_strand="+" ref_description="SGN-E734016 [LB11CC04]">
      <seq>ccggtcttatcccctgatatgagcttagcgactgtccgtgcatatatatggaagaaacctgaagaccttatcctcaactaccgggtgttgacgagcaagggataggattctgtctgtcaggtccagagtagctggaggtgattgagctgctcctcaaaaataattggaaggtttagcattcaactggctgcttgctgctgtgtcatatgagtagttgcttccttgtagatctgagatccaggtggttggattaattatgaaaatttacacatttggaccatttttctgtttgcacgtcggaaggtggtgattattgagttttggtttttggtgcatttagaagaaaatagaaagtttgcattttctaaagaaaggatttttggttttgaggggacatgaggctgaatgtttcaagagaaagagctcgtgatgatgttgtcgggagcctgtagatttatatataactctatatgcaaaggcaggggtttggatttcttgatatagtctttcaagaaccacactgttgggcaggtgaataatatctccagaacaaaaacttaccttttctggtcaaaactaatttatatgtttactttctttctggtataatttaatctgtaaatcttctttgttattagtgttcctcaattttagtggggaaagatttggtgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="20588" stop="22794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20888" g_stop="21007" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21008" i_stop="21940" i_length="933">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.380" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21941" g_stop="22495" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="675" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E734016" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20888" e_stop="21007"/>
          <exon e_start="21941" e_stop="22495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTCTTATCCCCTGATATGAGCTTAGCGACTGTCCGTGCATATATATGGAAGAAACCTGAAGACCTTATCCTCAACTACCGGGTGTTGACGAGCAAGGGATAGGATTCTGTCTGTCAGGTACATTCATTATTCTTTAGGCATATTTTATGTTCTGTAATTGATATTCAGCTTTGTACTGTATCCACAACCCACCCCACACCACCACTCTTTGTACAGTTCAATTTTTCTTTTGGATGGAGATTTTCCATTGGGTTGGTTGTGATTTGTAGTTGGTTAGTCATTGAGTGACAGATTGTTGAAAAGCTGGCAGTTTTGGGGTGATGCAGATCAAATACTCATGCCATGTGATGATCAATTTTAGTCTTTTGCTTTATTTGGTTTAGTATGATTTGAGAGTTCTACTTGTGATTCCTGGTTACACATCCAAAAATCTGATAATATCACCTCCAGCTCTGCGTTTGTAACAAAACTCAGGAGCACTATTATATATATCTCAGAGATGCAATCATCTTTCCTACTCCTACCTACGCTTTGATTGACCTCCAGTTGGCTGACACACACTTGTCTGGTTTTGCTTTGATGGGTTGCTGCATTGACTAAAACATTGAGAATTTTCGTCTCTCCTTCCATTTCTGATTATTGACTATTTGATTACTTTTATAAGGTGCCATTGCCTCAATTTACATTAGAGAATCTTTCCTTTTTCCTGCCCCCTCAGCCCACCCTGTGCACGTGTAGTGTTCTTGCCGAAACCTAAAAAACTGGAGAAGTAGAACACTTTAGGTTTTGTTTGTCACTTGTTTTCACATATTGGGGTTGGTTGAAAATTAGGAAAAGTTGGTTTCTTCTGTAGTCAATTAACCAAGCAAATTGTTGTATGTAATGTAGTTTTGAGGTATATGTGCCTTATTATTCTTTTATCTAAGATGATGTATGAGTACATGTTTTCTGTAGATAAAAATAAACACATGTTCATTTTTGTTTGCATATAGAGGAAGGCATGGTTGAGCAATTCTTCTGTCCACTCCCCTTGCCCCTTCTTTCGTGTAGGTCCAGAGTAGCTGGAGGTGATTGAGCTGCTCCTCAAAAATAATTGGAAGGTTTAGCATTCAACTGGCTGCTTGCTGCTGTGTCATATGAGTAGTTGCTTCCTTGTAGATCTGAGATCCAGGTGGTTGGATTAATTATGAAAATTTACACATTTGGACCATTTTTCTGTTTGCACGTCGGAAGGTGGTGATTATTGAGTTTTGGTTTTTGGTGCATTTAGAAGAAAATAGAAAGTTTGCATTTTCTAAAGAAAGGATTTTTGGTTTTGAGGGGACATGAGGCTGAATGTTTCAAGAGAAAGAGCTCGTGATGATGTTGTCGGGAGCCTGTAGATTTATATATAACTCTATATGCAAAGGCAGGGGTTTGGATTTCTTGATATAGTCTTTCAAGAACCACACTGTTGGGCAGGTGAATAATATCTCCAGAACAAAAACTTACCTTTTCTGGTCAAAACTAATTTATATGTTTACTTTCTTTCTGGTATAATTTAATCTGTAAATCTTCTTTGTTATTAGTGTTCCTCAATTTTAGTGGGGAAAGATTTGGTGATAG</genome_strand>
        <mrna_strand>CCGGTCTTATCCCCTGATATGAGCTTAGCGACTGTCCGTGCATATATATGGAAGAAACCTGAAGACCTTATCCTCAACTACCGGGTGTTGACGAGCAAGGGATAGGATTCTGTCTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAGTAGCTGGAGGTGATTGAGCTGCTCCTCAAAAATAATTGGAAGGTTTAGCATTCAACTGGCTGCTTGCTGCTGTGTCATATGAGTAGTTGCTTCCTTGTAGATCTGAGATCCAGGTGGTTGGATTAATTATGAAAATTTACACATTTGGACCATTTTTCTGTTTGCACGTCGGAAGGTGGTGATTATTGAGTTTTGGTTTTTGGTGCATTTAGAAGAAAATAGAAAGTTTGCATTTTCTAAAGAAAGGATTTTTGGTTTTGAGGGGACATGAGGCTGAATGTTTCAAGAGAAAGAGCTCGTGATGATGTTGTCGGGAGCCTGTAGATTTATATATAACTCTATATGCAAAGGCAGGGGTTTGGATTTCTTGATATAGTCTTTCAAGAACCACACTGTTGGGCAGGTGAATAATATCTCCAGAACAAAAACTTACCTTTTCTGGTCAAAACTAATTTATATGTTTACTTTCTTTCTGGTATAATTTAATCTGTAAATCTTCTTTGTTATTAGTGTTCCTCAATTTTAGTGGGGAAAGATTTGGTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597955" ref_strand="+" ref_description="SGN-E597955 [73621]">
      <seq>ctggctgcttgctgctgtgtcctgagtaattgcttccttgtagatctgggatccaagtggttggattaattaggaaaatttacacatttggaccattttgctgtttgcacgtcgaaaggtgttgattattgagttttggttttttggtgcatttagaagaaaatagaaagaaggtttgcattagctaaagaaaggatttttggttttgaggggacatgagactgaatgtttcaagagaaagagctcgtgatgatgtcgggagcctgtagatttatatataactctatatgcaaaggcaggggtttggatgtctcgatatagtctttcaagaaccacactgttgggcaggtgaataatatctccagaacaaaaaattaccttttctggtcaaactaatttatatgtttaccttctttctggtataatttaatctgtaaatcttctttgttattagtattcctcaagtttagtgagggaagatttggtgataggccatttataacgccaagcagattgttcttatatagttcttaccgactgtgcgatgatgttgctccgaatggtgaagttttgtgctcatgtatttggaactatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="21728" stop="22905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22004" g_stop="22605" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E597955" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22004" e_stop="22605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTGCTTGCTGCTGTGTCATATGAGTAGTTGCTTCCTTGTAGATCTGAGATCCAGGTGGTTGGATTAATTATGAAAATTTACACATTTGGACCATTTTTCTGTTTGCACGTCGGAAGGTGGTGATTATTGAGTTTTGG-TTTTTGGTGCATTTAGAAGAAAATAG--A-AA-GTTTGCATTTTCTAAAGAAAGGATTTTTGGTTTTGAGGGGACATGAGGCTGAATGTTTCAAGAGAAAGAGCTCGTGATGATGTTGTCGGGAGCCTGTAGATTTATATATAACTCTATATGCAAAGGCAGGGGTTTGGATTTCTTGATATAGTCTTTCAAGAACCACACTGTTGGGCAGGTGAATAATATCTCCAGAACAAAAACTTACCTTTTCTGGTCAAAACTAATTTATATGTTTACTTTCTTTCTGGTATAATTTAATCTGTAAATCTTCTTTGTTATTAGTGTTCCTCAATTTTAGTGGGGAAAGATTTGGTGATAGGCCATTTATAACGCCAAGCAGATTGTTATTATATAGTTCTTACCGACTGTGCGATGATGTTGTTGCTCCGAATGGTGAAGTTTTGTGCTCATGTATCTGGAACAACTACT</genome_strand>
        <mrna_strand>CTGGCTGCTTGCTGCTGTGTC--CTGAGTAATTGCTTCCTTGTAGATCTGGGATCCAAGTGGTTGGATTAATTAGGAAAATTTACACATTTGGACCATTTTGCTGTTTGCACGTCGAAAGGTGTTGATTATTGAGTTTTGGTTTTTTGGTGCATTTAGAAGAAAATAGAAAGAAGGTTTGCATTAGCTAAAGAAAGGATTTTTGGTTTTGAGGGGACATGAGACTGAATGTTTCAAGAGAAAGAGCTCGTGATGA---TGTCGGGAGCCTGTAGATTTATATATAACTCTATATGCAAAGGCAGGGGTTTGGATGTCTCGATATAGTCTTTCAAGAACCACACTGTTGGGCAGGTGAATAATATCTCCAGAACAAAAAATTACCTTTTCTGGTC-AAACTAATTTATATGTTTACCTTCTTTCTGGTATAATTTAATCTGTAAATCTTCTTTGTTATTAGTATTCCTCAAGTTTAGTGAGGGAAGATTTGGTGATAGGCCATTTATAACGCCAAGCAGATTGTTCTTATATAGTTCTTACCGACTGTGCGATGA---TGTTGCTCCGAATGGTGAAGTTTTGTGCTCATGTATTTGGAACTATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597987" ref_strand="+" ref_description="SGN-E597987 [73654]">
      <seq>ctggctgcttgctgctgtgtcctgagtaattgcttccttgtagatctgggatccaagtggttggattaattaggaaaatttacacatttggaccattttgctgtttgcacgtcgaaaggtgttgattattgagttttggttttttggtgcatttagaagaaaatagaaagaaggtttgcattagctaaagaaaggatttttggttttgaggggacatgagactgaatgtttcaagagaaagagctcgtgatgatgtcgggagcctgtagatttatatataactctatatgcaaaggcaggggtttggatgtctcgatatagtctttcaagaaccacactgttgggcaggtgaataatatctccagaacaaaaaattaccttttctggtcaaactaatttatatgtttaccttctttctggtataatttaatctgtaaatcttctttgttattagtattcctcaagtttagtgagggaagatttggtgataggccatttataacgccaagcagattgttcttatatagttcttaccgactgtgcgatgatgttgctccgaatggtgaagttttgtgctcatgtatttggaactatttcttttaagcattcaagttttgaatgaaacattctggagataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="21728" stop="22908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22004" g_stop="22587" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E597987" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22004" e_stop="22587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTGCTTGCTGCTGTGTCATATGAGTAGTTGCTTCCTTGTAGATCTGAGATCCAGGTGGTTGGATTAATTATGAAAATTTACACATTTGGACCATTTTTCTGTTTGCACGTCGGAAGGTGGTGATTATTGAGTTTTGG-TTTTTGGTGCATTTAGAAGAAAATAG--A-AA-GTTTGCATTTTCTAAAGAAAGGATTTTTGGTTTTGAGGGGACATGAGGCTGAATGTTTCAAGAGAAAGAGCTCGTGATGATGTTGTCGGGAGCCTGTAGATTTATATATAACTCTATATGCAAAGGCAGGGGTTTGGATTTCTTGATATAGTCTTTCAAGAACCACACTGTTGGGCAGGTGAATAATATCTCCAGAACAAAAACTTACCTTTTCTGGTCAAAACTAATTTATATGTTTACTTTCTTTCTGGTATAATTTAATCTGTAAATCTTCTTTGTTATTAGTGTTCCTCAATTTTAGTGGGGAAAGATTTGGTGATAGGCCATTTATAACGCCAAGCAGATTGTTATTATATAGTTCTTACCGACTGTGCGATGATGTTGTTGCTCCGAATGGTGAAGTTTTGTGCTCAT</genome_strand>
        <mrna_strand>CTGGCTGCTTGCTGCTGTGTC--CTGAGTAATTGCTTCCTTGTAGATCTGGGATCCAAGTGGTTGGATTAATTAGGAAAATTTACACATTTGGACCATTTTGCTGTTTGCACGTCGAAAGGTGTTGATTATTGAGTTTTGGTTTTTTGGTGCATTTAGAAGAAAATAGAAAGAAGGTTTGCATTAGCTAAAGAAAGGATTTTTGGTTTTGAGGGGACATGAGACTGAATGTTTCAAGAGAAAGAGCTCGTGATGA---TGTCGGGAGCCTGTAGATTTATATATAACTCTATATGCAAAGGCAGGGGTTTGGATGTCTCGATATAGTCTTTCAAGAACCACACTGTTGGGCAGGTGAATAATATCTCCAGAACAAAAAATTACCTTTTCTGGTC-AAACTAATTTATATGTTTACCTTCTTTCTGGTATAATTTAATCTGTAAATCTTCTTTGTTATTAGTATTCCTCAAGTTTAGTGAGGGAAGATTTGGTGATAGGCCATTTATAACGCCAAGCAGATTGTTCTTATATAGTTCTTACCGACTGTGCGATGA---TGTTGCTCCGAATGGTGAAGTTTTGTGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428102" ref_strand="+" ref_description="SGN-E428102 [STM-49-B4]">
      <seq>taaatggcctatcaccaaatcttccctcactacaattgaggaattttaatcacaaagaagatttacagattaaattataccagaaagaaggtaaacatataaattagtttgaccagaaaaggtaattttttgttctggagatattattcacctgcccaacagtgtggttcttgaaagactatattcgagacatccaaacccctgcctttgcatatagagttatatataaatctacaggctcccaacatcatcacgagctctttctcttgaaacattcagtctcatgtcccctcaaaaccaaaaatcctttctttagcaaatgcaaactttctttctattttcttctaaatgcaccaaaaaccaaaacttgataatcaccacctttcgacgtgcaaacagcaaaatggtccaaatggggaaattttcctaattaatccaaccacttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="22803" stop="21756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22503" g_stop="22056" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E428102" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22503" e_stop="22056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGGCCTATCACCAAATCTTTCCCCACTAAAATTGAGGAACACTAATAACAAAGAAGATTTACAGATTAAATTATACCAGAAAGAAAGTAAACATATAAATTAGTTTTGACCAGAAAAGGTAAGTTTTTGTTCTGGAGATATTATTCACCTGCCCAACAGTGTGGTTCTTGAAAGACTATA-TCAAGAAATCCAAACCCCTGCCTTTGCATATAGAGTTATATATAAATCTACAGGCTCCCGACAACATCATCACGAGCTCTTTCTCTTGAAACATTCAGCCTCATGTCCCCTCAAAACCAAAAATCCTTTCTTTAGAAAATGCAAA----CTTTCTATTTTCTTCTAAATGCACCAAAAACCAAAACTCAATAATCACCACCTTCCGACGTGCAAACAGAAAAATGGTCCAAATGTGTAAATTTTCATAATTAATCCAACCACCTGGAT</genome_strand>
        <mrna_strand>TAAATGGCCTATCACCAAATCTTCCCTCACTACAATTGAGGAATTTTAATCACAAAGAAGATTTACAGATTAAATTATACCAGAAAGAAGGTAAACATATAAATTAG-TTTGACCAGAAAAGGTAATTTTTTGTTCTGGAGATATTATTCACCTGCCCAACAGTGTGGTTCTTGAAAGACTATATTCGAGACATCCAAACCCCTGCCTTTGCATATAGAGTTATATATAAATCTACAGGCT-CC--CAACATCATCACGAGCTCTTTCTCTTGAAACATTCAGTCTCATGTCCCCTCAAAACCAAAAATCCTTTCTTTAGCAAATGCAAACTTTCTTTCTATTTTCTTCTAAATGCACCAAAAACCAAAACTTGATAATCACCACCTTTCGACGTGCAAACAGCAAAATGGTCCAAATGGGGAAATTTTCCTAATTAATCCAACCACTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205445" ref_strand="+" ref_description="SGN-E205445 [cLEC-28-F6]">
      <seq>gaacagttcgagcttttttgtggatttttgttttaacaaatgagatttacagatttaattctaccagaaagaaagtaaacatattaattacttttgaccataaaaggtaagtttttgttgtggagatattattcacctgcccaacaatgtggttcttgaaagactatatcaagaaatccaaacccctgcctttgcgtatagagttatatataaatttacaggctcccgacaacatgattacgagctctttctcttgaaacattcagcctcatgttccctcaaaaccaaaaatcctttctttagaaaatgcaaactttctattttcttctaaatgcaccaaaaaccaaaacttaataatgaccaccttccgacgtgcaaacagaaaaatggtccaaatgtgtaaattttcataattaatccaaccacctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="22754" stop="21757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22454" g_stop="22057" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="431" r_length="398" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E205445" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22454" e_stop="22057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAAGAAGATTTACAGATTAAATTATACCAGAAAGAAAGTAAACATATAAATTAGTTTTGACCAGAAAAGGTAAGTTTTTGTTCTGGAGATATTATTCACCTGCCCAACAGTGTGGTTCTTGAAAGACTATATCAAGAAATCCAAACCCCTGCCTTTGCATATAGAGTTATATATAAATCTACAGGCTCCCGACAACATCATCACGAGCTCTTTCTCTTGAAACATTCAGCCTCATGTCCCCTCAAAACCAAAAATCCTTTCTTTAGAAAATGCAAACTTTCTATTTTCTTCTAAATGCACCAAAAACCAAAACTCAATAATCACCACCTTCCGACGTGCAAACAGAAAAATGGTCCAAATGTGTAAATTTTCATAATTAATCCAACCACCTGGA</genome_strand>
        <mrna_strand>TAACAAATGAGATTTACAGATTTAATTCTACCAGAAAGAAAGTAAACATATTAATTACTTTTGACCATAAAAGGTAAGTTTTTGTTGTGGAGATATTATTCACCTGCCCAACAATGTGGTTCTTGAAAGACTATATCAAGAAATCCAAACCCCTGCCTTTGCGTATAGAGTTATATATAAATTTACAGGCTCCCGACAACATGATTACGAGCTCTTTCTCTTGAAACATTCAGCCTCATGTTCCCTCAAAACCAAAAATCCTTTCTTTAGAAAATGCAAACTTTCTATTTTCTTCTAAATGCACCAAAAACCAAAACTTAATAATGACCACCTTCCGACGTGCAAACAGAAAAATGGTCCAAATGTGTAAATTTTCATAATTAATCCAACCACCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611074" ref_strand="+" ref_description="SGN-E611074 [60820]">
      <seq>aaaatgcgacgctagatgagcaagaaaccacacaggtgttcgaaaagctacacaaattcgtcggaaacaatctgaagaacatagtcgaaaacccatctcacgaaggcaccgacaacactccaggccgttactgctttcgtctccagagaaacagagtttactacgtatcagaatctctggtcaagcgagcaacaaacgtaaagcgagataacttagtttcgctgggaacccagttagggaaattcaccaaaggaggtaagtttcacctcacagttcaatgcttgggtatcttagcagcacacgcgaaacacaaagtgtggctgaaacccacatctgagatgagttttctgtatggaaataatgtattgaaaggtggagttggaaggattactgagagtattagtgagcatgatggggtggttgtgttttcgatgtcggatgtgccgttgggatttggggttgcagcgaagagtactcaggattgccggaaaatggatccgaatggaattgtagtgcttcatcaagctgatattggagagtatttgaggatggaagatgatctctaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="22944" stop="24112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23244" g_stop="23813" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E611074" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23244" e_stop="23813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCGACCGCTAGATGAGCAAGAAACAACACAGGTGTTCGAAAAGCTACACAAATTCGTCGGAAACAATCTGAAGAACATAGTGGAAAACCCATCTCACGAAGGTACCGACAACACTCCCGGCCGTTACTGCTTTCGTCTCCAGAGAAACAGAGTTTACTACGTATCAGAATCTCTGGTCAAGCGAGCAACCAACGTAAAGCGAGATAACTTAGTTTCGCTGGGAACCCAGTTAGGGAAATTCACCAAGGGAGGTAAATTTCATCTCACGGTTCAATGCTTGGGTCTCTTAGCTGCACACGCGAAACACAAAGTGTGGCTGAAACCCACGTCTGAGATGAGTTTTCTTTATGGAAATAATGTATTGAAAGGTGGAGTTGGAAGGATTACAGAGAGTATTAGTGATCATGATGGTGTGGTTGTGTTTTCGATGTCGGATGTGCCATTGGGATTTGGGGTTGCAGCGAAGAGTACTCAGGATTGCCGGAAAATGGATCCGAATGGAATTGTAGTGCTTCATCAAGCTGATATTGGAGAGTATTTGAGGATGGAAGATGATCTTTAATTA</genome_strand>
        <mrna_strand>AAAATGCGA-CGCTAGATGAGCAAGAAACCACACAGGTGTTCGAAAAGCTACACAAATTCGTCGGAAACAATCTGAAGAACATAGTCGAAAACCCATCTCACGAAGGCACCGACAACACTCCAGGCCGTTACTGCTTTCGTCTCCAGAGAAACAGAGTTTACTACGTATCAGAATCTCTGGTCAAGCGAGCAACAAACGTAAAGCGAGATAACTTAGTTTCGCTGGGAACCCAGTTAGGGAAATTCACCAAAGGAGGTAAGTTTCACCTCACAGTTCAATGCTTGGGTATCTTAGCAGCACACGCGAAACACAAAGTGTGGCTGAAACCCACATCTGAGATGAGTTTTCTGTATGGAAATAATGTATTGAAAGGTGGAGTTGGAAGGATTACTGAGAGTATTAGTGAGCATGATGGGGTGGTTGTGTTTTCGATGTCGGATGTGCCGTTGGGATTTGGGGTTGCAGCGAAGAGTACTCAGGATTGCCGGAAAATGGATCCGAATGGAATTGTAGTGCTTCATCAAGCTGATATTGGAGAGTATTTGAGGATGGAAGATGATCTCTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571530" ref_strand="+" ref_description="SGN-E571530 [14339]">
      <seq>gctagatgagcaagaaaccacacaggtgttcgaaaagctacacaaattcgtcggaaacaatctgaagaacatagtggaaaacccatctcacgaaggcaccgacaacactccaggccgttactgctttcgtctccagagaaacagagtttactacgtatcagaatctttggtcaagcgagcaacaaacgtaaagcgagataacttagtttcgctgggaacccagttagggaaattcaccaaaggaggtaagtttcacctcacagttcaatgcttgggtatcttagcagcacacgcgaaacacaaagtgtggctgaaanccacatctgagatgagttttctgtatggaaataatgtattgaaaggtggagttggaaggattactgagagcattagtgagcatgatgggggtggttgtgttttcgatgtcggatgtgccgttgggatttggagttgcagcgaagagtactcaggattgccggaaaatggatccgaatggaattgtaatgcttcatcaaggctgatattggagagtatttgaggatggaagatgatctctaagttcaatttaatttttgggagaaaaggtaattgaaattttgactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="22955" stop="24115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23255" g_stop="23816" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E571530" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23255" e_stop="23816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGATGAGCAAGAAACAACACAGGTGTTCGAAAAGCTACACAAATTCGTCGGAAACAATCTGAAGAACATAGTGGAAAACCCATCTCACGAAGGTACCGACAACACTCCCGGCCGTTACTGCTTTCGTCTCCAGAGAAACAGAGTTTACTACGTATCAGAATCTCTGGTCAAGCGAGCAACCAACGTAAAGCGAGATAACTTAGTTTCGCTGGGAACCCAGTTAGGGAAATTCACCAAGGGAGGTAAATTTCATCTCACGGTTCAATGCTTGGGTCTCTTAGCTGCACACGCGAAACACAAAGTGTGGCTGAAACCCACGTCTGAGATGAGTTTTCTTTATGGAAATAATGTATTGAAAGGTGGAGTTGGAAGGATTACAGAGAGTATTAGTGATCATGAT-GGTGTGGTTGTGTTTTCGATGTCGGATGTGCCATTGGGATTTGGGGTTGCAGCGAAGAGTACTCAGGATTGCCGGAAAATGGATCCGAATGGAATTGTAGTGCTTCATCAA-GCTGATATTGGAGAGTATTTGAGGATGGAAGATGATCTTTAATTACTG</genome_strand>
        <mrna_strand>GCTAGATGAGCAAGAAACCACACAGGTGTTCGAAAAGCTACACAAATTCGTCGGAAACAATCTGAAGAACATAGTGGAAAACCCATCTCACGAAGGCACCGACAACACTCCAGGCCGTTACTGCTTTCGTCTCCAGAGAAACAGAGTTTACTACGTATCAGAATCTTTGGTCAAGCGAGCAACAAACGTAAAGCGAGATAACTTAGTTTCGCTGGGAACCCAGTTAGGGAAATTCACCAAAGGAGGTAAGTTTCACCTCACAGTTCAATGCTTGGGTATCTTAGCAGCACACGCGAAACACAAAGTGTGGCTGAAANCCACATCTGAGATGAGTTTTCTGTATGGAAATAATGTATTGAAAGGTGGAGTTGGAAGGATTACTGAGAGCATTAGTGAGCATGATGGGGGTGGTTGTGTTTTCGATGTCGGATGTGCCGTTGGGATTTGGAGTTGCAGCGAAGAGTACTCAGGATTGCCGGAAAATGGATCCGAATGGAATTGTAATGCTTCATCAAGGCTGATATTGGAGAGTATTTGAGGATGGAAGATGATCTCTAAGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616989" ref_strand="+" ref_description="SGN-E616989 [90462]">
      <seq>gctagatgagcaagaaaccacacaggtgttcgaaaagctacacaaattcgtcggaaacaatctgaaaaacatagtggaaaaaccatctcacgaaggcaccgacaacactccaggccgttactgctttcgtctccagagaaacagagtttactacgtatcagaatctttggtcaagcgagcaacaaacgtaaagcgagataacttagtttcgctgggaacccagttagggaaattcaccaaaggaggtaagtttcacctcacagttcaatgcttgggtatcttagcagcacacgcgaaacacaaagtgtggctgaaacccacatctgagatgagttttctgtatggaaataatgtattgaaaggtggagttggaaggattactgagagcattagtgagcatgatggggtggttgtgttttcgatgtcggatgtgccgttgggatttggagttgcagcgaagagtactcaggattgccggaaaatggatccgaatggaattgtagtgcttcatcaagctgataattggagagtatttgaagatggaagatgatctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="22955" stop="24109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23255" g_stop="23809" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E616989" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23255" e_stop="23809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGATGAGCAAGAAACAACACAGGTGTTCGAAAAGCTACACAAATTCGTCGGAAACAATCTGAAGAACATAGTGGAAAACCCATCTCACGAAGGTACCGACAACACTCCCGGCCGTTACTGCTTTCGTCTCCAGAGAAACAGAGTTTACTACGTATCAGAATCTCTGGTCAAGCGAGCAACCAACGTAAAGCGAGATAACTTAGTTTCGCTGGGAACCCAGTTAGGGAAATTCACCAAGGGAGGTAAATTTCATCTCACGGTTCAATGCTTGGGTCTCTTAGCTGCACACGCGAAACACAAAGTGTGGCTGAAACCCACGTCTGAGATGAGTTTTCTTTATGGAAATAATGTATTGAAAGGTGGAGTTGGAAGGATTACAGAGAGTATTAGTGATCATGATGGTGTGGTTGTGTTTTCGATGTCGGATGTGCCATTGGGATTTGGGGTTGCAGCGAAGAGTACTCAGGATTGCCGGAAAATGGATCCGAATGGAATTGTAGTGCTTCATCAAGCTGAT-ATTGGAGAGTATTTGAGGATGGAAGATGATCTTTA</genome_strand>
        <mrna_strand>GCTAGATGAGCAAGAAACCACACAGGTGTTCGAAAAGCTACACAAATTCGTCGGAAACAATCTGAAAAACATAGTGGAAAAACCATCTCACGAAGGCACCGACAACACTCCAGGCCGTTACTGCTTTCGTCTCCAGAGAAACAGAGTTTACTACGTATCAGAATCTTTGGTCAAGCGAGCAACAAACGTAAAGCGAGATAACTTAGTTTCGCTGGGAACCCAGTTAGGGAAATTCACCAAAGGAGGTAAGTTTCACCTCACAGTTCAATGCTTGGGTATCTTAGCAGCACACGCGAAACACAAAGTGTGGCTGAAACCCACATCTGAGATGAGTTTTCTGTATGGAAATAATGTATTGAAAGGTGGAGTTGGAAGGATTACTGAGAGCATTAGTGAGCATGATGGGGTGGTTGTGTTTTCGATGTCGGATGTGCCGTTGGGATTTGGAGTTGCAGCGAAGAGTACTCAGGATTGCCGGAAAATGGATCCGAATGGAATTGTAGTGCTTCATCAAGCTGATAATTGGAGAGTATTTGAAGATGGAAGATGATCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604436" ref_strand="+" ref_description="SGN-E604436 [74571]">
      <seq>gcaaattaggaatcatttctggtttctttcactttcaccaccaataactattgtttttgtctttccctttgatgggagtggtggaaaaagtgtgttaaaaatatgagatatttatatagctgctagctttcttgtgctgttttcataaacattacagtatttctacaaaagtttgaaactttgcatttgtggccatttgttgcaaatggcttctcttctgcataatttctgggcaacccctcgttttggtcttagtccagactataagcctcagtgtatagctcggttcgcgtgcgtagctagccaggactctacattttngtcttcagaatctgttatagttaatggtgtgtcctccattgaagaaaaggagaaaagtagcccaataattgatgtgaaaaatggtcatctggctccagctattacggagaagaacaaggaggatattcaaaacaagttggaaactctttgggatgatggatatggaactcaaactgttaaaggattatcttgagataggatcggagattgtcaagcctgatggaggtcctccgcgggggttaactcccatatcagctgggcccttccttttggaaaactctcctctccttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="25930" stop="27140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26228" g_stop="26840" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E604436" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26228" e_stop="26840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAGGAATTCGTTTCTGGTTTCTTTCACTTTCACTATCAATAACTATTGTTTTTGTCTTTCCCTTTGATGGGAGTGGTGGAAAAAGTGTCTTTAAAATATGAGATA-TT-TAT--CTGCTAGCTTTCTTGTGCTGTTTTCATAAAACATTACAGTATTTCTACAGAAGTTTGAAACTTTGCAGTTTGTGGCCATTTGTTGCAAACCATGGCTTCTCTTCTGCATAATTTCTGGGCAGTCCCTCGTTTTGGTCTTAGTCCGGACTATAAGCCTCACTGTATAGCTCGGTTCGCATGCTTAGCTAACAGGGACTCTACATTTTTGTCTTCAGATTCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCACAATAATTGATGTGAAAAATAGTCATCTGGCTCCAGCTATTAAGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTT-AAGGATTATCTTGAGATAGGATCAGAGATTATTAAGCCTGATGGAGGTCCTCCGCGGTGGTTTACTCCCATATCAGCT-GGCCC-TCC-TTTGGAAGACTCTCCTCTCCTCCTTT</genome_strand>
        <mrna_strand>GCAAATTAGGAA-TCATTTCTGGTTTCTTTCACTTTCACCACCAATAACTATTGTTTTTGTCTTTCCCTTTGATGGGAGTGGTGGAAAAAGTGTGTTAAAAATATGAGATATTTATATAGCTGCTAGCTTTCTTGTGCTGTTTTCAT-AAACATTACAGTATTTCTACAAAAGTTTGAAACTTTGCA-TTTGTGGCCATTTGTTGC-AA--ATGGCTTCTCTTCTGCATAATTTCTGGGCAACCCCTCGTTTTGGTCTTAGTCCAGACTATAAGCCTCAGTGTATAGCTCGGTTCGCGTGCGTAGCTAGCCAGGACTCTACATTTTNGTCTTCAGAATCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCCCAATAATTGATGTGAAAAATGGTCATCTGGCTCCAGCTATTACGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTTAAAGGATTATCTTGAGATAGGATCGGAGATTGTCAAGCCTGATGGAGGTCCTCCGCGGGGGTTAACTCCCATATCAGCTGGGCCCTTCCTTTTGGAAAACTCTCCTCTCCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330599" ref_strand="+" ref_description="SGN-E330599 [cTOD-8-D9]">
      <seq>aacattacagtatttctacagaagtttgaaactttgcagtttgtggccatttgttgcaaaccatggcttctcttctgcataatttctgggcagtccctcgttttggtcttagtccggactataagcctcactgtatagctcggttcgcatgcttagctaacagggactctacatttttgtcttcagattctgttatagttaatggtgtgtcctccattgaagaaaaggagaaaagtagcacaataattgatgtgaaaaatagtcatctggctccagctattaaggagaagaacaaggaggatattcaaaacaagttggaaactctttgggatgatggatatggaactcaaactgttaaggattatcttgagataggatcagagattattaagcctgatggaggtcctccgcggtggtttactcccatatcagctggccctcctttggaagactctcctctcctcctttttctgccaggaatggatggcactggcatgggtcttgttttgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="26073" stop="27431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26373" g_stop="26849" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26850" i_stop="27095" i_length="246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27096" g_stop="27131" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="513" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E330599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26373" e_stop="26849"/>
          <exon e_start="27096" e_stop="27131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTACAGTATTTCTACAGAAGTTTGAAACTTTGCAGTTTGTGGCCATTTGTTGCAAACCATGGCTTCTCTTCTGCATAATTTCTGGGCAGTCCCTCGTTTTGGTCTTAGTCCGGACTATAAGCCTCACTGTATAGCTCGGTTCGCATGCTTAGCTAACAGGGACTCTACATTTTTGTCTTCAGATTCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCACAATAATTGATGTGAAAAATAGTCATCTGGCTCCAGCTATTAAGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTTAAGGATTATCTTGAGATAGGATCAGAGATTATTAAGCCTGATGGAGGTCCTCCGCGGTGGTTTACTCCCATATCAGCTGGCCCTCCTTTGGAAGACTCTCCTCTCCTCCTTTTTCTGCCAGGTAATCTTCAAAATCAAAAGAAAAATAACACTATAACATGTTTTTATATTAGTTTAGTGGTACAGATAGGGGAATTGATATCAGTTTGGTAGTCCTAAAATTTGAGGAAAGATCAATCCAATGTAGCAGTACGTTTCAGCAAGGTCATGCATGCTGTTCCTAGGATACAATTTTTATTATTAAATGTGTGGAGGGTTTCTCTTAATATTTTTGGATGACTTACTAGAATGCAATTCCAATGTATAGGAATGGATGGCACTGGCATGGGTCTTGTTTTGCATG</genome_strand>
        <mrna_strand>AACATTACAGTATTTCTACAGAAGTTTGAAACTTTGCAGTTTGTGGCCATTTGTTGCAAACCATGGCTTCTCTTCTGCATAATTTCTGGGCAGTCCCTCGTTTTGGTCTTAGTCCGGACTATAAGCCTCACTGTATAGCTCGGTTCGCATGCTTAGCTAACAGGGACTCTACATTTTTGTCTTCAGATTCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCACAATAATTGATGTGAAAAATAGTCATCTGGCTCCAGCTATTAAGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTTAAGGATTATCTTGAGATAGGATCAGAGATTATTAAGCCTGATGGAGGTCCTCCGCGGTGGTTTACTCCCATATCAGCTGGCCCTCCTTTGGAAGACTCTCCTCTCCTCCTTTTTCTGCCAG......................................................................................................................................................................................................................................................GAATGGATGGCACTGGCATGGGTCTTGTTTTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259081" ref_strand="+" ref_description="SGN-E259081 [cLEG-41-O12]">
      <seq>ttcgcatgcttagctaacagggactctacatttttgtcttcagattctgttatagttaatggtgtgtcctccattgaagaaaaggagaaaagtagcacaataattgatgtgaaaaatagtcatctggctccagctattaaggagaagaacaaggaggatattcaaaacaagttggaaactctttgggatgatggatatggaactcaaactgttaaggattatcttgagataggatcagagattattaagcctgatggaggtcctccgcggtggtttactcccatatcagctggccctcctttggaagactctcctctcctcctttttctgccaggaatggatggcactggcatgggtcttgttttgcatgagaaggctcttgggaaagtttttcaggtttggtgcttgcatattcctgtgtatgatcgaacaccatttgatgaactggtgaaattcgtcgggagaactgtgaggatgaagcatgcttcatctccaaacaagccaatttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="26216" stop="29611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26516" g_stop="26849" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26850" i_stop="27095" i_length="246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27096" g_stop="27147" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="386" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27148" i_stop="28396" i_length="1249">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28397" g_stop="28452" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="442" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28453" i_stop="29241" i_length="789">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29242" g_stop="29311" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="512" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E259081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26516" e_stop="26849"/>
          <exon e_start="27096" e_stop="27147"/>
          <exon e_start="28397" e_stop="28452"/>
          <exon e_start="29242" e_stop="29311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCATGCTTAGCTAACAGGGACTCTACATTTTTGTCTTCAGATTCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCACAATAATTGATGTGAAAAATAGTCATCTGGCTCCAGCTATTAAGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTTAAGGATTATCTTGAGATAGGATCAGAGATTATTAAGCCTGATGGAGGTCCTCCGCGGTGGTTTACTCCCATATCAGCTGGCCCTCCTTTGGAAGACTCTCCTCTCCTCCTTTTTCTGCCAGGTAATCTTCAAAATCAAAAGAAAAATAACACTATAACATGTTTTTATATTAGTTTAGTGGTACAGATAGGGGAATTGATATCAGTTTGGTAGTCCTAAAATTTGAGGAAAGATCAATCCAATGTAGCAGTACGTTTCAGCAAGGTCATGCATGCTGTTCCTAGGATACAATTTTTATTATTAAATGTGTGGAGGGTTTCTCTTAATATTTTTGGATGACTTACTAGAATGCAATTCCAATGTATAGGAATGGATGGCACTGGCATGGGTCTTGTTTTGCATGAGAAGGCTCTTGGGAAGTAAGTCCAAGCACTCTTCTATAATGTGTAATAATACTTTTCTGGTTCTGGTATAATTCCTATTGATGCTTAGGTAGCAATCAGCTAGCTTCATGATTCCACTAGTATGAGATACTGTAACTTAAGCTGGCCTCGTCAAATTGTGCGCACGTAATAAATATGAGACCAATGCCAATACCTTTCTCGTTGTTTTGGCTAAGATCAAGTATTGTACAACATCAATCACAATTGCTTTAGGCCTAGATTATTTGTTCTCCACTTATCTTTTTGCACCTTAAATGTTGCAAAAGACATTTCACTTTCTTGTGTCAAAGCAGATATAAAAGATTATTGATTTAAATTTAGTGGTCTGTATCCTACAATGCAATCTTCTTATATTTAAAGCTGTCAGTTGAGTGTGGCTTTGAGGTAGTGAGCTCCATATGATTAAATAATCTTGGAACTTGATATCCAAGTGCTATGATTATTTAGTTGAAAAAATATTGCTCCTGTGCTTCGTAAAGATGTAGTGGCTTTATTAATGGCATCATAGACTTCTATTTATTTGCTTCATAAATTTCTGGTTATAACAGTTGATGTCTATGTACTGTAGCAAGTCAAATCGTACAGTTGATGACTATTTATTGTATTAAATCAAATCACCTTTACAATACTACTGTATCATGTAAAGAAGTTTATGCATAGGAGCGGGGGTAGCTGCTGCGGGTTTCCCTTGTCATCAAAAAAAAATTACCACTGTATCATGTAAAGAAAGTACGAAGTGGGAACACTTCGGTAGTTTATTATGTTTAGGACTTCAGTATGTGTTCTAATCCAAGCATGGAATGTAATTATATCTTCTGCTTGTCGTTTCTATCAAAGATTGGGCACACTGGAAGTAAAAGATTCGTATAAGTGATATCTATTACTAGGATATTAATTTTACTATTATATATATGTGTTTATATTTAACTTCTTATTCACTTTTAGTTTTATTTTGTATGATGACGACATGAGTTGAGGTTAAATGGAGATGTGAGGATTATATAGCCGCAATTGTTCGGGATCGAGGCATAGTAGTTATTATTGTTGTTGCTTGTTGTGCTTACCCTGACTATATATACTCGTGGTAGAAAAGTTTGTTAACATTTTGTAGGCTATGATGCTTAATTTCGTATAATAGGGCTCGCTACTTATGGTTAAACAGTTCACTGGCCTTTCCGTTAGCACTTCAGTTCAAATTCTTGACTGAAGAATTGCTTGTTTGCAGAGTTTTTCAGGTTTGGTGCTTGCATATTCCTGTGTATGATCGAACACCATTTGATGGTATAGTATTTCTTCCCTTTATTTAGTGCTTTGTGCAAATATTGGTTGGTCCAACGAAGAACCTGTCTATTGTGAATTTATATTTATACTTGCAATAAGTATCAATTTAGAAACATTACAATACTATCACAGAGCGAAAGAGGTTTCTGTTACAAAGATCCATTGGTGTTTTAATTTGCGAGCTTGAAAGAATGAATTTGGGCAACTACTTGAAGAAGACACACTGAGGTTGATGGAAAGAAATCAACATATAGGGCATTATTTGATATTCTGCATGTCTCTCCAATTATCTCACATCTCTCTCTTTTAACTGATCAAATTAAGAAGTAAATTCTACATGCTTAGGAAATAAAGATTACGGAGAGAAGAAATTGGCGCTTATACTTTCTTTGTTTTCTACTTCTTTCTTCTTTCAGTCTGTTATCTTTTGGGACTTTTTAGTGGGGCGGAAAGGACTTGGCACAAGTTGGAAGGTTCTTTGTAGTTGTCTTCGTATGGTTAACTGCCAGTCGAAGTGTTAAAAACACGAAAAAATGGTTAAAGGTCTAATTTTCCTGCTTCGGAGAGTGGGGATCGAGGAAAGCAAAATGGTGTTTTTGTGGGTTCAGGGACTTGGGAGTTTGGCTGTTACTGTTTCAAAGCTTGGAATTCAGTTGTGATGTCAGAATATTTACTTTGACATATGTTGATTTATCTGAATGTGTTTTGGTTATGGAGCATCTGCATGTGAGATTTATCACAGCTGGAAAAGAACAAAGTTTGGTTATAGTCTATTTTCTTAAATTATAGAACTGGTGAAATTCGTCGGGAGAACTGTGAGGATGAAGCATGCTTCATCTCCAAACAAGCCAATTTATTT</genome_strand>
        <mrna_strand>TTCGCATGCTTAGCTAACAGGGACTCTACATTTTTGTCTTCAGATTCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCACAATAATTGATGTGAAAAATAGTCATCTGGCTCCAGCTATTAAGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTTAAGGATTATCTTGAGATAGGATCAGAGATTATTAAGCCTGATGGAGGTCCTCCGCGGTGGTTTACTCCCATATCAGCTGGCCCTCCTTTGGAAGACTCTCCTCTCCTCCTTTTTCTGCCAG......................................................................................................................................................................................................................................................GAATGGATGGCACTGGCATGGGTCTTGTTTTGCATGAGAAGGCTCTTGGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTCAGGTTTGGTGCTTGCATATTCCTGTGTATGATCGAACACCATTTGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGTGAAATTCGTCGGGAGAACTGTGAGGATGAAGCATGCTTCATCTCCAAACAAGCCAATTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264586" ref_strand="+" ref_description="SGN-E264586 [cLEG-67-J6]">
      <seq>ttcgcatgcttagctaacagggactctacatttttgtcttcagattctgttatagttaatggtgtgtcctccattgaagaaaaggagaaaagtagcacaataattgatgtgaaaaatagtcatctggctccagctattaaggagaagaacaaggaggatattcaaaacaagttggaaactctttgggatgatggatatggaactcaaactgttaaggattatcttgagataggatcagagattattaagcctgatggaggtcctccgcggtggtttactcccatatcagctggccctcctttggaagactctcctctcctcctttttctgccaggaatggatggcactggcatgggtcttgttttgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="26216" stop="27432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26516" g_stop="26849" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26850" i_stop="27095" i_length="246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27096" g_stop="27132" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="371" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E264586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26516" e_stop="26849"/>
          <exon e_start="27096" e_stop="27132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCATGCTTAGCTAACAGGGACTCTACATTTTTGTCTTCAGATTCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCACAATAATTGATGTGAAAAATAGTCATCTGGCTCCAGCTATTAAGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTTAAGGATTATCTTGAGATAGGATCAGAGATTATTAAGCCTGATGGAGGTCCTCCGCGGTGGTTTACTCCCATATCAGCTGGCCCTCCTTTGGAAGACTCTCCTCTCCTCCTTTTTCTGCCAGGTAATCTTCAAAATCAAAAGAAAAATAACACTATAACATGTTTTTATATTAGTTTAGTGGTACAGATAGGGGAATTGATATCAGTTTGGTAGTCCTAAAATTTGAGGAAAGATCAATCCAATGTAGCAGTACGTTTCAGCAAGGTCATGCATGCTGTTCCTAGGATACAATTTTTATTATTAAATGTGTGGAGGGTTTCTCTTAATATTTTTGGATGACTTACTAGAATGCAATTCCAATGTATAGGAATGGATGGCACTGGCATGGGTCTTGTTTTGCATGA</genome_strand>
        <mrna_strand>TTCGCATGCTTAGCTAACAGGGACTCTACATTTTTGTCTTCAGATTCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCACAATAATTGATGTGAAAAATAGTCATCTGGCTCCAGCTATTAAGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTTAAGGATTATCTTGAGATAGGATCAGAGATTATTAAGCCTGATGGAGGTCCTCCGCGGTGGTTTACTCCCATATCAGCTGGCCCTCCTTTGGAAGACTCTCCTCTCCTCCTTTTTCTGCCAG......................................................................................................................................................................................................................................................GAATGGATGGCACTGGCATGGGTCTTGTTTTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594301" ref_strand="+" ref_description="SGN-E594301 [37549]">
      <seq>cgaaggaaactcttctctggaagttgaagcttcttagatctgcttcatcttattcaaattcccgtctccatgctgttaatgctgaagtacttgtgattgctagtggcaaggataacatgcttccaagtgagaatgaagctcagaggcttaaaaattcattaagaaactgcacagtacgatacttcaaagacaacgggcatactattttattggaagatggtattaatctgctatccatcatcaaagctactggcaaatatcgtcgttcaaaaaggcatgattatgtcatggattttctgcctcctagtaagtcagagttcaagaaaacaaccaaggacaatagttggtatttcaattttactggaccagttatgctgtccacgatggaaaatgggaaaattgtcagaggtctagcgggggtcccacgtgaaggccctgtattgttggtcggttatcacatgcttatgggtttagaaattgtccctcttgttcatgaatatttgatgcagacgaaaattttacttcgtggaatagcacatccagcgttgtttactcagctggtcgagagtcgacctaatgcaanctcattcatttgatatgctgaaactatatggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="34276" stop="38029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34576" g_stop="34678" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34679" i_stop="35401" i_length="723">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35402" g_stop="35510" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="212" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35511" i_stop="36793" i_length="1283">
            <donor d_prob="0.673" d_score="1.00"/>
            <acceptor a_prob="0.701" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36794" g_stop="36924" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="343" r_length="131" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36925" i_stop="37455" i_length="531">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.806" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37456" g_stop="37729" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="618" r_length="275" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E594301" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34576" e_stop="34678"/>
          <exon e_start="35402" e_stop="35510"/>
          <exon e_start="36794" e_stop="36924"/>
          <exon e_start="37456" e_stop="37729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGAAACTCTTCTCTGGAAGTTGAAGCTTCTAAGATCTGCTTCATCTTATTCAAATTCCCGTCTCCATGCTGTTAATGCTGAAGTACTTGTGATTGCTAGGTTTGACCTCTATCCTCTTTATATTATTGTGAGTTTTTAGCTTAAAGCTTTCTGCTCTATTCTGAAGATTTATATGCTAGACCTTGTAATTATGCCTCAGAGGTCCTTCAAGTCCATTAAACTGAAGAATTACTCTATGTTTCTTCACTTTTTCTTCTTTGTTTTTATCTTCCTTTTCTTTTTATCATTGATTATCTCATACAGTACTGAGCATATGAAGTAGTATTTGAACCAAACCATTTACTTCAAATGTCTTGCACTACATTGAAGATGAAGTTCATGAGTACAGTCTATTATGGGTAGTTTTATCAATCACTCTATGACATTGCAATAGTCAATTTGATGTGGTTGTATCTGGGTCAAGACCTCATGCAAAACTAAAGGTGAAAATAACACTCTCTACTAGGCATTCATCAGTAATTTTTTAGGGGTCATAATAGTTAAAAAGCTTCAATTCTTCCCATTATAAATATCAATTTAGATTCCATGATGTGTTTAACCTTTCGTAGTTGGTGTTCTGGAAGATAAAAAGGATATCATGAAACCTAAATTGATATATATTTTTACGAGCATAATTCTTCCTTGTGAAGGAAACTTCAGAATGATGCTAAAATTTTCTGTAGCATATTCTCTCTGTATTCCATGTGTGCATGAGCTTGAATTTGTTCTACCTATTGGATATACTTGTTTGAAGAAGTGATGGAATTGAATTGCAATGTATAGTGGCAAGGATAACATGCTTCCAAGTGAGAATGAAGCTCAGAGGCTTGGAAATTCATTAAGAAACTGCACAGTACGATACTTCAAAGACAACGGGCATACTATTTTATTGGTAGGTGAGGAGTGCTTCTCTTTTGGACATCTTAAAATGCTTCTTGTTTTTTTCTAATTCTAAAATAATATCTGCTTTCTTTGATTAGTTATTGTCCTTGGTATATACATATACATATATATAGTAAATTTAATTGGATGGTTGCTGTAGAGAGCCTAAATACTGTTATTTCTAAATTTGAAATTCGATCTGATTCTCAATTGTTTTTCTTGTTTCTCTGGTAGGCAGTAACCTATGGATATCGAGACACCATTATATTCTTACTTTAACTTTTTATTTTTTGATAACCAAGAAATCCTGAAGGCCAATGTTGCACAGCTTGAAACTCATTGGATACTATATGATGGGCTGACCTCTCTACCCTTCTCCACTTAAATTCTAGGCTTTTGCTTGCTGCAGGGTTTGAACTCATGCACGAGCCTAGCCCATATATCACATTTTCCCGCTCTTACCACTGGACAAAATCCCCGGGGGATTGAATGCTTACTCTAAAATAATGAGCTGAATAAGTTGTTTGCTCAATTATTTAAACTTTGTATGGAACTATTCCCACGTTCAAATATATGACAGCTCTTGCTACTTGCACTTCTTAGTTTTTATAGTGAGAATTGTCAACCATTGGGTAGTGTGAAAGATTTCCGTTAGCCCAAGTTTGTCTGCGCGTTTTGGATTTTTTTTCTATCAAGTGGTGTTCAGTGCTAGGTATAATAGTATTTGAGCATGTTTAAAAGTTTATCAAGTTTAACATTCAGTCTGCATTAAAAGTAAAATAGTCCATTTTACACAACTATTGATTATCTTATAAAGGGCCGCCTTCTGTTTGTTTCTTTGTTTTTCCTTTATTGTTGCTTAACTTATATATCTTGACATACTTTTTCGATATATCTTGACATACTTTTTCGATAGGCTCTCTAAAATATAAAGCTACAGTAATTTTATATATTCATGCCTGGTGAGAGTTAAGATAAGTTGGCACCTATTTCTTTTACGTTTCAATTAATGTACATCCTCAAAGCATGAGCGGGTGAGTGGAAAATCCTACTTTTTGCTAAATATAGATGAAATCTATTTTTCACCTCTTCTATGTTTTAGCATTTTAAAGTTATCTGAAAGCAATGGAAAATCTAATCAAAAGGCAGACTGTTGGAATTTCTTTATTGGATTTTTGGGTTTTGTGGCGAGTCTGGTGGTTTTATTTCTGTGATAAGACCTTATGCTATGTTGATGGATTCTGTTACGGGATCTTTATAGCAGACGGATTGATTGCCATTTTGACTATGCAGGAAGATGGTATTAATCTGCTATCCATCATCAAAGCTACTAGCAAATATCGTCGTTCAAAAAGGCGTGATTATGTCAAAGATTTTCTGCCTCCTAGTAAGTCAGAGTTCAAGAACGCAATCAAGAACAATAGGTAATTTGAGCATCAGGTGAATCAGGCAAACACTTGACTGCAGTAGGCATCGAGCATAAGCTTATCCCCTTAACTTTTTTCTATTTTTCCCTTTAGTTCTTTTTTTCTCATTCTTCTCTTTCCCTTTAGATTCCAAGTTCTGTTTTTTCCTTCTGTGTCTATGGTGAAATACATACCTTGCCAAGCAATGTAATTTACAAATGTGGGTCAACTTGAAATATAGATTAACATTAACCTAATTAAAAGACTCATTGTGAACCCCTCCTGGTTAGACCAAAAATTCAAGTAACCGGCTGCATTAGAAGTAAGTTTGGAAGTGATTAGAGGAATGGGTGATTACAAGCAGGGGAACACACTAATTTGTCTAGGAATGTCTTGGGTCATGAAGCTACAACCTTTGCATTAGTGTTTCTTTTTTCCTTTAATACGTCAATCAAATTCATATATTTTCAGCTCCCTTTTAATGTATAACGCGTGCTTGTTAATATCCTGCATCTTGAAGCTAATATATGCAAAAAAATGTTAATGCAGTTGGTATCTCAATATTACTGGACCAGTTATGCTGTCCACGATGGAAAATGGGAAAATTGTTAGAGGTCTAGCGGGGGTCCCACGTGAAGGCCCTGTATTGTTGGTCGGTTATCACATGCTTATGGGTTTAGAAATTGTCCCTCTTGTTCAAGAATATATGATGCAGACGAAAATTTTACTTCGTGGAATAGCACATCCATCGTTGTTTACTCAGCTGGTTGAGAGTCGACCTGATGCAAGCTCATTCA-TTGATATGCTGAAACTATATGGAGCT</genome_strand>
        <mrna_strand>CGAAGGAAACTCTTCTCTGGAAGTTGAAGCTTCTTAGATCTGCTTCATCTTATTCAAATTCCCGTCTCCATGCTGTTAATGCTGAAGTACTTGTGATTGCTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAAGGATAACATGCTTCCAAGTGAGAATGAAGCTCAGAGGCTTAAAAATTCATTAAGAAACTGCACAGTACGATACTTCAAAGACAACGGGCATACTATTTTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGGTATTAATCTGCTATCCATCATCAAAGCTACTGGCAAATATCGTCGTTCAAAAAGGCATGATTATGTCATGGATTTTCTGCCTCCTAGTAAGTCAGAGTTCAAGAAAACAACCAAGGACAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTATTTCAATTTTACTGGACCAGTTATGCTGTCCACGATGGAAAATGGGAAAATTGTCAGAGGTCTAGCGGGGGTCCCACGTGAAGGCCCTGTATTGTTGGTCGGTTATCACATGCTTATGGGTTTAGAAATTGTCCCTCTTGTTCATGAATATTTGATGCAGACGAAAATTTTACTTCGTGGAATAGCACATCCAGCGTTGTTTACTCAGCTGGTCGAGAGTCGACCTAATGCAANCTCATTCATTTGATATGCTGAAACTATATGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712351" ref_strand="+" ref_description="SGN-E712351 [FB04CD11]">
      <seq>gccagcaacttttttaagttgcttgcaacaaagtcacatgttctgttgtatcctggtggtgcccgtgaggccttacatcgtaagggagaagagtacaaggtgatatggcctgaccaaccagaattcatcagaatggctgcaaaatttggtgcgacaattgtgccatttggggttgtaggagaagatgatatagcacagttagttctcgactatgacgacctaaaaagtatacctatattgggtgatcggataaggagtgagaacgaagaggcagccaggaggggcttagcagtcagggcggacatggacggggagattgccaaccaaatgttgtatatccctggccttttacctaagatacccggtcgtttttacttcttttttgggaaaccaattcatacaaagggaaggcaagacctggtgaaagatagagaaaaagcaagagaattatacttgcaggtaaaatctgaagttcaaaataacatgaattatttgcttaagaaaagagaggaggatccttaccggaacttcatcgatcgaaccatgtatagagcattttctgccacttctggtgatgtcccaacatttgatttttagatgaccagttagaagtccgattatttttttttttgggtaaaggctcttacccattgtttaattctatgttggaatttttttaaaaaaatatttatgttccaatatgagcaagctttccttcccccaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="37442" stop="41440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37742" g_stop="37825" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37826" i_stop="39195" i_length="1370">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39196" g_stop="39309" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="198" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39310" i_stop="40489" i_length="1180">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40490" g_stop="40587" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="296" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40588" i_stop="40708" i_length="121">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40709" g_stop="41141" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="732" r_length="436" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E712351" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37742" e_stop="37825"/>
          <exon e_start="39196" e_stop="39309"/>
          <exon e_start="40490" e_stop="40587"/>
          <exon e_start="40709" e_stop="41141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGCAACTTTTTTAAGTTGCTTGCAACAAAGTCACATGTTCTGTTGTATCCTGGTGGTGCCCGTGAGGCCTTACATCGTAAGGTGTGTTATAATCTTCTCCTTGGTTAATTCCATCTTCTATATTTCTCAAAATGGAATCTTCGTACAATCCTTATTCATGCATTCACCTAGAAGTATAATAAAATTGCTATCGCTTTAAAATCATTGTCAATTCCAGTTCCTTACCTTTTTGCTAAAATTACTGGTACTTAATACTGGAATTTTCTGCTTGAAGATGCATTTTCTTCTGTTATAAAGGATTTTAACGAATAGTTGGACAACTTCATTTTTCTTTTGAATTTGATGACGACATCTTGCAATGCAAAGATAACAAAGCAATGTCATTTTGTTGTTAAATGAGTAAAGGTTTCATGTAATCCATACTATCCGTGCCATTATCAGCATTTCAGCTGTAAATGGTTTTTAGATGCCTTAGAGAATCCATGCCCTTCTTGAGTCTTGTAGACCCAAGGTTTTCTCCAATTTATTGGATTGAGATGTTAATTTTAAATTTTATTTTTTTCTTTCTTTTTGTAAATGAACTTGTAAGGAAAAATCGAGAATTTACTATTGAAAGCAACGTAATCGTAGATATTGTCACCCTAATTCAATGGAAGTGTTGAATTACGAGAACGTCCTCATTTAAAAGTTAAAAATTATTACAGTGGAGTCACATATATTTATTTAATTATGTCTTTAACATGCTGGTCAACTCTTTTTCATGGACCAAGCACATGAAACTTTTTTGATGAGAGGTGTCGTTGAAGCTCGAATTCCCAACACTTGTGTTGGCTCTGCTACCATGTAGAAAATAAGAAAAGAGAAAGATGTATTGAACTGGCGATATGATGAATGCATAACACACTTTATGTGTCAACCAGAATGCACATAACATTTGTTCAATGTGGATAATATCGTAGTTACGAATTTAATCCTGAAATGTAACTCTATACTATGTTATTTTAACCGTCAATACTTCACTTCTAACATAACACAACAAGCACCTTATATTCTTGAATTTCGACAGAGCTGACCAGGTACTCCCAATCTATGTTGCTCGGACTCTTCAAAAATGTCAACGGGTGCGTGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAGAATCTGACACGGGTGCGGCATCAAAGCGAGGAGTCCGCGCAACTTAGCTCCCAATAACAAAGTGATTATATTCTGGACATGTTTGGTTCTGATTTTCATCTCTTATTAGCTTTCTGTGCTGTTTTTTAACTGCTATTCACAAAGCTATCTTGAAGAGAAAAACTGGTGACTGGCTGTCACTCAGTGTACCTCATTACAATGAAAGAAAAATAACAATAACCTCATTTTCAAGTTAGAGTTTTCCCTTCTTTAGGTTATTTCCTTATGTTGATGGTTTTCTATTTGTTGTAGGGAGAAGAGTACAAGGTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAGGTTTGTTAGTCCTACATATTTTTTCCTTTGCAACATTAGAAGTAGTAATGATGCTCTTTTGGTTCCTCGATATTACGTCCCCAAAAAGCTTGTTAGCTTGTTTCCTTTCATGTTTGGAAGCTGCAAAGAGGTTTTCTCGTCTCTCGGGTATTTTGCATGTTTGGAGGAATTAACTTTGTAGGAGAAACTTAACTCATAGAAATTAAAAAAAGAGGAACAAGCAGGAAGTCTTCACTTATTCTCCTTTGACACGTATGTAGAAACTGGTTCAACTAAAAATGGATTATACTGAGGAGTTGCTTCTTCCCTTTTCTCACCATTTCCTGCCAAAGGGGGATTCTTGTACTTCTATCTTTCTTTTGTGCAACAAGTCAATGACAATTTCTATCTCAACCATCGGAAATCAGAAAACTAGTTACTCTGTGTTTCAATTTGTTTGCTTGGTTTTAACTCTGCACATAGTTTAAGTAAGTAAAGCAAATTTTTGAATCTTGTGGTTTTAAACTAAAGATATGTAGAATTTCAAAATGTCCTTCAATCTTGTGATCTTAAACATGTCACGTGGAAGTAAGAATTAAAGAGCTATCGAAAAAGGAAAAAGACATTCTTTTTAAGCAGACTAAAATGGAAAGTAAGACAAACAAATTCAGACGGAGGGGTTATATTTTACTTTTTGCATTTTGTTCCTATTATAAGCTGTTGATACTTTCATCTGATGAGATGAACAAATTTGAACACTCTTCAAGGCTTGAGCATTCTTTTCAGTGAAACTTGTGCATCTGTTTAACACCATTGACCCTTTATTTCTTCTTCTTTTTTTGAGGATACAAATATGACAGTCCAATCTAGCCAGTGAGCCACCATCCTGATTCATGTGATTCGATATATTTCTTAACTAGGTTCAACGAGTTAAAGTCTCAAAAATTAATAGTAAAAGATATCCTTCTTGGGAGGTGGATATTATTAATCCAAGAGATTAATCCAATGGTTTGGTTTTGGGGGTGGGGTGGGGGGGGGTGCAGCTTTGAGCTTAAGGTCAATTACCCATTGACTTTCTTGCCAAGCTCATGATTCCGCTAAGAAATAGTCCAAAATCAGAAATACGGACATTCAAATAGCAACATATTGAATGCATTCTATATACAGAACTGTTGCCTGATCTTATATGTTTTGATTGCAGTTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAGGTCATCTTCTAATATATTGTTTTTGTCTCATTCCTAATATTTGCTCCAAGCTCACTTGCTTCTTTCATTCTTAACCATTTATTTTTACACCCTTTAACCATCCCATTAAATTTTTCTATAGGGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTA-TTATTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAA-TTTTTT-AAAAAATATTTATGTTCCAATATGAGCAAGCTTTCCTTCCACCAATAACTAAG</genome_strand>
        <mrna_strand>GCCAGCAACTTTTTTAAGTTGCTTGCAACAAAGTCACATGTTCTGTTGTATCCTGGTGGTGCCCGTGAGGCCTTACATCGTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAGAGTACAAGGTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAG.........................................................................................................................GGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTATTTTTTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGGAATTTTTTTAAAAAAATATTTATGTTCCAATATGAGCAAGCTTTCCTTCCCCCAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538641" ref_strand="+" ref_description="SGN-E538641 [TUS-57-P20]">
      <seq>gtgatatggcctgaccaaccagaattcatcagaatggctgcaaaatttggtgcgacaattgtgccatttggggttgtaggagaagatgatatagcacagttagttctcgactatgacgacctaaaaagtatacctatattgggtgatcggataaggagtgagaacgaagaggcagccaggaggggcttagcagtcagggcggacatggacggggagattgccaaccaaatgttgtatatccctggccttttacctaagatacccggtcgtttttacttcttttttgggaaaccaattcatacaaagggaaggcaagacctggtgaaagatagagaaaaagcaagagaattatacttgcaggtaaaatctgaagttcaaaataacatgaattatttgcttaagaaaagagaggaggatccttaccggaacttcatcgatcgaaccatgtatagagcattttctgccacttctggtgatgtcccaacatttgatttttagatgaccagttagaagtccgattatttttttttttggggaaaggctcttacccattgtttaattctatgttgtaattcttttaaaaaaatatttatgttccaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="38911" stop="41417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39211" g_stop="39309" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39310" i_stop="40489" i_length="1180">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40490" g_stop="40587" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="197" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40588" i_stop="40708" i_length="121">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40709" g_stop="41120" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="612" r_length="415" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E538641" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39211" e_stop="39309"/>
          <exon e_start="40490" e_stop="40587"/>
          <exon e_start="40709" e_stop="41120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAGGTTTGTTAGTCCTACATATTTTTTCCTTTGCAACATTAGAAGTAGTAATGATGCTCTTTTGGTTCCTCGATATTACGTCCCCAAAAAGCTTGTTAGCTTGTTTCCTTTCATGTTTGGAAGCTGCAAAGAGGTTTTCTCGTCTCTCGGGTATTTTGCATGTTTGGAGGAATTAACTTTGTAGGAGAAACTTAACTCATAGAAATTAAAAAAAGAGGAACAAGCAGGAAGTCTTCACTTATTCTCCTTTGACACGTATGTAGAAACTGGTTCAACTAAAAATGGATTATACTGAGGAGTTGCTTCTTCCCTTTTCTCACCATTTCCTGCCAAAGGGGGATTCTTGTACTTCTATCTTTCTTTTGTGCAACAAGTCAATGACAATTTCTATCTCAACCATCGGAAATCAGAAAACTAGTTACTCTGTGTTTCAATTTGTTTGCTTGGTTTTAACTCTGCACATAGTTTAAGTAAGTAAAGCAAATTTTTGAATCTTGTGGTTTTAAACTAAAGATATGTAGAATTTCAAAATGTCCTTCAATCTTGTGATCTTAAACATGTCACGTGGAAGTAAGAATTAAAGAGCTATCGAAAAAGGAAAAAGACATTCTTTTTAAGCAGACTAAAATGGAAAGTAAGACAAACAAATTCAGACGGAGGGGTTATATTTTACTTTTTGCATTTTGTTCCTATTATAAGCTGTTGATACTTTCATCTGATGAGATGAACAAATTTGAACACTCTTCAAGGCTTGAGCATTCTTTTCAGTGAAACTTGTGCATCTGTTTAACACCATTGACCCTTTATTTCTTCTTCTTTTTTTGAGGATACAAATATGACAGTCCAATCTAGCCAGTGAGCCACCATCCTGATTCATGTGATTCGATATATTTCTTAACTAGGTTCAACGAGTTAAAGTCTCAAAAATTAATAGTAAAAGATATCCTTCTTGGGAGGTGGATATTATTAATCCAAGAGATTAATCCAATGGTTTGGTTTTGGGGGTGGGGTGGGGGGGGGTGCAGCTTTGAGCTTAAGGTCAATTACCCATTGACTTTCTTGCCAAGCTCATGATTCCGCTAAGAAATAGTCCAAAATCAGAAATACGGACATTCAAATAGCAACATATTGAATGCATTCTATATACAGAACTGTTGCCTGATCTTATATGTTTTGATTGCAGTTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAGGTCATCTTCTAATATATTGTTTTTGTCTCATTCCTAATATTTGCTCCAAGCTCACTTGCTTCTTTCATTCTTAACCATTTATTTTTACACCCTTTAACCATCCCATTAAATTTTTCTATAGGGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTA-TTATTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAATT-TTTT-AAAAAATATTTATGTTCCAATATGAGCAAGCT</genome_strand>
        <mrna_strand>GTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAG.........................................................................................................................GGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTATTTTTTTTTTTGGGGAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAATTCTTTTAAAAAAATATTTATGTTCCAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538634" ref_strand="+" ref_description="SGN-E538634 [TUS-57-P16]">
      <seq>gtgatatggcctgaccaaccagaattcatcagaatggctgcaaaatttggtgcgacaattgtgccatttggggttgtaggagaagatgatatagcacagttagttctcgactatgacgacctaaaaagtatacctatattgggtgatcggataaggagtgagaacgaagaggcagccaggaggggcttagcagtcagggcggacatggacggggagattgccaaccaaatgttgtatatccctggccttttacctaagatacccggtcgtttttacttcttttttgggaaaccaattcatacaaagggaaggcaagacctggtgaaagatagagaaaaagcaagagaattatacttgcaggtaaaatctgaagttcaaaataacatgaattatttgcttaagaaaagagaggaggatccttaccggaacttcatcgatcgaaccatgtatagagcattttctgccacttctggtgatgtcccaacatttgatttttagatgaccagttagaagtccgattatttttttttttgggtaaaggctcttacccattgtttaattctatgttgtaatttttttaaaaaaatatttatgttccaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="38911" stop="41417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39211" g_stop="39309" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39310" i_stop="40489" i_length="1180">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40490" g_stop="40587" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="197" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40588" i_stop="40708" i_length="121">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40709" g_stop="41120" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="612" r_length="415" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E538634" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39211" e_stop="39309"/>
          <exon e_start="40490" e_stop="40587"/>
          <exon e_start="40709" e_stop="41120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAGGTTTGTTAGTCCTACATATTTTTTCCTTTGCAACATTAGAAGTAGTAATGATGCTCTTTTGGTTCCTCGATATTACGTCCCCAAAAAGCTTGTTAGCTTGTTTCCTTTCATGTTTGGAAGCTGCAAAGAGGTTTTCTCGTCTCTCGGGTATTTTGCATGTTTGGAGGAATTAACTTTGTAGGAGAAACTTAACTCATAGAAATTAAAAAAAGAGGAACAAGCAGGAAGTCTTCACTTATTCTCCTTTGACACGTATGTAGAAACTGGTTCAACTAAAAATGGATTATACTGAGGAGTTGCTTCTTCCCTTTTCTCACCATTTCCTGCCAAAGGGGGATTCTTGTACTTCTATCTTTCTTTTGTGCAACAAGTCAATGACAATTTCTATCTCAACCATCGGAAATCAGAAAACTAGTTACTCTGTGTTTCAATTTGTTTGCTTGGTTTTAACTCTGCACATAGTTTAAGTAAGTAAAGCAAATTTTTGAATCTTGTGGTTTTAAACTAAAGATATGTAGAATTTCAAAATGTCCTTCAATCTTGTGATCTTAAACATGTCACGTGGAAGTAAGAATTAAAGAGCTATCGAAAAAGGAAAAAGACATTCTTTTTAAGCAGACTAAAATGGAAAGTAAGACAAACAAATTCAGACGGAGGGGTTATATTTTACTTTTTGCATTTTGTTCCTATTATAAGCTGTTGATACTTTCATCTGATGAGATGAACAAATTTGAACACTCTTCAAGGCTTGAGCATTCTTTTCAGTGAAACTTGTGCATCTGTTTAACACCATTGACCCTTTATTTCTTCTTCTTTTTTTGAGGATACAAATATGACAGTCCAATCTAGCCAGTGAGCCACCATCCTGATTCATGTGATTCGATATATTTCTTAACTAGGTTCAACGAGTTAAAGTCTCAAAAATTAATAGTAAAAGATATCCTTCTTGGGAGGTGGATATTATTAATCCAAGAGATTAATCCAATGGTTTGGTTTTGGGGGTGGGGTGGGGGGGGGTGCAGCTTTGAGCTTAAGGTCAATTACCCATTGACTTTCTTGCCAAGCTCATGATTCCGCTAAGAAATAGTCCAAAATCAGAAATACGGACATTCAAATAGCAACATATTGAATGCATTCTATATACAGAACTGTTGCCTGATCTTATATGTTTTGATTGCAGTTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAGGTCATCTTCTAATATATTGTTTTTGTCTCATTCCTAATATTTGCTCCAAGCTCACTTGCTTCTTTCATTCTTAACCATTTATTTTTACACCCTTTAACCATCCCATTAAATTTTTCTATAGGGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTA-TTATTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAA-TTTTTT-AAAAAATATTTATGTTCCAATATGAGCAAGCT</genome_strand>
        <mrna_strand>GTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAG.........................................................................................................................GGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTATTTTTTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAATTTTTTTAAAAAAATATTTATGTTCCAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538632" ref_strand="+" ref_description="SGN-E538632 [TUS-57-P16](-)">
      <seq>gtgatatggcctgaccaaccagaattcatcagaatggctgcaaaatttggtgcgacaattgtgccatttggggttgtaggagaagatgatatagcacagttagttctcgactatgacgacctaaaaagtatacctatattgggtgatcggataaggagtgagaacgaagaggcagccaggaggggcttagcagtcagggcggacatggacggggagattgccaaccaaatgttgtatatccctggccttttacctaagatacccggtcgtttttacttcttttttgggaaaccaattcatacaaagggaaggcaagacctggtgaaagatagagaaaaagcaagagaattatacttgcaggtaaaatctgaagttcaaaataacatgaattatttgcttaagaaaagagaggaggatccttaccggaacttcatcgatcgaaccatgtatagagcattttctgccacttctggtgatgtcccaacatttgatttttagatgaccagttagaagtccgattatttttttttttgggtaaaggctcttacccattgtttaattctatgttgtaatttttttaaaaaaatatttatgttccaataaaaaaagaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="38911" stop="41410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39211" g_stop="39309" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39310" i_stop="40489" i_length="1180">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40490" g_stop="40587" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="197" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40588" i_stop="40708" i_length="121">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40709" g_stop="41109" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="601" r_length="404" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="602" polyA_stop="620"/>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E538632" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39211" e_stop="39309"/>
          <exon e_start="40490" e_stop="40587"/>
          <exon e_start="40709" e_stop="41109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAGGTTTGTTAGTCCTACATATTTTTTCCTTTGCAACATTAGAAGTAGTAATGATGCTCTTTTGGTTCCTCGATATTACGTCCCCAAAAAGCTTGTTAGCTTGTTTCCTTTCATGTTTGGAAGCTGCAAAGAGGTTTTCTCGTCTCTCGGGTATTTTGCATGTTTGGAGGAATTAACTTTGTAGGAGAAACTTAACTCATAGAAATTAAAAAAAGAGGAACAAGCAGGAAGTCTTCACTTATTCTCCTTTGACACGTATGTAGAAACTGGTTCAACTAAAAATGGATTATACTGAGGAGTTGCTTCTTCCCTTTTCTCACCATTTCCTGCCAAAGGGGGATTCTTGTACTTCTATCTTTCTTTTGTGCAACAAGTCAATGACAATTTCTATCTCAACCATCGGAAATCAGAAAACTAGTTACTCTGTGTTTCAATTTGTTTGCTTGGTTTTAACTCTGCACATAGTTTAAGTAAGTAAAGCAAATTTTTGAATCTTGTGGTTTTAAACTAAAGATATGTAGAATTTCAAAATGTCCTTCAATCTTGTGATCTTAAACATGTCACGTGGAAGTAAGAATTAAAGAGCTATCGAAAAAGGAAAAAGACATTCTTTTTAAGCAGACTAAAATGGAAAGTAAGACAAACAAATTCAGACGGAGGGGTTATATTTTACTTTTTGCATTTTGTTCCTATTATAAGCTGTTGATACTTTCATCTGATGAGATGAACAAATTTGAACACTCTTCAAGGCTTGAGCATTCTTTTCAGTGAAACTTGTGCATCTGTTTAACACCATTGACCCTTTATTTCTTCTTCTTTTTTTGAGGATACAAATATGACAGTCCAATCTAGCCAGTGAGCCACCATCCTGATTCATGTGATTCGATATATTTCTTAACTAGGTTCAACGAGTTAAAGTCTCAAAAATTAATAGTAAAAGATATCCTTCTTGGGAGGTGGATATTATTAATCCAAGAGATTAATCCAATGGTTTGGTTTTGGGGGTGGGGTGGGGGGGGGTGCAGCTTTGAGCTTAAGGTCAATTACCCATTGACTTTCTTGCCAAGCTCATGATTCCGCTAAGAAATAGTCCAAAATCAGAAATACGGACATTCAAATAGCAACATATTGAATGCATTCTATATACAGAACTGTTGCCTGATCTTATATGTTTTGATTGCAGTTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAGGTCATCTTCTAATATATTGTTTTTGTCTCATTCCTAATATTTGCTCCAAGCTCACTTGCTTCTTTCATTCTTAACCATTTATTTTTACACCCTTTAACCATCCCATTAAATTTTTCTATAGGGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTA-TTATTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAA-TTTTTT-AAAAAATATTTATGTTCCAAT</genome_strand>
        <mrna_strand>GTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAG.........................................................................................................................GGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTATTTTTTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAATTTTTTTAAAAAAATATTTATGTTCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274516" ref_strand="+" ref_description="SGN-E274516 [cLEN-11-J23]">
      <seq>tgatatggcctgaccaaccagaattcatcagaatggctgcaaaatttggtgcgacaattgtgccatttggggttgtaggagaagatgatatagcacagttagttctcgactatgacgacctaaaaagtatacctatattgggtgatcggataaggagtgagaacgaagaggcagccaggaggggcttagcagtcagggcggacatggacggggagattgccaaccaaatgttgtatatccctggccttttacctaagatacccggtcgtttttacttcttttttgggaaaccaattcatacaaagggaaggcaagacctggtgaaagatagagaaaaagcaagagaattatacttgcaggtaaaatctgaagttcaaaataacatgaattatttgcttaagaaaagagaggaggatccttaccggaacttcatcgatcgaaccatgtatagagcattttctgccacttctggtgatgtcccaacatttgatttttagatgaccagttagaagtccgattatttttttttttgggtaaaggctcttacccattgnttaattctatgttgtaatttttttaaaaaaatatttatgttccaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="38912" stop="41417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39212" g_stop="39309" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39310" i_stop="40489" i_length="1180">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40490" g_stop="40587" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="196" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40588" i_stop="40708" i_length="121">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40709" g_stop="41120" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="611" r_length="415" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E274516" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39212" e_stop="39309"/>
          <exon e_start="40490" e_stop="40587"/>
          <exon e_start="40709" e_stop="41120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAGGTTTGTTAGTCCTACATATTTTTTCCTTTGCAACATTAGAAGTAGTAATGATGCTCTTTTGGTTCCTCGATATTACGTCCCCAAAAAGCTTGTTAGCTTGTTTCCTTTCATGTTTGGAAGCTGCAAAGAGGTTTTCTCGTCTCTCGGGTATTTTGCATGTTTGGAGGAATTAACTTTGTAGGAGAAACTTAACTCATAGAAATTAAAAAAAGAGGAACAAGCAGGAAGTCTTCACTTATTCTCCTTTGACACGTATGTAGAAACTGGTTCAACTAAAAATGGATTATACTGAGGAGTTGCTTCTTCCCTTTTCTCACCATTTCCTGCCAAAGGGGGATTCTTGTACTTCTATCTTTCTTTTGTGCAACAAGTCAATGACAATTTCTATCTCAACCATCGGAAATCAGAAAACTAGTTACTCTGTGTTTCAATTTGTTTGCTTGGTTTTAACTCTGCACATAGTTTAAGTAAGTAAAGCAAATTTTTGAATCTTGTGGTTTTAAACTAAAGATATGTAGAATTTCAAAATGTCCTTCAATCTTGTGATCTTAAACATGTCACGTGGAAGTAAGAATTAAAGAGCTATCGAAAAAGGAAAAAGACATTCTTTTTAAGCAGACTAAAATGGAAAGTAAGACAAACAAATTCAGACGGAGGGGTTATATTTTACTTTTTGCATTTTGTTCCTATTATAAGCTGTTGATACTTTCATCTGATGAGATGAACAAATTTGAACACTCTTCAAGGCTTGAGCATTCTTTTCAGTGAAACTTGTGCATCTGTTTAACACCATTGACCCTTTATTTCTTCTTCTTTTTTTGAGGATACAAATATGACAGTCCAATCTAGCCAGTGAGCCACCATCCTGATTCATGTGATTCGATATATTTCTTAACTAGGTTCAACGAGTTAAAGTCTCAAAAATTAATAGTAAAAGATATCCTTCTTGGGAGGTGGATATTATTAATCCAAGAGATTAATCCAATGGTTTGGTTTTGGGGGTGGGGTGGGGGGGGGTGCAGCTTTGAGCTTAAGGTCAATTACCCATTGACTTTCTTGCCAAGCTCATGATTCCGCTAAGAAATAGTCCAAAATCAGAAATACGGACATTCAAATAGCAACATATTGAATGCATTCTATATACAGAACTGTTGCCTGATCTTATATGTTTTGATTGCAGTTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAGGTCATCTTCTAATATATTGTTTTTGTCTCATTCCTAATATTTGCTCCAAGCTCACTTGCTTCTTTCATTCTTAACCATTTATTTTTACACCCTTTAACCATCCCATTAAATTTTTCTATAGGGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTA-TTATTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAA-TTTTTT-AAAAAATATTTATGTTCCAATATGAGCAAGCT</genome_strand>
        <mrna_strand>TGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAG.........................................................................................................................GGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTATTTTTTTTTTTGGGTAAAGGCTCTTACCCATTGNTTAATTCTATGTTGTAATTTTTTTAAAAAAATATTTATGTTCCAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272172" ref_strand="+" ref_description="SGN-E272172 [cLEN-4-M23]">
      <seq>tgatatggcctgaccaaccagaattcatcagaatggctgcaaaatttggtgcgacaattgtgccatttggggttgtaggagaagatgatatagcacagttagttctcgactatgacgacctaaaaagtatacctatattgggtgatcggataaggagtgagaacgaagaggcagccaggaggggcttagcagtcagggcggacatggacggggagattgccaaccaaatgttgtatatccctggccttttacctaagatacccggtcgtttttacttcttttttgggaaaccaattcatacaaagggaaggcaagacctggtgaaagatagagaaaaagcaagagaattatacttgcaggtaaaatctgaagttcaaaataacatgaattatttgcttaagaaaagagaggaggatccttaccggaacttcatcgatcgaaccatgtatagagcattttctgccacttctggtgatgtcccaacatttgatttttagatgaccagttagaagtccgattatttttttttttgggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="38912" stop="41348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39212" g_stop="39309" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39310" i_stop="40489" i_length="1180">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40490" g_stop="40587" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="196" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40588" i_stop="40708" i_length="121">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40709" g_stop="41048" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="537" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E272172" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39212" e_stop="39309"/>
          <exon e_start="40490" e_stop="40587"/>
          <exon e_start="40709" e_stop="41048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAGGTTTGTTAGTCCTACATATTTTTTCCTTTGCAACATTAGAAGTAGTAATGATGCTCTTTTGGTTCCTCGATATTACGTCCCCAAAAAGCTTGTTAGCTTGTTTCCTTTCATGTTTGGAAGCTGCAAAGAGGTTTTCTCGTCTCTCGGGTATTTTGCATGTTTGGAGGAATTAACTTTGTAGGAGAAACTTAACTCATAGAAATTAAAAAAAGAGGAACAAGCAGGAAGTCTTCACTTATTCTCCTTTGACACGTATGTAGAAACTGGTTCAACTAAAAATGGATTATACTGAGGAGTTGCTTCTTCCCTTTTCTCACCATTTCCTGCCAAAGGGGGATTCTTGTACTTCTATCTTTCTTTTGTGCAACAAGTCAATGACAATTTCTATCTCAACCATCGGAAATCAGAAAACTAGTTACTCTGTGTTTCAATTTGTTTGCTTGGTTTTAACTCTGCACATAGTTTAAGTAAGTAAAGCAAATTTTTGAATCTTGTGGTTTTAAACTAAAGATATGTAGAATTTCAAAATGTCCTTCAATCTTGTGATCTTAAACATGTCACGTGGAAGTAAGAATTAAAGAGCTATCGAAAAAGGAAAAAGACATTCTTTTTAAGCAGACTAAAATGGAAAGTAAGACAAACAAATTCAGACGGAGGGGTTATATTTTACTTTTTGCATTTTGTTCCTATTATAAGCTGTTGATACTTTCATCTGATGAGATGAACAAATTTGAACACTCTTCAAGGCTTGAGCATTCTTTTCAGTGAAACTTGTGCATCTGTTTAACACCATTGACCCTTTATTTCTTCTTCTTTTTTTGAGGATACAAATATGACAGTCCAATCTAGCCAGTGAGCCACCATCCTGATTCATGTGATTCGATATATTTCTTAACTAGGTTCAACGAGTTAAAGTCTCAAAAATTAATAGTAAAAGATATCCTTCTTGGGAGGTGGATATTATTAATCCAAGAGATTAATCCAATGGTTTGGTTTTGGGGGTGGGGTGGGGGGGGGTGCAGCTTTGAGCTTAAGGTCAATTACCCATTGACTTTCTTGCCAAGCTCATGATTCCGCTAAGAAATAGTCCAAAATCAGAAATACGGACATTCAAATAGCAACATATTGAATGCATTCTATATACAGAACTGTTGCCTGATCTTATATGTTTTGATTGCAGTTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAGGTCATCTTCTAATATATTGTTTTTGTCTCATTCCTAATATTTGCTCCAAGCTCACTTGCTTCTTTCATTCTTAACCATTTATTTTTACACCCTTTAACCATCCCATTAAATTTTTCTATAGGGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTA-TTATTTTTTTGGGTAA</genome_strand>
        <mrna_strand>TGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAG.........................................................................................................................GGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTATTTTTTTTTTTGGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548089" ref_strand="+" ref_description="SGN-E548089 [TUS-57-P20](-)">
      <seq>gcctgaccaaccagaattcatcagaatggctgcaaaatttggtgcgacaattgtgccatttggggttgtaggagaagatgatatagcacagttagttctcgactatgacgacctaaaaagtatacctatattgggtgatcggataaggagtgagaacgaagaggcagccaggaggggcttagcagtcagggcggacatggacggggagattgccaaccaaatgttgtatatccctggccttttacctaagatacccggtcgtttttacttcttttttgggaaaccaattcatacaaagggaaggcaagacctggtgaaagatagagaaaaagcaagagaattatacttgcaggtaaaatctgaagttcaaaataacatgaattatttgcttaagaaaagagaggaggatccttaccggaacttcatcgatcgaaccatgtatagagcattttctgccacttctggtgatgtcccaacatttgatttttagatgaccagttagaagtccgattatttttttttttgggtaaaggctcttacccattgtttaattctatgttgtaattttttaaaaaaatatttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="38919" stop="41404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39219" g_stop="39309" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39310" i_stop="40489" i_length="1180">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40490" g_stop="40587" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="189" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40588" i_stop="40708" i_length="121">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40709" g_stop="41103" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="586" r_length="397" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E548089" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39219" e_stop="39309"/>
          <exon e_start="40490" e_stop="40587"/>
          <exon e_start="40709" e_stop="41103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAGGTTTGTTAGTCCTACATATTTTTTCCTTTGCAACATTAGAAGTAGTAATGATGCTCTTTTGGTTCCTCGATATTACGTCCCCAAAAAGCTTGTTAGCTTGTTTCCTTTCATGTTTGGAAGCTGCAAAGAGGTTTTCTCGTCTCTCGGGTATTTTGCATGTTTGGAGGAATTAACTTTGTAGGAGAAACTTAACTCATAGAAATTAAAAAAAGAGGAACAAGCAGGAAGTCTTCACTTATTCTCCTTTGACACGTATGTAGAAACTGGTTCAACTAAAAATGGATTATACTGAGGAGTTGCTTCTTCCCTTTTCTCACCATTTCCTGCCAAAGGGGGATTCTTGTACTTCTATCTTTCTTTTGTGCAACAAGTCAATGACAATTTCTATCTCAACCATCGGAAATCAGAAAACTAGTTACTCTGTGTTTCAATTTGTTTGCTTGGTTTTAACTCTGCACATAGTTTAAGTAAGTAAAGCAAATTTTTGAATCTTGTGGTTTTAAACTAAAGATATGTAGAATTTCAAAATGTCCTTCAATCTTGTGATCTTAAACATGTCACGTGGAAGTAAGAATTAAAGAGCTATCGAAAAAGGAAAAAGACATTCTTTTTAAGCAGACTAAAATGGAAAGTAAGACAAACAAATTCAGACGGAGGGGTTATATTTTACTTTTTGCATTTTGTTCCTATTATAAGCTGTTGATACTTTCATCTGATGAGATGAACAAATTTGAACACTCTTCAAGGCTTGAGCATTCTTTTCAGTGAAACTTGTGCATCTGTTTAACACCATTGACCCTTTATTTCTTCTTCTTTTTTTGAGGATACAAATATGACAGTCCAATCTAGCCAGTGAGCCACCATCCTGATTCATGTGATTCGATATATTTCTTAACTAGGTTCAACGAGTTAAAGTCTCAAAAATTAATAGTAAAAGATATCCTTCTTGGGAGGTGGATATTATTAATCCAAGAGATTAATCCAATGGTTTGGTTTTGGGGGTGGGGTGGGGGGGGGTGCAGCTTTGAGCTTAAGGTCAATTACCCATTGACTTTCTTGCCAAGCTCATGATTCCGCTAAGAAATAGTCCAAAATCAGAAATACGGACATTCAAATAGCAACATATTGAATGCATTCTATATACAGAACTGTTGCCTGATCTTATATGTTTTGATTGCAGTTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAGGTCATCTTCTAATATATTGTTTTTGTCTCATTCCTAATATTTGCTCCAAGCTCACTTGCTTCTTTCATTCTTAACCATTTATTTTTACACCCTTTAACCATCCCATTAAATTTTTCTATAGGGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTA-TTATTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAATTTTTT-AAAAAATATTTATGT</genome_strand>
        <mrna_strand>GCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAG.........................................................................................................................GGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTATTTTTTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAATTTTTTAAAAAAATATTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330838" ref_strand="-" ref_description="SGN-E330838 [cTOD-10-H5]">
      <seq>tgatatagcacagttagttctcgactatgacgacctaaaaagtatacctatattgggtgatcggataaggagtgagaacgaagaggcagccaggaggggcttagcagtcagggcggacatggacggggagattgccaaccaaatgttgtatatccctggccttttacctaagatacccggtcgtttttacttcttttttgggaaaccaattcatacaaagggaaggcaagacctggtgaaagatagagaaaaagcaagagaattatacttgcaggtaaaatctgaagttcaaaataacatgaattatttgcttaagaaaagagaggaggatccttaccggaacttcatcgatcgaaccatgtatagagcattttctgccacttctggtgatgtcccaacatttgatttttagatgaccagttagaagtccgattatttttttttttgggtaaaggctcttacccattgtttaattctatgttgtaatttttttaaaacaatatttatgttccaatatgagcaagctttccttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="40187" stop="41429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40490" g_stop="40587" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="111" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40588" i_stop="40708" i_length="121">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40709" g_stop="41129" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="535" r_length="424" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E330838" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330838" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40490" e_stop="40587"/>
          <exon e_start="40709" e_stop="41129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAGGTCATCTTCTAATATATTGTTTTTGTCTCATTCCTAATATTTGCTCCAAGCTCACTTGCTTCTTTCATTCTTAACCATTTATTTTTACACCCTTTAACCATCCCATTAAATTTTTCTATAGGGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTA-TTATTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAA-TTTTTTAAAA-AATATTTATGTTCCAATATGAGCAAGCTTTCCTTCCA</genome_strand>
        <mrna_strand>TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAG.........................................................................................................................GGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTATTTTTTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAATTTTTTTAAAACAATATTTATGTTCCAATATGAGCAAGCTTTCCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740570" ref_strand="+" ref_description="SGN-E740570 [LC22AA12]">
      <seq>caataaacataaagaaccagttatattctaaataatagttatggctagttttagcaagggtggaagttttaacagctatagtgactaccctgatcatgtttgtcgccctgtgattgttggacatagtgttgggggcttcatggtgagagctcaaagagttgttgaagttcgtcgtagttatggaatacccctgaatggtcatgtagatgagtacgatgtgcatgaagaatgggacgatgatagtccaaggaaagtcagtgacttcttccataaagttcataatgaagctagtcgaccaactcattccactcttttgagccctccaaagttgatcactgtaaggcctagttggacaagtgaagatcatgactctccaaagtatagggagcatcacgattttagtggcagccctcttcgtaataaatttgaagggtttcaccttcaaggtagtcgaggatcaagtccgtataagtacaagaatgatggttatggccactccatgggttctcccaaggctggccatgtgaaggactatggggtcaacaacacatgggattcaccaccaagatcaaggttaactgatgacgattgggatggcaggagagatcatgatgattatggcaagccaaaattcaatggaggttacaagataactagtgctccacttagccaggccacaaatgatataggcaagatccttggggtaggtagtaaacctttggctcctcctacttatgcaccaaaatcacattttccagcatcttactcaactccacatataaaagaaagttaccctgagagaactcaaggtgaaaagcctctggcttcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="41735" stop="43166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42034" g_stop="42866" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E740570" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42034" e_stop="42866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACATAAAGAACCAGTTATATTCTAAATAATAGTTATGGCTAGTTTTAGCAAGGGTGGAAGTTTTAACAGCTATAGTGACTACCCTGATCATGTTTGTCGCCCTGTGATTGTTGGACATAGTGTTGGGGGCTTCATGGTGAGAGCTCAAAGAGTTGTTGAAGTTCGTCGTAGTTATGGAATACCCCTGAATGGTCATGTAGATGAGTACGATGTGCATGAAGAATGGGACGATGATAGTCCAAGGAAAGTCAGTGACTTCTTCCATAAAGTTCATAATGAAGCTAGTCGACCAACTCATTCCACTCTTTTGAGCCCTCCAAAGTTGATCACTGTAAGGCCTAGTTGGACAAGTGAAGATCATGACTCTCCAAAGTATAGGGAGCATCACGATTTTAGTGGCAGCCCTCTTCGTAATAAATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTG</genome_strand>
        <mrna_strand>CAATAAACATAAAGAACCAGTTATATTCTAAATAATAGTTATGGCTAGTTTTAGCAAGGGTGGAAGTTTTAACAGCTATAGTGACTACCCTGATCATGTTTGTCGCCCTGTGATTGTTGGACATAGTGTTGGGGGCTTCATGGTGAGAGCTCAAAGAGTTGTTGAAGTTCGTCGTAGTTATGGAATACCCCTGAATGGTCATGTAGATGAGTACGATGTGCATGAAGAATGGGACGATGATAGTCCAAGGAAAGTCAGTGACTTCTTCCATAAAGTTCATAATGAAGCTAGTCGACCAACTCATTCCACTCTTTTGAGCCCTCCAAAGTTGATCACTGTAAGGCCTAGTTGGACAAGTGAAGATCATGACTCTCCAAAGTATAGGGAGCATCACGATTTTAGTGGCAGCCCTCTTCGTAATAAATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738188" ref_strand="+" ref_description="SGN-E738188 [LC12CG11]">
      <seq>cataaagaaccagttatattctaaataatagttatggctagttttagcaagggtggaagttttaacagctatagtgactaccctgatcatgtttgtcgccctgtgattgttggacatagtgttgggggcttcatggtgagagctcaaagagttgttgaagttcgtcgtagttatggaatacccctgaatggtcatgtagatgagtacgatgtgcatgaagaatgggacgatgatagtccaaggaaagtcagtgacttcttccataaagttcataatgaagctagtcgaccaactcattccactcttttgagccctccaaagttgatcactgtaaggcctagttggacaagtgaagatcatgactctccaaagtatagggagcatcacgattttagtggcagccctcttcgtaataaatttgaagggtttcaccttcaaggtagtcgaggatcaagtccgtataagtacaagaatgatggttatggccactccatgggttctcccaaggctggccatgtgaaggactatggggtcaacaacacatgggattcaccaccaagatcaaggttaactgatgacgattgggatggcaggagagatcatgatgattatggcaagccaaaattcaatggaggttacaagataactagtgctccacttagccaggccacaaatgatataggcaagatccttggggtaggtagtaaacctttggctcctcctacttatgcaccaaaatcacattttccagcatcttactcaactccacatataaaagaaagttaccctgagagaactcaaggtgaaaagcctctggcttcacctgtttcacccaatcatcctattatccaacgtcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="41741" stop="43201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42041" g_stop="42901" g_length="861"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="860" r_length="860" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E738188" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42041" e_stop="42901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAAGAACCAGTTATATTCTAAATAATAGTTATGGCTAGTTTTAGCAAGGGTGGAAGTTTTAACAGCTATAGTGACTACCCTGATCATGTTTGTCGCCCTGTGATTGTTGGACATAGTGTTGGGGGCTTCATGGTGAGAGCTCAAAGAGTTGTTGAAGTTCGTCGTAGTTATGGAATACCCCTGAATGGTCATGTAGATGAGTACGATGTGCATGAAGAATGGGACGATGATAGTCCAAGGAAAGTCAGTGACTTCTTCCATAAAGTTCATAATGAAGCTAGTCGACCAACTCATTCCACTCTTTTGAGCCCTCCAAAGTTGATCACTGTAAGGCCTAGTTGGACAAGTGAAGATCATGACTCTCCAAAGTATAGGGAGCATCACGATTTTAGTGGCAGCCCTCTTCGTAATAAATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTGTTTCAACCCAATCATCCTATTATCCAACGTCAAAT</genome_strand>
        <mrna_strand>CATAAAGAACCAGTTATATTCTAAATAATAGTTATGGCTAGTTTTAGCAAGGGTGGAAGTTTTAACAGCTATAGTGACTACCCTGATCATGTTTGTCGCCCTGTGATTGTTGGACATAGTGTTGGGGGCTTCATGGTGAGAGCTCAAAGAGTTGTTGAAGTTCGTCGTAGTTATGGAATACCCCTGAATGGTCATGTAGATGAGTACGATGTGCATGAAGAATGGGACGATGATAGTCCAAGGAAAGTCAGTGACTTCTTCCATAAAGTTCATAATGAAGCTAGTCGACCAACTCATTCCACTCTTTTGAGCCCTCCAAAGTTGATCACTGTAAGGCCTAGTTGGACAAGTGAAGATCATGACTCTCCAAAGTATAGGGAGCATCACGATTTTAGTGGCAGCCCTCTTCGTAATAAATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTGTTTC-ACCCAATCATCCTATTATCCAACGTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736786" ref_strand="+" ref_description="SGN-E736786 [LC07AG05]">
      <seq>ataaatttgaagggtttcaccttcaaggtagtcgaggatcaagtccgtataagtacaagaatgatggttatggccactccatgggttctcccaaggctggccatgtgaaggactatggggtcaacaacacatgggattcaccaccaagatcaaggttaactgatgacgattgggatggcaggagagatcatgatgattatggcaagccaaaattcaatggaggttacaagataactagtgctccacttagccaggccacaaatgatataggcaagatccttggggtaggtagtaaacctttggctcctcctacttatgcaccaaaatcacattttccagcatcttactcaactccacatataaaagaaagttaccctgagagaactcaaggtgaaaagcctctggcttcacctgtttcaacccaatcatcctattatccaacgtcaaatccgataaccgaaaggaaagaaagttaccctgaaccaacaaaaggaacgaagcctctgtcttaccctgtttatacaaaacaaccatactcaccaacttcaaactaccctgaaacaaatcagggaccaaggcctctgttttcccctggctacacgcaacaatcgcattcaccaacttcaaacccgatacctcaaaggaaagagaactaccctgaaacagcacacggcacaaagcctctgtttacccctggctatacacaacaatcacattcaccaacttcaaacccgatacctcaaaggaaagagaactatcctgaaacagaacatggcgtaaagccttcgttttcctctggttataaaccacaatttcattcaccaacttcaaacccaacacctcaaaggaaagaaagctatcctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="42153" stop="43618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42453" g_stop="43318" g_length="866"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="866" r_length="866" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E736786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42453" e_stop="43318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTGTTTCAACCCAATCATCCTATTATCCAACGTCAAATCCGATAACCGAAAGGAAAGAAAGTTACCCTGAACCAACAAAAGGAACGAAGCCTCTGTCTTACCCTGTTTATACAAAACAACCATACTCACCAACTTCAAACTACCCTGAAACAAATCAGGGACCAAGGCCTCTGTTTTCCCCTGGCTACACGCAACAATCGCATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTACCCTGAAACAGCACACGGCACAAAGCCTCTGTTTACCCCTGGCTATACACAACAATCACATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTATCCTGAAACAGAACATGGCGTAAAGCCTTCGTTTTCCTCTGGTTATAAACCACAATTTCATTCACCAACTTCAAACCCAACACCTCAAAGGAAAGAAAGCTATCCTGAA</genome_strand>
        <mrna_strand>ATAAATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTGTTTCAACCCAATCATCCTATTATCCAACGTCAAATCCGATAACCGAAAGGAAAGAAAGTTACCCTGAACCAACAAAAGGAACGAAGCCTCTGTCTTACCCTGTTTATACAAAACAACCATACTCACCAACTTCAAACTACCCTGAAACAAATCAGGGACCAAGGCCTCTGTTTTCCCCTGGCTACACGCAACAATCGCATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTACCCTGAAACAGCACACGGCACAAAGCCTCTGTTTACCCCTGGCTATACACAACAATCACATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTATCCTGAAACAGAACATGGCGTAAAGCCTTCGTTTTCCTCTGGTTATAAACCACAATTTCATTCACCAACTTCAAACCCAACACCTCAAAGGAAAGAAAGCTATCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739246" ref_strand="+" ref_description="SGN-E739246 [LC16CF09]">
      <seq>ctttatttgaagggtttcaccttcaaggtagtcgaggatcaagtccgtataagtacaagaatgatggttatggccactccatgggttctcccaaggctggccatgtgaaggactatggggtcaacaacacatgggattcaccaccaagatcaaggttaactgatgacgattgggatggcaggagagatcatgatgattatggcaagccaaaattcaatggaggttacaagataactagtgctccacttagccaggccacaaatgatataggcaagatccttggggtaggtagtaaacctttggctcctcctacttatgcaccaaaatcacattttccagcatcttactcaactccacatataaaagaaagttaccctgagagaactcaaggtgaaaagcctctggcttcacctgtttcaacccaatcatcctattatccaacgtcaaatccgataaccgaaaggaaagaaagttaccctgaaccaacaaaaggaacgaagcctctgtcttaccctgtttatacaaaacaaccatactcaccaacttcaaactaccctgaaacaaatcagggaccaaggcctctgttttcccctggctacacgcaacaatcgcattcaccaacttcaaacccgatacctcaaaggaaagagaactaccctgaaacagcacacggcacaaagcctctgtttacccctggctatacacaacaatcacattcaccaacttcaaacccgatacctcaaaggaaagagaactatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="42157" stop="43514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42453" g_stop="43214" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E739246" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42453" e_stop="43214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTGTTTCAACCCAATCATCCTATTATCCAACGTCAAATCCGATAACCGAAAGGAAAGAAAGTTACCCTGAACCAACAAAAGGAACGAAGCCTCTGTCTTACCCTGTTTATACAAAACAACCATACTCACCAACTTCAAACTACCCTGAAACAAATCAGGGACCAAGGCCTCTGTTTTCCCCTGGCTACACGCAACAATCGCATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTACCCTGAAACAGCACACGGCACAAAGCCTCTGTTTACCCCTGGCTATACACAACAATCACATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTATCCTG</genome_strand>
        <mrna_strand>CTTTATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTGTTTCAACCCAATCATCCTATTATCCAACGTCAAATCCGATAACCGAAAGGAAAGAAAGTTACCCTGAACCAACAAAAGGAACGAAGCCTCTGTCTTACCCTGTTTATACAAAACAACCATACTCACCAACTTCAAACTACCCTGAAACAAATCAGGGACCAAGGCCTCTGTTTTCCCCTGGCTACACGCAACAATCGCATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTACCCTGAAACAGCACACGGCACAAAGCCTCTGTTTACCCCTGGCTATACACAACAATCACATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330836" ref_strand="-" ref_description="SGN-E330836 [cTOD-10-H1]">
      <seq>agtttcatgatcagggtagctttgtttcatatcaggtgttgagtgtgatgttggagggtgtggttgttgcttagaaggagaggaaaacagagatgtccaaccttttttcttctttgggtgactttcgttgttttgagaggtcggattttcagttgattgttgtgtagaaacaggggaaaacatagggtttgtatcgtgtgttctttctgggtagctttctttcctttgaggtgttgggtttgaagttggtgaatgtgattgtggtttataaccagtggaaaacaaaggcttcacgctgtgttctttttcaggatagctttctttcctttgaggtgttgggtttgaagttggtgaatgtgattgtggtttataaccagtggaaaaccaaggctttacgccgtgttctgtttcaggatagctttctttcctttgaggtgttgggtttgaagttggtgaatgaaattgtggtttataaccagaggaaaacgaaggctttacgccatgttctgtttcaggatagttctctttcctttgaggtatcgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="44128" stop="42982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43828" g_stop="43518" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43517" i_stop="43416" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43415" g_stop="43180" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="547" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E330836" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330836" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43828" e_stop="43518"/>
          <exon e_start="43415" e_stop="43180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCATGATCAGGGTAGCTTTGTTTCATATCAGGTGTTGAGTGTGATGTTGGAGGGTGTGGTTGTTGCTTAGAAGGAGAGGAAAACAGAGATGTCCAACCTTTTTTCTTCTTTGGGTGACTTTCGTTGTTTTGAGAGGTCGGATTTTCAGTTGATTGTTGTGTAGAAACAGGGGAAAACATAGGGTTTGTATCGTGTGTTCTTTCTGGGTAGCTTTCTTTCCTTTGAGGTGTTGGGTTTGAAGTTGGTGAATGTGATTGTGGTTTATAACCAGTGGAAAACAAAGGCTTCACGCTGTGTTCTTTTTCAGGATAGCTTTCTTCCCTTTGAGGTGTTGGGTTTGAAGTTGGTGAATGTGATTGTGGTTTATAACCAGTGGAAAACAAAGGCTTCACGCTGTGTTCTTTTTCAGGATAGCTTTCTTTCCTTTGAGGTGTTGGGTTTGAAGTTGGTGAATGTGATTGTGGTTTATAACCAGTGGAAAACCAAGGCTTTACGCCGTGTTCTGTTTCAGGATAGCTTTCTTTCCTTTGAGGTGTTGGGTTTGAAGTTGGTGAATGAAATTGTGGTTTATAACCAGAGGAAAACGAAGGCTTTACGCCATGTTCTGTTTCAGGATAGTTCTCTTTCCTTTGAGGTATCGGGTTT</genome_strand>
        <mrna_strand>AGTTTCATGATCAGGGTAGCTTTGTTTCATATCAGGTGTTGAGTGTGATGTTGGAGGGTGTGGTTGTTGCTTAGAAGGAGAGGAAAACAGAGATGTCCAACCTTTTTTCTTCTTTGGGTGACTTTCGTTGTTTTGAGAGGTCGGATTTTCAGTTGATTGTTGTGTAGAAACAGGGGAAAACATAGGGTTTGTATCGTGTGTTCTTTCTGGGTAGCTTTCTTTCCTTTGAGGTGTTGGGTTTGAAGTTGGTGAATGTGATTGTGGTTTATAACCAGTGGAAAACAAAGGCTTCACGCTGTGTTCTTTTTCAG......................................................................................................GATAGCTTTCTTTCCTTTGAGGTGTTGGGTTTGAAGTTGGTGAATGTGATTGTGGTTTATAACCAGTGGAAAACCAAGGCTTTACGCCGTGTTCTGTTTCAGGATAGCTTTCTTTCCTTTGAGGTGTTGGGTTTGAAGTTGGTGAATGAAATTGTGGTTTATAACCAGAGGAAAACGAAGGCTTTACGCCATGTTCTGTTTCAGGATAGTTCTCTTTCCTTTGAGGTATCGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623981" ref_strand="+" ref_description="SGN-E623981 [89126]">
      <seq>gttcaatttaactattggcatgtctaatcaaattgctccaattgatccaaatgtcgatccttatggatacttgggcatcattcccaacactgatggctctatcacacgttcccaaattccacctcgtccattttccaccaccattcctgatcatgattcctccgtctttataaaagatctcgtcattaaccccgttaaagatacatgggctcgtattatcatccctcatgaagtactaaactctgaaaataaactccctcttgtagtatattttcatggtggaggatttgtaatggcaattactatagacacaccaattttacaaaaattttgtgcaacacttgcggttgaaattccagcgataattgtatcggtcgattatcgatacgcccccgaaaatcgactcccagcagcgtatgatgattgtgtggaatcgttgtattggatcaaaaatacccctaacgagttgttgaaaaaatatgctgatttttcaaagtgttttctattgggcactagttctggtggcaacatagcgtaccacgtaggactacgtgtagctggagttagtgaataccttaagcctttagaaatcaaagggttgattttatatcatagtctttttggtggaaatgaaaggacaaaatcggaattagattagctcgcgataagatgttgccccttaatgtgagtgatattatgtgggagctaggttacctattggtagcgatcgcgatcatccatattgtaatcccaatgggtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="47216" stop="48536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47516" g_stop="48236" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="763" r_length="721" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E623981" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47516" e_stop="48236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCAAATGTTGATCCTTATGGATACTTGGGAATTATTTTCAACACTGATGGCTCTATCACACGTTTCCAAATCCCACCTCGTCCATTTTTTACTACTATTCCTGATCATGATCCCTCTGTCTTTATAAAAGATCTTGTCATTAACCCTGTGAAAGACACGTGGGCTCGTATTATCATCCCTCGTGAAGTACTCAACTCGGAAAATAAACTACCTCTTGTAGTATATTTTCATGGTGGAGGATTTGTAATGGCAATTACTGTAAACACACCGATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCAATAATTGTATCGGTTGATTACCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACAACGTAGGACTACGTGTAGCTGGAGTTGGTGAAAATCTTAAGCCTTTAGAAATCAAAGGGTTAATTTTATATCATAGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGATTAGCTCACGATAAGATGCTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTAGGGTTGCCTATTGGTAGCGATCGCGATCATCCATATTGTAAT-CCGAT-GGTGGAG</genome_strand>
        <mrna_strand>TGATCCAAATGTCGATCCTTATGGATACTTGGGCATCATTCCCAACACTGATGGCTCTATCACACGTTCCCAAATTCCACCTCGTCCATTTTCCACCACCATTCCTGATCATGATTCCTCCGTCTTTATAAAAGATCTCGTCATTAACCCCGTTAAAGATACATGGGCTCGTATTATCATCCCTCATGAAGTACTAAACTCTGAAAATAAACTCCCTCTTGTAGTATATTTTCATGGTGGAGGATTTGTAATGGCAATTACTATAGACACACCAATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCGATAATTGTATCGGTCGATTATCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTGTATTGGATCAAAAATACCCCTAACGAGTTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACCACGTAGGACTACGTGTAGCTGGAGTTAGTGAATACCTTAAGCCTTTAGAAATCAAAGGGTTGATTTTATATCATAGTCTTTTTGGTGGAAATGAAAGGACAAAATCGGAATT-AGATTAGCTCGCGATAAGATGTTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTA-GGTTACCTATTGGTAGCGATCGCGATCATCCATATTGTAATCCCAATGGGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574121" ref_strand="+" ref_description="SGN-E574121 [33538]">
      <seq>aactattggcatgtctaatcaaattgctccaattgatccaaatgtcgatccttatggatacttgggcatcattcccaacactgatggctctatcacacgttcccaaattccacctcgtccattttccaccaccattcctgatcatgattcctccgtctttataaaagatctcgtcattaaccccgttaaagatacatgggctcgtattatcatccctcatgaagtactaaactctgaaaataaactccctcttgtagtatattttcatggtggaggatttgtaatggcaattactatagacacaccaattttacaaaaattttgtgcaacacttgcggttgaaattccagcgataattgtatcggtcgattatcgatacgcccccgaaaatcgactcccagcagcgtatgatgattgtgtggaatcgttgtattggatcaaaaatacccctaacgagttgttgaaaaaatatgctgatttttcaaagtgttttctattgggcactagttctggtggcaacatagcgtaccacgtaggactacgtgtagctggagttagtgaataaccttaagcccttttaaaatcaaagggttgattttatatcataagtctttttggtggaaatgaaaggacaaaatcggaaataaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="47216" stop="48428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47516" g_stop="48128" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="649" r_length="616" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E574121" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47516" e_stop="48128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCAAATGTTGATCCTTATGGATACTTGGGAATTATTTTCAACACTGATGGCTCTATCACACGTTTCCAAATCCCACCTCGTCCATTTTTTACTACTATTCCTGATCATGATCCCTCTGTCTTTATAAAAGATCTTGTCATTAACCCTGTGAAAGACACGTGGGCTCGTATTATCATCCCTCGTGAAGTACTCAACTCGGAAAATAAACTACCTCTTGTAGTATATTTTCATGGTGGAGGATTTGTAATGGCAATTACTGTAAACACACCGATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCAATAATTGTATCGGTTGATTACCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACAACGTAGGACTACGTGTAGCTGGAGTTGGTGAA-AATCTTAAG-CCTTTAGAAATCAAAGGGTTAATTTTATATCAT-AGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGA</genome_strand>
        <mrna_strand>TGATCCAAATGTCGATCCTTATGGATACTTGGGCATCATTCCCAACACTGATGGCTCTATCACACGTTCCCAAATTCCACCTCGTCCATTTTCCACCACCATTCCTGATCATGATTCCTCCGTCTTTATAAAAGATCTCGTCATTAACCCCGTTAAAGATACATGGGCTCGTATTATCATCCCTCATGAAGTACTAAACTCTGAAAATAAACTCCCTCTTGTAGTATATTTTCATGGTGGAGGATTTGTAATGGCAATTACTATAGACACACCAATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCGATAATTGTATCGGTCGATTATCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTGTATTGGATCAAAAATACCCCTAACGAGTTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACCACGTAGGACTACGTGTAGCTGGAGTTAGTGAATAACCTTAAGCCCTTTTAAAATCAAAGGGTTGATTTTATATCATAAGTCTTTTTGGTGGAAATGAAAGGACAAAATCGGAAATAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548915" ref_strand="+" ref_description="SGN-E548915 [TUS-65-J13]">
      <seq>attttcatggtggaggatttgtaatggcaattactgtaaacacaccgattttacaaaaattttgtgcaacacttgcggttgaaattccagcaataattgtatcggttgattaccgatacgcccccgaaaatcgactcccagcagcgtatgatgattgtgtggaatcgttatattggatcaaaaatacccctaacgagctgttgaaaaaatatgctgatttttcaaagtgttttctattgggcactagttctggtggcaacatagcgtacaacgtaggactacgtgtagctggagttggtgaaaatcttaagcctttagaaatcaaagggttaattttatatcatagtctttttggtggaaatgagaggacaaaatcggaattaagattagctcacgataagatgctgccccttaatgtgagtgatattatgtgggagctagggttgcctattggtagcgatcgcgatcatccatattgtaatccgatggtggagattcgatcaaatgaaaatttgtttgatcaagtgaaaatacaaggttggaagattctgatcattgactgtgatggtgatcctttggtcgatcgacagattgagttttcaaagatgttgaaggcaaaaggtgtgcaagttgtggattgttttagtgaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="47443" stop="48695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47743" g_stop="48395" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E548915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47743" e_stop="48395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCATGGTGGAGGATTTGTAATGGCAATTACTGTAAACACACCGATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCAATAATTGTATCGGTTGATTACCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACAACGTAGGACTACGTGTAGCTGGAGTTGGTGAAAATCTTAAGCCTTTAGAAATCAAAGGGTTAATTTTATATCATAGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGATTAGCTCACGATAAGATGCTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTAGGGTTGCCTATTGGTAGCGATCGCGATCATCCATATTGTAATCCGATGGTGGAGATTCGATCAAATGAAAATTTGTTTGATCAAGTGAAAATACAAGGTTGGAAGATTCTGATCATTGACTGTGATGGTGATCCTTTGGTCGATCGACAGATTGAGTTTTCAAAGATGTTGAAGGCAAAAGGTGTGCAAGTTGTGGATTGTTTTAGTGAAGGA</genome_strand>
        <mrna_strand>ATTTTCATGGTGGAGGATTTGTAATGGCAATTACTGTAAACACACCGATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCAATAATTGTATCGGTTGATTACCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACAACGTAGGACTACGTGTAGCTGGAGTTGGTGAAAATCTTAAGCCTTTAGAAATCAAAGGGTTAATTTTATATCATAGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGATTAGCTCACGATAAGATGCTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTAGGGTTGCCTATTGGTAGCGATCGCGATCATCCATATTGTAATCCGATGGTGGAGATTCGATCAAATGAAAATTTGTTTGATCAAGTGAAAATACAAGGTTGGAAGATTCTGATCATTGACTGTGATGGTGATCCTTTGGTCGATCGACAGATTGAGTTTTCAAAGATGTTGAAGGCAAAAGGTGTGCAAGTTGTGGATTGTTTTAGTGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304692" ref_strand="+" ref_description="SGN-E304692 [cLEX-11-O10]">
      <seq>ttttcatggtggaagatttgtaatggcaattactgtaaacacaccgattttacaaaaattttgtgcaacacttgcggttgaaattccagcaataattgtatcggttgattaccgatacgcccccgaaaatcgactcccagcagcgtatgatgattgtgtggaatcgttatattggatcaaaaatacccctaacgagctgttgaaaaaatatgctgatttttcaaagtgttttctattgggcactagttctggtggcaacatagcgtacaacgtaagactacgtgtagctggagttggtgaaaatcttaagcctttagaaatcaaagggttaattttatatcatagtctttttggtggaaatgagaggacaaaatcggaattaagattagctcacgataagatgctgccccttaatgtgagtgatattatgtgggagctaaggttgcctattggtagcgatcgcgatcatccatattgtaatccgatggtggagattcgatcaaatgaaaatttgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="47444" stop="48563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47744" g_stop="48263" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E304692" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47744" e_stop="48263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATGGTGGAGGATTTGTAATGGCAATTACTGTAAACACACCGATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCAATAATTGTATCGGTTGATTACCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACAACGTAGGACTACGTGTAGCTGGAGTTGGTGAAAATCTTAAGCCTTTAGAAATCAAAGGGTTAATTTTATATCATAGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGATTAGCTCACGATAAGATGCTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTAGGGTTGCCTATTGGTAGCGATCGCGATCATCCATATTGTAATCCGATGGTGGAGATTCGATCAAATGAAAATTTGTTTGAT</genome_strand>
        <mrna_strand>TTTTCATGGTGGAAGATTTGTAATGGCAATTACTGTAAACACACCGATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCAATAATTGTATCGGTTGATTACCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACAACGTAAGACTACGTGTAGCTGGAGTTGGTGAAAATCTTAAGCCTTTAGAAATCAAAGGGTTAATTTTATATCATAGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGATTAGCTCACGATAAGATGCTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTAAGGTTGCCTATTGGTAGCGATCGCGATCATCCATATTGTAATCCGATGGTGGAGATTCGATCAAATGAAAATTTGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543662" ref_strand="+" ref_description="SGN-E543662 [TUS-65-J13](-)">
      <seq>agaaatcaaaggggttaattttatatcatagtctttttggtggaaatgagaggacaaaatcggaattaagattagctcacgataagatgctgccccttaatgtgagtgatattatgtgggagctagggttgcctattggtagcgatcgcgatcatccatattgtaatccgatggtggagattcgatcaaatgaaaatttgtttgatcaagtgaaaatacaaggttggaagattctgatcattgactgtgatggtgatcctttggtcgatcgacagattgagttttcaaagatgttgaaggcaaaaggtgtgcaagttgtggattgttttagtgaaggaggatttcatggttgtgagtattttgatggcatgaagttgaaggaattgccccttgttgtaaaggaatttatgagaagtaattaattaaagtacttgtggcaagtgatctttaatttgaaagaaatatttgtaacaattatgaaaataggagtcccctctcagagctatactttgagataaaagaagaagccctgtttagatttcgagttctacagtttcaaaataagttgtgaagtatcgtccatatatatatctcaaaatgtactatttagagcgagatataccctttgtttaaaaagtgaagccaaatatatccttgttctacttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="47759" stop="49026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48059" g_stop="48725" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="706"/>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E543662" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48059" e_stop="48725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCAAA-GGGTTAATTTTATATCATAGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGATTAGCTCACGATAAGATGCTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTAGGGTTGCCTATTGGTAGCGATCGCGATCATCCATATTGTAATCCGATGGTGGAGATTCGATCAAATGAAAATTTGTTTGATCAAGTGAAAATACAAGGTTGGAAGATTCTGATCATTGACTGTGATGGTGATCCTTTGGTCGATCGACAGATTGAGTTTTCAAAGATGTTGAAGGCAAAAGGTGTGCAAGTTGTGGATTGTTTTAGTGAAGGAGGATTTCATGGTTGTGAGTATTTTGATGGCATGAAGTTGAAGGAATTGACCCTTGTTGTAAAGGAATTTATGAGAAGTAATTAATTAAAGTACTTGTGGCAAGTGATCTTTAATTTGAAAGAAATATTTGTAACAATTATGAAAATAGGAGTCCACTCTCAGAGCTATACTCTGAGATAAAAGAAGAAGCACTGTTTAGATTTCGAGTTCTACAGTTTC-AAATAAGTTGTGAAGTATCGT-CATATATATATCTC-AAATGTACTACTTAGAGC-AGATATACCCTTTGTTTAAAAAGTGAAG-CAAATATATCCTTGTTCTACTTGTACATAA</genome_strand>
        <mrna_strand>AGAAATCAAAGGGGTTAATTTTATATCATAGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGATTAGCTCACGATAAGATGCTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTAGGGTTGCCTATTGGTAGCGATCGCGATCATCCATATTGTAATCCGATGGTGGAGATTCGATCAAATGAAAATTTGTTTGATCAAGTGAAAATACAAGGTTGGAAGATTCTGATCATTGACTGTGATGGTGATCCTTTGGTCGATCGACAGATTGAGTTTTCAAAGATGTTGAAGGCAAAAGGTGTGCAAGTTGTGGATTGTTTTAGTGAAGGAGGATTTCATGGTTGTGAGTATTTTGATGGCATGAAGTTGAAGGAATTGCCCCTTGTTGTAAAGGAATTTATGAGAAGTAATTAATTAAAGTACTTGTGGCAAGTGATCTTTAATTTGAAAGAAATATTTGTAACAATTATGAAAATAGGAGTCCCCTCTCAGAGCTATACTTTGAGATAAAAGAAGAAGCCCTGTTTAGATTTCGAGTTCTACAGTTTCAAAATAAGTTGTGAAGTATCGTCCATATATATATCTCAAAATGTACTATTTAGAGCGAGATATACCCTTTGTTTAAAAAGTGAAGCCAAATATATCCTTGTTCTACTTGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428754" ref_strand="+" ref_description="SGN-E428754 [STM-50-J24]">
      <seq>ccaacaaaccccaatgcttttctcaactttacaacaaaagaaaagtatttttgttaaactgattgatcaaaagttctttacatggtgtaaatacattctaattgttgtatatctaacaacaggtttaaaaatattagcaacaaaaacttgaaaacaacaatgtaagctacagctaaaaatatcaaaatatctcttttctcagcaccaattatccccgcacaagcatttaccatttacaaaatgatgaaaacctgaagtgtctcttacgtgtatatctctcttggtgacaacagaaacatatttgaagaatgtatggcagtcaccacagagaagcacattcttcataacgcgaacaggttttccaggtctcgtcataagaagcccaaaggttacagatagttttgcactgtggtagaacaagaagtctttcttctgatgctcctccacttcatggagcacaagacttgtatcaggtacatatccagctttcagacactccaaaataagtatttgtaagccactgtatatgtcttttgactgtgaatgcaatttgtctctagcaaagaaggagtgaaccttgtccccgaatatgatccaactgcgtcctggtatttttcggatacccttctccctcatttctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="48535" stop="49766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48821" g_stop="49466" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-E428754" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48821" e_stop="49466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCAAAGTCTTGTGCTTTTCTCAAACTTTATAGACCAGAGAAAAGAATTTTTGTTAAACTGATTGATCAAAAGTTCTTTACATGGTGTAAATACATTCTAATTGTTGTATATCTAACAACAGGTTTAAAAATATTAGCTACAAAAATCTTGAAAACAACAATGTAAGACTACAGCTAAAAATATCAAAATATCTCTTTTCTCAGCACCAATTATCCCCGCACGAGCATTTACCATTTACAAAATGATGAAAACCTGAAGCGTCTCTTACGTGTATATCTCTCTTGGTGATAACAGAAACATATTTGAAGAATGTATGGCAGTCACCACAGAGAAGCACATTCTTCATAACGCGAACAGGTTTTCCAGGTCTAGTCATAAGAAGCCCAAAGGTTACAGATAGTTTTGCACTGTGGTAGAACAAGAAGTCTTTCTTCTGATGCTCCTCTACTTCATGAAGCACAAGACTTGTATCAGGTACATATCCAGCTTTCAGACACTCCAAAATAAGTATTTGTAAGCCACTGTATATGTCTTTTGACTGTGAATGCAATTTGTCTCTAGCAAAGAAGGAGTGAACCTTGTCGCCAAATATGATCCAGCTGCGTCCTGGTATTTTT-GGATACCCTTCTCCCTCATCTCCGCC</genome_strand>
        <mrna_strand>CCAACAAACCCCAATGCTTTTCTCAA-CTTTACA-ACAAAAGAAAAGTATTTTTGTTAAACTGATTGATCAAAAGTTCTTTACATGGTGTAAATACATTCTAATTGTTGTATATCTAACAACAGGTTTAAAAATATTAGCAACAAAAA-CTTGAAAACAACAATGTAAG-CTACAGCTAAAAATATCAAAATATCTCTTTTCTCAGCACCAATTATCCCCGCACAAGCATTTACCATTTACAAAATGATGAAAACCTGAAGTGTCTCTTACGTGTATATCTCTCTTGGTGACAACAGAAACATATTTGAAGAATGTATGGCAGTCACCACAGAGAAGCACATTCTTCATAACGCGAACAGGTTTTCCAGGTCTCGTCATAAGAAGCCCAAAGGTTACAGATAGTTTTGCACTGTGGTAGAACAAGAAGTCTTTCTTCTGATGCTCCTCCACTTCATGGAGCACAAGACTTGTATCAGGTACATATCCAGCTTTCAGACACTCCAAAATAAGTATTTGTAAGCCACTGTATATGTCTTTTGACTGTGAATGCAATTTGTCTCTAGCAAAGAAGGAGTGAACCTTGTCCCCGAATATGATCCAACTGCGTCCTGGTATTTTTCGGATACCCTTCTCCCTCATTTCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739101" ref_strand="+" ref_description="SGN-E739101 [LC16AE06]">
      <seq>ctgtccttgtgatatcagcttatagacacacttccacaaatttagttgattgttgccaaaagttcttttcctctatgcaatcctcatataacgtaaaccccacctcggagcattatgcaggttttgtaggtgtcttaggctattggggtctgctcgaagaagcagaaaagataattaatgcaatgccgtttgaaccaaaggcttctgtttggcatgctttgcttgatggttgtaggttacatgtgaatgctatcattggaaaaagggccatgaagaatatactttccattgtcccacaggatccttctactttcatactaaagtcaaatctttactcagcatctggaagatggcagtgttcggaacttgttagggcggagatgagggagaagggtatccaaaaaataccaggacgcagctggatcatatttggcgacaaggttcactccttctttgctagagacaaattgcattcacagtcaaaagacatatacagtggcttacaaatacttattttggagtgtctgaaagctggatatgtacctgatacaagtcttgtgcttcatgaagtagaggagcatcagaagaaagacttcttgttctaccacagtgcaaaactatctgtaacctttgggcttcttatgactagacctggaaaacctgttcgcgttatgaagaatgtgcttctctgtggtgactgccatacattcttcaaatatgtttctgttatcaccaagagagatatacacgtaagagacgcttcaggttttcatcattttgtaaatggtaaatgctcgtgcggggataattggtgctgagaaaagagatattttgatatttttagctgtagtcttacattgttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="50138" stop="48676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49839" g_stop="48976" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="865" r_length="865" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E739101" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49839" e_stop="48976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCCTTGTGATATCAGCTTATAGACACACTTCCACAAATTTAGTTGATTGTTGCCAAAAGTTCTTTTCCTCTATGCAATCCTCATATAACGTAAACCCCACCTCGGAGCATTATGCAGGTTTTGTAGGTGTCTTAGGCTATTGGGGTCTGCTCGAAGAAGCAGAAAAGATAATTAATGCAATGCCGTTTGAACCAAAGGCTTCTGTTTGGCATGCTTTGCTTGATGGTTGTAGGTTACATGTGAATGCTATCATTGGAAAAAGGGCCATGAAGAATATACTTTCCATTGTCCCACAGGATCCTTCTACTTTCATACTAAAGTCAAATCTTTACTCAGCATCTGGAAGATGGCAGTGTTCGGAACTTGTTAGGGCGGAGATGAGGGAGAAGGGTATCC-AAAAATACCAGGACGCAGCTGGATCATATTTGGCGACAAGGTTCACTCCTTCTTTGCTAGAGACAAATTGCATTCACAGTCAAAAGACATATACAGTGGCTTACAAATACTTATTTTGGAGTGTCTGAAAGCTGGATATGTACCTGATACAAGTCTTGTGCTTCATGAAGTAGAGGAGCATCAGAAGAAAGACTTCTTGTTCTACCACAGTGCAAAACTATCTGTAACCTTTGGGCTTCTTATGACTAGACCTGGAAAACCTGTTCGCGTTATGAAGAATGTGCTTCTCTGTGGTGACTGCCATACATTCTTCAAATATGTTTCTGTTATCACCAAGAGAGATATACACGTAAGAGACGCTTCAGGTTTTCATCATTTTGTAAATGGTAAATGCTCGTGCGGGGATAATTGGTGCTGAGAAAAGAGATATTTTGATATTTTTAGCTGTAGTCTTACATTGTTGTT</genome_strand>
        <mrna_strand>CTGTCCTTGTGATATCAGCTTATAGACACACTTCCACAAATTTAGTTGATTGTTGCCAAAAGTTCTTTTCCTCTATGCAATCCTCATATAACGTAAACCCCACCTCGGAGCATTATGCAGGTTTTGTAGGTGTCTTAGGCTATTGGGGTCTGCTCGAAGAAGCAGAAAAGATAATTAATGCAATGCCGTTTGAACCAAAGGCTTCTGTTTGGCATGCTTTGCTTGATGGTTGTAGGTTACATGTGAATGCTATCATTGGAAAAAGGGCCATGAAGAATATACTTTCCATTGTCCCACAGGATCCTTCTACTTTCATACTAAAGTCAAATCTTTACTCAGCATCTGGAAGATGGCAGTGTTCGGAACTTGTTAGGGCGGAGATGAGGGAGAAGGGTATCCAAAAAATACCAGGACGCAGCTGGATCATATTTGGCGACAAGGTTCACTCCTTCTTTGCTAGAGACAAATTGCATTCACAGTCAAAAGACATATACAGTGGCTTACAAATACTTATTTTGGAGTGTCTGAAAGCTGGATATGTACCTGATACAAGTCTTGTGCTTCATGAAGTAGAGGAGCATCAGAAGAAAGACTTCTTGTTCTACCACAGTGCAAAACTATCTGTAACCTTTGGGCTTCTTATGACTAGACCTGGAAAACCTGTTCGCGTTATGAAGAATGTGCTTCTCTGTGGTGACTGCCATACATTCTTCAAATATGTTTCTGTTATCACCAAGAGAGATATACACGTAAGAGACGCTTCAGGTTTTCATCATTTTGTAAATGGTAAATGCTCGTGCGGGGATAATTGGTGCTGAGAAAAGAGATATTTTGATATTTTTAGCTGTAGTCTTACATTGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737649" ref_strand="+" ref_description="SGN-E737649 [LC10CG12]">
      <seq>gtgtccttgtgatatcagcttatagacacacttccacaaatttagttgattgttgccaaaagttcttttcctctatgcaatcctcatataacgtaaaccccacctcggagcattatgcaggttttgtaggtgtcttaggctattggggtctgctcgaagaagcagaaaagataattaatgcaatgccgtttgaaccaaaggcttctgtttggcatgctttgcttgatggttgtaggttacatgtgaatgctatcattggaaaaagggccatgaagaatatactttccattgtcccacaggatccttctactttcatactaaagtcaaatctttactcagcatctggaagatggcagtgttcggaacttgttagggcggagatgagggagaagggtatccaaaaaataccaggacgcagctggatcatatttggcgacaaggttcactccttctttgctagagacaaattgcattcacagtcaaaagacatatacagtggcttacaaatacttattttggagtgtctgaaagctggatatgtacctgatacaagtcttgtgcttcatgaagtagaggagcatcagaagaaagacttcttgttctaccacagtgcaaaactatctgtaacctttgggcttcttatgactagacctggaaaacctgttcgcgttatgaagaaatgtgcttctctgtggtgactgccatacatttcttcaaatatgtttctgttatccccaagagagatatacacgtaagagacgcttcaggttttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="50139" stop="48767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49839" g_stop="49067" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E737649" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49839" e_stop="49067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCCTTGTGATATCAGCTTATAGACACACTTCCACAAATTTAGTTGATTGTTGCCAAAAGTTCTTTTCCTCTATGCAATCCTCATATAACGTAAACCCCACCTCGGAGCATTATGCAGGTTTTGTAGGTGTCTTAGGCTATTGGGGTCTGCTCGAAGAAGCAGAAAAGATAATTAATGCAATGCCGTTTGAACCAAAGGCTTCTGTTTGGCATGCTTTGCTTGATGGTTGTAGGTTACATGTGAATGCTATCATTGGAAAAAGGGCCATGAAGAATATACTTTCCATTGTCCCACAGGATCCTTCTACTTTCATACTAAAGTCAAATCTTTACTCAGCATCTGGAAGATGGCAGTGTTCGGAACTTGTTAGGGCGGAGATGAGGGAGAAGGGTATCC-AAAAATACCAGGACGCAGCTGGATCATATTTGGCGACAAGGTTCACTCCTTCTTTGCTAGAGACAAATTGCATTCACAGTCAAAAGACATATACAGTGGCTTACAAATACTTATTTTGGAGTGTCTGAAAGCTGGATATGTACCTGATACAAGTCTTGTGCTTCATGAAGTAGAGGAGCATCAGAAGAAAGACTTCTTGTTCTACCACAGTGCAAAACTATCTGTAACCTTTGGGCTTCTTATGACTAGACCTGGAAAACCTGTTCGCGTTATGAAG-AATGTGCTTCTCTGTGGTGACTGCCATACA-TTCTTCAAATATGTTTCTGTTATCACCAAGAGAGATATACACGTAAGAGACGCTTCAGGTTTTCATC</genome_strand>
        <mrna_strand>GTGTCCTTGTGATATCAGCTTATAGACACACTTCCACAAATTTAGTTGATTGTTGCCAAAAGTTCTTTTCCTCTATGCAATCCTCATATAACGTAAACCCCACCTCGGAGCATTATGCAGGTTTTGTAGGTGTCTTAGGCTATTGGGGTCTGCTCGAAGAAGCAGAAAAGATAATTAATGCAATGCCGTTTGAACCAAAGGCTTCTGTTTGGCATGCTTTGCTTGATGGTTGTAGGTTACATGTGAATGCTATCATTGGAAAAAGGGCCATGAAGAATATACTTTCCATTGTCCCACAGGATCCTTCTACTTTCATACTAAAGTCAAATCTTTACTCAGCATCTGGAAGATGGCAGTGTTCGGAACTTGTTAGGGCGGAGATGAGGGAGAAGGGTATCCAAAAAATACCAGGACGCAGCTGGATCATATTTGGCGACAAGGTTCACTCCTTCTTTGCTAGAGACAAATTGCATTCACAGTCAAAAGACATATACAGTGGCTTACAAATACTTATTTTGGAGTGTCTGAAAGCTGGATATGTACCTGATACAAGTCTTGTGCTTCATGAAGTAGAGGAGCATCAGAAGAAAGACTTCTTGTTCTACCACAGTGCAAAACTATCTGTAACCTTTGGGCTTCTTATGACTAGACCTGGAAAACCTGTTCGCGTTATGAAGAAATGTGCTTCTCTGTGGTGACTGCCATACATTTCTTCAAATATGTTTCTGTTATCCCCAAGAGAGATATACACGTAAGAGACGCTTCAGGTTTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428753" ref_strand="+" ref_description="SGN-E428753 [STM-50-J24]">
      <seq>cttcacaggtatgctcttaaaaatggattacatggtaatttgagtgtgaataatgcacttataggattttacactaagtgtggaaccttgaagaatgtagtggatgtgtttgagaggatgcctgtgaaggatgtctttagttggactgaaatgattgtagcttatatggaatttggacacgttgatttggcgatggagatttttaacagcatgcctgagagaaattctgtttcttataatgctcttttggctggatttagtcaaaatcatgaagggtttaaggcactggcgttgttttgtagaatgttggagggaggaatggagttgactgattttgcattgaccagtgttcttaatgcttgtggttcaatgatggagaggaagataagcgaacagattcatgcgtttatcctcaagtgtggtttaaaattaaatgatcatattgagacgtcattggttgatatgtgcacgcggtgtgggagaatggatgatgctgaaaagatatttcatgatctgccacttgaccatgataattcaattgcattgacatcaatgatatgtgcatatgctagaaatggacaaccagaagaagctatttctctgttcttggtaagacattcagaaaaatcgctagttgttgatgaagttggattggccactattcttggtgtttgtggaacattagggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="51094" stop="49804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50794" g_stop="50104" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E428753" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50794" e_stop="50104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACAGGCATGCTCTTAAACGAGGATTTCATGGCAATTTGAGTGTGAATAATGCACTTATAGGCTTTTACACTAAGTGTGGAACCTTGAAGAATGTAGTGGATGTGTTTGAGAGGATGCCTGTAAAGGATGTCTTTAGTTGGACTGAAATGATTGTGGCATATATGGAATTTGGGCACGTTGATTTGGCGATGGAGATTTTTAACAGTATGCCTGAGAGAAATTCTGTTTCTTATAATGCTCTTTTGGCTGGATTTAGTCAAAATCATGAAGGGTTTAAGGCACTGGCGTTGTTTTGTAGAATGTTGGAGGGAGGAATGGAGTTGACAGATTTTACATTGACCAGTGTTGTTAATGCTTGTGGTTCAGTGATGGAGAGGAAGATAAGCGAACAGATTCATGCGTTTATCCTCAAGTGTGGTTTAAAATCAAATGATCGTATTGAGACGTCATTGATTGATATGTGCACGCGGTGTGGGAGAATGGATGATGCTGAAAAGCTATTTGATGATCTGCCACTTGATCATGATAATTCAATTGCACTGACATCAATGATATGTGCATATGCTAGAAATGGACAACCAGAAGAAGCTATTTCTCTGTTCTTGGTTAGACATTCAGAAAAATCACTAGTTGTTGATGAAGTTGCATTGGCCACTATTCTCGGTGTTTGTGGAACACTAGGGATTC</genome_strand>
        <mrna_strand>CTTCACAGGTATGCTCTTAAAAATGGATTACATGGTAATTTGAGTGTGAATAATGCACTTATAGGATTTTACACTAAGTGTGGAACCTTGAAGAATGTAGTGGATGTGTTTGAGAGGATGCCTGTGAAGGATGTCTTTAGTTGGACTGAAATGATTGTAGCTTATATGGAATTTGGACACGTTGATTTGGCGATGGAGATTTTTAACAGCATGCCTGAGAGAAATTCTGTTTCTTATAATGCTCTTTTGGCTGGATTTAGTCAAAATCATGAAGGGTTTAAGGCACTGGCGTTGTTTTGTAGAATGTTGGAGGGAGGAATGGAGTTGACTGATTTTGCATTGACCAGTGTTCTTAATGCTTGTGGTTCAATGATGGAGAGGAAGATAAGCGAACAGATTCATGCGTTTATCCTCAAGTGTGGTTTAAAATTAAATGATCATATTGAGACGTCATTGGTTGATATGTGCACGCGGTGTGGGAGAATGGATGATGCTGAAAAGATATTTCATGATCTGCCACTTGACCATGATAATTCAATTGCATTGACATCAATGATATGTGCATATGCTAGAAATGGACAACCAGAAGAAGCTATTTCTCTGTTCTTGGTAAGACATTCAGAAAAATCGCTAGTTGTTGATGAAGTTGGATTGGCCACTATTCTTGGTGTTTGTGGAACATTAGGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481015" ref_strand="+" ref_description="SGN-E481015 [cSTD-16-K15]">
      <seq>cttcacaggtatgctcttaaaaatggattacatggtaatttgagtgtgaataatgcacttataggattttacactaagtgtggaaccttgaagaatgtagtggatgtgtttgagaggatgcctgtgaaggatgtctttagttggactgaaatgattgtagcttatatggaatttggacacgttgatttggcgatggagatttttaacagcatgcctgagagaaattctgtttcttataatgctcttttggctggatttagtcaaaatcatgaagggtttaaggcactggcgttgttttgtagaatgttggagggaggaatggagttgactgattttgcattgaccagtgttcttaatgcttgtggttcaatgatggagaggaagataagcgaacagattcatgcgtttatcctcaagtgtggtttaaaattaaatgatcatattgagacgtcattggttgatatgtgcacgcggtgtgggagaatggatgatgctgaaaagatatttcatgatctgccacttgaccatgataattcaattgcattgacatcaatgatatgtgcatatgctagaaatggacaaccagaagaagctatttctctgttcttggtaagacattcagaaaaatcgctagttgttgatgaagttggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="51094" stop="49841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50794" g_stop="50141" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E481015" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50794" e_stop="50141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACAGGCATGCTCTTAAACGAGGATTTCATGGCAATTTGAGTGTGAATAATGCACTTATAGGCTTTTACACTAAGTGTGGAACCTTGAAGAATGTAGTGGATGTGTTTGAGAGGATGCCTGTAAAGGATGTCTTTAGTTGGACTGAAATGATTGTGGCATATATGGAATTTGGGCACGTTGATTTGGCGATGGAGATTTTTAACAGTATGCCTGAGAGAAATTCTGTTTCTTATAATGCTCTTTTGGCTGGATTTAGTCAAAATCATGAAGGGTTTAAGGCACTGGCGTTGTTTTGTAGAATGTTGGAGGGAGGAATGGAGTTGACAGATTTTACATTGACCAGTGTTGTTAATGCTTGTGGTTCAGTGATGGAGAGGAAGATAAGCGAACAGATTCATGCGTTTATCCTCAAGTGTGGTTTAAAATCAAATGATCGTATTGAGACGTCATTGATTGATATGTGCACGCGGTGTGGGAGAATGGATGATGCTGAAAAGCTATTTGATGATCTGCCACTTGATCATGATAATTCAATTGCACTGACATCAATGATATGTGCATATGCTAGAAATGGACAACCAGAAGAAGCTATTTCTCTGTTCTTGGTTAGACATTCAGAAAAATCACTAGTTGTTGATGAAGTTGCATTG</genome_strand>
        <mrna_strand>CTTCACAGGTATGCTCTTAAAAATGGATTACATGGTAATTTGAGTGTGAATAATGCACTTATAGGATTTTACACTAAGTGTGGAACCTTGAAGAATGTAGTGGATGTGTTTGAGAGGATGCCTGTGAAGGATGTCTTTAGTTGGACTGAAATGATTGTAGCTTATATGGAATTTGGACACGTTGATTTGGCGATGGAGATTTTTAACAGCATGCCTGAGAGAAATTCTGTTTCTTATAATGCTCTTTTGGCTGGATTTAGTCAAAATCATGAAGGGTTTAAGGCACTGGCGTTGTTTTGTAGAATGTTGGAGGGAGGAATGGAGTTGACTGATTTTGCATTGACCAGTGTTCTTAATGCTTGTGGTTCAATGATGGAGAGGAAGATAAGCGAACAGATTCATGCGTTTATCCTCAAGTGTGGTTTAAAATTAAATGATCATATTGAGACGTCATTGGTTGATATGTGCACGCGGTGTGGGAGAATGGATGATGCTGAAAAGATATTTCATGATCTGCCACTTGACCATGATAATTCAATTGCATTGACATCAATGATATGTGCATATGCTAGAAATGGACAACCAGAAGAAGCTATTTCTCTGTTCTTGGTAAGACATTCAGAAAAATCGCTAGTTGTTGATGAAGTTGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224850" ref_strand="+" ref_description="SGN-E224850 [cLEL-27-O13](-)">
      <seq>tttgaagcattttgttattaatgcatcttccagagaagggtttatagtaatgcccagagcgaagcattgctttccttttccatttccaaatatagaagggtccttctggtttttgacttctcaatttgttgtggtggcgtgaagctccccagttacatgtatattagtactaccagagttaattctttgtgatggtatgttcgacttctgcagttggtagaaaattttacatctatatttgaccggtgtaattgcatctcctctatcttactcaacgacattatgcataattctgcttgttcgttgatggttgaaaaaggatgtcacccattacacagttcttacagcatcatctcgcgacaatgattctataatcccaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="53097" stop="52121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52797" g_stop="52421" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="396"/>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E224850" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52797" e_stop="52421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGCATTTTGTTATTAATGCATCTTCCAGAGAAGGGTTTATAGTAATGCCCAGAGCGAAGCATTGCTTTCCTTTTCCATTTCCAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGCGTGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTTACATCTATATTTGACCGGTGTAATTGCATCTCCTCTATCTTACTCATCGACATTTTGTATAATTCTGCTTGTTCATTGATGGTTGAAAAAGGATAACACCTATTATACAGTTCTTACAGCATGAAATGGGAAGATTGATTCTATGATCC</genome_strand>
        <mrna_strand>TTTGAAGCATTTTGTTATTAATGCATCTTCCAGAGAAGGGTTTATAGTAATGCCCAGAGCGAAGCATTGCTTTCCTTTTCCATTTCCAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGCGTGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTTACATCTATATTTGACCGGTGTAATTGCATCTCCTCTATCTTACTCAACGACATTATGCATAATTCTGCTTGTTCGTTGATGGTTGAAAAAGGATGTCACCCATTACACAGTTCTTACAGCATCATCTCGCGACAATGATTCTATAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224494" ref_strand="+" ref_description="SGN-E224494 [cLEL-27-O13](-)">
      <seq>attaaaagtggggggctggccatggcaacactttgaagcattttgttattaatgcatcttccagagaagggtttatagtaatgcccagagcgaagcattgctttccttttccatttccaaatatagaagggtccttctggtttttgacttctcaatttgttgtggtggcgtgaagctccccagttacatgtatattagtactaccagagttaattctttgtgatggtatgttcgacttctgcagttggtagaaaattttacatctatatttgcccggtgtaattgcatctcctctatcttactcatcgacattttgtataattctgcttgttcattcatggttgaaaaaggataacacctattatacagttctttcagcatcccccgggaagatttatactatgccccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="53128" stop="52148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52828" g_stop="52425" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="427"/>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E224494" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52828" e_stop="52425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAAGTGGGGGGCTGGCCATGGCAACACTTTGAAGCATTTTGTTATTAATGCATCTTCCAGAGAAGGGTTTATAGTAATGCCCAGAGCGAAGCATTGCTTTCCTTTTCCATTTCCAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGCGTGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTTACATCTATATTTGACCGGTGTAATTGCATCTCCTCTATCTTACTCATCGACATTTTGTATAATTCTGCTTGTTCATTGATGGTTGAAAAAGGATAACACCTATTATACAGTTCTTACAGCATGAAATGGGAAGATTGATTCTATG</genome_strand>
        <mrna_strand>ATTAAAAGTGGGGGGCTGGCCATGGCAACACTTTGAAGCATTTTGTTATTAATGCATCTTCCAGAGAAGGGTTTATAGTAATGCCCAGAGCGAAGCATTGCTTTCCTTTTCCATTTCCAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGCGTGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTTACATCTATATTTGCCCGGTGTAATTGCATCTCCTCTATCTTACTCATCGACATTTTGTATAATTCTGCTTGTTCATTCATGGTTGAAAAAGGATAACACCTATTATACAGTTCTTTCAGCATCCCCCGGGAAGATTTATACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594233" ref_strand="+" ref_description="SGN-E594233 [37481]">
      <seq>gttttgggtagcagcagagtgtgagcttcacatgagtgtttctatggcctattctggaaataacatgaaagtggggggctggccatggcaacactttgaagcattttgttattaatgcaccttccagacgaagggtttatagtatgcccagagcgaagcattgttttccttttcattttccaaatatagaagggtccttctggtttttgacttctcaatttgttgtggtggtgagaagctccccagttacatgtatattagtactaccagagttaattctttgtgatggtatgttcgacttctgcagttggtagaaaattttacatctatatttgaccggtgtaattgcatctcctttatcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="53192" stop="52231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52892" g_stop="52526" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E594233" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52892" e_stop="52526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGGGTAGCAGCAGAGCGAGAGCTTCAGATGAGTGTTTCTATGGCCTATTCTGGAAATAACATTAAAAGTGGGGGGCTGGCCATGGCAACACTTTGAAGCATTTTGTTATTAATGCATCTTCCAGA-GAAGGGTTTATAGTAATGCCCAGAGCGAAGCATTGCTTTCCTTTTCCATTTCCAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGCGTGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTTACATCTATATTTGACCGGTGTAATTGCATCTCCTCTATCTTACT</genome_strand>
        <mrna_strand>GTTTTGGGTAGCAGCAGAGTGTGAGCTTCACATGAGTGTTTCTATGGCCTATTCTGGAAATAACA-TGAAAGTGGGGGGCTGGCCATGGCAACACTTTGAAGCATTTTGTTATTAATGCACCTTCCAGACGAAGGGTTTATAGT-ATGCCCAGAGCGAAGCATTGTTTTCCTTTTCATTTTCCAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGTGAGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTTACATCTATATTTGACCGGTGTAATTGCATCTCCTTTATCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588547" ref_strand="-" ref_description="SGN-E588547 [42103]">
      <seq>cgccctaatcacctcatgcaaatgccaaagagcaaagagtgagaagttccccccacaacaccaggacggaggacttggcgttcccttgggtgcctcacatcagcattgatccatcccttgtccctcctgatgtgccattcagttcgacctcattcacatattccaaagaacctgtccagaattggtcaggccctttagtagagcctgcttcagctggtggaaggcggaagaagcatactgcaggtgatgccaaaaaacatttgtcaaagaaaagatgagaagcaacattgttttgggtagcagcagagtgtgagcttcagatgagtgtttctatggcctatttctggaaataacatgaaagtggggggctggccatggcaacactttgaagcattttgttattaatgcaccttccagagaagggtttatagtatgcccagagcgaagcattgttttccttgttcattttcncaaatatagaagggtccttctggtttttgacttctcaatttgttgtggtggtgagaagctccccagttacatgtatattagtactaccagagttaattctttgtgatggtatgttcgacttctgcagttggtagaaaattttgacatctatatttgaccggtggaaaaaaaaaaaaaaaaacaaaaaacaagtagtaaattcatgaaaaaaaatactcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="53476" stop="52247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53179" g_stop="52551" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="659"/>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E588547" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588547" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53179" e_stop="52551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGCCTAATCA-CTCACGCAAATG-CAAAGAGC-AAGAGTGAGAAGTTTCCCCCACCACACCAGGACGGAGGACTTGGCGTTCCCTTGGGTGCTTCACATCA-CATTGATCCGTCCCTTGTCCCTCCGGATGTGCCATTCAGTTCGACCTCATTCACATATTCAAAAGAACCTGTCCAGAATTGGTCAGGCCCTTTAGTAGAGCCTGCTTCAGCTGGTGGAAGGCGGAAGAAGCATACTGCAGGCGATGCCAAAAAGCATTTGTCAAAGAGAAGATGAGAAGCAACCTTGTTTTGGGTAGCAGCAGAGCGAGAGCTTCAGATGAGTGTTTCTATGGCCTA-TTCTGGAAATAACATTAAAAGTGGGGGGCTGGCCATGGCAACACTTTGAAGCATTTTGTTATTAATGCATCTTCCAGAGAAGGGTTTATAGTAATGCCCAGAGCGAAGCATTGCTTTCCTT-TTCCATTTC-CAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGCGTGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTT-ACATCTATATTTGACCGGT</genome_strand>
        <mrna_strand>CG-C-CCTAATCACCTCATGCAAATGCCAAAGAGCAAAGAGTGAGAAGTTCCCCCCACAACACCAGGACGGAGGACTTGGCGTTCCCTTGGGTGCCTCACATCAGCATTGATCCATCCCTTGTCCCTCCTGATGTGCCATTCAGTTCGACCTCATTCACATATTCCAAAGAACCTGTCCAGAATTGGTCAGGCCCTTTAGTAGAGCCTGCTTCAGCTGGTGGAAGGCGGAAGAAGCATACTGCAGGTGATGCCAAAAAACATTTGTCAAAGAAAAGATGAGAAGCAACATTGTTTTGGGTAGCAGCAGAGTGTGAGCTTCAGATGAGTGTTTCTATGGCCTATTTCTGGAAATAACA-TGAAAGTGGGGGGCTGGCCATGGCAACACTTTGAAGCATTTTGTTATTAATGCACCTTCCAGAGAAGGGTTTATAGT-ATGCCCAGAGCGAAGCATTGTTTTCCTTGTTCATTTTCNCAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGTGAGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTTGACATCTATATTTGACCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251988" ref_strand="+" ref_description="SGN-E251988 [cLEG-8-C21]">
      <seq>gtgagtgcagctttaaagttaagaggaatgccatctgtgttagcaaactagaagagagaatagtgttactgatcctagtaatctaagtatggaggtcttgtgcgcactttactttatctggcaacaatatgtcatttgcagtgtagaaatataaagtcagatatccgtgtctcgtgaaaaagatatttgtagcatacaggacttgcttgtcaacttgtcaatgctttagctttacattgttattgtaccatgtttggatgcaattgatcttttggaaatcttattcttctctcattggttttacagtttcaacaatgtaactatagaggccattgatatttgtaaattcattttttccatttctaattagaaataacaatattaaatattcacttctgggttccatctgatgcttgtgaaatggtgacaagctgttcattccatctcatcatgcaggctaagagccgctaataaagctacaggagatggtgctaagagagtacgccatcgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="54565" stop="53452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54265" g_stop="53752" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-E251988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54265" e_stop="53752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGTGCAGCTTTAAAGTTAAGAGGAATGCCATCTGTGTTAGCAAACTAGAAGAGAGAATAGTGTTACTGATCCTAGTAATCTAAGTATGGAGGTCTTGTGCGCACTTTACTTTATCTGGCAACAATATGTCATTTGCAGTGTAGAAATATAAAGTCAGATATCCGTGTCTCGTGAAAAAGATATTTGTAGCATACAGGACTTGCTTGTCAACTTGTCAATGCTTTAGCTTTACATTGTTATTGTACCATGTTTGGATGCAATTGATCTTTTGGAAATCTTATTCTTCTCTCATTGGTTTTACAGTTTCAACAATGTAACTATAGAGGCCATTGATATTTGTAAATTCATTTTTTCCATTTCTAATTAGAAATAACAATATTAAATATTCACTTCTGGGTTCCATCTGATGCTTGTGAAATGGTGACAAGCTGTTCATTCCATCTCATCATGCAGGCTAAGAGCCGCTAATAAAGCTACAGGAGATGGTGCTAAGAGAGTACGCCATCGTGAA</genome_strand>
        <mrna_strand>GTGAGTGCAGCTTTAAAGTTAAGAGGAATGCCATCTGTGTTAGCAAACTAGAAGAGAGAATAGTGTTACTGATCCTAGTAATCTAAGTATGGAGGTCTTGTGCGCACTTTACTTTATCTGGCAACAATATGTCATTTGCAGTGTAGAAATATAAAGTCAGATATCCGTGTCTCGTGAAAAAGATATTTGTAGCATACAGGACTTGCTTGTCAACTTGTCAATGCTTTAGCTTTACATTGTTATTGTACCATGTTTGGATGCAATTGATCTTTTGGAAATCTTATTCTTCTCTCATTGGTTTTACAGTTTCAACAATGTAACTATAGAGGCCATTGATATTTGTAAATTCATTTTTTCCATTTCTAATTAGAAATAACAATATTAAATATTCACTTCTGGGTTCCATCTGATGCTTGTGAAATGGTGACAAGCTGTTCATTCCATCTCATCATGCAGGCTAAGAGCCGCTAATAAAGCTACAGGAGATGGTGCTAAGAGAGTACGCCATCGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>65</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8066" PGL_stop="9567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8066" e_stop="8185"/>
            <exon e_start="8827" e_stop="9309"/>
            <exon e_start="9422" e_stop="9567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="0.893"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.952"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="8066" e_stop="8185" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8186" i_stop="8826" i_length="641"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="8827" e_stop="9309" e_length="483"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="9310" i_stop="9421" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="9422" e_stop="9567" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8066" stop="8185"/>
              <exon start="8827" stop="9309"/>
              <exon start="9422" stop="9567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8072" stop="8185"/>
              <exon start="8827" stop="9309"/>
              <exon start="9422" stop="9511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8074" stop="8185"/>
              <exon start="8827" stop="9207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTATGATTATACTCTTTTCTTGTCTTACAGCAAAGAAACGTTGAAGACTACAGACACCACATAAAACTCTCTCTCTCTTATTTCCTATTTTTGGCTCAGATTTGATCAACCCAGCAA : GTGTTGTAGATTCTGAGTTGATTGTGGAAATTGGTTGGTTAATCCATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGCTTCATCAGGCTTAGTACACAATGGCAGAGAGGAGAAAAGGGAAGGTGCACATTATGAGAAGAAGAGTCAGAGCATTAGCGCTGAATCCACTGAAACTTTTGAGGTCAAGGGGGCTGAAAATGTAACTGTTGACACTGAAGTTGTGGAAGCCGATGAAGGTGATGAAACTAAGAAGGATGACAAGACGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAGCAGGTTGCTGCTGGATGGCCTTCCTGGCTCTCTGCTCATGTTGGGGAAGCAATTGATGGTTGGCTCCCACGACGCGCTGACACTTTTGAGAAAATTGATAAG : ATTGGCCAAGGGACATACAGTAATGTCTACAAGGCGAGAGATACTGTTACTGGTAAAATTGTTGCTCTAAAGAAAGTGCGTTTTGACAATCTAGAACCTGAGAGTGTGAGATTCATGGCTAGAGAAATTATAATTTTGCGACAACT</gDNA_template>
            <first_frame> L  L  *  L  Y  S  F  L  V  L  Q  Q  R  N  V  E  D  Y  R  H  H  I  K  L  S  L  S  Y  F  L  F  L  A  Q  I  *  S  T  Q  Q  :  V  L  *  I  L  S  *  L  W  K  L  V  G  *  S  M  R  M  L  S  Y  E  V  *  T  *  K  M  G  C  V  L  G  R  E  A  S  S  G  L  V  H  N  G  R  E  E  K  R  E  G  A  H  Y  E  K  K  S  Q  S  I  S  A  E  S  T  E  T  F  E  V  K  G  A  E  N  V  T  V  D  T  E  V  V  E  A  D  E  G  D  E  T  K  K  D  D  K  T  E  H  D  G  K  S  R  K  E  K  R  R  S  K  P  D  P  R  L  S  N  P  P  K  H  K  H  G  E  Q  V  A  A  G  W  P  S  W  L  S  A  H  V  G  E  A  I  D  G  W  L  P  R  R  A  D  T  F  E  K  I  D  K  :  I  G  Q  G  T  Y  S  N  V  Y  K  A  R  D  T  V  T  G  K  I  V  A  L  K  K  V  R  F  D  N  L  E  P  E  S  V  R  F  M  A  R  E  I  I  I  L  R  Q   </first_frame>
            <second_frame>  F  Y  D  Y  T  L  F  L  S  Y  S  K  E  T  L  K  T  T  D  T  T  *  N  S  L  S  L  I  S  Y  F  W  L  R  F  D  Q  P  S  K :   C  C  R  F  *  V  D  C  G  N  W  L  V  N  P  *  E  C  *  V  M  K  C  R  P  E  R  W  G  V  F  W  V  G  K  L  H  Q  A  *  Y  T  M  A  E  R  R  K  G  K  V  H  I  M  R  R  R  V  R  A  L  A  L  N  P  L  K  L  L  R  S  R  G  L  K  M  *  L  L  T  L  K  L  W  K  P  M  K  V  M  K  L  R  R  M  T  R  R  S  M  T  E  N  L  G  K  K  R  E  G  R  S  L  I  Q  D  *  V  I  H  L  S  I  N  M  G  S  R  L  L  L  D  G  L  P  G  S  L  L  M  L  G  K  Q  L  M  V  G  S  H  D  A  L  T  L  L  R  K  L  I  R :   L  A  K  G  H  T  V  M  S  T  R  R  E  I  L  L  L  V  K  L  L  L  *  R  K  C  V  L  T  I  *  N  L  R  V  *  D  S  W  L  E  K  L  *  F  C  D  N  </second_frame>
            <third_frame>   F  M  I  I  L  F  S  C  L  T  A  K  K  R  *  R  L  Q  T  P  H  K  T  L  S  L  L  F  P  I  F  G  S  D  L  I  N  P  A   : S  V  V  D  S  E  L  I  V  E  I  G  W  L  I  H  E  N  V  E  L  *  S  V  D  L  K  D  G  V  C  F  G  S  G  S  F  I  R  L  S  T  Q  W  Q  R  G  E  K  G  R  C  T  L  *  E  E  E  S  E  H  *  R  *  I  H  *  N  F  *  G  Q  G  G  *  K  C  N  C  *  H  *  S  C  G  S  R  *  R  *  *  N  *  E  G  *  Q  D  G  A  *  R  K  I  *  E  R  K  E  K  V  E  A  *  S  K  I  K  *  S  T  *  A  *  T  W  G  A  G  C  C  W  M  A  F  L  A  L  C  S  C  W  G  S  N  *  W  L  A  P  T  T  R  *  H  F  *  E  N  *  *   : D  W  P  R  D  I  Q  *  C  L  Q  G  E  R  Y  C  Y  W  *  N  C  C  S  K  E  S  A  F  *  Q  S  R  T  *  E  C  E  I  H  G  *  R  N  Y  N  F  A  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8905" stop="9309"/>
                    <exon start="9422" stop="9565"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGCVLGREASSGLVHNGREEKREGAHYEKKSQSISAESTETFEVKGAENVTVDTEVVEADEGDETKKDDKTEHDGKSRKEKRRSKPDPRLSNPPKHKHGEQVAAGWPSWLSAHVGEAIDGWLPRRADTFEKIDKIGQGTYSNVYKARDTVTGKIVALKKVRFDNLEPESVRFMAREIIILRQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8362" e_stop="8443"/>
            <exon e_start="8827" e_stop="9305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.976"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="8362" e_stop="8443" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8444" i_stop="8826" i_length="383"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="8827" e_stop="9305" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8362" stop="8443"/>
              <exon start="8827" stop="9305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8362" stop="8443"/>
              <exon start="8827" stop="9184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATTTTGGGTCAGATGAAAAGATTGATTTGGGTTTGACTGTGAATCTGAAACTGGGTGACAAGTGCGACCAAGTAAAAGG : GTGTTGTAGATTCTGAGTTGATTGTGGAAATTGGTTGGTTAATCCATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGCTTCATCAGGCTTAGTACACAATGGCAGAGAGGAGAAAAGGGAAGGTGCACATTATGAGAAGAAGAGTCAGAGCATTAGCGCTGAATCCACTGAAACTTTTGAGGTCAAGGGGGCTGAAAATGTAACTGTTGACACTGAAGTTGTGGAAGCCGATGAAGGTGATGAAACTAAGAAGGATGACAAGACGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAGCAGGTTGCTGCTGGATGGCCTTCCTGGCTCTCTGCTCATGTTGGGGAAGCAATTGATGGTTGGCTCCCACGACGCGCTGACACTTTTGAGAAAATTGA</gDNA_template>
            <first_frame> F  I  L  G  Q  M  K  R  L  I  W  V  *  L  *  I  *  N  W  V  T  S  A  T  K  *  K   : G  V  V  D  S  E  L  I  V  E  I  G  W  L  I  H  E  N  V  E  L  *  S  V  D  L  K  D  G  V  C  F  G  S  G  S  F  I  R  L  S  T  Q  W  Q  R  G  E  K  G  R  C  T  L  *  E  E  E  S  E  H  *  R  *  I  H  *  N  F  *  G  Q  G  G  *  K  C  N  C  *  H  *  S  C  G  S  R  *  R  *  *  N  *  E  G  *  Q  D  G  A  *  R  K  I  *  E  R  K  E  K  V  E  A  *  S  K  I  K  *  S  T  *  A  *  T  W  G  A  G  C  C  W  M  A  F  L  A  L  C  S  C  W  G  S  N  *  W  L  A  P  T  T  R  *  H  F  *  E  N  * </first_frame>
            <second_frame>  L  F  W  V  R  *  K  D  *  F  G  F  D  C  E  S  E  T  G  *  Q  V  R  P  S  K  R  :  V  L  *  I  L  S  *  L  W  K  L  V  G  *  S  M  R  M  L  S  Y  E  V  *  T  *  K  M  G  C  V  L  G  R  E  A  S  S  G  L  V  H  N  G  R  E  E  K  R  E  G  A  H  Y  E  K  K  S  Q  S  I  S  A  E  S  T  E  T  F  E  V  K  G  A  E  N  V  T  V  D  T  E  V  V  E  A  D  E  G  D  E  T  K  K  D  D  K  T  E  H  D  G  K  S  R  K  E  K  R  R  S  K  P  D  P  R  L  S  N  P  P  K  H  K  H  G  E  Q  V  A  A  G  W  P  S  W  L  S  A  H  V  G  E  A  I  D  G  W  L  P  R  R  A  D  T  F  E  K  I   </second_frame>
            <third_frame>   Y  F  G  S  D  E  K  I  D  L  G  L  T  V  N  L  K  L  G  D  K  C  D  Q  V  K  G :   C  C  R  F  *  V  D  C  G  N  W  L  V  N  P  *  E  C  *  V  M  K  C  R  P  E  R  W  G  V  F  W  V  G  K  L  H  Q  A  *  Y  T  M  A  E  R  R  K  G  K  V  H  I  M  R  R  R  V  R  A  L  A  L  N  P  L  K  L  L  R  S  R  G  L  K  M  *  L  L  T  L  K  L  W  K  P  M  K  V  M  K  L  R  R  M  T  R  R  S  M  T  E  N  L  G  K  K  R  E  G  R  S  L  I  Q  D  *  V  I  H  L  S  I  N  M  G  S  R  L  L  L  D  G  L  P  G  S  L  L  M  L  G  K  Q  L  M  V  G  S  H  D  A  L  T  L  L  R  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8905" stop="9303"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGCVLGREASSGLVHNGREEKREGAHYEKKSQSISAESTETFEVKGAENVTVDTEVVEADEGDETKKDDKTEHDGKSRKEKRRSKPDPRLSNPPKHKHGEQVAAGWPSWLSAHVGEAIDGWLPRRADTFEKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9923" PGL_stop="13211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9923" e_stop="10137"/>
            <exon e_start="10855" e_stop="11082"/>
            <exon e_start="13121" e_stop="13211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.130" e_score="0.991"/>
          <exon-intron don_prob="0.994" acc_prob="0.904" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="9923" e_stop="10137" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.130">
            <gDNA_intron_boundary i_start="10138" i_stop="10854" i_length="717"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="10855" e_stop="11082" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.904">
            <gDNA_intron_boundary i_start="11083" i_stop="13120" i_length="2038"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13121" e_stop="13211" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9923" stop="10137"/>
              <exon start="10855" stop="11042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10864" stop="11082"/>
              <exon start="13121" stop="13211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGCATTCTCAGAATTGCTGACTTTGGACTGGCTACTATTTTCGATCCTTCTCATAAGCATCAAATGACTAGTCGAGTGGTTACTCTCTGGTATAGACCACCAGAGCTGCTTCTAGGTGCTACTGATTATGGTGTAGGTATTGATTTATGGAGTGCAGGTTGCATCTTAGCTGAGTTATTGGCTGGAAAACCCATTATGCCTGGTCGGACTGAG : GTAGAACAATTGCATAAGATATATAAACTCTGTGGTTCACCATCAGAGGAGTACTGGAAGAAGTCCAAGTTGCCGAATGCAACACTTTTCAAGCCTCGAGAACCCTACAGACGATGCATTAAGGAGACTTTTAAAGATTTTCCTCAGTCTTCACTTCCCCTGATTGATACATTACTTGCAATTGATCCCGCAGAACGCAAGACGGCTACTGATGCATTACGAAGTGAA : TTTTTCAATACAGAGCCATATGCCTGTGATCCCTCTAGTCTTCCAAAATATCCTCCAACCAAGGAAATGGATGCCAAACGGCGGGATGATG</gDNA_template>
            <first_frame> L  A  F  S  E  L  L  T  L  D  W  L  L  F  S  I  L  L  I  S  I  K  *  L  V  E  W  L  L  S  G  I  D  H  Q  S  C  F  *  V  L  L  I  M  V  *  V  L  I  Y  G  V  Q  V  A  S  *  L  S  Y  W  L  E  N  P  L  C  L  V  G  L  R :   *  N  N  C  I  R  Y  I  N  S  V  V  H  H  Q  R  S  T  G  R  S  P  S  C  R  M  Q  H  F  S  S  L  E  N  P  T  D  D  A  L  R  R  L  L  K  I  F  L  S  L  H  F  P  *  L  I  H  Y  L  Q  L  I  P  Q  N  A  R  R  L  L  M  H  Y  E  V  N :   F  S  I  Q  S  H  M  P  V  I  P  L  V  F  Q  N  I  L  Q  P  R  K  W  M  P  N  G  G  M  M </first_frame>
            <second_frame>  W  H  S  Q  N  C  *  L  W  T  G  Y  Y  F  R  S  F  S  *  A  S  N  D  *  S  S  G  Y  S  L  V  *  T  T  R  A  A  S  R  C  Y  *  L  W  C  R  Y  *  F  M  E  C  R  L  H  L  S  *  V  I  G  W  K  T  H  Y  A  W  S  D  *   : G  R  T  I  A  *  D  I  *  T  L  W  F  T  I  R  G  V  L  E  E  V  Q  V  A  E  C  N  T  F  Q  A  S  R  T  L  Q  T  M  H  *  G  D  F  *  R  F  S  S  V  F  T  S  P  D  *  Y  I  T  C  N  *  S  R  R  T  Q  D  G  Y  *  C  I  T  K  *   : I  F  Q  Y  R  A  I  C  L  *  S  L  *  S  S  K  I  S  S  N  Q  G  N  G  C  Q  T  A  G  *   </second_frame>
            <third_frame>   G  I  L  R  I  A  D  F  G  L  A  T  I  F  D  P  S  H  K  H  Q  M  T  S  R  V  V  T  L  W  Y  R  P  P  E  L  L  L  G  A  T  D  Y  G  V  G  I  D  L  W  S  A  G  C  I  L  A  E  L  L  A  G  K  P  I  M  P  G  R  T  E  :  V  E  Q  L  H  K  I  Y  K  L  C  G  S  P  S  E  E  Y  W  K  K  S  K  L  P  N  A  T  L  F  K  P  R  E  P  Y  R  R  C  I  K  E  T  F  K  D  F  P  Q  S  S  L  P  L  I  D  T  L  L  A  I  D  P  A  E  R  K  T  A  T  D  A  L  R  S  E  :  F  F  N  T  E  P  Y  A  C  D  P  S  S  L  P  K  Y  P  P  T  K  E  M  D  A  K  R  R  D  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9925" stop="10137"/>
                    <exon start="10855" stop="11082"/>
                    <exon start="13121" stop="13210"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GILRIADFGLATIFDPSHKHQMTSRVVTLWYRPPELLLGATDYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEEYWKKSKLPNATLFKPREPYRRCIKETFKDFPQSSLPLIDTLLAIDPAERKTATDALRSEFFNTEPYACDPSSLPKYPPTKEMDAKRRDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13719" PGL_stop="22605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13719" e_stop="13782"/>
            <exon e_start="13924" e_stop="14226"/>
            <exon e_start="14326" e_stop="14423"/>
            <exon e_start="15354" e_stop="15389"/>
            <exon e_start="15667" e_stop="15787"/>
            <exon e_start="15909" e_stop="16145"/>
            <exon e_start="17254" e_stop="17349"/>
            <exon e_start="17466" e_stop="17531"/>
            <exon e_start="17701" e_stop="17739"/>
            <exon e_start="17809" e_stop="17943"/>
            <exon e_start="18613" e_stop="18974"/>
            <exon e_start="19212" e_stop="19305"/>
            <exon e_start="20460" e_stop="20648"/>
            <exon e_start="20891" e_stop="21007"/>
            <exon e_start="21941" e_stop="22605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.735" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.819" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.380" e_score="1.000"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13719" e_stop="13782" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.735" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13783" i_stop="13923" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13924" e_stop="14226" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14227" i_stop="14325" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14326" e_stop="14423" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.913">
            <gDNA_intron_boundary i_start="14424" i_stop="15353" i_length="930"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15354" e_stop="15389" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.819">
            <gDNA_intron_boundary i_start="15390" i_stop="15666" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15667" e_stop="15787" e_length="121"/>
          </exon>
          <intron i_serial="5" don_prob="0.929" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15788" i_stop="15908" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15909" e_stop="16145" e_length="237"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="16146" i_stop="17253" i_length="1108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17254" e_stop="17349" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17350" i_stop="17465" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17466" e_stop="17531" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.915" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17532" i_stop="17700" i_length="169"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17701" e_stop="17739" e_length="39"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17740" i_stop="17808" i_length="69"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="17809" e_stop="17943" e_length="135"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.935">
            <gDNA_intron_boundary i_start="17944" i_stop="18612" i_length="669"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="18613" e_stop="18974" e_length="362"/>
          </exon>
          <intron i_serial="11" don_prob="0.991" acc_prob="0.849">
            <gDNA_intron_boundary i_start="18975" i_stop="19211" i_length="237"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="19212" e_stop="19305" e_length="94"/>
          </exon>
          <intron i_serial="12" don_prob="0.982" acc_prob="0.989">
            <gDNA_intron_boundary i_start="19306" i_stop="20459" i_length="1154"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="20460" e_stop="20648" e_length="189"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="20649" i_stop="20890" i_length="242"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="20891" e_stop="21007" e_length="117"/>
          </exon>
          <intron i_serial="14" don_prob="0.997" acc_prob="0.380">
            <gDNA_intron_boundary i_start="21008" i_stop="21940" i_length="933"/>
          </intron>
          <exon e_serial="15" e_score="0.933">
            <gDNA_exon_boundary e_start="21941" e_stop="22605" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13719" stop="13782"/>
              <exon start="13924" stop="14226"/>
              <exon start="14326" stop="14392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13957" stop="14147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14331" stop="14423"/>
              <exon start="15354" stop="15389"/>
              <exon start="15667" stop="15787"/>
              <exon start="15909" stop="16145"/>
              <exon start="17254" stop="17349"/>
              <exon start="17466" stop="17531"/>
              <exon start="17701" stop="17739"/>
              <exon start="17809" stop="17911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14331" stop="14423"/>
              <exon start="15354" stop="15389"/>
              <exon start="15667" stop="15787"/>
              <exon start="15909" stop="16145"/>
              <exon start="17254" stop="17349"/>
              <exon start="17466" stop="17531"/>
              <exon start="17701" stop="17710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15969" stop="16145"/>
              <exon start="17254" stop="17349"/>
              <exon start="17466" stop="17531"/>
              <exon start="17701" stop="17739"/>
              <exon start="17809" stop="17943"/>
              <exon start="18613" stop="18845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16039" stop="16145"/>
              <exon start="17254" stop="17349"/>
              <exon start="17466" stop="17531"/>
              <exon start="17701" stop="17739"/>
              <exon start="17809" stop="17943"/>
              <exon start="18613" stop="18733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16078" stop="16145"/>
              <exon start="17254" stop="17349"/>
              <exon start="17466" stop="17531"/>
              <exon start="17701" stop="17739"/>
              <exon start="17809" stop="17943"/>
              <exon start="18613" stop="18974"/>
              <exon start="19212" stop="19250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16081" stop="16145"/>
              <exon start="17254" stop="17349"/>
              <exon start="17466" stop="17531"/>
              <exon start="17701" stop="17739"/>
              <exon start="17809" stop="17943"/>
              <exon start="18613" stop="18974"/>
              <exon start="19212" stop="19305"/>
              <exon start="20460" stop="20476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16081" stop="16145"/>
              <exon start="17254" stop="17349"/>
              <exon start="17466" stop="17531"/>
              <exon start="17701" stop="17739"/>
              <exon start="17809" stop="17943"/>
              <exon start="18613" stop="18974"/>
              <exon start="19212" stop="19305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16081" stop="16145"/>
              <exon start="17254" stop="17349"/>
              <exon start="17466" stop="17531"/>
              <exon start="17701" stop="17739"/>
              <exon start="17809" stop="17943"/>
              <exon start="18613" stop="18974"/>
              <exon start="19212" stop="19264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16082" stop="16145"/>
              <exon start="17254" stop="17349"/>
              <exon start="17466" stop="17531"/>
              <exon start="17701" stop="17739"/>
              <exon start="17809" stop="17943"/>
              <exon start="18613" stop="18974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17260" stop="17349"/>
              <exon start="17466" stop="17531"/>
              <exon start="17701" stop="17739"/>
              <exon start="17809" stop="17943"/>
              <exon start="18613" stop="18887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17339" stop="17349"/>
              <exon start="17466" stop="17531"/>
              <exon start="17701" stop="17739"/>
              <exon start="17809" stop="17943"/>
              <exon start="18613" stop="18881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18613" stop="18974"/>
              <exon start="19212" stop="19305"/>
              <exon start="20460" stop="20648"/>
              <exon start="20891" stop="21007"/>
              <exon start="21941" stop="22033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18831" stop="18974"/>
              <exon start="19212" stop="19305"/>
              <exon start="20460" stop="20648"/>
              <exon start="20891" stop="21007"/>
              <exon start="21941" stop="22233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18832" stop="18974"/>
              <exon start="19212" stop="19305"/>
              <exon start="20460" stop="20648"/>
              <exon start="20891" stop="20911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20520" stop="20648"/>
              <exon start="20891" stop="21007"/>
              <exon start="21941" stop="22439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421377" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22004" stop="22605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22004" stop="22587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTATTAAGACACTCCGGCAGCACTCCGATTACGTCACCACCCTTGCTTCAGCAGAAAAAAAT : AGCAATGTTATTGCATCTGCTGGTCTTGGTGGTGAGGTTTTCATATGGGATCTTGAAGCTGCACTTACTCCGACATCTAAGTCCGGTGATGCCACCGAAGAAGACTGTTCAAATGGTGTCAATGGTTCAGGAAGTTCATTGCCCATGACAAGCATCCGTCCTATCAGTTCGGGCAATAACATTTCCTTGCAGACCCAGTCTCAAGTATATATTCCTGTGACTGCAAAAGGCCATAAGGAGTCCGTATATGCATTGGCAATGAATGAGAGTGGATCCCTTCTTGTTTCTGGTGGTACTGAGAAG : GTTGTGCGCGTTTGGGACCCAAGAACTGGTTCCAAGACCATGAAGCTAAAAGGTCATACAGATAATATTAGGGCTCTTCTGATAGACTCCACTGGCAG : GTTCTGCATATCTGGATCCTCTGATTCCATGATTAG : ACTATGGGATCTAGGTCAGCAGCGTTGCGTGCATTCTTATGCTGTGCATACGGATTCTGTATGGTCACTTGCTAGCACTCCTACGTTTAGTCATGTTTATAGTGGTGGAAGAGACCTATCT : TTATACTTGACAGATTTGGCAACAAGGGAGAGTGTATTGATGTGCACAAAGGAACACCCCATTTTGCAGTTAGCATTGCATGATGATGGCATTTGGGTGGCCACAACTGATTCATCTGTACATAGGTGGGCTGCAGAAGTGCGTAATCCCCAGAAAGTTTTCCAAAGAGGGGGCTCATTCTTGGCTGGAAACTTGTCCTTTTCCCGGGCAAGGGTTTCTCTAGAAGGATCTACACCT : GTTCCTGTTTATAAAGAACCATCTCTTAGCATTCCTGGAACTCCAGGAATAGTGCAGCATGAGATTTTGAACAACAGAAGACATGTCCTGACTAAG : GATACTGCTGGAACAGTGAAGTTGTGGGAGATCACTAGAGGCACTGTGATTCACAACTATGGAGAG : GTTTCATTTGAGAAGAAGAAAGAAGAACTTTTTGAGATG : GTGAGCATCCCTGCATGGTTCACTGTGGACACTAAGCTTGGAAACTTGTCTGTACATCTGGATACACCACAATGCTTTTCTGCTGAGATGTACTCTGCTGATCTCCACATTCCAGGGAAGCCTGAAGATGACAAG : GTTAATTTGGCACGAGAAACCCTTAAAGGGCTGTTGGCTCATTGGTTAGCCAAAAGAAAACAGAGATTTGGATCTCAAGCTTTGGCCAATGGGGAAGCCCCAGCTGGAAAGGATGTACCTACAAGGAATCTGACCGCGTCAAAAATTGAAGTGGACGGTAGTGCTGACAATGATGCTGCAGTATATCCTCCCTTTGAATTTTCAGCAGCATGCCCTCCATCAATTATTACTGAGGGTTCTCAAAGTGGTCCATGGAGGAAAAAGATTACCGACTTAGATGGAACAGAAGATGAAAAGGACATGCCATGGTGGGTAGTGGATTGTGTGATGAACAATCGGTTGCCTCCCAGGGAAAATACCAA : ATGTAGCTTCTACTTACATCCATGCGAGGGTTCTACTGTTCAGATCCTTACCCAGGGAAAGCTGAGTGCGCCTCGCATATTAAGAATTCACAAA : GTCGTCAACTATGTTATAGAAAAGATGGTTCTTGATAAGCCACTGGATAGCCTAAACTCAGATGGAGCTGCTGGAGTGTCTGGTGGACAGGTGACACACCCAGCTAATGGAGGAGATGGCATATTTCGGACTGGGCTGAAGCCTTGGCAAAAGCTTAAACCATCCATAGAGATATTGTGCAGTAACCAG : GTCTTATCCCCTGATATGAGCTTAGCGACTGTCCGTGCATATATATGGAAGAAACCTGAAGACCTTATCCTCAACTACCGGGTGTTGACGAGCAAGGGATAGGATTCTGTCTGTCAG : GTCCAGAGTAGCTGGAGGTGATTGAGCTGCTCCTCAAAAATAATTGGAAGGTTTAGCATTCAACTGGCTGCTTGCTGCTGTGTCATATGAGTAGTTGCTTCCTTGTAGATCTGAGATCCAGGTGGTTGGATTAATTATGAAAATTTACACATTTGGACCATTTTTCTGTTTGCACGTCGGAAGGTGGTGATTATTGAGTTTTGGTTTTTGGTGCATTTAGAAGAAAATAGAAAGTTTGCATTTTCTAAAGAAAGGATTTTTGGTTTTGAGGGGACATGAGGCTGAATGTTTCAAGAGAAAGAGCTCGTGATGATGTTGTCGGGAGCCTGTAGATTTATATATAACTCTATATGCAAAGGCAGGGGTTTGGATTTCTTGATATAGTCTTTCAAGAACCACACTGTTGGGCAGGTGAATAATATCTCCAGAACAAAAACTTACCTTTTCTGGTCAAAACTAATTTATATGTTTACTTTCTTTCTGGTATAATTTAATCTGTAAATCTTCTTTGTTATTAGTGTTCCTCAATTTTAGTGGGGAAAGATTTGGTGATAGGCCATTTATAACGCCAAGCAGATTGTTATTATATAGTTCTTACCGACTGTGCGATGATGTTGTTGCTCCGAATGGTGAAGTTTTGTGCTCATGTATCTGGAACAACTACT</gDNA_template>
            <first_frame> L  Y  *  D  T  P  A  A  L  R  L  R  H  H  P  C  F  S  R  K  K   : *  Q  C  Y  C  I  C  W  S  W  W  *  G  F  H  M  G  S  *  S  C  T  Y  S  D  I  *  V  R  *  C  H  R  R  R  L  F  K  W  C  Q  W  F  R  K  F  I  A  H  D  K  H  P  S  Y  Q  F  G  Q  *  H  F  L  A  D  P  V  S  S  I  Y  S  C  D  C  K  R  P  *  G  V  R  I  C  I  G  N  E  *  E  W  I  P  S  C  F  W  W  Y  *  E   : G  C  A  R  L  G  P  K  N  W  F  Q  D  H  E  A  K  R  S  Y  R  *  Y  *  G  S  S  D  R  L  H  W  Q  :  V  L  H  I  W  I  L  *  F  H  D  *  :  T  M  G  S  R  S  A  A  L  R  A  F  L  C  C  A  Y  G  F  C  M  V  T  C  *  H  S  Y  V  *  S  C  L  *  W  W  K  R  P  I   : F  I  L  D  R  F  G  N  K  G  E  C  I  D  V  H  K  G  T  P  H  F  A  V  S  I  A  *  *  W  H  L  G  G  H  N  *  F  I  C  T  *  V  G  C  R  S  A  *  S  P  E  S  F  P  K  R  G  L  I  L  G  W  K  L  V  L  F  P  G  K  G  F  S  R  R  I  Y  T   : C  S  C  L  *  R  T  I  S  *  H  S  W  N  S  R  N  S  A  A  *  D  F  E  Q  Q  K  T  C  P  D  *   : G  Y  C  W  N  S  E  V  V  G  D  H  *  R  H  C  D  S  Q  L  W  R   : G  F  I  *  E  E  E  R  R  T  F  *  D   : G  E  H  P  C  M  V  H  C  G  H  *  A  W  K  L  V  C  T  S  G  Y  T  T  M  L  F  C  *  D  V  L  C  *  S  P  H  S  R  E  A  *  R  *  Q   : G  *  F  G  T  R  N  P  *  R  A  V  G  S  L  V  S  Q  K  K  T  E  I  W  I  S  S  F  G  Q  W  G  S  P  S  W  K  G  C  T  Y  K  E  S  D  R  V  K  N  *  S  G  R  *  C  *  Q  *  C  C  S  I  S  S  L  *  I  F  S  S  M  P  S  I  N  Y  Y  *  G  F  S  K  W  S  M  E  E  K  D  Y  R  L  R  W  N  R  R  *  K  G  H  A  M  V  G  S  G  L  C  D  E  Q  S  V  A  S  Q  G  K  Y  Q  :  M  *  L  L  L  T  S  M  R  G  F  Y  C  S  D  P  Y  P  G  K  A  E  C  A  S  H  I  K  N  S  Q   : S  R  Q  L  C  Y  R  K  D  G  S  *  *  A  T  G  *  P  K  L  R  W  S  C  W  S  V  W  W  T  G  D  T  P  S  *  W  R  R  W  H  I  S  D  W  A  E  A  L  A  K  A  *  T  I  H  R  D  I  V  Q  *  P   : G  L  I  P  *  Y  E  L  S  D  C  P  C  I  Y  M  E  E  T  *  R  P  Y  P  Q  L  P  G  V  D  E  Q  G  I  G  F  C  L  S   : G  P  E  *  L  E  V  I  E  L  L  L  K  N  N  W  K  V  *  H  S  T  G  C  L  L  L  C  H  M  S  S  C  F  L  V  D  L  R  S  R  W  L  D  *  L  *  K  F  T  H  L  D  H  F  S  V  C  T  S  E  G  G  D  Y  *  V  L  V  F  G  A  F  R  R  K  *  K  V  C  I  F  *  R  K  D  F  W  F  *  G  D  M  R  L  N  V  S  R  E  R  A  R  D  D  V  V  G  S  L  *  I  Y  I  *  L  Y  M  Q  R  Q  G  F  G  F  L  D  I  V  F  Q  E  P  H  C  W  A  G  E  *  Y  L  Q  N  K  N  L  P  F  L  V  K  T  N  L  Y  V  Y  F  L  S  G  I  I  *  S  V  N  L  L  C  Y  *  C  S  S  I  L  V  G  K  D  L  V  I  G  H  L  *  R  Q  A  D  C  Y  Y  I  V  L  T  D  C  A  M  M  L  L  L  R  M  V  K  F  C  A  H  V  S  G  T  T  T </first_frame>
            <second_frame>  C  I  K  T  L  R  Q  H  S  D  Y  V  T  T  L  A  S  A  E  K  N  :  S  N  V  I  A  S  A  G  L  G  G  E  V  F  I  W  D  L  E  A  A  L  T  P  T  S  K  S  G  D  A  T  E  E  D  C  S  N  G  V  N  G  S  G  S  S  L  P  M  T  S  I  R  P  I  S  S  G  N  N  I  S  L  Q  T  Q  S  Q  V  Y  I  P  V  T  A  K  G  H  K  E  S  V  Y  A  L  A  M  N  E  S  G  S  L  L  V  S  G  G  T  E  K  :  V  V  R  V  W  D  P  R  T  G  S  K  T  M  K  L  K  G  H  T  D  N  I  R  A  L  L  I  D  S  T  G  R :   F  C  I  S  G  S  S  D  S  M  I  R :   L  W  D  L  G  Q  Q  R  C  V  H  S  Y  A  V  H  T  D  S  V  W  S  L  A  S  T  P  T  F  S  H  V  Y  S  G  G  R  D  L  S  :  L  Y  L  T  D  L  A  T  R  E  S  V  L  M  C  T  K  E  H  P  I  L  Q  L  A  L  H  D  D  G  I  W  V  A  T  T  D  S  S  V  H  R  W  A  A  E  V  R  N  P  Q  K  V  F  Q  R  G  G  S  F  L  A  G  N  L  S  F  S  R  A  R  V  S  L  E  G  S  T  P  :  V  P  V  Y  K  E  P  S  L  S  I  P  G  T  P  G  I  V  Q  H  E  I  L  N  N  R  R  H  V  L  T  K  :  D  T  A  G  T  V  K  L  W  E  I  T  R  G  T  V  I  H  N  Y  G  E  :  V  S  F  E  K  K  K  E  E  L  F  E  M  :  V  S  I  P  A  W  F  T  V  D  T  K  L  G  N  L  S  V  H  L  D  T  P  Q  C  F  S  A  E  M  Y  S  A  D  L  H  I  P  G  K  P  E  D  D  K  :  V  N  L  A  R  E  T  L  K  G  L  L  A  H  W  L  A  K  R  K  Q  R  F  G  S  Q  A  L  A  N  G  E  A  P  A  G  K  D  V  P  T  R  N  L  T  A  S  K  I  E  V  D  G  S  A  D  N  D  A  A  V  Y  P  P  F  E  F  S  A  A  C  P  P  S  I  I  T  E  G  S  Q  S  G  P  W  R  K  K  I  T  D  L  D  G  T  E  D  E  K  D  M  P  W  W  V  V  D  C  V  M  N  N  R  L  P  P  R  E  N  T  K :   C  S  F  Y  L  H  P  C  E  G  S  T  V  Q  I  L  T  Q  G  K  L  S  A  P  R  I  L  R  I  H  K  :  V  V  N  Y  V  I  E  K  M  V  L  D  K  P  L  D  S  L  N  S  D  G  A  A  G  V  S  G  G  Q  V  T  H  P  A  N  G  G  D  G  I  F  R  T  G  L  K  P  W  Q  K  L  K  P  S  I  E  I  L  C  S  N  Q  :  V  L  S  P  D  M  S  L  A  T  V  R  A  Y  I  W  K  K  P  E  D  L  I  L  N  Y  R  V  L  T  S  K  G  *  D  S  V  C  Q  :  V  Q  S  S  W  R  *  L  S  C  S  S  K  I  I  G  R  F  S  I  Q  L  A  A  C  C  C  V  I  *  V  V  A  S  L  *  I  *  D  P  G  G  W  I  N  Y  E  N  L  H  I  W  T  I  F  L  F  A  R  R  K  V  V  I  I  E  F  W  F  L  V  H  L  E  E  N  R  K  F  A  F  S  K  E  R  I  F  G  F  E  G  T  *  G  *  M  F  Q  E  K  E  L  V  M  M  L  S  G  A  C  R  F  I  Y  N  S  I  C  K  G  R  G  L  D  F  L  I  *  S  F  K  N  H  T  V  G  Q  V  N  N  I  S  R  T  K  T  Y  L  F  W  S  K  L  I  Y  M  F  T  F  F  L  V  *  F  N  L  *  I  F  F  V  I  S  V  P  Q  F  *  W  G  K  I  W  *  *  A  I  Y  N  A  K  Q  I  V  I  I  *  F  L  P  T  V  R  *  C  C  C  S  E  W  *  S  F  V  L  M  Y  L  E  Q  L   </second_frame>
            <third_frame>   V  L  R  H  S  G  S  T  P  I  T  S  P  P  L  L  Q  Q  K  K  I :   A  M  L  L  H  L  L  V  L  V  V  R  F  S  Y  G  I  L  K  L  H  L  L  R  H  L  S  P  V  M  P  P  K  K  T  V  Q  M  V  S  M  V  Q  E  V  H  C  P  *  Q  A  S  V  L  S  V  R  A  I  T  F  P  C  R  P  S  L  K  Y  I  F  L  *  L  Q  K  A  I  R  S  P  Y  M  H  W  Q  *  M  R  V  D  P  F  L  F  L  V  V  L  R  R :   L  C  A  F  G  T  Q  E  L  V  P  R  P  *  S  *  K  V  I  Q  I  I  L  G  L  F  *  *  T  P  L  A   : G  S  A  Y  L  D  P  L  I  P  *  L   : D  Y  G  I  *  V  S  S  V  A  C  I  L  M  L  C  I  R  I  L  Y  G  H  L  L  A  L  L  R  L  V  M  F  I  V  V  E  E  T  Y  L :   Y  T  *  Q  I  W  Q  Q  G  R  V  Y  *  C  A  Q  R  N  T  P  F  C  S  *  H  C  M  M  M  A  F  G  W  P  Q  L  I  H  L  Y  I  G  G  L  Q  K  C  V  I  P  R  K  F  S  K  E  G  A  H  S  W  L  E  T  C  P  F  P  G  Q  G  F  L  *  K  D  L  H  L :   F  L  F  I  K  N  H  L  L  A  F  L  E  L  Q  E  *  C  S  M  R  F  *  T  T  E  D  M  S  *  L  R :   I  L  L  E  Q  *  S  C  G  R  S  L  E  A  L  *  F  T  T  M  E  R :   F  H  L  R  R  R  K  K  N  F  L  R  W :   *  A  S  L  H  G  S  L  W  T  L  S  L  E  T  C  L  Y  I  W  I  H  H  N  A  F  L  L  R  C  T  L  L  I  S  T  F  Q  G  S  L  K  M  T  R :   L  I  W  H  E  K  P  L  K  G  C  W  L  I  G  *  P  K  E  N  R  D  L  D  L  K  L  W  P  M  G  K  P  Q  L  E  R  M  Y  L  Q  G  I  *  P  R  Q  K  L  K  W  T  V  V  L  T  M  M  L  Q  Y  I  L  P  L  N  F  Q  Q  H  A  L  H  Q  L  L  L  R  V  L  K  V  V  H  G  G  K  R  L  P  T  *  M  E  Q  K  M  K  R  T  C  H  G  G  *  W  I  V  *  *  T  I  G  C  L  P  G  K  I  P   : N  V  A  S  T  Y  I  H  A  R  V  L  L  F  R  S  L  P  R  E  S  *  V  R  L  A  Y  *  E  F  T  K :   S  S  T  M  L  *  K  R  W  F  L  I  S  H  W  I  A  *  T  Q  M  E  L  L  E  C  L  V  D  R  *  H  T  Q  L  M  E  E  M  A  Y  F  G  L  G  *  S  L  G  K  S  L  N  H  P  *  R  Y  C  A  V  T  R :   S  Y  P  L  I  *  A  *  R  L  S  V  H  I  Y  G  R  N  L  K  T  L  S  S  T  T  G  C  *  R  A  R  D  R  I  L  S  V  R :   S  R  V  A  G  G  D  *  A  A  P  Q  K  *  L  E  G  L  A  F  N  W  L  L  A  A  V  S  Y  E  *  L  L  P  C  R  S  E  I  Q  V  V  G  L  I  M  K  I  Y  T  F  G  P  F  F  C  L  H  V  G  R  W  *  L  L  S  F  G  F  W  C  I  *  K  K  I  E  S  L  H  F  L  K  K  G  F  L  V  L  R  G  H  E  A  E  C  F  K  R  K  S  S  *  *  C  C  R  E  P  V  D  L  Y  I  T  L  Y  A  K  A  G  V  W  I  S  *  Y  S  L  S  R  T  T  L  L  G  R  *  I  I  S  P  E  Q  K  L  T  F  S  G  Q  N  *  F  I  C  L  L  S  F  W  Y  N  L  I  C  K  S  S  L  L  L  V  F  L  N  F  S  G  E  R  F  G  D  R  P  F  I  T  P  S  R  L  L  L  Y  S  S  Y  R  L  C  D  D  V  V  A  P  N  G  E  V  L  C  S  C  I  W  N  N  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13720" stop="13782"/>
                    <exon start="13924" stop="14226"/>
                    <exon start="14326" stop="14423"/>
                    <exon start="15354" stop="15389"/>
                    <exon start="15667" stop="15787"/>
                    <exon start="15909" stop="16145"/>
                    <exon start="17254" stop="17349"/>
                    <exon start="17466" stop="17531"/>
                    <exon start="17701" stop="17739"/>
                    <exon start="17809" stop="17943"/>
                    <exon start="18613" stop="18974"/>
                    <exon start="19212" stop="19305"/>
                    <exon start="20460" stop="20648"/>
                    <exon start="20891" stop="20992"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1938</number_coding_nucleotides>
                  <number_encoded_amino_acids>646</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIKTLRQHSDYVTTLASAEKNSNVIASAGLGGEVFIWDLEAALTPTSKSGDATEEDCSNGVNGSGSSLPMTSIRPISSGNNISLQTQSQVYIPVTAKGHKESVYALAMNESGSLLVSGGTEKVVRVWDPRTGSKTMKLKGHTDNIRALLIDSTGRFCISGSSDSMIRLWDLGQQRCVHSYAVHTDSVWSLASTPTFSHVYSGGRDLSLYLTDLATRESVLMCTKEHPILQLALHDDGIWVATTDSSVHRWAAEVRNPQKVFQRGGSFLAGNLSFSRARVSLEGSTPVPVYKEPSLSIPGTPGIVQHEILNNRRHVLTKDTAGTVKLWEITRGTVIHNYGEVSFEKKKEELFEMVSIPAWFTVDTKLGNLSVHLDTPQCFSAEMYSADLHIPGKPEDDKVNLARETLKGLLAHWLAKRKQRFGSQALANGEAPAGKDVPTRNLTASKIEVDGSADNDAAVYPPFEFSAACPPSIITEGSQSGPWRKKITDLDGTEDEKDMPWWVVDCVMNNRLPPRENTKCSFYLHPCEGSTVQILTQGKLSAPRILRIHKVVNYVIEKMVLDKPLDSLNSDGAAGVSGGQVTHPANGGDGIFRTGLKPWQKLKPSIEILCSNQVLSPDMSLATVRAYIWKKPEDLILNYRVLTSKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22401" stop="22604"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FICLLSFWYNLICKSSLLLVFLNFSGERFGDRPFITPSRLLLYSSYRLCDDVVAPNGEVLCSCIWNNY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20888" e_stop="21007"/>
            <exon e_start="21941" e_stop="22605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.380" e_score="0.992"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="20888" e_stop="21007" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.380">
            <gDNA_intron_boundary i_start="21008" i_stop="21940" i_length="933"/>
          </intron>
          <exon e_serial="2" e_score="0.933">
            <gDNA_exon_boundary e_start="21941" e_stop="22605" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20888" stop="21007"/>
              <exon start="21941" stop="22495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22004" stop="22605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22004" stop="22587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGTCTTATCCCCTGATATGAGCTTAGCGACTGTCCGTGCATATATATGGAAGAAACCTGAAGACCTTATCCTCAACTACCGGGTGTTGACGAGCAAGGGATAGGATTCTGTCTGTCAG : GTCCAGAGTAGCTGGAGGTGATTGAGCTGCTCCTCAAAAATAATTGGAAGGTTTAGCATTCAACTGGCTGCTTGCTGCTGTGTCATATGAGTAGTTGCTTCCTTGTAGATCTGAGATCCAGGTGGTTGGATTAATTATGAAAATTTACACATTTGGACCATTTTTCTGTTTGCACGTCGGAAGGTGGTGATTATTGAGTTTTGGTTTTTGGTGCATTTAGAAGAAAATAGAAAGTTTGCATTTTCTAAAGAAAGGATTTTTGGTTTTGAGGGGACATGAGGCTGAATGTTTCAAGAGAAAGAGCTCGTGATGATGTTGTCGGGAGCCTGTAGATTTATATATAACTCTATATGCAAAGGCAGGGGTTTGGATTTCTTGATATAGTCTTTCAAGAACCACACTGTTGGGCAGGTGAATAATATCTCCAGAACAAAAACTTACCTTTTCTGGTCAAAACTAATTTATATGTTTACTTTCTTTCTGGTATAATTTAATCTGTAAATCTTCTTTGTTATTAGTGTTCCTCAATTTTAGTGGGGAAAGATTTGGTGATAGGCCATTTATAACGCCAAGCAGATTGTTATTATATAGTTCTTACCGACTGTGCGATGATGTTGTTGCTCCGAATGGTGAAGTTTTGTGCTCATGTATCTGGAACAACTACT</gDNA_template>
            <first_frame> Q  V  L  S  P  D  M  S  L  A  T  V  R  A  Y  I  W  K  K  P  E  D  L  I  L  N  Y  R  V  L  T  S  K  G  *  D  S  V  C  Q  :  V  Q  S  S  W  R  *  L  S  C  S  S  K  I  I  G  R  F  S  I  Q  L  A  A  C  C  C  V  I  *  V  V  A  S  L  *  I  *  D  P  G  G  W  I  N  Y  E  N  L  H  I  W  T  I  F  L  F  A  R  R  K  V  V  I  I  E  F  W  F  L  V  H  L  E  E  N  R  K  F  A  F  S  K  E  R  I  F  G  F  E  G  T  *  G  *  M  F  Q  E  K  E  L  V  M  M  L  S  G  A  C  R  F  I  Y  N  S  I  C  K  G  R  G  L  D  F  L  I  *  S  F  K  N  H  T  V  G  Q  V  N  N  I  S  R  T  K  T  Y  L  F  W  S  K  L  I  Y  M  F  T  F  F  L  V  *  F  N  L  *  I  F  F  V  I  S  V  P  Q  F  *  W  G  K  I  W  *  *  A  I  Y  N  A  K  Q  I  V  I  I  *  F  L  P  T  V  R  *  C  C  C  S  E  W  *  S  F  V  L  M  Y  L  E  Q  L   </first_frame>
            <second_frame>  R  S  Y  P  L  I  *  A  *  R  L  S  V  H  I  Y  G  R  N  L  K  T  L  S  S  T  T  G  C  *  R  A  R  D  R  I  L  S  V  R :   S  R  V  A  G  G  D  *  A  A  P  Q  K  *  L  E  G  L  A  F  N  W  L  L  A  A  V  S  Y  E  *  L  L  P  C  R  S  E  I  Q  V  V  G  L  I  M  K  I  Y  T  F  G  P  F  F  C  L  H  V  G  R  W  *  L  L  S  F  G  F  W  C  I  *  K  K  I  E  S  L  H  F  L  K  K  G  F  L  V  L  R  G  H  E  A  E  C  F  K  R  K  S  S  *  *  C  C  R  E  P  V  D  L  Y  I  T  L  Y  A  K  A  G  V  W  I  S  *  Y  S  L  S  R  T  T  L  L  G  R  *  I  I  S  P  E  Q  K  L  T  F  S  G  Q  N  *  F  I  C  L  L  S  F  W  Y  N  L  I  C  K  S  S  L  L  L  V  F  L  N  F  S  G  E  R  F  G  D  R  P  F  I  T  P  S  R  L  L  L  Y  S  S  Y  R  L  C  D  D  V  V  A  P  N  G  E  V  L  C  S  C  I  W  N  N  Y  </second_frame>
            <third_frame>   G  L  I  P  *  Y  E  L  S  D  C  P  C  I  Y  M  E  E  T  *  R  P  Y  P  Q  L  P  G  V  D  E  Q  G  I  G  F  C  L  S   : G  P  E  *  L  E  V  I  E  L  L  L  K  N  N  W  K  V  *  H  S  T  G  C  L  L  L  C  H  M  S  S  C  F  L  V  D  L  R  S  R  W  L  D  *  L  *  K  F  T  H  L  D  H  F  S  V  C  T  S  E  G  G  D  Y  *  V  L  V  F  G  A  F  R  R  K  *  K  V  C  I  F  *  R  K  D  F  W  F  *  G  D  M  R  L  N  V  S  R  E  R  A  R  D  D  V  V  G  S  L  *  I  Y  I  *  L  Y  M  Q  R  Q  G  F  G  F  L  D  I  V  F  Q  E  P  H  C  W  A  G  E  *  Y  L  Q  N  K  N  L  P  F  L  V  K  T  N  L  Y  V  Y  F  L  S  G  I  I  *  S  V  N  L  L  C  Y  *  C  S  S  I  L  V  G  K  D  L  V  I  G  H  L  *  R  Q  A  D  C  Y  Y  I  V  L  T  D  C  A  M  M  L  L  L  R  M  V  K  F  C  A  H  V  S  G  T  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22401" stop="22604"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FICLLSFWYNLICKSSLLLVFLNFSGERFGDRPFITPSRLLLYSSYRLCDDVVAPNGEVLCSCIWNNY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="22503" PGL_stop="22056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22503" e_stop="22056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="22503" e_stop="22056" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22503" stop="22056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22454" stop="22057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205445" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATGGCCTATCACCAAATCTTTCCCCACTAAAATTGAGGAACACTAATAACAAAGAAGATTTACAGATTAAATTATACCAGAAAGAAAGTAAACATATAAATTAGTTTTGACCAGAAAAGGTAAGTTTTTGTTCTGGAGATATTATTCACCTGCCCAACAGTGTGGTTCTTGAAAGACTATATCAAGAAATCCAAACCCCTGCCTTTGCATATAGAGTTATATATAAATCTACAGGCTCCCGACAACATCATCACGAGCTCTTTCTCTTGAAACATTCAGCCTCATGTCCCCTCAAAACCAAAAATCCTTTCTTTAGAAAATGCAAACTTTCTATTTTCTTCTAAATGCACCAAAAACCAAAACTCAATAATCACCACCTTCCGACGTGCAAACAGAAAAATGGTCCAAATGTGTAAATTTTCATAATTAATCCAACCACCTGGAT</gDNA_template>
            <first_frame> *  M  A  Y  H  Q  I  F  P  H  *  N  *  G  T  L  I  T  K  K  I  Y  R  L  N  Y  T  R  K  K  V  N  I  *  I  S  F  D  Q  K  R  *  V  F  V  L  E  I  L  F  T  C  P  T  V  W  F  L  K  D  Y  I  K  K  S  K  P  L  P  L  H  I  E  L  Y  I  N  L  Q  A  P  D  N  I  I  T  S  S  F  S  *  N  I  Q  P  H  V  P  S  K  P  K  I  L  S  L  E  N  A  N  F  L  F  S  S  K  C  T  K  N  Q  N  S  I  I  T  T  F  R  R  A  N  R  K  M  V  Q  M  C  K  F  S  *  L  I  Q  P  P  G  </first_frame>
            <second_frame>  K  W  P  I  T  K  S  F  P  T  K  I  E  E  H  *  *  Q  R  R  F  T  D  *  I  I  P  E  R  K  *  T  Y  K  L  V  L  T  R  K  G  K  F  L  F  W  R  Y  Y  S  P  A  Q  Q  C  G  S  *  K  T  I  S  R  N  P  N  P  C  L  C  I  *  S  Y  I  *  I  Y  R  L  P  T  T  S  S  R  A  L  S  L  E  T  F  S  L  M  S  P  Q  N  Q  K  S  F  L  *  K  M  Q  T  F  Y  F  L  L  N  A  P  K  T  K  T  Q  *  S  P  P  S  D  V  Q  T  E  K  W  S  K  C  V  N  F  H  N  *  S  N  H  L  D </second_frame>
            <third_frame>   N  G  L  S  P  N  L  S  P  L  K  L  R  N  T  N  N  K  E  D  L  Q  I  K  L  Y  Q  K  E  S  K  H  I  N  *  F  *  P  E  K  V  S  F  C  S  G  D  I  I  H  L  P  N  S  V  V  L  E  R  L  Y  Q  E  I  Q  T  P  A  F  A  Y  R  V  I  Y  K  S  T  G  S  R  Q  H  H  H  E  L  F  L  L  K  H  S  A  S  C  P  L  K  T  K  N  P  F  F  R  K  C  K  L  S  I  F  F  *  M  H  Q  K  P  K  L  N  N  H  H  L  P  T  C  K  Q  K  N  G  P  N  V  *  I  F  I  I  N  P  T  T  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22390" stop="22157"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEKVSFCSGDIIHLPNSVVLERLYQEIQTPAFAYRVIYKSTGSRQHHHELFLLKHSASCPLKTKNPFFRKCKLSIFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23244" PGL_stop="23816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23244" e_stop="23816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="23244" e_stop="23816" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23244" stop="23813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23255" stop="23816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23255" stop="23809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616989" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGCGACCGCTAGATGAGCAAGAAACAACACAGGTGTTCGAAAAGCTACACAAATTCGTCGGAAACAATCTGAAGAACATAGTGGAAAACCCATCTCACGAAGGTACCGACAACACTCCCGGCCGTTACTGCTTTCGTCTCCAGAGAAACAGAGTTTACTACGTATCAGAATCTCTGGTCAAGCGAGCAACCAACGTAAAGCGAGATAACTTAGTTTCGCTGGGAACCCAGTTAGGGAAATTCACCAAGGGAGGTAAATTTCATCTCACGGTTCAATGCTTGGGTCTCTTAGCTGCACACGCGAAACACAAAGTGTGGCTGAAACCCACGTCTGAGATGAGTTTTCTTTATGGAAATAATGTATTGAAAGGTGGAGTTGGAAGGATTACAGAGAGTATTAGTGATCATGATGGTGTGGTTGTGTTTTCGATGTCGGATGTGCCATTGGGATTTGGGGTTGCAGCGAAGAGTACTCAGGATTGCCGGAAAATGGATCCGAATGGAATTGTAGTGCTTCATCAAGCTGATATTGGAGAGTATTTGAGGATGGAAGATGATCTTTAATTACTG</gDNA_template>
            <first_frame> K  M  R  P  L  D  E  Q  E  T  T  Q  V  F  E  K  L  H  K  F  V  G  N  N  L  K  N  I  V  E  N  P  S  H  E  G  T  D  N  T  P  G  R  Y  C  F  R  L  Q  R  N  R  V  Y  Y  V  S  E  S  L  V  K  R  A  T  N  V  K  R  D  N  L  V  S  L  G  T  Q  L  G  K  F  T  K  G  G  K  F  H  L  T  V  Q  C  L  G  L  L  A  A  H  A  K  H  K  V  W  L  K  P  T  S  E  M  S  F  L  Y  G  N  N  V  L  K  G  G  V  G  R  I  T  E  S  I  S  D  H  D  G  V  V  V  F  S  M  S  D  V  P  L  G  F  G  V  A  A  K  S  T  Q  D  C  R  K  M  D  P  N  G  I  V  V  L  H  Q  A  D  I  G  E  Y  L  R  M  E  D  D  L  *  L  L </first_frame>
            <second_frame>  K  C  D  R  *  M  S  K  K  Q  H  R  C  S  K  S  Y  T  N  S  S  E  T  I  *  R  T  *  W  K  T  H  L  T  K  V  P  T  T  L  P  A  V  T  A  F  V  S  R  E  T  E  F  T  T  Y  Q  N  L  W  S  S  E  Q  P  T  *  S  E  I  T  *  F  R  W  E  P  S  *  G  N  S  P  R  E  V  N  F  I  S  R  F  N  A  W  V  S  *  L  H  T  R  N  T  K  C  G  *  N  P  R  L  R  *  V  F  F  M  E  I  M  Y  *  K  V  E  L  E  G  L  Q  R  V  L  V  I  M  M  V  W  L  C  F  R  C  R  M  C  H  W  D  L  G  L  Q  R  R  V  L  R  I  A  G  K  W  I  R  M  E  L  *  C  F  I  K  L  I  L  E  S  I  *  G  W  K  M  I  F  N  Y   </second_frame>
            <third_frame>   N  A  T  A  R  *  A  R  N  N  T  G  V  R  K  A  T  Q  I  R  R  K  Q  S  E  E  H  S  G  K  P  I  S  R  R  Y  R  Q  H  S  R  P  L  L  L  S  S  P  E  K  Q  S  L  L  R  I  R  I  S  G  Q  A  S  N  Q  R  K  A  R  *  L  S  F  A  G  N  P  V  R  E  I  H  Q  G  R  *  I  S  S  H  G  S  M  L  G  S  L  S  C  T  R  E  T  Q  S  V  A  E  T  H  V  *  D  E  F  S  L  W  K  *  C  I  E  R  W  S  W  K  D  Y  R  E  Y  *  *  S  *  W  C  G  C  V  F  D  V  G  C  A  I  G  I  W  G  C  S  E  E  Y  S  G  L  P  E  N  G  S  E  W  N  C  S  A  S  S  S  *  Y  W  R  V  F  E  D  G  R  *  S  L  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23244" stop="23810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMRPLDEQETTQVFEKLHKFVGNNLKNIVENPSHEGTDNTPGRYCFRLQRNRVYYVSESLVKRATNVKRDNLVSLGTQLGKFTKGGKFHLTVQCLGLLAAHAKHKVWLKPTSEMSFLYGNNVLKGGVGRITESISDHDGVVVFSMSDVPLGFGVAAKSTQDCRKMDPNGIVVLHQADIGEYLRMEDDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="26228" PGL_stop="29311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26228" e_stop="26849"/>
            <exon e_start="27096" e_stop="27147"/>
            <exon e_start="28397" e_stop="28452"/>
            <exon e_start="29242" e_stop="29311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.917"/>
          <exon-intron don_prob="1.000" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.865" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="26228" e_stop="26849" e_length="622"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26850" i_stop="27095" i_length="246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27096" e_stop="27147" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.691">
            <gDNA_intron_boundary i_start="27148" i_stop="28396" i_length="1249"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28397" e_stop="28452" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.921" acc_prob="0.865">
            <gDNA_intron_boundary i_start="28453" i_stop="29241" i_length="789"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29242" e_stop="29311" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26228" stop="26840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26373" stop="26849"/>
              <exon start="27096" stop="27131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26516" stop="26849"/>
              <exon start="27096" stop="27147"/>
              <exon start="28397" stop="28452"/>
              <exon start="29242" stop="29311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26516" stop="26849"/>
              <exon start="27096" stop="27132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATTAGGAATTCGTTTCTGGTTTCTTTCACTTTCACTATCAATAACTATTGTTTTTGTCTTTCCCTTTGATGGGAGTGGTGGAAAAAGTGTCTTTAAAATATGAGATATTTATCTGCTAGCTTTCTTGTGCTGTTTTCATAAAACATTACAGTATTTCTACAGAAGTTTGAAACTTTGCAGTTTGTGGCCATTTGTTGCAAACCATGGCTTCTCTTCTGCATAATTTCTGGGCAGTCCCTCGTTTTGGTCTTAGTCCGGACTATAAGCCTCACTGTATAGCTCGGTTCGCATGCTTAGCTAACAGGGACTCTACATTTTTGTCTTCAGATTCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCACAATAATTGATGTGAAAAATAGTCATCTGGCTCCAGCTATTAAGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTTAAGGATTATCTTGAGATAGGATCAGAGATTATTAAGCCTGATGGAGGTCCTCCGCGGTGGTTTACTCCCATATCAGCTGGCCCTCCTTTGGAAGACTCTCCTCTCCTCCTTTTTCTGCCAG : GAATGGATGGCACTGGCATGGGTCTTGTTTTGCATGAGAAGGCTCTTGGGAA : AGTTTTTCAGGTTTGGTGCTTGCATATTCCTGTGTATGATCGAACACCATTTGATG : AACTGGTGAAATTCGTCGGGAGAACTGTGAGGATGAAGCATGCTTCATCTCCAAACAAGCCAATTTATTT</gDNA_template>
            <first_frame> K  N  *  E  F  V  S  G  F  F  H  F  H  Y  Q  *  L  L  F  L  S  F  P  L  M  G  V  V  E  K  V  S  L  K  Y  E  I  F  I  C  *  L  S  C  A  V  F  I  K  H  Y  S  I  S  T  E  V  *  N  F  A  V  C  G  H  L  L  Q  T  M  A  S  L  L  H  N  F  W  A  V  P  R  F  G  L  S  P  D  Y  K  P  H  C  I  A  R  F  A  C  L  A  N  R  D  S  T  F  L  S  S  D  S  V  I  V  N  G  V  S  S  I  E  E  K  E  K  S  S  T  I  I  D  V  K  N  S  H  L  A  P  A  I  K  E  K  N  K  E  D  I  Q  N  K  L  E  T  L  W  D  D  G  Y  G  T  Q  T  V  K  D  Y  L  E  I  G  S  E  I  I  K  P  D  G  G  P  P  R  W  F  T  P  I  S  A  G  P  P  L  E  D  S  P  L  L  L  F  L  P   : G  M  D  G  T  G  M  G  L  V  L  H  E  K  A  L  G  K :   V  F  Q  V  W  C  L  H  I  P  V  Y  D  R  T  P  F  D   : E  L  V  K  F  V  G  R  T  V  R  M  K  H  A  S  S  P  N  K  P  I  Y   </first_frame>
            <second_frame>  K  I  R  N  S  F  L  V  S  F  T  F  T  I  N  N  Y  C  F  C  L  S  L  *  W  E  W  W  K  K  C  L  *  N  M  R  Y  L  S  A  S  F  L  V  L  F  S  *  N  I  T  V  F  L  Q  K  F  E  T  L  Q  F  V  A  I  C  C  K  P  W  L  L  F  C  I  I  S  G  Q  S  L  V  L  V  L  V  R  T  I  S  L  T  V  *  L  G  S  H  A  *  L  T  G  T  L  H  F  C  L  Q  I  L  L  *  L  M  V  C  P  P  L  K  K  R  R  K  V  A  Q  *  L  M  *  K  I  V  I  W  L  Q  L  L  R  R  R  T  R  R  I  F  K  T  S  W  K  L  F  G  M  M  D  M  E  L  K  L  L  R  I  I  L  R  *  D  Q  R  L  L  S  L  M  E  V  L  R  G  G  L  L  P  Y  Q  L  A  L  L  W  K  T  L  L  S  S  F  F  C  Q  :  E  W  M  A  L  A  W  V  L  F  C  M  R  R  L  L  G   : K  F  F  R  F  G  A  C  I  F  L  C  M  I  E  H  H  L  M  :  N  W  *  N  S  S  G  E  L  *  G  *  S  M  L  H  L  Q  T  S  Q  F  I  </second_frame>
            <third_frame>   K  L  G  I  R  F  W  F  L  S  L  S  L  S  I  T  I  V  F  V  F  P  F  D  G  S  G  G  K  S  V  F  K  I  *  D  I  Y  L  L  A  F  L  C  C  F  H  K  T  L  Q  Y  F  Y  R  S  L  K  L  C  S  L  W  P  F  V  A  N  H  G  F  S  S  A  *  F  L  G  S  P  S  F  W  S  *  S  G  L  *  A  S  L  Y  S  S  V  R  M  L  S  *  Q  G  L  Y  I  F  V  F  R  F  C  Y  S  *  W  C  V  L  H  *  R  K  G  E  K  *  H  N  N  *  C  E  K  *  S  S  G  S  S  Y  *  G  E  E  Q  G  G  Y  S  K  Q  V  G  N  S  L  G  *  W  I  W  N  S  N  C  *  G  L  S  *  D  R  I  R  D  Y  *  A  *  W  R  S  S  A  V  V  Y  S  H  I  S  W  P  S  F  G  R  L  S  S  P  P  F  S  A  R :   N  G  W  H  W  H  G  S  C  F  A  *  E  G  S  W  E  :  S  F  S  G  L  V  L  A  Y  S  C  V  *  S  N  T  I  *  * :   T  G  E  I  R  R  E  N  C  E  D  E  A  C  F  I  S  K  Q  A  N  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26402" stop="26849"/>
                    <exon start="27096" stop="27147"/>
                    <exon start="28397" stop="28452"/>
                    <exon start="29242" stop="29309"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFAVCGHLLQTMASLLHNFWAVPRFGLSPDYKPHCIARFACLANRDSTFLSSDSVIVNGVSSIEEKEKSSTIIDVKNSHLAPAIKEKNKEDIQNKLETLWDDGYGTQTVKDYLEIGSEIIKPDGGPPRWFTPISAGPPLEDSPLLLFLPGMDGTGMGLVLHEKALGKVFQVWCLHIPVYDRTPFDELVKFVGRTVRMKHASSPNKPIY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="34576" PGL_stop="37729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34576" e_stop="34678"/>
            <exon e_start="35402" e_stop="35510"/>
            <exon e_start="36794" e_stop="36924"/>
            <exon e_start="37456" e_stop="37729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="0.990"/>
          <exon-intron don_prob="0.673" acc_prob="0.701" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.806" e_score="0.939"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="34576" e_stop="34678" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="34679" i_stop="35401" i_length="723"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="35402" e_stop="35510" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.673" acc_prob="0.701">
            <gDNA_intron_boundary i_start="35511" i_stop="36793" i_length="1283"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="36794" e_stop="36924" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.806">
            <gDNA_intron_boundary i_start="36925" i_stop="37455" i_length="531"/>
          </intron>
          <exon e_serial="4" e_score="0.960">
            <gDNA_exon_boundary e_start="37456" e_stop="37729" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34576" stop="34678"/>
              <exon start="35402" stop="35510"/>
              <exon start="36794" stop="36924"/>
              <exon start="37456" stop="37729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594301" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAGGAAACTCTTCTCTGGAAGTTGAAGCTTCTAAGATCTGCTTCATCTTATTCAAATTCCCGTCTCCATGCTGTTAATGCTGAAGTACTTGTGATTGCTAG : TGGCAAGGATAACATGCTTCCAAGTGAGAATGAAGCTCAGAGGCTTGGAAATTCATTAAGAAACTGCACAGTACGATACTTCAAAGACAACGGGCATACTATTTTATTG : GAAGATGGTATTAATCTGCTATCCATCATCAAAGCTACTAGCAAATATCGTCGTTCAAAAAGGCGTGATTATGTCAAAGATTTTCTGCCTCCTAGTAAGTCAGAGTTCAAGAACGCAATCAAGAACAATAG : TTGGTATCTCAATATTACTGGACCAGTTATGCTGTCCACGATGGAAAATGGGAAAATTGTTAGAGGTCTAGCGGGGGTCCCACGTGAAGGCCCTGTATTGTTGGTCGGTTATCACATGCTTATGGGTTTAGAAATTGTCCCTCTTGTTCAAGAATATATGATGCAGACGAAAATTTTACTTCGTGGAATAGCACATCCATCGTTGTTTACTCAGCTGGTTGAGAGTCGACCTGATGCAAGCTCATTCATTGATATGCTGAAACTATATGGAGCT</gDNA_template>
            <first_frame> R  R  K  L  F  S  G  S  *  S  F  *  D  L  L  H  L  I  Q  I  P  V  S  M  L  L  M  L  K  Y  L  *  L  L   : V  A  R  I  T  C  F  Q  V  R  M  K  L  R  G  L  E  I  H  *  E  T  A  Q  Y  D  T  S  K  T  T  G  I  L  F  Y  W :   K  M  V  L  I  C  Y  P  S  S  K  L  L  A  N  I  V  V  Q  K  G  V  I  M  S  K  I  F  C  L  L  V  S  Q  S  S  R  T  Q  S  R  T  I   : V  G  I  S  I  L  L  D  Q  L  C  C  P  R  W  K  M  G  K  L  L  E  V  *  R  G  S  H  V  K  A  L  Y  C  W  S  V  I  T  C  L  W  V  *  K  L  S  L  L  F  K  N  I  *  C  R  R  K  F  Y  F  V  E  *  H  I  H  R  C  L  L  S  W  L  R  V  D  L  M  Q  A  H  S  L  I  C  *  N  Y  M  E   </first_frame>
            <second_frame>  E  G  N  S  S  L  E  V  E  A  S  K  I  C  F  I  L  F  K  F  P  S  P  C  C  *  C  *  S  T  C  D  C  *  :  W  Q  G  *  H  A  S  K  *  E  *  S  S  E  A  W  K  F  I  K  K  L  H  S  T  I  L  Q  R  Q  R  A  Y  Y  F  I   : G  R  W  Y  *  S  A  I  H  H  Q  S  Y  *  Q  I  S  S  F  K  K  A  *  L  C  Q  R  F  S  A  S  *  *  V  R  V  Q  E  R  N  Q  E  Q  *  :  L  V  S  Q  Y  Y  W  T  S  Y  A  V  H  D  G  K  W  E  N  C  *  R  S  S  G  G  P  T  *  R  P  C  I  V  G  R  L  S  H  A  Y  G  F  R  N  C  P  S  C  S  R  I  Y  D  A  D  E  N  F  T  S  W  N  S  T  S  I  V  V  Y  S  A  G  *  E  S  T  *  C  K  L  I  H  *  Y  A  E  T  I  W  S  </second_frame>
            <third_frame>   K  E  T  L  L  W  K  L  K  L  L  R  S  A  S  S  Y  S  N  S  R  L  H  A  V  N  A  E  V  L  V  I  A  S :   G  K  D  N  M  L  P  S  E  N  E  A  Q  R  L  G  N  S  L  R  N  C  T  V  R  Y  F  K  D  N  G  H  T  I  L  L  :  E  D  G  I  N  L  L  S  I  I  K  A  T  S  K  Y  R  R  S  K  R  R  D  Y  V  K  D  F  L  P  P  S  K  S  E  F  K  N  A  I  K  N  N  S :   W  Y  L  N  I  T  G  P  V  M  L  S  T  M  E  N  G  K  I  V  R  G  L  A  G  V  P  R  E  G  P  V  L  L  V  G  Y  H  M  L  M  G  L  E  I  V  P  L  V  Q  E  Y  M  M  Q  T  K  I  L  L  R  G  I  A  H  P  S  L  F  T  Q  L  V  E  S  R  P  D  A  S  S  F  I  D  M  L  K  L  Y  G  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34578" stop="34678"/>
                    <exon start="35402" stop="35510"/>
                    <exon start="36794" stop="36924"/>
                    <exon start="37456" stop="37729"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KETLLWKLKLLRSASSYSNSRLHAVNAEVLVIASGKDNMLPSENEAQRLGNSLRNCTVRYFKDNGHTILLEDGINLLSIIKATSKYRRSKRRDYVKDFLPPSKSEFKNAIKNNSWYLNITGPVMLSTMENGKIVRGLAGVPREGPVLLVGYHMLMGLEIVPLVQEYMMQTKILLRGIAHPSLFTQLVESRPDASSFIDMLKLYGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="37742" PGL_stop="41141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37742" e_stop="37825"/>
            <exon e_start="39196" e_stop="39309"/>
            <exon e_start="40490" e_stop="40587"/>
            <exon e_start="40709" e_stop="41141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37742" e_stop="37825" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37826" i_stop="39195" i_length="1370"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39196" e_stop="39309" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="39310" i_stop="40489" i_length="1180"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40490" e_stop="40587" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40588" i_stop="40708" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="40709" e_stop="41141" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37742" stop="37825"/>
              <exon start="39196" stop="39309"/>
              <exon start="40490" stop="40587"/>
              <exon start="40709" stop="41141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39211" stop="39309"/>
              <exon start="40490" stop="40587"/>
              <exon start="40709" stop="41120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39211" stop="39309"/>
              <exon start="40490" stop="40587"/>
              <exon start="40709" stop="41120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39211" stop="39309"/>
              <exon start="40490" stop="40587"/>
              <exon start="40709" stop="41109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39212" stop="39309"/>
              <exon start="40490" stop="40587"/>
              <exon start="40709" stop="41120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39212" stop="39309"/>
              <exon start="40490" stop="40587"/>
              <exon start="40709" stop="41048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39219" stop="39309"/>
              <exon start="40490" stop="40587"/>
              <exon start="40709" stop="41103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40490" stop="40587"/>
              <exon start="40709" stop="41129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330838" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCAGCAACTTTTTTAAGTTGCTTGCAACAAAGTCACATGTTCTGTTGTATCCTGGTGGTGCCCGTGAGGCCTTACATCGTAAG : GGAGAAGAGTACAAGGTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAG : TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAG : GGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTATTATTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAATTTTTTAAAAAATATTTATGTTCCAATATGAGCAAGCTTTCCTTCCACCAATAACTAAG</gDNA_template>
            <first_frame> A  S  N  F  F  K  L  L  A  T  K  S  H  V  L  L  Y  P  G  G  A  R  E  A  L  H  R  K  :  G  E  E  Y  K  V  I  W  P  D  Q  P  E  F  I  R  M  A  A  K  F  G  A  T  I  V  P  F  G  V  V  G  E  D  D  I  A  Q  :  L  V  L  D  Y  D  D  L  K  S  I  P  I  L  G  D  R  I  R  S  E  N  E  E  A  A  R  R  G  L  A  V  R :   A  D  M  D  G  E  I  A  N  Q  M  L  Y  I  P  G  L  L  P  K  I  P  G  R  F  Y  F  F  F  G  K  P  I  H  T  K  G  R  Q  D  L  V  K  D  R  E  K  A  R  E  L  Y  L  Q  V  K  S  E  V  Q  N  N  M  N  Y  L  L  K  K  R  E  E  D  P  Y  R  N  F  I  D  R  T  M  Y  R  A  F  S  A  T  S  G  D  V  P  T  F  D  F  *  M  T  S  *  K  S  D  Y  Y  F  F  G  *  R  L  L  P  I  V  *  F  Y  V  V  I  F  *  K  I  F  M  F  Q  Y  E  Q  A  F  L  P  P  I  T  K </first_frame>
            <second_frame>  P  A  T  F  L  S  C  L  Q  Q  S  H  M  F  C  C  I  L  V  V  P  V  R  P  Y  I  V  R :   E  K  S  T  R  *  Y  G  L  T  N  Q  N  S  S  E  W  L  Q  N  L  V  R  Q  L  C  H  L  G  L  *  E  K  M  I  *  H  S :   *  F  S  T  M  T  T  *  K  V  Y  L  Y  W  V  I  G  *  G  V  R  T  K  R  Q  P  G  G  A  *  Q  S   : G  R  T  W  T  G  R  L  P  T  K  C  C  I  S  L  A  F  Y  L  R  Y  P  V  V  F  T  S  F  L  G  N  Q  F  I  Q  R  E  G  K  T  W  *  K  I  E  K  K  Q  E  N  Y  T  C  R  *  N  L  K  F  K  I  T  *  I  I  C  L  R  K  E  R  R  I  L  T  G  T  S  S  I  E  P  C  I  E  H  F  L  P  L  L  V  M  S  Q  H  L  I  F  R  *  P  V  R  S  P  I  I  I  F  L  G  K  G  S  Y  P  L  F  N  S  M  L  *  F  F  K  K  Y  L  C  S  N  M  S  K  L  S  F  H  Q  *  L   </second_frame>
            <third_frame>   Q  Q  L  F  *  V  A  C  N  K  V  T  C  S  V  V  S  W  W  C  P  *  G  L  T  S  *   : G  R  R  V  Q  G  D  M  A  *  P  T  R  I  H  Q  N  G  C  K  I  W  C  D  N  C  A  I  W  G  C  R  R  R  *  Y  S  T   : V  S  S  R  L  *  R  P  K  K  Y  T  Y  I  G  *  S  D  K  E  *  E  R  R  G  S  Q  E  G  L  S  S  Q  :  G  G  H  G  R  G  D  C  Q  P  N  V  V  Y  P  W  P  F  T  *  D  T  R  S  F  L  L  L  F  W  E  T  N  S  Y  K  G  K  A  R  P  G  E  R  *  R  K  S  K  R  I  I  L  A  G  K  I  *  S  S  K  *  H  E  L  F  A  *  E  K  R  G  G  S  L  P  E  L  H  R  S  N  H  V  *  S  I  F  C  H  F  W  *  C  P  N  I  *  F  L  D  D  Q  L  E  V  R  L  L  F  F  W  V  K  A  L  T  H  C  L  I  L  C  C  N  F  L  K  N  I  Y  V  P  I  *  A  S  F  P  S  T  N  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37742" stop="37825"/>
                    <exon start="39196" stop="39309"/>
                    <exon start="40490" stop="40587"/>
                    <exon start="40709" stop="41009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASNFFKLLATKSHVLLYPGGAREALHRKGEEYKVIWPDQPEFIRMAAKFGATIVPFGVVGEDDIAQLVLDYDDLKSIPILGDRIRSENEEAARRGLAVRADMDGEIANQMLYIPGLLPKIPGRFYFFFGKPIHTKGRQDLVKDREKARELYLQVKSEVQNNMNYLLKKREEDPYRNFIDRTMYRAFSATSGDVPTFDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="42034" PGL_stop="43318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42034" e_stop="43318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42034" e_stop="43318" e_length="1285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42034" stop="42866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42041" stop="42901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42453" stop="43318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42453" stop="43214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAACATAAAGAACCAGTTATATTCTAAATAATAGTTATGGCTAGTTTTAGCAAGGGTGGAAGTTTTAACAGCTATAGTGACTACCCTGATCATGTTTGTCGCCCTGTGATTGTTGGACATAGTGTTGGGGGCTTCATGGTGAGAGCTCAAAGAGTTGTTGAAGTTCGTCGTAGTTATGGAATACCCCTGAATGGTCATGTAGATGAGTACGATGTGCATGAAGAATGGGACGATGATAGTCCAAGGAAAGTCAGTGACTTCTTCCATAAAGTTCATAATGAAGCTAGTCGACCAACTCATTCCACTCTTTTGAGCCCTCCAAAGTTGATCACTGTAAGGCCTAGTTGGACAAGTGAAGATCATGACTCTCCAAAGTATAGGGAGCATCACGATTTTAGTGGCAGCCCTCTTCGTAATAAATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTGTTTCAACCCAATCATCCTATTATCCAACGTCAAATCCGATAACCGAAAGGAAAGAAAGTTACCCTGAACCAACAAAAGGAACGAAGCCTCTGTCTTACCCTGTTTATACAAAACAACCATACTCACCAACTTCAAACTACCCTGAAACAAATCAGGGACCAAGGCCTCTGTTTTCCCCTGGCTACACGCAACAATCGCATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTACCCTGAAACAGCACACGGCACAAAGCCTCTGTTTACCCCTGGCTATACACAACAATCACATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTATCCTGAAACAGAACATGGCGTAAAGCCTTCGTTTTCCTCTGGTTATAAACCACAATTTCATTCACCAACTTCAAACCCAACACCTCAAAGGAAAGAAAGCTATCCTGAA</gDNA_template>
            <first_frame> K  K  T  *  R  T  S  Y  I  L  N  N  S  Y  G  *  F  *  Q  G  W  K  F  *  Q  L  *  *  L  P  *  S  C  L  S  P  C  D  C  W  T  *  C  W  G  L  H  G  E  S  S  K  S  C  *  S  S  S  *  L  W  N  T  P  E  W  S  C  R  *  V  R  C  A  *  R  M  G  R  *  *  S  K  E  S  Q  *  L  L  P  *  S  S  *  *  S  *  S  T  N  S  F  H  S  F  E  P  S  K  V  D  H  C  K  A  *  L  D  K  *  R  S  *  L  S  K  V  *  G  A  S  R  F  *  W  Q  P  S  S  *  *  I  *  R  V  S  P  S  R  *  S  R  I  K  S  V  *  V  Q  E  *  W  L  W  P  L  H  G  F  S  Q  G  W  P  C  E  G  L  W  G  Q  Q  H  M  G  F  T  T  K  I  K  V  N  *  *  R  L  G  W  Q  E  R  S  *  *  L  W  Q  A  K  I  Q  W  R  L  Q  D  N  *  C  S  T  *  P  G  H  K  *  Y  R  Q  D  P  W  G  R  *  *  T  F  G  S  S  Y  L  C  T  K  I  T  F  S  S  I  L  L  N  S  T  Y  K  R  K  L  P  *  E  N  S  R  *  K  A  S  G  F  T  C  F  N  P  I  I  L  L  S  N  V  K  S  D  N  R  K  E  R  K  L  P  *  T  N  K  R  N  E  A  S  V  L  P  C  L  Y  K  T  T  I  L  T  N  F  K  L  P  *  N  K  S  G  T  K  A  S  V  F  P  W  L  H  A  T  I  A  F  T  N  F  K  P  D  T  S  K  E  R  E  L  P  *  N  S  T  R  H  K  A  S  V  Y  P  W  L  Y  T  T  I  T  F  T  N  F  K  P  D  T  S  K  E  R  E  L  S  *  N  R  T  W  R  K  A  F  V  F  L  W  L  *  T  T  I  S  F  T  N  F  K  P  N  T  S  K  E  R  K  L  S  *  </first_frame>
            <second_frame>  K  K  H  K  E  P  V  I  F  *  I  I  V  M  A  S  F  S  K  G  G  S  F  N  S  Y  S  D  Y  P  D  H  V  C  R  P  V  I  V  G  H  S  V  G  G  F  M  V  R  A  Q  R  V  V  E  V  R  R  S  Y  G  I  P  L  N  G  H  V  D  E  Y  D  V  H  E  E  W  D  D  D  S  P  R  K  V  S  D  F  F  H  K  V  H  N  E  A  S  R  P  T  H  S  T  L  L  S  P  P  K  L  I  T  V  R  P  S  W  T  S  E  D  H  D  S  P  K  Y  R  E  H  H  D  F  S  G  S  P  L  R  N  K  F  E  G  F  H  L  Q  G  S  R  G  S  S  P  Y  K  Y  K  N  D  G  Y  G  H  S  M  G  S  P  K  A  G  H  V  K  D  Y  G  V  N  N  T  W  D  S  P  P  R  S  R  L  T  D  D  D  W  D  G  R  R  D  H  D  D  Y  G  K  P  K  F  N  G  G  Y  K  I  T  S  A  P  L  S  Q  A  T  N  D  I  G  K  I  L  G  V  G  S  K  P  L  A  P  P  T  Y  A  P  K  S  H  F  P  A  S  Y  S  T  P  H  I  K  E  S  Y  P  E  R  T  Q  G  E  K  P  L  A  S  P  V  S  T  Q  S  S  Y  Y  P  T  S  N  P  I  T  E  R  K  E  S  Y  P  E  P  T  K  G  T  K  P  L  S  Y  P  V  Y  T  K  Q  P  Y  S  P  T  S  N  Y  P  E  T  N  Q  G  P  R  P  L  F  S  P  G  Y  T  Q  Q  S  H  S  P  T  S  N  P  I  P  Q  R  K  E  N  Y  P  E  T  A  H  G  T  K  P  L  F  T  P  G  Y  T  Q  Q  S  H  S  P  T  S  N  P  I  P  Q  R  K  E  N  Y  P  E  T  E  H  G  V  K  P  S  F  S  S  G  Y  K  P  Q  F  H  S  P  T  S  N  P  T  P  Q  R  K  E  S  Y  P  E </second_frame>
            <third_frame>   K  N  I  K  N  Q  L  Y  S  K  *  *  L  W  L  V  L  A  R  V  E  V  L  T  A  I  V  T  T  L  I  M  F  V  A  L  *  L  L  D  I  V  L  G  A  S  W  *  E  L  K  E  L  L  K  F  V  V  V  M  E  Y  P  *  M  V  M  *  M  S  T  M  C  M  K  N  G  T  M  I  V  Q  G  K  S  V  T  S  S  I  K  F  I  M  K  L  V  D  Q  L  I  P  L  F  *  A  L  Q  S  *  S  L  *  G  L  V  G  Q  V  K  I  M  T  L  Q  S  I  G  S  I  T  I  L  V  A  A  L  F  V  I  N  L  K  G  F  T  F  K  V  V  E  D  Q  V  R  I  S  T  R  M  M  V  M  A  T  P  W  V  L  P  R  L  A  M  *  R  T  M  G  S  T  T  H  G  I  H  H  Q  D  Q  G  *  L  M  T  I  G  M  A  G  E  I  M  M  I  M  A  S  Q  N  S  M  E  V  T  R  *  L  V  L  H  L  A  R  P  Q  M  I  *  A  R  S  L  G  *  V  V  N  L  W  L  L  L  L  M  H  Q  N  H  I  F  Q  H  L  T  Q  L  H  I  *  K  K  V  T  L  R  E  L  K  V  K  S  L  W  L  H  L  F  Q  P  N  H  P  I  I  Q  R  Q  I  R  *  P  K  G  K  K  V  T  L  N  Q  Q  K  E  R  S  L  C  L  T  L  F  I  Q  N  N  H  T  H  Q  L  Q  T  T  L  K  Q  I  R  D  Q  G  L  C  F  P  L  A  T  R  N  N  R  I  H  Q  L  Q  T  R  Y  L  K  G  K  R  T  T  L  K  Q  H  T  A  Q  S  L  C  L  P  L  A  I  H  N  N  H  I  H  Q  L  Q  T  R  Y  L  K  G  K  R  T  I  L  K  Q  N  M  A  *  S  L  R  F  P  L  V  I  N  H  N  F  I  H  Q  L  Q  T  Q  H  L  K  G  K  K  A  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42065" stop="43318"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1254</number_coding_nucleotides>
                  <number_encoded_amino_acids>418</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIVMASFSKGGSFNSYSDYPDHVCRPVIVGHSVGGFMVRAQRVVEVRRSYGIPLNGHVDEYDVHEEWDDDSPRKVSDFFHKVHNEASRPTHSTLLSPPKLITVRPSWTSEDHDSPKYREHHDFSGSPLRNKFEGFHLQGSRGSSPYKYKNDGYGHSMGSPKAGHVKDYGVNNTWDSPPRSRLTDDDWDGRRDHDDYGKPKFNGGYKITSAPLSQATNDIGKILGVGSKPLAPPTYAPKSHFPASYSTPHIKESYPERTQGEKPLASPVSTQSSYYPTSNPITERKESYPEPTKGTKPLSYPVYTKQPYSPTSNYPETNQGPRPLFSPGYTQQSHSPTSNPIPQRKENYPETAHGTKPLFTPGYTQQSHSPTSNPIPQRKENYPETEHGVKPSFSSGYKPQFHSPTSNPTPQRKESYPE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="43828" PGL_stop="43180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43828" e_stop="43518"/>
            <exon e_start="43415" e_stop="43180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.728" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43828" e_stop="43518" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.728">
            <gDNA_intron_boundary i_start="43517" i_stop="43416" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43415" e_stop="43180" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43828" stop="43518"/>
              <exon start="43415" stop="43180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330836" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTCATGATCAGGGTAGCTTTGTTTCATATCAGGTGTTGAGTGTGATGTTGGAGGGTGTGGTTGTTGCTTAGAAGGAGAGGAAAACAGAGATGTCCAACCTTTTTTCTTCTTTGGGTGACTTTCGTTGTTTTGAGAGGTCGGATTTTCAGTTGATTGTTGTGTAGAAACAGGGGAAAACATAGGGTTTGTATCGTGTGTTCTTTCTGGGTAGCTTTCTTTCCTTTGAGGTGTTGGGTTTGAAGTTGGTGAATGTGATTGTGGTTTATAACCAGTGGAAAACAAAGGCTTCACGCTGTGTTCTTTTTCAG : GATAGCTTTCTTTCCTTTGAGGTGTTGGGTTTGAAGTTGGTGAATGTGATTGTGGTTTATAACCAGTGGAAAACCAAGGCTTTACGCCGTGTTCTGTTTCAGGATAGCTTTCTTTCCTTTGAGGTGTTGGGTTTGAAGTTGGTGAATGAAATTGTGGTTTATAACCAGAGGAAAACGAAGGCTTTACGCCATGTTCTGTTTCAGGATAGTTCTCTTTCCTTTGAGGTATCGGGTTT</gDNA_template>
            <first_frame> S  F  M  I  R  V  A  L  F  H  I  R  C  *  V  *  C  W  R  V  W  L  L  L  R  R  R  G  K  Q  R  C  P  T  F  F  L  L  W  V  T  F  V  V  L  R  G  R  I  F  S  *  L  L  C  R  N  R  G  K  H  R  V  C  I  V  C  S  F  W  V  A  F  F  P  L  R  C  W  V  *  S  W  *  M  *  L  W  F  I  T  S  G  K  Q  R  L  H  A  V  F  F  F  R :   I  A  F  F  P  L  R  C  W  V  *  S  W  *  M  *  L  W  F  I  T  S  G  K  P  R  L  Y  A  V  F  C  F  R  I  A  F  F  P  L  R  C  W  V  *  S  W  *  M  K  L  W  F  I  T  R  G  K  R  R  L  Y  A  M  F  C  F  R  I  V  L  F  P  L  R  Y  R  V  </first_frame>
            <second_frame>  V  S  *  S  G  *  L  C  F  I  S  G  V  E  C  D  V  G  G  C  G  C  C  L  E  G  E  E  N  R  D  V  Q  P  F  F  F  F  G  *  L  S  L  F  *  E  V  G  F  S  V  D  C  C  V  E  T  G  E  N  I  G  F  V  S  C  V  L  S  G  *  L  S  F  L  *  G  V  G  F  E  V  G  E  C  D  C  G  L  *  P  V  E  N  K  G  F  T  L  C  S  F  S   : G  *  L  S  F  L  *  G  V  G  F  E  V  G  E  C  D  C  G  L  *  P  V  E  N  Q  G  F  T  P  C  S  V  S  G  *  L  S  F  L  *  G  V  G  F  E  V  G  E  *  N  C  G  L  *  P  E  E  N  E  G  F  T  P  C  S  V  S  G  *  F  S  F  L  *  G  I  G  F </second_frame>
            <third_frame>   F  H  D  Q  G  S  F  V  S  Y  Q  V  L  S  V  M  L  E  G  V  V  V  A  *  K  E  R  K  T  E  M  S  N  L  F  S  S  L  G  D  F  R  C  F  E  R  S  D  F  Q  L  I  V  V  *  K  Q  G  K  T  *  G  L  Y  R  V  F  F  L  G  S  F  L  S  F  E  V  L  G  L  K  L  V  N  V  I  V  V  Y  N  Q  W  K  T  K  A  S  R  C  V  L  F  Q  :  D  S  F  L  S  F  E  V  L  G  L  K  L  V  N  V  I  V  V  Y  N  Q  W  K  T  K  A  L  R  R  V  L  F  Q  D  S  F  L  S  F  E  V  L  G  L  K  L  V  N  E  I  V  V  Y  N  Q  R  K  T  K  A  L  R  H  V  L  F  Q  D  S  S  L  S  F  E  V  S  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43643" stop="43518"/>
                    <exon start="43415" stop="43182"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLYRVFFLGSFLSFEVLGLKLVNVIVVYNQWKTKASRCVLFQDSFLSFEVLGLKLVNVIVVYNQWKTKALRRVLFQDSFLSFEVLGLKLVNEIVVYNQRKTKALRHVLFQDSSLSFEVSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="47516" PGL_stop="48725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47516" e_stop="48725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="47516" e_stop="48725" e_length="1210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47516" stop="48236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47516" stop="48128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47743" stop="48395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47744" stop="48263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48059" stop="48725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543662" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCCAAATGTTGATCCTTATGGATACTTGGGAATTATTTTCAACACTGATGGCTCTATCACACGTTTCCAAATCCCACCTCGTCCATTTTTTACTACTATTCCTGATCATGATCCCTCTGTCTTTATAAAAGATCTTGTCATTAACCCTGTGAAAGACACGTGGGCTCGTATTATCATCCCTCGTGAAGTACTCAACTCGGAAAATAAACTACCTCTTGTAGTATATTTTCATGGTGGAGGATTTGTAATGGCAATTACTGTAAACACACCGATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCAATAATTGTATCGGTTGATTACCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACAACGTAGGACTACGTGTAGCTGGAGTTGGTGAAAATCTTAAGCCTTTAGAAATCAAAGGGTTAATTTTATATCATAGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGATTAGCTCACGATAAGATGCTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTAGGGTTGCCTATTGGTAGCGATCGCGATCATCCATATTGTAATCCGATGGTGGAGATTCGATCAAATGAAAATTTGTTTGATCAAGTGAAAATACAAGGTTGGAAGATTCTGATCATTGACTGTGATGGTGATCCTTTGGTCGATCGACAGATTGAGTTTTCAAAGATGTTGAAGGCAAAAGGTGTGCAAGTTGTGGATTGTTTTAGTGAAGGAGGATTTCATGGTTGTGAGTATTTTGATGGCATGAAGTTGAAGGAATTGACCCTTGTTGTAAAGGAATTTATGAGAAGTAATTAATTAAAGTACTTGTGGCAAGTGATCTTTAATTTGAAAGAAATATTTGTAACAATTATGAAAATAGGAGTCCACTCTCAGAGCTATACTCTGAGATAAAAGAAGAAGCACTGTTTAGATTTCGAGTTCTACAGTTTCAAATAAGTTGTGAAGTATCGTCATATATATATCTCAAATGTACTACTTAGAGCAGATATACCCTTTGTTTAAAAAGTGAAGCAAATATATCCTTGTTCTACTTGTACATAA</gDNA_template>
            <first_frame> *  S  K  C  *  S  L  W  I  L  G  N  Y  F  Q  H  *  W  L  Y  H  T  F  P  N  P  T  S  S  I  F  Y  Y  Y  S  *  S  *  S  L  C  L  Y  K  R  S  C  H  *  P  C  E  R  H  V  G  S  Y  Y  H  P  S  *  S  T  Q  L  G  K  *  T  T  S  C  S  I  F  S  W  W  R  I  C  N  G  N  Y  C  K  H  T  D  F  T  K  I  L  C  N  T  C  G  *  N  S  S  N  N  C  I  G  *  L  P  I  R  P  R  K  S  T  P  S  S  V  *  *  L  C  G  I  V  I  L  D  Q  K  Y  P  *  R  A  V  E  K  I  C  *  F  F  K  V  F  S  I  G  H  *  F  W  W  Q  H  S  V  Q  R  R  T  T  C  S  W  S  W  *  K  S  *  A  F  R  N  Q  R  V  N  F  I  S  *  S  F  W  W  K  *  E  D  K  I  G  I  K  I  S  S  R  *  D  A  A  P  *  C  E  *  Y  Y  V  G  A  R  V  A  Y  W  *  R  S  R  S  S  I  L  *  S  D  G  G  D  S  I  K  *  K  F  V  *  S  S  E  N  T  R  L  E  D  S  D  H  *  L  *  W  *  S  F  G  R  S  T  D  *  V  F  K  D  V  E  G  K  R  C  A  S  C  G  L  F  *  *  R  R  I  S  W  L  *  V  F  *  W  H  E  V  E  G  I  D  P  C  C  K  G  I  Y  E  K  *  L  I  K  V  L  V  A  S  D  L  *  F  E  R  N  I  C  N  N  Y  E  N  R  S  P  L  S  E  L  Y  S  E  I  K  E  E  A  L  F  R  F  R  V  L  Q  F  Q  I  S  C  E  V  S  S  Y  I  Y  L  K  C  T  T  *  S  R  Y  T  L  C  L  K  S  E  A  N  I  S  L  F  Y  L  Y  I  </first_frame>
            <second_frame>  D  P  N  V  D  P  Y  G  Y  L  G  I  I  F  N  T  D  G  S  I  T  R  F  Q  I  P  P  R  P  F  F  T  T  I  P  D  H  D  P  S  V  F  I  K  D  L  V  I  N  P  V  K  D  T  W  A  R  I  I  I  P  R  E  V  L  N  S  E  N  K  L  P  L  V  V  Y  F  H  G  G  G  F  V  M  A  I  T  V  N  T  P  I  L  Q  K  F  C  A  T  L  A  V  E  I  P  A  I  I  V  S  V  D  Y  R  Y  A  P  E  N  R  L  P  A  A  Y  D  D  C  V  E  S  L  Y  W  I  K  N  T  P  N  E  L  L  K  K  Y  A  D  F  S  K  C  F  L  L  G  T  S  S  G  G  N  I  A  Y  N  V  G  L  R  V  A  G  V  G  E  N  L  K  P  L  E  I  K  G  L  I  L  Y  H  S  L  F  G  G  N  E  R  T  K  S  E  L  R  L  A  H  D  K  M  L  P  L  N  V  S  D  I  M  W  E  L  G  L  P  I  G  S  D  R  D  H  P  Y  C  N  P  M  V  E  I  R  S  N  E  N  L  F  D  Q  V  K  I  Q  G  W  K  I  L  I  I  D  C  D  G  D  P  L  V  D  R  Q  I  E  F  S  K  M  L  K  A  K  G  V  Q  V  V  D  C  F  S  E  G  G  F  H  G  C  E  Y  F  D  G  M  K  L  K  E  L  T  L  V  V  K  E  F  M  R  S  N  *  L  K  Y  L  W  Q  V  I  F  N  L  K  E  I  F  V  T  I  M  K  I  G  V  H  S  Q  S  Y  T  L  R  *  K  K  K  H  C  L  D  F  E  F  Y  S  F  K  *  V  V  K  Y  R  H  I  Y  I  S  N  V  L  L  R  A  D  I  P  F  V  *  K  V  K  Q  I  Y  P  C  S  T  C  T  * </second_frame>
            <third_frame>   I  Q  M  L  I  L  M  D  T  W  E  L  F  S  T  L  M  A  L  S  H  V  S  K  S  H  L  V  H  F  L  L  L  F  L  I  M  I  P  L  S  L  *  K  I  L  S  L  T  L  *  K  T  R  G  L  V  L  S  S  L  V  K  Y  S  T  R  K  I  N  Y  L  L  *  Y  I  F  M  V  E  D  L  *  W  Q  L  L  *  T  H  R  F  Y  K  N  F  V  Q  H  L  R  L  K  F  Q  Q  *  L  Y  R  L  I  T  D  T  P  P  K  I  D  S  Q  Q  R  M  M  I  V  W  N  R  Y  I  G  S  K  I  P  L  T  S  C  *  K  N  M  L  I  F  Q  S  V  F  Y  W  A  L  V  L  V  A  T  *  R  T  T  *  D  Y  V  *  L  E  L  V  K  I  L  S  L  *  K  S  K  G  *  F  Y  I  I  V  F  L  V  E  M  R  G  Q  N  R  N  *  D  *  L  T  I  R  C  C  P  L  M  *  V  I  L  C  G  S  *  G  C  L  L  V  A  I  A  I  I  H  I  V  I  R  W  W  R  F  D  Q  M  K  I  C  L  I  K  *  K  Y  K  V  G  R  F  *  S  L  T  V  M  V  I  L  W  S  I  D  R  L  S  F  Q  R  C  *  R  Q  K  V  C  K  L  W  I  V  L  V  K  E  D  F  M  V  V  S  I  L  M  A  *  S  *  R  N  *  P  L  L  *  R  N  L  *  E  V  I  N  *  S  T  C  G  K  *  S  L  I  *  K  K  Y  L  *  Q  L  *  K  *  E  S  T  L  R  A  I  L  *  D  K  R  R  S  T  V  *  I  S  S  S  T  V  S  N  K  L  *  S  I  V  I  Y  I  S  Q  M  Y  Y  L  E  Q  I  Y  P  L  F  K  K  *  S  K  Y  I  L  V  L  L  V  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47517" stop="48479"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPNVDPYGYLGIIFNTDGSITRFQIPPRPFFTTIPDHDPSVFIKDLVINPVKDTWARIIIPREVLNSENKLPLVVYFHGGGFVMAITVNTPILQKFCATLAVEIPAIIVSVDYRYAPENRLPAAYDDCVESLYWIKNTPNELLKKYADFSKCFLLGTSSGGNIAYNVGLRVAGVGENLKPLEIKGLILYHSLFGGNERTKSELRLAHDKMLPLNVSDIMWELGLPIGSDRDHPYCNPMVEIRSNENLFDQVKIQGWKILIIDCDGDPLVDRQIEFSKMLKAKGVQVVDCFSEGGFHGCEYFDGMKLKELTLVVKEFMRSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="48821" PGL_stop="49466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48821" e_stop="49466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="48821" e_stop="49466" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48821" stop="49466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428754" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGCAAAGTCTTGTGCTTTTCTCAAACTTTATAGACCAGAGAAAAGAATTTTTGTTAAACTGATTGATCAAAAGTTCTTTACATGGTGTAAATACATTCTAATTGTTGTATATCTAACAACAGGTTTAAAAATATTAGCTACAAAAATCTTGAAAACAACAATGTAAGACTACAGCTAAAAATATCAAAATATCTCTTTTCTCAGCACCAATTATCCCCGCACGAGCATTTACCATTTACAAAATGATGAAAACCTGAAGCGTCTCTTACGTGTATATCTCTCTTGGTGATAACAGAAACATATTTGAAGAATGTATGGCAGTCACCACAGAGAAGCACATTCTTCATAACGCGAACAGGTTTTCCAGGTCTAGTCATAAGAAGCCCAAAGGTTACAGATAGTTTTGCACTGTGGTAGAACAAGAAGTCTTTCTTCTGATGCTCCTCTACTTCATGAAGCACAAGACTTGTATCAGGTACATATCCAGCTTTCAGACACTCCAAAATAAGTATTTGTAAGCCACTGTATATGTCTTTTGACTGTGAATGCAATTTGTCTCTAGCAAAGAAGGAGTGAACCTTGTCGCCAAATATGATCCAGCTGCGTCCTGGTATTTTTGGATACCCTTCTCCCTCATCTCCGCC</gDNA_template>
            <first_frame> D  A  K  S  C  A  F  L  K  L  Y  R  P  E  K  R  I  F  V  K  L  I  D  Q  K  F  F  T  W  C  K  Y  I  L  I  V  V  Y  L  T  T  G  L  K  I  L  A  T  K  I  L  K  T  T  M  *  D  Y  S  *  K  Y  Q  N  I  S  F  L  S  T  N  Y  P  R  T  S  I  Y  H  L  Q  N  D  E  N  L  K  R  L  L  R  V  Y  L  S  W  *  *  Q  K  H  I  *  R  M  Y  G  S  H  H  R  E  A  H  S  S  *  R  E  Q  V  F  Q  V  *  S  *  E  A  Q  R  L  Q  I  V  L  H  C  G  R  T  R  S  L  S  S  D  A  P  L  L  H  E  A  Q  D  L  Y  Q  V  H  I  Q  L  S  D  T  P  K  *  V  F  V  S  H  C  I  C  L  L  T  V  N  A  I  C  L  *  Q  R  R  S  E  P  C  R  Q  I  *  S  S  C  V  L  V  F  L  D  T  L  L  P  H  L  R  </first_frame>
            <second_frame>  M  Q  S  L  V  L  F  S  N  F  I  D  Q  R  K  E  F  L  L  N  *  L  I  K  S  S  L  H  G  V  N  T  F  *  L  L  Y  I  *  Q  Q  V  *  K  Y  *  L  Q  K  S  *  K  Q  Q  C  K  T  T  A  K  N  I  K  I  S  L  F  S  A  P  I  I  P  A  R  A  F  T  I  Y  K  M  M  K  T  *  S  V  S  Y  V  Y  I  S  L  G  D  N  R  N  I  F  E  E  C  M  A  V  T  T  E  K  H  I  L  H  N  A  N  R  F  S  R  S  S  H  K  K  P  K  G  Y  R  *  F  C  T  V  V  E  Q  E  V  F  L  L  M  L  L  Y  F  M  K  H  K  T  C  I  R  Y  I  S  S  F  Q  T  L  Q  N  K  Y  L  *  A  T  V  Y  V  F  *  L  *  M  Q  F  V  S  S  K  E  G  V  N  L  V  A  K  Y  D  P  A  A  S  W  Y  F  W  I  P  F  S  L  I  S  A </second_frame>
            <third_frame>   C  K  V  L  C  F  S  Q  T  L  *  T  R  E  K  N  F  C  *  T  D  *  S  K  V  L  Y  M  V  *  I  H  S  N  C  C  I  S  N  N  R  F  K  N  I  S  Y  K  N  L  E  N  N  N  V  R  L  Q  L  K  I  S  K  Y  L  F  S  Q  H  Q  L  S  P  H  E  H  L  P  F  T  K  *  *  K  P  E  A  S  L  T  C  I  S  L  L  V  I  T  E  T  Y  L  K  N  V  W  Q  S  P  Q  R  S  T  F  F  I  T  R  T  G  F  P  G  L  V  I  R  S  P  K  V  T  D  S  F  A  L  W  *  N  K  K  S  F  F  *  C  S  S  T  S  *  S  T  R  L  V  S  G  T  Y  P  A  F  R  H  S  K  I  S  I  C  K  P  L  Y  M  S  F  D  C  E  C  N  L  S  L  A  K  K  E  *  T  L  S  P  N  M  I  Q  L  R  P  G  I  F  G  Y  P  S  P  S  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0123A07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="49839" PGL_stop="48976"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49839" e_stop="48976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="49839" e_stop="48976" e_length="864"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49839" stop="48976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49839" stop="49067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGTCCTTGTGATATCAGCTTATAGACACACTTCCACAAATTTAGTTGATTGTTGCCAAAAGTTCTTTTCCTCTATGCAATCCTCATATAACGTAAACCCCACCTCGGAGCATTATGCAGGTTTTGTAGGTGTCTTAGGCTATTGGGGTCTGCTCGAAGAAGCAGAAAAGATAATTAATGCAATGCCGTTTGAACCAAAGGCTTCTGTTTGGCATGCTTTGCTTGATGGTTGTAGGTTACATGTGAATGCTATCATTGGAAAAAGGGCCATGAAGAATATACTTTCCATTGTCCCACAGGATCCTTCTACTTTCATACTAAAGTCAAATCTTTACTCAGCATCTGGAAGATGGCAGTGTTCGGAACTTGTTAGGGCGGAGATGAGGGAGAAGGGTATCCAAAAATACCAGGACGCAGCTGGATCATATTTGGCGACAAGGTTCACTCCTTCTTTGCTAGAGACAAATTGCATTCACAGTCAAAAGACATATACAGTGGCTTACAAATACTTATTTTGGAGTGTCTGAAAGCTGGATATGTACCTGATACAAGTCTTGTGCTTCATGAAGTAGAGGAGCATCAGAAGAAAGACTTCTTGTTCTACCACAGTGCAAAACTATCTGTAACCTTTGGGCTTCTTATGACTAGACCTGGAAAACCTGTTCGCGTTATGAAGAATGTGCTTCTCTGTGGTGACTGCCATACATTCTTCAAATATGTTTCTGTTATCACCAAGAGAGATATACACGTAAGAGACGCTTCAGGTTTTCATCATTTTGTAAATGGTAAATGCTCGTGCGGGGATAATTGGTGCTGAGAAAAGAGATATTTTGATATTTTTAGCTGTAGTCTTACATTGTTGTT</gDNA_template>
            <first_frame> V  S  L  *  Y  Q  L  I  D  T  L  P  Q  I  *  L  I  V  A  K  S  S  F  P  L  C  N  P  H  I  T  *  T  P  P  R  S  I  M  Q  V  L  *  V  S  *  A  I  G  V  C  S  K  K  Q  K  R  *  L  M  Q  C  R  L  N  Q  R  L  L  F  G  M  L  C  L  M  V  V  G  Y  M  *  M  L  S  L  E  K  G  P  *  R  I  Y  F  P  L  S  H  R  I  L  L  L  S  Y  *  S  Q  I  F  T  Q  H  L  E  D  G  S  V  R  N  L  L  G  R  R  *  G  R  R  V  S  K  N  T  R  T  Q  L  D  H  I  W  R  Q  G  S  L  L  L  C  *  R  Q  I  A  F  T  V  K  R  H  I  Q  W  L  T  N  T  Y  F  G  V  S  E  S  W  I  C  T  *  Y  K  S  C  A  S  *  S  R  G  A  S  E  E  R  L  L  V  L  P  Q  C  K  T  I  C  N  L  W  A  S  Y  D  *  T  W  K  T  C  S  R  Y  E  E  C  A  S  L  W  *  L  P  Y  I  L  Q  I  C  F  C  Y  H  Q  E  R  Y  T  R  K  R  R  F  R  F  S  S  F  C  K  W  *  M  L  V  R  G  *  L  V  L  R  K  E  I  F  *  Y  F  *  L  *  S  Y  I  V  V </first_frame>
            <second_frame>  C  P  C  D  I  S  L  *  T  H  F  H  K  F  S  *  L  L  P  K  V  L  F  L  Y  A  I  L  I  *  R  K  P  H  L  G  A  L  C  R  F  C  R  C  L  R  L  L  G  S  A  R  R  S  R  K  D  N  *  C  N  A  V  *  T  K  G  F  C  L  A  C  F  A  *  W  L  *  V  T  C  E  C  Y  H  W  K  K  G  H  E  E  Y  T  F  H  C  P  T  G  S  F  Y  F  H  T  K  V  K  S  L  L  S  I  W  K  M  A  V  F  G  T  C  *  G  G  D  E  G  E  G  Y  P  K  I  P  G  R  S  W  I  I  F  G  D  K  V  H  S  F  F  A  R  D  K  L  H  S  Q  S  K  D  I  Y  S  G  L  Q  I  L  I  L  E  C  L  K  A  G  Y  V  P  D  T  S  L  V  L  H  E  V  E  E  H  Q  K  K  D  F  L  F  Y  H  S  A  K  L  S  V  T  F  G  L  L  M  T  R  P  G  K  P  V  R  V  M  K  N  V  L  L  C  G  D  C  H  T  F  F  K  Y  V  S  V  I  T  K  R  D  I  H  V  R  D  A  S  G  F  H  H  F  V  N  G  K  C  S  C  G  D  N  W  C  *  E  K  R  Y  F  D  I  F  S  C  S  L  T  L  L   </second_frame>
            <third_frame>   V  L  V  I  S  A  Y  R  H  T  S  T  N  L  V  D  C  C  Q  K  F  F  S  S  M  Q  S  S  Y  N  V  N  P  T  S  E  H  Y  A  G  F  V  G  V  L  G  Y  W  G  L  L  E  E  A  E  K  I  I  N  A  M  P  F  E  P  K  A  S  V  W  H  A  L  L  D  G  C  R  L  H  V  N  A  I  I  G  K  R  A  M  K  N  I  L  S  I  V  P  Q  D  P  S  T  F  I  L  K  S  N  L  Y  S  A  S  G  R  W  Q  C  S  E  L  V  R  A  E  M  R  E  K  G  I  Q  K  Y  Q  D  A  A  G  S  Y  L  A  T  R  F  T  P  S  L  L  E  T  N  C  I  H  S  Q  K  T  Y  T  V  A  Y  K  Y  L  F  W  S  V  *  K  L  D  M  Y  L  I  Q  V  L  C  F  M  K  *  R  S  I  R  R  K  T  S  C  S  T  T  V  Q  N  Y  L  *  P  L  G  F  L  *  L  D  L  E  N  L  F  A  L  *  R  M  C  F  S  V  V  T  A  I  H  S  S  N  M  F  L  L  S  P  R  E  I  Y  T  *  E  T  L  Q  V  F  I  I  L  *  M  V  N  A  R  A  G  I  I  G  A  E  K  R  D  I  L  I  F  L  A  V  V  L  H  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49837" stop="49313"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLVISAYRHTSTNLVDCCQKFFSSMQSSYNVNPTSEHYAGFVGVLGYWGLLEEAEKIINAMPFEPKASVWHALLDGCRLHVNAIIGKRAMKNILSIVPQDPSTFILKSNLYSASGRWQCSELVRAEMREKGIQKYQDAAGSYLATRFTPSLLETNCIHSQKTYTVAYKYLFWSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49466" stop="49023"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGDEGEGYPKIPGRSWIIFGDKVHSFFARDKLHSQSKDIYSGLQILILECLKAGYVPDTSLVLHEVEEHQKKDFLFYHSAKLSVTFGLLMTRPGKPVRVMKNVLLCGDCHTFFKYVSVITKRDIHVRDASGFHHFVNGKCSCGDNWC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="50794" PGL_stop="50104"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50794" e_stop="50104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="50794" e_stop="50104" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50794" stop="50104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50794" stop="50141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481015" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCACAGGCATGCTCTTAAACGAGGATTTCATGGCAATTTGAGTGTGAATAATGCACTTATAGGCTTTTACACTAAGTGTGGAACCTTGAAGAATGTAGTGGATGTGTTTGAGAGGATGCCTGTAAAGGATGTCTTTAGTTGGACTGAAATGATTGTGGCATATATGGAATTTGGGCACGTTGATTTGGCGATGGAGATTTTTAACAGTATGCCTGAGAGAAATTCTGTTTCTTATAATGCTCTTTTGGCTGGATTTAGTCAAAATCATGAAGGGTTTAAGGCACTGGCGTTGTTTTGTAGAATGTTGGAGGGAGGAATGGAGTTGACAGATTTTACATTGACCAGTGTTGTTAATGCTTGTGGTTCAGTGATGGAGAGGAAGATAAGCGAACAGATTCATGCGTTTATCCTCAAGTGTGGTTTAAAATCAAATGATCGTATTGAGACGTCATTGATTGATATGTGCACGCGGTGTGGGAGAATGGATGATGCTGAAAAGCTATTTGATGATCTGCCACTTGATCATGATAATTCAATTGCACTGACATCAATGATATGTGCATATGCTAGAAATGGACAACCAGAAGAAGCTATTTCTCTGTTCTTGGTTAGACATTCAGAAAAATCACTAGTTGTTGATGAAGTTGCATTGGCCACTATTCTCGGTGTTTGTGGAACACTAGGGATTC</gDNA_template>
            <first_frame> L  H  R  H  A  L  K  R  G  F  H  G  N  L  S  V  N  N  A  L  I  G  F  Y  T  K  C  G  T  L  K  N  V  V  D  V  F  E  R  M  P  V  K  D  V  F  S  W  T  E  M  I  V  A  Y  M  E  F  G  H  V  D  L  A  M  E  I  F  N  S  M  P  E  R  N  S  V  S  Y  N  A  L  L  A  G  F  S  Q  N  H  E  G  F  K  A  L  A  L  F  C  R  M  L  E  G  G  M  E  L  T  D  F  T  L  T  S  V  V  N  A  C  G  S  V  M  E  R  K  I  S  E  Q  I  H  A  F  I  L  K  C  G  L  K  S  N  D  R  I  E  T  S  L  I  D  M  C  T  R  C  G  R  M  D  D  A  E  K  L  F  D  D  L  P  L  D  H  D  N  S  I  A  L  T  S  M  I  C  A  Y  A  R  N  G  Q  P  E  E  A  I  S  L  F  L  V  R  H  S  E  K  S  L  V  V  D  E  V  A  L  A  T  I  L  G  V  C  G  T  L  G  I  </first_frame>
            <second_frame>  F  T  G  M  L  L  N  E  D  F  M  A  I  *  V  *  I  M  H  L  *  A  F  T  L  S  V  E  P  *  R  M  *  W  M  C  L  R  G  C  L  *  R  M  S  L  V  G  L  K  *  L  W  H  I  W  N  L  G  T  L  I  W  R  W  R  F  L  T  V  C  L  R  E  I  L  F  L  I  M  L  F  W  L  D  L  V  K  I  M  K  G  L  R  H  W  R  C  F  V  E  C  W  R  E  E  W  S  *  Q  I  L  H  *  P  V  L  L  M  L  V  V  Q  *  W  R  G  R  *  A  N  R  F  M  R  L  S  S  S  V  V  *  N  Q  M  I  V  L  R  R  H  *  L  I  C  A  R  G  V  G  E  W  M  M  L  K  S  Y  L  M  I  C  H  L  I  M  I  I  Q  L  H  *  H  Q  *  Y  V  H  M  L  E  M  D  N  Q  K  K  L  F  L  C  S  W  L  D  I  Q  K  N  H  *  L  L  M  K  L  H  W  P  L  F  S  V  F  V  E  H  *  G  F </second_frame>
            <third_frame>   S  Q  A  C  S  *  T  R  I  S  W  Q  F  E  C  E  *  C  T  Y  R  L  L  H  *  V  W  N  L  E  E  C  S  G  C  V  *  E  D  A  C  K  G  C  L  *  L  D  *  N  D  C  G  I  Y  G  I  W  A  R  *  F  G  D  G  D  F  *  Q  Y  A  *  E  K  F  C  F  L  *  C  S  F  G  W  I  *  S  K  S  *  R  V  *  G  T  G  V  V  L  *  N  V  G  G  R  N  G  V  D  R  F  Y  I  D  Q  C  C  *  C  L  W  F  S  D  G  E  E  D  K  R  T  D  S  C  V  Y  P  Q  V  W  F  K  I  K  *  S  Y  *  D  V  I  D  *  Y  V  H  A  V  W  E  N  G  *  C  *  K  A  I  *  *  S  A  T  *  S  *  *  F  N  C  T  D  I  N  D  M  C  I  C  *  K  W  T  T  R  R  S  Y  F  S  V  L  G  *  T  F  R  K  I  T  S  C  *  *  S  C  I  G  H  Y  S  R  C  L  W  N  T  R  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50794" stop="50105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHRHALKRGFHGNLSVNNALIGFYTKCGTLKNVVDVFERMPVKDVFSWTEMIVAYMEFGHVDLAMEIFNSMPERNSVSYNALLAGFSQNHEGFKALALFCRMLEGGMELTDFTLTSVVNACGSVMERKISEQIHAFILKCGLKSNDRIETSLIDMCTRCGRMDDAEKLFDDLPLDHDNSIALTSMICAYARNGQPEEAISLFLVRHSEKSLVVDEVALATILGVCGTLGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="53179" PGL_stop="52421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53179" e_stop="52421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="53179" e_stop="52421" e_length="759"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53179" stop="52551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588547" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52892" stop="52526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52828" stop="52425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52797" stop="52421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCGCCTAATCACTCACGCAAATGCAAAGAGCAAGAGTGAGAAGTTTCCCCCACCACACCAGGACGGAGGACTTGGCGTTCCCTTGGGTGCTTCACATCACATTGATCCGTCCCTTGTCCCTCCGGATGTGCCATTCAGTTCGACCTCATTCACATATTCAAAAGAACCTGTCCAGAATTGGTCAGGCCCTTTAGTAGAGCCTGCTTCAGCTGGTGGAAGGCGGAAGAAGCATACTGCAGGCGATGCCAAAAAGCATTTGTCAAAGAGAAGATGAGAAGCAACCTTGTTTTGGGTAGCAGCAGAGCGAGAGCTTCAGATGAGTGTTTCTATGGCCTATTCTGGAAATAACATTAAAAGTGGGGGGCTGGCCATGGCAACACTTTGAAGCATTTTGTTATTAATGCATCTTCCAGAGAAGGGTTTATAGTAATGCCCAGAGCGAAGCATTGCTTTCCTTTTCCATTTCCAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGCGTGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTTACATCTATATTTGACCGGTGTAATTGCATCTCCTCTATCTTACTCATCGACATTTTGTATAATTCTGCTTGTTCATTGATGGTTGAAAAAGGATAACACCTATTATACAGTTCTTACAGCATGAAATGGGAAGATTGATTCTATGATCC</gDNA_template>
            <first_frame> R  R  L  I  T  H  A  N  A  K  S  K  S  E  K  F  P  P  P  H  Q  D  G  G  L  G  V  P  L  G  A  S  H  H  I  D  P  S  L  V  P  P  D  V  P  F  S  S  T  S  F  T  Y  S  K  E  P  V  Q  N  W  S  G  P  L  V  E  P  A  S  A  G  G  R  R  K  K  H  T  A  G  D  A  K  K  H  L  S  K  R  R  *  E  A  T  L  F  W  V  A  A  E  R  E  L  Q  M  S  V  S  M  A  Y  S  G  N  N  I  K  S  G  G  L  A  M  A  T  L  *  S  I  L  L  L  M  H  L  P  E  K  G  L  *  *  C  P  E  R  S  I  A  F  L  F  H  F  Q  I  *  K  G  P  S  G  F  *  L  L  N  L  L  W  W  R  E  A  P  Q  L  H  V  Y  *  Y  Y  Q  S  *  F  F  V  M  V  C  S  T  S  A  V  G  R  K  F  Y  I  Y  I  *  P  V  *  L  H  L  L  Y  L  T  H  R  H  F  V  *  F  C  L  F  I  D  G  *  K  R  I  T  P  I  I  Q  F  L  Q  H  E  M  G  R  L  I  L  *  S </first_frame>
            <second_frame>  V  A  *  S  L  T  Q  M  Q  R  A  R  V  R  S  F  P  H  H  T  R  T  E  D  L  A  F  P  W  V  L  H  I  T  L  I  R  P  L  S  L  R  M  C  H  S  V  R  P  H  S  H  I  Q  K  N  L  S  R  I  G  Q  A  L  *  *  S  L  L  Q  L  V  E  G  G  R  S  I  L  Q  A  M  P  K  S  I  C  Q  R  E  D  E  K  Q  P  C  F  G  *  Q  Q  S  E  S  F  R  *  V  F  L  W  P  I  L  E  I  T  L  K  V  G  G  W  P  W  Q  H  F  E  A  F  C  Y  *  C  I  F  Q  R  R  V  Y  S  N  A  Q  S  E  A  L  L  S  F  S  I  S  K  Y  R  R  V  L  L  V  F  D  F  S  I  C  C  G  G  V  K  L  P  S  Y  M  Y  I  S  T  T  R  V  N  S  L  *  W  Y  V  R  L  L  Q  L  V  E  N  F  T  S  I  F  D  R  C  N  C  I  S  S  I  L  L  I  D  I  L  Y  N  S  A  C  S  L  M  V  E  K  G  *  H  L  L  Y  S  S  Y  S  M  K  W  E  D  *  F  Y  D   </second_frame>
            <third_frame>   S  P  N  H  S  R  K  C  K  E  Q  E  *  E  V  S  P  T  T  P  G  R  R  T  W  R  S  L  G  C  F  T  S  H  *  S  V  P  C  P  S  G  C  A  I  Q  F  D  L  I  H  I  F  K  R  T  C  P  E  L  V  R  P  F  S  R  A  C  F  S  W  W  K  A  E  E  A  Y  C  R  R  C  Q  K  A  F  V  K  E  K  M  R  S  N  L  V  L  G  S  S  R  A  R  A  S  D  E  C  F  Y  G  L  F  W  K  *  H  *  K  W  G  A  G  H  G  N  T  L  K  H  F  V  I  N  A  S  S  R  E  G  F  I  V  M  P  R  A  K  H  C  F  P  F  P  F  P  N  I  E  G  S  F  W  F  L  T  S  Q  F  V  V  V  A  *  S  S  P  V  T  C  I  L  V  L  P  E  L  I  L  C  D  G  M  F  D  F  C  S  W  *  K  I  L  H  L  Y  L  T  G  V  I  A  S  P  L  S  Y  S  S  T  F  C  I  I  L  L  V  H  *  W  L  K  K  D  N  T  Y  Y  T  V  L  T  A  *  N  G  K  I  D  S  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53179" stop="52904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLITHANAKSKSEKFPPPHQDGGLGVPLGASHHIDPSLVPPDVPFSSTSFTYSKEPVQNWSGPLVEPASAGGRRKKHTAGDAKKHLSKRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53072" stop="52830"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVPCPSGCAIQFDLIHIFKRTCPELVRPFSRACFSWWKAEEAYCRRCQKAFVKEKMRSNLVLGSSRARASDECFYGLFWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="54265" PGL_stop="53752"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54265" e_stop="53752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54265" e_stop="53752" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54265" stop="53752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAGTGCAGCTTTAAAGTTAAGAGGAATGCCATCTGTGTTAGCAAACTAGAAGAGAGAATAGTGTTACTGATCCTAGTAATCTAAGTATGGAGGTCTTGTGCGCACTTTACTTTATCTGGCAACAATATGTCATTTGCAGTGTAGAAATATAAAGTCAGATATCCGTGTCTCGTGAAAAAGATATTTGTAGCATACAGGACTTGCTTGTCAACTTGTCAATGCTTTAGCTTTACATTGTTATTGTACCATGTTTGGATGCAATTGATCTTTTGGAAATCTTATTCTTCTCTCATTGGTTTTACAGTTTCAACAATGTAACTATAGAGGCCATTGATATTTGTAAATTCATTTTTTCCATTTCTAATTAGAAATAACAATATTAAATATTCACTTCTGGGTTCCATCTGATGCTTGTGAAATGGTGACAAGCTGTTCATTCCATCTCATCATGCAGGCTAAGAGCCGCTAATAAAGCTACAGGAGATGGTGCTAAGAGAGTACGCCATCGTGAA</gDNA_template>
            <first_frame> V  S  A  A  L  K  L  R  G  M  P  S  V  L  A  N  *  K  R  E  *  C  Y  *  S  *  *  S  K  Y  G  G  L  V  R  T  L  L  Y  L  A  T  I  C  H  L  Q  C  R  N  I  K  S  D  I  R  V  S  *  K  R  Y  L  *  H  T  G  L  A  C  Q  L  V  N  A  L  A  L  H  C  Y  C  T  M  F  G  C  N  *  S  F  G  N  L  I  L  L  S  L  V  L  Q  F  Q  Q  C  N  Y  R  G  H  *  Y  L  *  I  H  F  F  H  F  *  L  E  I  T  I  L  N  I  H  F  W  V  P  S  D  A  C  E  M  V  T  S  C  S  F  H  L  I  M  Q  A  K  S  R  *  *  S  Y  R  R  W  C  *  E  S  T  P  S  *  </first_frame>
            <second_frame>  *  V  Q  L  *  S  *  E  E  C  H  L  C  *  Q  T  R  R  E  N  S  V  T  D  P  S  N  L  S  M  E  V  L  C  A  L  Y  F  I  W  Q  Q  Y  V  I  C  S  V  E  I  *  S  Q  I  S  V  S  R  E  K  D  I  C  S  I  Q  D  L  L  V  N  L  S  M  L  *  L  Y  I  V  I  V  P  C  L  D  A  I  D  L  L  E  I  L  F  F  S  H  W  F  Y  S  F  N  N  V  T  I  E  A  I  D  I  C  K  F  I  F  S  I  S  N  *  K  *  Q  Y  *  I  F  T  S  G  F  H  L  M  L  V  K  W  *  Q  A  V  H  S  I  S  S  C  R  L  R  A  A  N  K  A  T  G  D  G  A  K  R  V  R  H  R  E </second_frame>
            <third_frame>   E  C  S  F  K  V  K  R  N  A  I  C  V  S  K  L  E  E  R  I  V  L  L  I  L  V  I  *  V  W  R  S  C  A  H  F  T  L  S  G  N  N  M  S  F  A  V  *  K  Y  K  V  R  Y  P  C  L  V  K  K  I  F  V  A  Y  R  T  C  L  S  T  C  Q  C  F  S  F  T  L  L  L  Y  H  V  W  M  Q  L  I  F  W  K  S  Y  S  S  L  I  G  F  T  V  S  T  M  *  L  *  R  P  L  I  F  V  N  S  F  F  P  F  L  I  R  N  N  N  I  K  Y  S  L  L  G  S  I  *  C  L  *  N  G  D  K  L  F  I  P  S  H  H  A  G  *  E  P  L  I  K  L  Q  E  M  V  L  R  E  Y  A  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0123A07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 80 chains have been computed
$ 
$ memory statistics:
$ 136872 bytes spliced alignments in total
$ 65 spliced alignments have been stored
$ 2105 bytes was the average size of a spliced alignment
$ 24432 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1527 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 91 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:33:35
-->
